AlfalfaGEDB | Msa0320860

M. sativa cultivar zhongmu-4 / Msa0320860

KEGG: -
GO: GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
PFAM: PF05558.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320860	XP_013463310.1	98.131	214	4	0	1	214	1	214	8.03e-137	392

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320860	sp\|Q96262\|PCAP1_ARATH	61.326	181	58	2	1	171	1	179	3.66e-54	176

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0320860	0.801236	9.902305e-49	-8.615850e-47
Msa0174260	Msa0320860	0.800823	1.202597e-48	-8.615850e-47
Msa0189030	Msa0320860	0.801297	9.624160e-49	-8.615850e-47
Msa0191890	Msa0320860	0.801114	1.048885e-48	-8.615850e-47
Msa0200650	Msa0320860	0.920263	1.597563e-87	-8.615850e-47
Msa0202930	Msa0320860	0.803182	3.938306e-49	-8.615850e-47
Msa0240270	Msa0320860	0.807092	5.983049e-50	-8.615850e-47
Msa0281740	Msa0320860	0.999350	4.801651e-305	-8.615850e-47
Msa0309270	Msa0320860	0.808074	3.702577e-50	-8.615850e-47
Msa0320860	Msa0341230	0.800846	1.189996e-48	-8.615850e-47
Msa0320860	Msa0422180	0.800767	1.235217e-48	-8.615850e-47
Msa0320860	Msa0566350	0.824199	9.187824e-54	-8.615850e-47
Msa0320860	Msa0566750	0.825457	4.639429e-54	-8.615850e-47
Msa0320860	Msa0616550	0.817641	2.967503e-52	-8.615850e-47
Msa0320860	Msa0654310	0.828942	6.791328e-55	-8.615850e-47
Msa0320860	Msa0658680	0.805993	1.020519e-49	-8.615850e-47
Msa0320860	Msa0673120	0.807273	5.478961e-50	-8.615850e-47
Msa0320860	Msa0698440	0.806602	7.597496e-50	-8.615850e-47
Msa0320860	Msa0732600	0.802792	4.741633e-49	-8.615850e-47
Msa0320860	Msa0805420	0.816743	4.724292e-52	-8.615850e-47
Msa0320860	Msa0842770	0.806573	7.705208e-50	-8.615850e-47
Msa0320860	Msa0981040	0.806577	7.687088e-50	-8.615850e-47
Msa0320860	Msa1039760	0.804607	1.992180e-49	-8.615850e-47
Msa0320860	Msa1143020	0.800551	1.366694e-48	-8.615850e-47
Msa0320860	Msa1349450	0.823738	1.178354e-53	-8.615850e-47
Msa0320860	Msa1401270	0.802508	5.425932e-49	-8.615850e-47
Msa0320860	Msa1442790	0.819148	1.352011e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320860	MtrunA17_Chr2g0296431	98.131	214	4	0	1	214	1	214	7.38e-141	392

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320860	AT4G20260.8	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.1	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.3	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.2	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.9	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.7	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.10	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0320860	AT4G20260.6	68.243	148	43	2	1	145	1	147	4.95e-54	171
Msa0320860	AT4G20260.5	67.857	140	45	0	1	140	1	140	1.39e-53	169
Msa0320860	AT4G20260.4	60.989	182	58	3	1	171	1	180	1.93e-53	171

Find 50 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATAGAAGAACTTGTTAAAAT+TGG	0.213794	2_4:-21722565	Msa0320860:intron
TGTGAAAATGTGAATGTTTA+TGG	0.239691	2_4:-21721968	Msa0320860:three_prime_UTR
AGTTGTTGAAGAAGAGAAAA+AGG	0.260064	2_4:-21722268	Msa0320860:CDS
TTTGGACCAGCCTTAGTTTC+AGG	0.262260	2_4:-21722417	Msa0320860:CDS
TATGTCTGTGGTGCTTATTT+TGG	0.313228	2_4:-21723402	Msa0320860:five_prime_UTR
TCCTCCTCCCGCGGAGAAAC+AGG	0.321981	2_4:-21722178	Msa0320860:CDS
AAAGGAAAATAAAGCAAAAC+AGG	0.336266	2_4:+21721817	None:intergenic
AAGCAAAACAGGGACATATA+TGG	0.360009	2_4:+21721828	None:intergenic
TCAACAAACTTTCAAGCCTT+TGG	0.364448	2_4:+21722111	None:intergenic
CTTTGACTCATCAAAGGTCT+TGG	0.366152	2_4:+21723201	None:intergenic
GGAAGCAAAAGATGGGTTAC+TGG	0.373360	2_4:-21723300	Msa0320860:exon
TCAACTGCAGCCGGCTCAAC+CGG	0.383238	2_4:+21722147	None:intergenic
TCCTGTTTCTCCGCGGGAGG+AGG	0.385073	2_4:+21722177	None:intergenic
ATATGAAACAACAAACATAA+AGG	0.405905	2_4:+21721865	None:intergenic
TCTGAAGCATCATCCAAGTT+TGG	0.412649	2_4:-21722435	Msa0320860:CDS
AAACATTTGGAAGCAAAAGA+TGG	0.424068	2_4:-21723308	Msa0320860:exon
AATTGAATCTTCTGCAGAAA+AGG	0.424490	2_4:-21722229	Msa0320860:CDS
TGCAGAAAAGGTTGAAGAAA+AGG	0.428765	2_4:-21722217	Msa0320860:CDS
GTTATAAGAACTCAAGGTTA+AGG	0.434726	2_4:-21723343	Msa0320860:five_prime_UTR
GAAAACTGGACCTGAAACTA+AGG	0.436909	2_4:+21722407	None:intergenic
GGGAATCAATAAAGAGTTTG+AGG	0.437077	2_4:-21723007	Msa0320860:CDS
AACTAAGGCTGGTCCAAACT+TGG	0.441827	2_4:+21722422	None:intergenic
TTCTCCGCGGGAGGAGGAGC+CGG	0.468573	2_4:+21722183	None:intergenic
TTGTCAAGGAATTGTGACTT+TGG	0.469481	2_4:-21721912	Msa0320860:three_prime_UTR
CAAGACCTTTGATGAGTCAA+AGG	0.477303	2_4:-21723200	Msa0320860:intron
GCATGGTGTGTGTGCTGGAA+TGG	0.482118	2_4:-21723466	Msa0320860:five_prime_UTR
AAGGAATTGTGACTTTGGAT+TGG	0.488861	2_4:-21721907	Msa0320860:three_prime_UTR
AGCATCTTCAACTGAAATCA+AGG	0.494963	2_4:-21722941	Msa0320860:intron
TCCTCCTGTTTCTCCGCGGG+AGG	0.496545	2_4:+21722174	None:intergenic
ATTATGCATGGTGTGTGTGC+TGG	0.506644	2_4:-21723471	Msa0320860:five_prime_UTR
AGAAAAGGATGCAGCTGAGC+CGG	0.507989	2_4:-21722202	Msa0320860:CDS
TCTACTTGTTCAACTGCAGC+CGG	0.508607	2_4:+21722138	None:intergenic
ACAAACTTTCAAGCCTTTGG+TGG	0.520637	2_4:+21722114	None:intergenic
TTGATAGTTATAAGAACTCA+AGG	0.524120	2_4:-21723349	Msa0320860:five_prime_UTR
GTCAAAGAACGTGATGTAGC+AGG	0.529799	2_4:-21722622	Msa0320860:CDS
GGTTCTTCCCAAGATCAAGA+AGG	0.544230	2_4:-21723269	Msa0320860:CDS
AACATTTGGAAGCAAAAGAT+GGG	0.550046	2_4:-21723307	Msa0320860:exon
AAACAAGTGGTGTTAAAGAG+AGG	0.557539	2_4:-21722296	Msa0320860:CDS
TAAGAAAACAGCTGCTGCTG+AGG	0.571062	2_4:-21723227	Msa0320860:CDS
AACAAGTGGTGTTAAAGAGA+GGG	0.574339	2_4:-21722295	Msa0320860:CDS
ACAAACCTTTGACTCATCAA+AGG	0.584760	2_4:+21723195	None:intergenic
TGTACATTTGGAATTATGCA+TGG	0.588466	2_4:-21723483	None:intergenic
TCCTCCCGCGGAGAAACAGG+AGG	0.602952	2_4:-21722175	Msa0320860:CDS
ACTGGACCTGAAACTAAGGC+TGG	0.610443	2_4:+21722411	None:intergenic
AAAACAGAAGATGAAACAAG+TGG	0.618986	2_4:-21722309	Msa0320860:CDS
TGAGCCGGCTCCTCCTCCCG+CGG	0.659003	2_4:-21722187	Msa0320860:CDS
TGAACAAGTAGAACCACCAA+AGG	0.665776	2_4:-21722127	Msa0320860:CDS
TATATGTATATGTATGTCTG+TGG	0.676872	2_4:-21723414	Msa0320860:five_prime_UTR
GATGGGTTACTGGACAACAA+AGG	0.677203	2_4:-21723290	Msa0320860:CDS
AAGGAAAATAAAGCAAAACA+GGG	0.712132	2_4:+21721818	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAGTTTTTATAACATTGT+AGG	+	chr2_4:21721863-21721882	None:intergenic	15.0%
!!!	TTTGCTTTTATATTTTGTTA+CGG	+	chr2_4:21722465-21722484	None:intergenic	15.0%
!!	AAGCAAAAAATATATGTATA+TGG	-	chr2_4:21722478-21722497	Msa0320860:intron	15.0%
!!	TCTTCAAAAATAAACAAATA+AGG	+	chr2_4:21722787-21722806	None:intergenic	15.0%
!!!	AAAAGTTTTTATAACATTGT+AGG	+	chr2_4:21721863-21721882	None:intergenic	15.0%
!!!	TTTGCTTTTATATTTTGTTA+CGG	+	chr2_4:21722465-21722484	None:intergenic	15.0%
!!	AAGCAAAAAATATATGTATA+TGG	-	chr2_4:21722478-21722497	Msa0320860:intron	15.0%
!!	TCTTCAAAAATAAACAAATA+AGG	+	chr2_4:21722787-21722806	None:intergenic	15.0%
!!	AATAGTTCATATATTTGATG+TGG	-	chr2_4:21722252-21722271	Msa0320860:CDS	20.0%
!!	AAGTAAAAATATCATGTATG+TGG	+	chr2_4:21722561-21722580	None:intergenic	20.0%
!!!	TGAAAATTTTCCATCAATAT+TGG	+	chr2_4:21722638-21722657	None:intergenic	20.0%
!!!	ATAGAAGAACTTGTTAAAAT+TGG	-	chr2_4:21722736-21722755	Msa0320860:intron	20.0%
!!!	GTAAAGTATTTATAGTTTTC+CGG	-	chr2_4:21722758-21722777	Msa0320860:intron	20.0%
!!!	ATATATATTTCAGATTTTCC+TGG	-	chr2_4:21722830-21722849	Msa0320860:intron	20.0%
!!!	CATTTTTCATTTTATTGTCA+AGG	-	chr2_4:21723375-21723394	Msa0320860:five_prime_UTR	20.0%
!!	ATATGAAACAACAAACATAA+AGG	+	chr2_4:21723439-21723458	None:intergenic	20.0%
!!	AATAGTTCATATATTTGATG+TGG	-	chr2_4:21722252-21722271	Msa0320860:CDS	20.0%
!!	AAGTAAAAATATCATGTATG+TGG	+	chr2_4:21722561-21722580	None:intergenic	20.0%
!!!	TGAAAATTTTCCATCAATAT+TGG	+	chr2_4:21722638-21722657	None:intergenic	20.0%
!!!	ATAGAAGAACTTGTTAAAAT+TGG	-	chr2_4:21722736-21722755	Msa0320860:intron	20.0%
!!!	GTAAAGTATTTATAGTTTTC+CGG	-	chr2_4:21722758-21722777	Msa0320860:intron	20.0%
!!!	ATATATATTTCAGATTTTCC+TGG	-	chr2_4:21722830-21722849	Msa0320860:intron	20.0%
!!!	CATTTTTCATTTTATTGTCA+AGG	-	chr2_4:21723375-21723394	Msa0320860:five_prime_UTR	20.0%
!!	ATATGAAACAACAAACATAA+AGG	+	chr2_4:21723439-21723458	None:intergenic	20.0%
!	TATATGTATATGTATGTCTG+TGG	-	chr2_4:21721887-21721906	Msa0320860:three_prime_UTR	25.0%
!!	TTGATAGTTATAAGAACTCA+AGG	-	chr2_4:21721952-21721971	Msa0320860:three_prime_UTR	25.0%
!	TTCATATATTTGATGTGGTT+CGG	-	chr2_4:21722257-21722276	Msa0320860:CDS	25.0%
!!	CTTTTATATTTTGTTACGGA+GGG	+	chr2_4:21722461-21722480	None:intergenic	25.0%
!	ACATGTATCTGGTTAAAATT+TGG	-	chr2_4:21722534-21722553	Msa0320860:intron	25.0%
!	CATGTATCTGGTTAAAATTT+GGG	-	chr2_4:21722535-21722554	Msa0320860:intron	25.0%
!	AAATAAACAAATAAGGTTGC+CGG	+	chr2_4:21722780-21722799	None:intergenic	25.0%
!	TTCTCAAAAACAAAGAAAAC+TGG	+	chr2_4:21722911-21722930	None:intergenic	25.0%
!!!	AGTTTTCTTTGTTTTTGAGA+AGG	-	chr2_4:21722910-21722929	Msa0320860:intron	25.0%
!	TGTGAAAATGTGAATGTTTA+TGG	-	chr2_4:21723333-21723352	Msa0320860:five_prime_UTR	25.0%
!	TATATGTATATGTATGTCTG+TGG	-	chr2_4:21721887-21721906	Msa0320860:three_prime_UTR	25.0%
!!	TTGATAGTTATAAGAACTCA+AGG	-	chr2_4:21721952-21721971	Msa0320860:three_prime_UTR	25.0%
!	TTCATATATTTGATGTGGTT+CGG	-	chr2_4:21722257-21722276	Msa0320860:CDS	25.0%
!!	CTTTTATATTTTGTTACGGA+GGG	+	chr2_4:21722461-21722480	None:intergenic	25.0%
!	ACATGTATCTGGTTAAAATT+TGG	-	chr2_4:21722534-21722553	Msa0320860:intron	25.0%
!	CATGTATCTGGTTAAAATTT+GGG	-	chr2_4:21722535-21722554	Msa0320860:intron	25.0%
!	AAATAAACAAATAAGGTTGC+CGG	+	chr2_4:21722780-21722799	None:intergenic	25.0%
!	TTCTCAAAAACAAAGAAAAC+TGG	+	chr2_4:21722911-21722930	None:intergenic	25.0%
!!!	AGTTTTCTTTGTTTTTGAGA+AGG	-	chr2_4:21722910-21722929	Msa0320860:intron	25.0%
!	TGTGAAAATGTGAATGTTTA+TGG	-	chr2_4:21723333-21723352	Msa0320860:five_prime_UTR	25.0%
	GTTATAAGAACTCAAGGTTA+AGG	-	chr2_4:21721958-21721977	Msa0320860:three_prime_UTR	30.0%
!!!	TTCCAAATGTTTTTTCTCTG+TGG	+	chr2_4:21721985-21722004	None:intergenic	30.0%
	AAACATTTGGAAGCAAAAGA+TGG	-	chr2_4:21721993-21722012	Msa0320860:three_prime_UTR	30.0%
	AACATTTGGAAGCAAAAGAT+GGG	-	chr2_4:21721994-21722013	Msa0320860:three_prime_UTR	30.0%
	TCAAAAACCTTCTTGATCTT+GGG	+	chr2_4:21722042-21722061	None:intergenic	30.0%
!	GCTTTTATATTTTGTTACGG+AGG	+	chr2_4:21722462-21722481	None:intergenic	30.0%
	TTAGACTAGATACATGTATC+TGG	-	chr2_4:21722523-21722542	Msa0320860:intron	30.0%
	GAAAAAGACACCAATATTGA+TGG	-	chr2_4:21722625-21722644	Msa0320860:CDS	30.0%
	AATATCACCTTTACAGAGTT+TGG	-	chr2_4:21722657-21722676	Msa0320860:intron	30.0%
	AAAACAGAAGATGAAACAAG+TGG	-	chr2_4:21722992-21723011	Msa0320860:CDS	30.0%
	AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_4:21723033-21723052	Msa0320860:intron	30.0%
	AATTGAATCTTCTGCAGAAA+AGG	-	chr2_4:21723072-21723091	Msa0320860:intron	30.0%
	GTTATAAGAACTCAAGGTTA+AGG	-	chr2_4:21721958-21721977	Msa0320860:three_prime_UTR	30.0%
!!!	TTCCAAATGTTTTTTCTCTG+TGG	+	chr2_4:21721985-21722004	None:intergenic	30.0%
	AAACATTTGGAAGCAAAAGA+TGG	-	chr2_4:21721993-21722012	Msa0320860:three_prime_UTR	30.0%
	AACATTTGGAAGCAAAAGAT+GGG	-	chr2_4:21721994-21722013	Msa0320860:three_prime_UTR	30.0%
	TCAAAAACCTTCTTGATCTT+GGG	+	chr2_4:21722042-21722061	None:intergenic	30.0%
!	GCTTTTATATTTTGTTACGG+AGG	+	chr2_4:21722462-21722481	None:intergenic	30.0%
	TTAGACTAGATACATGTATC+TGG	-	chr2_4:21722523-21722542	Msa0320860:intron	30.0%
	GAAAAAGACACCAATATTGA+TGG	-	chr2_4:21722625-21722644	Msa0320860:CDS	30.0%
	AATATCACCTTTACAGAGTT+TGG	-	chr2_4:21722657-21722676	Msa0320860:intron	30.0%
	AAAACAGAAGATGAAACAAG+TGG	-	chr2_4:21722992-21723011	Msa0320860:CDS	30.0%
	AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_4:21723033-21723052	Msa0320860:intron	30.0%
	AATTGAATCTTCTGCAGAAA+AGG	-	chr2_4:21723072-21723091	Msa0320860:intron	30.0%
!	TATGTCTGTGGTGCTTATTT+TGG	-	chr2_4:21721899-21721918	Msa0320860:three_prime_UTR	35.0%
	GACCACAGAGAAAAAACATT+TGG	-	chr2_4:21721980-21721999	Msa0320860:three_prime_UTR	35.0%
	CTCAAAAACCTTCTTGATCT+TGG	+	chr2_4:21722043-21722062	None:intergenic	35.0%
	ACAAACCTTTGACTCATCAA+AGG	+	chr2_4:21722109-21722128	None:intergenic	35.0%
!!!	TGTGGTTCGGTATTTTGTTT+AGG	-	chr2_4:21722270-21722289	Msa0320860:CDS	35.0%
!!	GTTCGGTATTTTGTTTAGGA+GGG	-	chr2_4:21722274-21722293	Msa0320860:CDS	35.0%
	GGGAATCAATAAAGAGTTTG+AGG	-	chr2_4:21722294-21722313	Msa0320860:CDS	35.0%
	AGCATCTTCAACTGAAATCA+AGG	-	chr2_4:21722360-21722379	Msa0320860:CDS	35.0%
	TCTTTGACCAAACTCTGTAA+AGG	+	chr2_4:21722667-21722686	None:intergenic	35.0%
!!!	GTTTTTGTTTCTGTAGTAGC+AGG	+	chr2_4:21722977-21722996	None:intergenic	35.0%
!	AAACAAGTGGTGTTAAAGAG+AGG	-	chr2_4:21723005-21723024	Msa0320860:CDS	35.0%
!	AACAAGTGGTGTTAAAGAGA+GGG	-	chr2_4:21723006-21723025	Msa0320860:CDS	35.0%
	TGCAGAAAAGGTTGAAGAAA+AGG	-	chr2_4:21723084-21723103	Msa0320860:intron	35.0%
	TCAACAAACTTTCAAGCCTT+TGG	+	chr2_4:21723193-21723212	None:intergenic	35.0%
	TTGTCAAGGAATTGTGACTT+TGG	-	chr2_4:21723389-21723408	Msa0320860:five_prime_UTR	35.0%
	AAGGAATTGTGACTTTGGAT+TGG	-	chr2_4:21723394-21723413	Msa0320860:five_prime_UTR	35.0%
	AAGCAAAACAGGGACATATA+TGG	+	chr2_4:21723476-21723495	None:intergenic	35.0%
!	TATGTCCCTGTTTTGCTTTA+TGG	-	chr2_4:21723478-21723497	Msa0320860:five_prime_UTR	35.0%
!	TATGTCTGTGGTGCTTATTT+TGG	-	chr2_4:21721899-21721918	Msa0320860:three_prime_UTR	35.0%
	GACCACAGAGAAAAAACATT+TGG	-	chr2_4:21721980-21721999	Msa0320860:three_prime_UTR	35.0%
	CTCAAAAACCTTCTTGATCT+TGG	+	chr2_4:21722043-21722062	None:intergenic	35.0%
	ACAAACCTTTGACTCATCAA+AGG	+	chr2_4:21722109-21722128	None:intergenic	35.0%
!!!	TGTGGTTCGGTATTTTGTTT+AGG	-	chr2_4:21722270-21722289	Msa0320860:CDS	35.0%
!!	GTTCGGTATTTTGTTTAGGA+GGG	-	chr2_4:21722274-21722293	Msa0320860:CDS	35.0%
	GGGAATCAATAAAGAGTTTG+AGG	-	chr2_4:21722294-21722313	Msa0320860:CDS	35.0%
	AGCATCTTCAACTGAAATCA+AGG	-	chr2_4:21722360-21722379	Msa0320860:CDS	35.0%
	TCTTTGACCAAACTCTGTAA+AGG	+	chr2_4:21722667-21722686	None:intergenic	35.0%
!!!	GTTTTTGTTTCTGTAGTAGC+AGG	+	chr2_4:21722977-21722996	None:intergenic	35.0%
!	AAACAAGTGGTGTTAAAGAG+AGG	-	chr2_4:21723005-21723024	Msa0320860:CDS	35.0%
!	AACAAGTGGTGTTAAAGAGA+GGG	-	chr2_4:21723006-21723025	Msa0320860:CDS	35.0%
	TGCAGAAAAGGTTGAAGAAA+AGG	-	chr2_4:21723084-21723103	Msa0320860:intron	35.0%
	TCAACAAACTTTCAAGCCTT+TGG	+	chr2_4:21723193-21723212	None:intergenic	35.0%
	TTGTCAAGGAATTGTGACTT+TGG	-	chr2_4:21723389-21723408	Msa0320860:five_prime_UTR	35.0%
	AAGGAATTGTGACTTTGGAT+TGG	-	chr2_4:21723394-21723413	Msa0320860:five_prime_UTR	35.0%
	AAGCAAAACAGGGACATATA+TGG	+	chr2_4:21723476-21723495	None:intergenic	35.0%
!!!	GCTTATTTTGGAGAGACAAG+TGG	-	chr2_4:21721911-21721930	Msa0320860:three_prime_UTR	40.0%
	CTTTGACTCATCAAAGGTCT+TGG	+	chr2_4:21722103-21722122	None:intergenic	40.0%
	CAAGACCTTTGATGAGTCAA+AGG	-	chr2_4:21722101-21722120	Msa0320860:three_prime_UTR	40.0%
!!	GGTTCGGTATTTTGTTTAGG+AGG	-	chr2_4:21722273-21722292	Msa0320860:CDS	40.0%
!!	TCAGATACTGCTTTTGATCC+AGG	+	chr2_4:21722851-21722870	None:intergenic	40.0%
!	TCTGAAGCATCATCCAAGTT+TGG	-	chr2_4:21722866-21722885	Msa0320860:intron	40.0%
	GAAAACTGGACCTGAAACTA+AGG	+	chr2_4:21722897-21722916	None:intergenic	40.0%
	TGAACAAGTAGAACCACCAA+AGG	-	chr2_4:21723174-21723193	Msa0320860:intron	40.0%
	ACAAACTTTCAAGCCTTTGG+TGG	+	chr2_4:21723190-21723209	None:intergenic	40.0%
!!!	GCTTATTTTGGAGAGACAAG+TGG	-	chr2_4:21721911-21721930	Msa0320860:three_prime_UTR	40.0%
	CTTTGACTCATCAAAGGTCT+TGG	+	chr2_4:21722103-21722122	None:intergenic	40.0%
	CAAGACCTTTGATGAGTCAA+AGG	-	chr2_4:21722101-21722120	Msa0320860:three_prime_UTR	40.0%
!!	GGTTCGGTATTTTGTTTAGG+AGG	-	chr2_4:21722273-21722292	Msa0320860:CDS	40.0%
!!	TCAGATACTGCTTTTGATCC+AGG	+	chr2_4:21722851-21722870	None:intergenic	40.0%
!	TCTGAAGCATCATCCAAGTT+TGG	-	chr2_4:21722866-21722885	Msa0320860:intron	40.0%
	GAAAACTGGACCTGAAACTA+AGG	+	chr2_4:21722897-21722916	None:intergenic	40.0%
	TGAACAAGTAGAACCACCAA+AGG	-	chr2_4:21723174-21723193	Msa0320860:intron	40.0%
	ACAAACTTTCAAGCCTTTGG+TGG	+	chr2_4:21723190-21723209	None:intergenic	40.0%
	ATTATGCATGGTGTGTGTGC+TGG	-	chr2_4:21721830-21721849	Msa0320860:three_prime_UTR	45.0%
!!	GGAAGCAAAAGATGGGTTAC+TGG	-	chr2_4:21722001-21722020	Msa0320860:three_prime_UTR	45.0%
!!	GATGGGTTACTGGACAACAA+AGG	-	chr2_4:21722011-21722030	Msa0320860:three_prime_UTR	45.0%
	GGTTCTTCCCAAGATCAAGA+AGG	-	chr2_4:21722032-21722051	Msa0320860:three_prime_UTR	45.0%
	TAAGAAAACAGCTGCTGCTG+AGG	-	chr2_4:21722074-21722093	Msa0320860:three_prime_UTR	45.0%
	GTCAAAGAACGTGATGTAGC+AGG	-	chr2_4:21722679-21722698	Msa0320860:intron	45.0%
!	AACTAAGGCTGGTCCAAACT+TGG	+	chr2_4:21722882-21722901	None:intergenic	45.0%
	TTTGGACCAGCCTTAGTTTC+AGG	-	chr2_4:21722884-21722903	Msa0320860:intron	45.0%
!!	TTTTTCCTCCTGTTTCTCCG+CGG	+	chr2_4:21723134-21723153	None:intergenic	45.0%
	GGAGAAACAGGAGGAAAAAC+CGG	-	chr2_4:21723135-21723154	Msa0320860:intron	45.0%
	TCTACTTGTTCAACTGCAGC+CGG	+	chr2_4:21723166-21723185	None:intergenic	45.0%
	ATTATGCATGGTGTGTGTGC+TGG	-	chr2_4:21721830-21721849	Msa0320860:three_prime_UTR	45.0%
!!	GGAAGCAAAAGATGGGTTAC+TGG	-	chr2_4:21722001-21722020	Msa0320860:three_prime_UTR	45.0%
!!	GATGGGTTACTGGACAACAA+AGG	-	chr2_4:21722011-21722030	Msa0320860:three_prime_UTR	45.0%
	GGTTCTTCCCAAGATCAAGA+AGG	-	chr2_4:21722032-21722051	Msa0320860:three_prime_UTR	45.0%
	TAAGAAAACAGCTGCTGCTG+AGG	-	chr2_4:21722074-21722093	Msa0320860:three_prime_UTR	45.0%
	GTCAAAGAACGTGATGTAGC+AGG	-	chr2_4:21722679-21722698	Msa0320860:intron	45.0%
!	AACTAAGGCTGGTCCAAACT+TGG	+	chr2_4:21722882-21722901	None:intergenic	45.0%
	TTTGGACCAGCCTTAGTTTC+AGG	-	chr2_4:21722884-21722903	Msa0320860:intron	45.0%
!!	TTTTTCCTCCTGTTTCTCCG+CGG	+	chr2_4:21723134-21723153	None:intergenic	45.0%
	GGAGAAACAGGAGGAAAAAC+CGG	-	chr2_4:21723135-21723154	Msa0320860:intron	45.0%
	TCTACTTGTTCAACTGCAGC+CGG	+	chr2_4:21723166-21723185	None:intergenic	45.0%
	ACTGGACCTGAAACTAAGGC+TGG	+	chr2_4:21722893-21722912	None:intergenic	50.0%
	AGAAAAGGATGCAGCTGAGC+CGG	-	chr2_4:21723099-21723118	Msa0320860:intron	50.0%
!!	TTTTCCTCCTGTTTCTCCGC+GGG	+	chr2_4:21723133-21723152	None:intergenic	50.0%
	ACTGGACCTGAAACTAAGGC+TGG	+	chr2_4:21722893-21722912	None:intergenic	50.0%
	AGAAAAGGATGCAGCTGAGC+CGG	-	chr2_4:21723099-21723118	Msa0320860:intron	50.0%
!!	TTTTCCTCCTGTTTCTCCGC+GGG	+	chr2_4:21723133-21723152	None:intergenic	50.0%
	GCATGGTGTGTGTGCTGGAA+TGG	-	chr2_4:21721835-21721854	Msa0320860:three_prime_UTR	55.0%
	GGAGGAAAAACCGGTTGAGC+CGG	-	chr2_4:21723144-21723163	Msa0320860:intron	55.0%
	GCATGGTGTGTGTGCTGGAA+TGG	-	chr2_4:21721835-21721854	Msa0320860:three_prime_UTR	55.0%
	GGAGGAAAAACCGGTTGAGC+CGG	-	chr2_4:21723144-21723163	Msa0320860:intron	55.0%
!	TCAACTGCAGCCGGCTCAAC+CGG	+	chr2_4:21723157-21723176	None:intergenic	60.0%
!	TCAACTGCAGCCGGCTCAAC+CGG	+	chr2_4:21723157-21723176	None:intergenic	60.0%
	TCCTCCTCCCGCGGAGAAAC+AGG	-	chr2_4:21723123-21723142	Msa0320860:intron	65.0%
!	TCCTGTTTCTCCGCGGGAGG+AGG	+	chr2_4:21723127-21723146	None:intergenic	65.0%
	TCCTCCCGCGGAGAAACAGG+AGG	-	chr2_4:21723126-21723145	Msa0320860:intron	65.0%
!	TCCTCCTGTTTCTCCGCGGG+AGG	+	chr2_4:21723130-21723149	None:intergenic	65.0%
	TCCTCCTCCCGCGGAGAAAC+AGG	-	chr2_4:21723123-21723142	Msa0320860:intron	65.0%
!	TCCTGTTTCTCCGCGGGAGG+AGG	+	chr2_4:21723127-21723146	None:intergenic	65.0%
	TCCTCCCGCGGAGAAACAGG+AGG	-	chr2_4:21723126-21723145	Msa0320860:intron	65.0%
!	TCCTCCTGTTTCTCCGCGGG+AGG	+	chr2_4:21723130-21723149	None:intergenic	65.0%
	TTCTCCGCGGGAGGAGGAGC+CGG	+	chr2_4:21723121-21723140	None:intergenic	70.0%
	TTCTCCGCGGGAGGAGGAGC+CGG	+	chr2_4:21723121-21723140	None:intergenic	70.0%
!	TGAGCCGGCTCCTCCTCCCG+CGG	-	chr2_4:21723114-21723133	Msa0320860:intron	75.0%
!	TGAGCCGGCTCCTCCTCCCG+CGG	-	chr2_4:21723114-21723133	Msa0320860:intron	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	21721826	21723497	21721826	ID=Msa0320860;Name=Msa0320860
chr2_4	mRNA	21721826	21723497	21721826	ID=Msa0320860-mRNA-1;Parent=Msa0320860;Name=Msa0320860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186\|1\|1\|1\|1\|1\|4\|296\|214
chr2_4	exon	21721826	21722480	21721826	ID=Msa0320860-mRNA-1:exon:7985;Parent=Msa0320860-mRNA-1
chr2_4	exon	21722566	21722650	21722566	ID=Msa0320860-mRNA-1:exon:7984;Parent=Msa0320860-mRNA-1
chr2_4	exon	21722942	21723031	21722942	ID=Msa0320860-mRNA-1:exon:7983;Parent=Msa0320860-mRNA-1
chr2_4	exon	21723201	21723497	21723201	ID=Msa0320860-mRNA-1:exon:7982;Parent=Msa0320860-mRNA-1
chr2_4	five_prime_UTR	21723312	21723497	21723312	ID=Msa0320860-mRNA-1:five_prime_utr;Parent=Msa0320860-mRNA-1
chr2_4	CDS	21723201	21723311	21723201	ID=Msa0320860-mRNA-1:cds;Parent=Msa0320860-mRNA-1
chr2_4	CDS	21722942	21723031	21722942	ID=Msa0320860-mRNA-1:cds;Parent=Msa0320860-mRNA-1
chr2_4	CDS	21722566	21722650	21722566	ID=Msa0320860-mRNA-1:cds;Parent=Msa0320860-mRNA-1
chr2_4	CDS	21722122	21722480	21722122	ID=Msa0320860-mRNA-1:cds;Parent=Msa0320860-mRNA-1
chr2_4	three_prime_UTR	21721826	21722121	21721826	ID=Msa0320860-mRNA-1:three_prime_utr;Parent=Msa0320860-mRNA-1

Gene Sequence

>Msa0320860

ATGGGTTACTGGACAACAAAGGTTCTTCCCAAGATCAAGAAGGTTTTTGAGAAGAATAGTACTAAGAAAACAGCTGCTGCTGAGGTTTCCAAGACCTTTGATGAGTCAAAGGAGGGAATCAATAAAGAGTTTGAGGAAAAGAAAACTGAACTTCAAACAAAAGTACTTGCTGTATATGAAGCATCTTCAACTGAAATCAAGAGTTTGGTCAAAGAACGTGATGTAGCAGGTCTAAAGAAGAACTCAACAGAAGCTCACAAATTCATAGAAGAACTTGTTAAAATTGATTTTCCTGGATCAAAAGCAGTATCTGAAGCATCATCCAAGTTTGGACCAGCCTTAGTTTCAGGTCCAGTTTTCTTTGTTTTTGAGAAGGTATCAACTTTCATAGTCACAGAAGAAAAAGTTGAAGAAGCACCTGCTACTACAGAAACAAAAACAGAAGATGAAACAAGTGGTGTTAAAGAGAGGGAAATAGTTGTTGAAGAAGAGAAAAAGGAAGAAACAAGTGAGAAAATTGAATCTTCTGCAGAAAAGGTTGAAGAAAAGGATGCAGCTGAGCCGGCTCCTCCTCCCGCGGAGAAACAGGAGGAAAAACCGGTTGAGCCGGCTGCAGTTGAACAAGTAGAACCACCAAAGGCTTGA

Protein sequence

>Msa0320860

MGYWTTKVLPKIKKVFEKNSTKKTAAAEVSKTFDESKEGINKEFEEKKTELQTKVLAVYEASSTEIKSLVKERDVAGLKKNSTEAHKFIEELVKIDFPGSKAVSEASSKFGPALVSGPVFFVFEKVSTFIVTEEKVEEAPATTETKTEDETSGVKEREIVVEEEKKEETSEKIESSAEKVEEKDAAEPAPPPAEKQEEKPVEPAAVEQVEPPKA*