Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326840 | XP_003595690.2 | 97.198 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326840 | sp|F4JF14|ENOL1_ARATH | 61.814 | 474 | 166 | 8 | 1 | 464 | 1 | 469 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0326840 | 0.800406 | 1.462799e-48 | -8.615850e-47 |
| Msa0053070 | Msa0326840 | 0.802195 | 6.293691e-49 | -8.615850e-47 |
| Msa0056180 | Msa0326840 | 0.800025 | 1.749065e-48 | -8.615850e-47 |
| Msa0081980 | Msa0326840 | 0.809707 | 1.656129e-50 | -8.615850e-47 |
| Msa0094780 | Msa0326840 | 0.803620 | 3.195837e-49 | -8.615850e-47 |
| Msa0159590 | Msa0326840 | 0.805940 | 1.047399e-49 | -8.615850e-47 |
| Msa0174290 | Msa0326840 | 0.801983 | 6.958250e-49 | -8.615850e-47 |
| Msa0200050 | Msa0326840 | 0.802892 | 4.520837e-49 | -8.615850e-47 |
| Msa0209980 | Msa0326840 | 0.816880 | 4.400893e-52 | -8.615850e-47 |
| Msa0225860 | Msa0326840 | 0.802745 | 4.848920e-49 | -8.615850e-47 |
| Msa0298470 | Msa0326840 | 0.830330 | 3.120605e-55 | -8.615850e-47 |
| Msa0321920 | Msa0326840 | 0.807945 | 3.944263e-50 | -8.615850e-47 |
| Msa0326840 | Msa0343010 | 0.800247 | 1.576568e-48 | -8.615850e-47 |
| Msa0326840 | Msa0367520 | 0.811021 | 8.620055e-51 | -8.615850e-47 |
| Msa0326840 | Msa0481890 | 0.832813 | 7.628504e-56 | -8.615850e-47 |
| Msa0326840 | Msa0567170 | 0.817307 | 3.528931e-52 | -8.615850e-47 |
| Msa0326840 | Msa0580370 | 0.800137 | 1.659271e-48 | -8.615850e-47 |
| Msa0326840 | Msa0590200 | 0.818173 | 2.250759e-52 | -8.615850e-47 |
| Msa0326840 | Msa0658640 | 0.823412 | 1.404291e-53 | -8.615850e-47 |
| Msa0326840 | Msa0703600 | 0.830636 | 2.626071e-55 | -8.615850e-47 |
| Msa0326840 | Msa0709200 | 0.833184 | 6.171477e-56 | -8.615850e-47 |
| Msa0326840 | Msa0709440 | 0.835232 | 1.891578e-56 | -8.615850e-47 |
| Msa0326840 | Msa0714790 | 0.808498 | 3.007159e-50 | -8.615850e-47 |
| Msa0326840 | Msa0735780 | 0.831535 | 1.579500e-55 | -8.615850e-47 |
| Msa0326840 | Msa0743440 | 0.821178 | 4.635370e-53 | -8.615850e-47 |
| Msa0326840 | Msa0745720 | 0.808129 | 3.603922e-50 | -8.615850e-47 |
| Msa0326840 | Msa0773630 | 0.826784 | 2.242684e-54 | -8.615850e-47 |
| Msa0326840 | Msa0777750 | 0.800473 | 1.417568e-48 | -8.615850e-47 |
| Msa0326840 | Msa0815920 | 0.802144 | 6.449536e-49 | -8.615850e-47 |
| Msa0326840 | Msa0824450 | 0.831042 | 2.088086e-55 | -8.615850e-47 |
| Msa0326840 | Msa0842070 | 0.819623 | 1.053597e-52 | -8.615850e-47 |
| Msa0326840 | Msa0867110 | 0.812434 | 4.248015e-51 | -8.615850e-47 |
| Msa0326840 | Msa0888790 | 0.812293 | 4.560692e-51 | -8.615850e-47 |
| Msa0326840 | Msa0915520 | 0.801948 | 7.076814e-49 | -8.615850e-47 |
| Msa0326840 | Msa0931590 | 0.807084 | 6.007092e-50 | -8.615850e-47 |
| Msa0326840 | Msa0966320 | 0.847477 | 1.128466e-59 | -8.615850e-47 |
| Msa0326840 | Msa0966480 | 0.825388 | 4.816514e-54 | -8.615850e-47 |
| Msa0326840 | Msa0997920 | 0.801078 | 1.066697e-48 | -8.615850e-47 |
| Msa0326840 | Msa1001740 | 0.800334 | 1.513351e-48 | -8.615850e-47 |
| Msa0326840 | Msa1037540 | 0.807839 | 4.155396e-50 | -8.615850e-47 |
| Msa0326840 | Msa1084530 | 0.830030 | 3.693634e-55 | -8.615850e-47 |
| Msa0326840 | Msa1094010 | 0.811060 | 8.455531e-51 | -8.615850e-47 |
| Msa0326840 | Msa1125820 | 0.831239 | 1.868500e-55 | -8.615850e-47 |
| Msa0326840 | Msa1125990 | 0.832456 | 9.354201e-56 | -8.615850e-47 |
| Msa0326840 | Msa1127470 | 0.807317 | 5.361876e-50 | -8.615850e-47 |
| Msa0326840 | Msa1132530 | 0.805003 | 1.646286e-49 | -8.615850e-47 |
| Msa0326840 | Msa1171290 | 0.827876 | 1.227856e-54 | -8.615850e-47 |
| Msa0326840 | Msa1192570 | 0.816212 | 6.212470e-52 | -8.615850e-47 |
| Msa0326840 | Msa1226520 | 0.825808 | 3.830611e-54 | -8.615850e-47 |
| Msa0326840 | Msa1301700 | 0.808362 | 3.215521e-50 | -8.615850e-47 |
| Msa0326840 | Msa1362130 | 0.805867 | 1.084994e-49 | -8.615850e-47 |
| Msa0326840 | Msa1381180 | 0.812187 | 4.808973e-51 | -8.615850e-47 |
| Msa0326840 | Msa1465360 | 0.805121 | 1.555276e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326840 | MtrunA17_Chr2g0307941 | 97.198 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 0.0 | 948 |
| Msa0326840 | MtrunA17_Chr4g0067151 | 26.316 | 228 | 146 | 4 | 51 | 266 | 16 | 233 | 2.55e-18 | 85.9 |
| Msa0326840 | MtrunA17_Chr4g0067151 | 23.849 | 239 | 171 | 5 | 61 | 295 | 77 | 308 | 8.38e-16 | 78.2 |
| Msa0326840 | MtrunA17_Chr1g0185501 | 25.000 | 220 | 156 | 2 | 48 | 266 | 13 | 224 | 3.67e-18 | 85.1 |
| Msa0326840 | MtrunA17_Chr5g0401671 | 22.848 | 302 | 167 | 6 | 52 | 296 | 289 | 581 | 1.48e-15 | 79.3 |
| Msa0326840 | MtrunA17_Chr5g0401671 | 26.500 | 200 | 129 | 3 | 34 | 223 | 401 | 592 | 4.72e-13 | 71.2 |
| Msa0326840 | MtrunA17_Chr5g0401671 | 22.745 | 255 | 165 | 7 | 57 | 291 | 242 | 484 | 2.22e-11 | 66.2 |
| Msa0326840 | MtrunA17_Chr4g0053651 | 22.896 | 297 | 163 | 7 | 57 | 296 | 277 | 564 | 1.86e-14 | 75.9 |
| Msa0326840 | MtrunA17_Chr4g0053651 | 27.326 | 172 | 108 | 2 | 61 | 223 | 412 | 575 | 2.80e-12 | 68.9 |
| Msa0326840 | MtrunA17_Chr1g0200901 | 24.910 | 277 | 198 | 5 | 12 | 287 | 74 | 341 | 3.85e-14 | 73.9 |
| Msa0326840 | MtrunA17_Chr7g0246741 | 27.948 | 229 | 137 | 7 | 60 | 267 | 409 | 630 | 5.60e-14 | 74.7 |
| Msa0326840 | MtrunA17_Chr5g0405851 | 25.893 | 224 | 143 | 5 | 65 | 273 | 157 | 372 | 1.38e-13 | 72.8 |
| Msa0326840 | MtrunA17_Chr6g0448921 | 26.794 | 209 | 144 | 3 | 61 | 268 | 15 | 215 | 3.15e-13 | 72.0 |
| Msa0326840 | MtrunA17_Chr5g0401661 | 20.968 | 248 | 178 | 4 | 58 | 296 | 433 | 671 | 4.85e-13 | 71.2 |
| Msa0326840 | MtrunA17_Chr5g0401661 | 26.000 | 200 | 130 | 3 | 34 | 223 | 491 | 682 | 7.87e-13 | 70.9 |
| Msa0326840 | MtrunA17_Chr2g0281451 | 26.778 | 239 | 154 | 6 | 68 | 294 | 12 | 241 | 2.80e-12 | 69.3 |
| Msa0326840 | MtrunA17_Chr4g0070791 | 24.074 | 270 | 189 | 7 | 61 | 316 | 13 | 280 | 9.30e-12 | 66.2 |
| Msa0326840 | MtrunA17_Chr3g0093681 | 27.014 | 211 | 142 | 5 | 65 | 273 | 275 | 475 | 2.96e-11 | 65.5 |
| Msa0326840 | MtrunA17_Chr2g0295791 | 25.954 | 131 | 97 | 0 | 56 | 186 | 164 | 294 | 3.00e-11 | 65.5 |
| Msa0326840 | MtrunA17_Chr1g0172501 | 27.014 | 211 | 142 | 5 | 65 | 273 | 275 | 475 | 3.50e-11 | 65.5 |
| Msa0326840 | MtrunA17_Chr8g0392701 | 26.549 | 226 | 152 | 5 | 58 | 279 | 59 | 274 | 4.33e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326840 | AT3G42660.1 | 61.814 | 474 | 166 | 8 | 1 | 464 | 1 | 469 | 0.0 | 570 |
| Msa0326840 | AT5G67320.1 | 23.677 | 359 | 189 | 10 | 6 | 296 | 258 | 599 | 9.42e-19 | 89.7 |
| Msa0326840 | AT5G67320.1 | 27.119 | 177 | 112 | 2 | 56 | 223 | 442 | 610 | 5.26e-12 | 68.6 |
| Msa0326840 | AT4G02730.1 | 26.217 | 267 | 174 | 8 | 12 | 268 | 79 | 332 | 3.52e-17 | 82.8 |
| Msa0326840 | AT1G71840.1 | 23.846 | 260 | 188 | 3 | 61 | 316 | 112 | 365 | 1.49e-15 | 79.0 |
| Msa0326840 | AT2G41500.1 | 26.908 | 249 | 161 | 9 | 22 | 265 | 261 | 493 | 5.05e-15 | 77.8 |
| Msa0326840 | AT2G41500.1 | 25.701 | 214 | 141 | 5 | 65 | 273 | 258 | 458 | 9.08e-14 | 73.9 |
| Msa0326840 | AT2G41500.2 | 26.908 | 249 | 161 | 9 | 22 | 265 | 261 | 493 | 5.05e-15 | 77.8 |
| Msa0326840 | AT2G41500.2 | 25.701 | 214 | 141 | 5 | 65 | 273 | 258 | 458 | 9.08e-14 | 73.9 |
| Msa0326840 | AT3G18130.1 | 28.139 | 231 | 150 | 6 | 54 | 279 | 55 | 274 | 1.28e-14 | 75.1 |
| Msa0326840 | AT1G48630.1 | 27.706 | 231 | 151 | 6 | 54 | 279 | 55 | 274 | 1.88e-14 | 74.7 |
| Msa0326840 | AT3G49660.1 | 22.261 | 283 | 203 | 6 | 33 | 306 | 38 | 312 | 3.09e-14 | 73.9 |
| Msa0326840 | AT5G23430.1 | 27.119 | 236 | 162 | 4 | 61 | 294 | 15 | 242 | 5.51e-14 | 75.1 |
| Msa0326840 | AT5G08390.1 | 26.695 | 236 | 163 | 4 | 61 | 294 | 15 | 242 | 5.86e-14 | 75.1 |
| Msa0326840 | AT5G23430.3 | 27.119 | 236 | 162 | 4 | 61 | 294 | 15 | 242 | 5.90e-14 | 74.7 |
| Msa0326840 | AT5G23430.2 | 27.119 | 236 | 162 | 4 | 61 | 294 | 15 | 242 | 5.90e-14 | 74.7 |
| Msa0326840 | AT1G18080.1 | 28.571 | 231 | 150 | 6 | 54 | 279 | 55 | 275 | 6.16e-14 | 73.2 |
| Msa0326840 | AT1G11160.4 | 26.877 | 253 | 174 | 5 | 61 | 310 | 14 | 258 | 7.08e-14 | 74.7 |
| Msa0326840 | AT1G11160.1 | 26.877 | 253 | 174 | 5 | 61 | 310 | 14 | 258 | 7.39e-14 | 74.7 |
| Msa0326840 | AT1G11160.2 | 26.877 | 253 | 174 | 5 | 61 | 310 | 14 | 258 | 7.79e-14 | 74.7 |
| Msa0326840 | AT1G11160.3 | 28.230 | 209 | 140 | 4 | 104 | 310 | 16 | 216 | 1.81e-12 | 70.5 |
| Msa0326840 | AT5G25150.2 | 26.222 | 225 | 151 | 5 | 106 | 329 | 420 | 630 | 4.34e-12 | 68.9 |
| Msa0326840 | AT5G25150.1 | 26.222 | 225 | 151 | 5 | 106 | 329 | 420 | 630 | 4.76e-12 | 68.6 |
| Msa0326840 | AT1G61210.3 | 26.291 | 213 | 135 | 4 | 68 | 268 | 12 | 214 | 7.05e-12 | 68.6 |
| Msa0326840 | AT1G61210.1 | 26.291 | 213 | 135 | 4 | 68 | 268 | 12 | 214 | 1.08e-11 | 67.8 |
| Msa0326840 | AT1G61210.2 | 26.291 | 213 | 135 | 4 | 68 | 268 | 12 | 214 | 1.11e-11 | 67.8 |
| Msa0326840 | AT4G29830.1 | 26.190 | 252 | 152 | 9 | 61 | 291 | 59 | 297 | 2.83e-11 | 65.1 |
| Msa0326840 | AT4G29830.1 | 26.540 | 211 | 141 | 5 | 61 | 259 | 13 | 221 | 7.77e-11 | 63.5 |
| Msa0326840 | AT5G13480.2 | 24.199 | 281 | 200 | 6 | 18 | 295 | 134 | 404 | 2.99e-11 | 66.2 |
| Msa0326840 | AT1G15440.2 | 23.902 | 205 | 147 | 4 | 107 | 309 | 352 | 549 | 3.21e-11 | 66.2 |
| Msa0326840 | AT1G15440.2 | 24.809 | 262 | 158 | 8 | 32 | 267 | 362 | 610 | 5.23e-11 | 65.5 |
| Msa0326840 | AT5G13480.4 | 24.199 | 281 | 200 | 6 | 18 | 295 | 111 | 381 | 3.55e-11 | 65.9 |
| Msa0326840 | AT5G13480.3 | 24.199 | 281 | 200 | 6 | 18 | 295 | 111 | 381 | 3.57e-11 | 65.9 |
| Msa0326840 | AT5G13480.1 | 24.199 | 281 | 200 | 6 | 18 | 295 | 123 | 393 | 3.72e-11 | 65.9 |
| Msa0326840 | AT1G15440.1 | 23.902 | 205 | 147 | 4 | 107 | 309 | 392 | 589 | 4.10e-11 | 65.9 |
| Msa0326840 | AT1G15440.1 | 24.809 | 262 | 158 | 8 | 32 | 267 | 402 | 650 | 6.18e-11 | 65.5 |
Find 140 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCCTTTCTTGTTAA+AGG | 0.102940 | 2_4:-37763213 | None:intergenic |
| TGACGAGATGCTCGGCTTTC+TGG | 0.117554 | 2_4:-37761724 | None:intergenic |
| TTCCTTTAGCGAGGAAAATT+TGG | 0.191208 | 2_4:+37763991 | Msa0326840:CDS |
| AATTCCACTTGTCTTGCTTC+TGG | 0.223494 | 2_4:+37761860 | Msa0326840:CDS |
| GAAGCAAGACAAGTGGAATT+AGG | 0.236177 | 2_4:-37761857 | None:intergenic |
| TTATGGGAAAGTACGGTATA+TGG | 0.279052 | 2_4:+37763777 | Msa0326840:CDS |
| CTCCGGTGCAGCCTGGAAAA+AGG | 0.283793 | 2_4:+37764179 | Msa0326840:CDS |
| AGGGAGGCCCACACCCAAAA+AGG | 0.303132 | 2_4:+37761668 | Msa0326840:CDS |
| CTTGGCTGTTATTGATGTTA+TGG | 0.312926 | 2_4:+37763760 | Msa0326840:CDS |
| GAGAAGTTGTTCACTCTTAG+AGG | 0.323210 | 2_4:+37763563 | Msa0326840:CDS |
| GATGCTAAGTATTCACCATT+AGG | 0.324517 | 2_4:-37763347 | None:intergenic |
| CTTCCTTCTGCTCGCTCCTA+TGG | 0.328122 | 2_4:+37761699 | Msa0326840:CDS |
| TGGATAAGCAGATTCTGATA+TGG | 0.342133 | 2_4:+37763654 | Msa0326840:CDS |
| TAACCATGAATGTTCTTTGC+TGG | 0.344332 | 2_4:+37763468 | Msa0326840:CDS |
| GATGAGGATGGAGAAGAATA+TGG | 0.350077 | 2_4:+37764013 | Msa0326840:CDS |
| GTTAAACTCTACAAATTTCC+AGG | 0.358029 | 2_4:+37761899 | Msa0326840:CDS |
| TTCTTGTGAGACTCAACCTT+TGG | 0.379372 | 2_4:-37764049 | None:intergenic |
| AAGCAAGACAAGTGGAATTA+GGG | 0.380027 | 2_4:-37761856 | None:intergenic |
| GGTTTAGCTTTCGACCCTAA+TGG | 0.381841 | 2_4:+37763332 | Msa0326840:CDS |
| TGCTGGGCAAGAACGGTAAT+GGG | 0.381945 | 2_4:+37763849 | Msa0326840:CDS |
| TGGAAATTTGTAGAGTTTAA+CGG | 0.383702 | 2_4:-37761897 | None:intergenic |
| CAACTGGAACTGTTATCATC+TGG | 0.397618 | 2_4:+37763378 | Msa0326840:CDS |
| TGGTGAATACTTAGCATCTC+TGG | 0.401903 | 2_4:+37763352 | Msa0326840:CDS |
| GAAGAGGACAATAGTGTTAG+TGG | 0.403080 | 2_4:+37763893 | Msa0326840:CDS |
| ATGATGTCGTGATGTATGAT+AGG | 0.404756 | 2_4:+37763531 | Msa0326840:CDS |
| TTGGCTGTTATTGATGTTAT+GGG | 0.405913 | 2_4:+37763761 | Msa0326840:CDS |
| ATGCTGGGCAAGAACGGTAA+TGG | 0.413782 | 2_4:+37763848 | Msa0326840:CDS |
| TCCTTTCTTGTTAAAGGCTA+AGG | 0.414137 | 2_4:-37763207 | None:intergenic |
| TGTCAGGAGCTATGCCCTTA+AGG | 0.415559 | 2_4:-37763430 | None:intergenic |
| AAGCTCATAAACACAGTTGA+TGG | 0.420082 | 2_4:+37763266 | Msa0326840:CDS |
| CGGTGGTGACGGAGAATCTT+GGG | 0.420399 | 2_4:-37761806 | None:intergenic |
| GTACATGGCTACCTCTGGTT+TGG | 0.421088 | 2_4:+37763634 | Msa0326840:CDS |
| GGTGAGACCTTAGCCATTCC+CGG | 0.422275 | 2_4:+37763500 | Msa0326840:CDS |
| CCGTGACGGTGTTACTGCTT+TGG | 0.422664 | 2_4:+37761826 | Msa0326840:CDS |
| TCCTTAGCCTTTAACAAGAA+AGG | 0.431176 | 2_4:+37763206 | Msa0326840:CDS |
| GGATAAGCAGATTCTGATAT+GGG | 0.435550 | 2_4:+37763655 | Msa0326840:CDS |
| ATGCAGGAGGCATTTCAATC+AGG | 0.439351 | 2_4:+37764151 | Msa0326840:CDS |
| TTCTTATGCTATAATATGCT+TGG | 0.446573 | 2_4:+37764205 | Msa0326840:CDS |
| ATGGCTAAGGTCTCACCATC+AGG | 0.447712 | 2_4:-37763494 | None:intergenic |
| GGAAGAAAAGGGTAAGGGTA+AGG | 0.451900 | 2_4:-37761581 | None:intergenic |
| TGAAATGAGAATGGAAGAAA+AGG | 0.451981 | 2_4:-37761593 | None:intergenic |
| GCATGGCATGGAAGCCAATC+GGG | 0.457931 | 2_4:+37763732 | Msa0326840:CDS |
| AACCGAGGATATACCTATGC+TGG | 0.460848 | 2_4:+37763832 | Msa0326840:CDS |
| TTAGCATCTCTGGATTCAAC+TGG | 0.461432 | 2_4:+37763362 | Msa0326840:CDS |
| ACGGTGGTGACGGAGAATCT+TGG | 0.464340 | 2_4:-37761807 | None:intergenic |
| GTTTAGTGTGTTGAGTGAAA+TGG | 0.466310 | 2_4:-37761558 | None:intergenic |
| ATGCTAAGTATTCACCATTA+GGG | 0.467256 | 2_4:-37763346 | None:intergenic |
| TTTGTTTGATGAGGAGGAAG+AGG | 0.476168 | 2_4:+37763877 | Msa0326840:CDS |
| ACTCCAGCAAAGAACATTCA+TGG | 0.476172 | 2_4:-37763471 | None:intergenic |
| TTCCTTCTGCTCGCTCCTAT+GGG | 0.478583 | 2_4:+37761700 | Msa0326840:CDS |
| GGTAGCCATGTACTTTCCAT+TGG | 0.481463 | 2_4:-37763624 | None:intergenic |
| AAAAGATCTAACCCAGTGTC+AGG | 0.492289 | 2_4:-37763446 | None:intergenic |
| ATCATCTGGGAACTCCACTC+AGG | 0.492318 | 2_4:+37763392 | Msa0326840:CDS |
| ATTGATGTTATGGGAAAGTA+CGG | 0.494652 | 2_4:+37763770 | Msa0326840:CDS |
| TGCATGGCATGGAAGCCAAT+CGG | 0.495392 | 2_4:+37763731 | Msa0326840:CDS |
| AGGTTGAGTCTCACAAGAAA+AGG | 0.495792 | 2_4:+37764053 | Msa0326840:CDS |
| AGTGGGAGCTTGAGTGATCT+AGG | 0.499180 | 2_4:+37763911 | Msa0326840:CDS |
| TTTCAATCCGGGAATGGCTA+AGG | 0.501980 | 2_4:-37763507 | None:intergenic |
| GGATACATCGGAAGAGGAAG+CGG | 0.502583 | 2_4:-37761747 | None:intergenic |
| GAGCGGAAGGAGGAAGAAGA+GGG | 0.507076 | 2_4:-37761784 | None:intergenic |
| GGATCAACTCCGGTGCAGCC+TGG | 0.508588 | 2_4:+37764172 | Msa0326840:CDS |
| GTTCTTTGCTGGAGTCCTGA+TGG | 0.510656 | 2_4:+37763479 | Msa0326840:CDS |
| GTCCCATAGGAGCGAGCAGA+AGG | 0.512084 | 2_4:-37761702 | None:intergenic |
| GAGAATGGAAGAAAAGGGTA+AGG | 0.513181 | 2_4:-37761587 | None:intergenic |
| GGAAAGTACATGGCTACCTC+TGG | 0.516488 | 2_4:+37763629 | Msa0326840:CDS |
| ATGGGATGTTGATAAGAAGC+AGG | 0.517698 | 2_4:+37763673 | Msa0326840:CDS |
| TATGGGAAAGTACGGTATAT+GGG | 0.518069 | 2_4:+37763778 | Msa0326840:CDS |
| AACTGGAACTGTTATCATCT+GGG | 0.518249 | 2_4:+37763379 | Msa0326840:CDS |
| CTATGCCCTTAAGGTTGTGA+AGG | 0.518660 | 2_4:-37763421 | None:intergenic |
| CATTAATCGGACCTTCATGA+TGG | 0.521281 | 2_4:-37761639 | None:intergenic |
| GTAGCCATGTACTTTCCATT+GGG | 0.521987 | 2_4:-37763623 | None:intergenic |
| TAGCGAGGAAAATTTGGATG+AGG | 0.523007 | 2_4:+37763997 | Msa0326840:CDS |
| ATCTATGAAGTCTCCAACCG+AGG | 0.527863 | 2_4:+37763817 | Msa0326840:CDS |
| GGAGCGGAAGGAGGAAGAAG+AGG | 0.534321 | 2_4:-37761785 | None:intergenic |
| GTTGGAGACTTCATAGATGA+AGG | 0.534620 | 2_4:-37763812 | None:intergenic |
| TGGTTGTGGTGAAATGAGAA+TGG | 0.536455 | 2_4:-37761602 | None:intergenic |
| CGGAGAATCTTGGGAGCGGA+AGG | 0.536997 | 2_4:-37761797 | None:intergenic |
| GGAAGCATGTTAGCAGCTGC+AGG | 0.541179 | 2_4:+37763227 | Msa0326840:CDS |
| AGCATAGGTATATCCTCGGT+TGG | 0.541520 | 2_4:-37763830 | None:intergenic |
| GAAGAAAAGGGTAAGGGTAA+GGG | 0.543593 | 2_4:-37761580 | None:intergenic |
| AGTTTGAGCCACCAACTAGC+AGG | 0.544933 | 2_4:+37763951 | Msa0326840:CDS |
| GAAGCCAATCGGGAATGCCT+TGG | 0.546613 | 2_4:+37763742 | Msa0326840:CDS |
| AAGGGCATAGCTCCTGACAC+TGG | 0.547665 | 2_4:+37763434 | Msa0326840:CDS |
| AGTCTCACAAGAAAAGGAAC+CGG | 0.550686 | 2_4:+37764059 | Msa0326840:CDS |
| ATACCTATGCTGGGCAAGAA+CGG | 0.553331 | 2_4:+37763842 | Msa0326840:CDS |
| AAATTGGATAATGGCAGTGT+GGG | 0.553910 | 2_4:+37764094 | Msa0326840:CDS |
| CCCTTTGAGAACCCTCGCAA+TGG | 0.555042 | 2_4:-37763291 | None:intergenic |
| ACAGCCAAGGCATTCCCGAT+TGG | 0.555211 | 2_4:-37763746 | None:intergenic |
| TGGAATTGATCTGTTTCCAA+AGG | 0.555631 | 2_4:+37764033 | Msa0326840:CDS |
| GCTCGGCTTTCTGGTCCCAT+AGG | 0.555984 | 2_4:-37761715 | None:intergenic |
| AAAGAGTGTGTTGCATGGCA+TGG | 0.557928 | 2_4:+37763720 | Msa0326840:CDS |
| TTAAAGGCTAAGGAACGTAT+CGG | 0.559188 | 2_4:-37763197 | None:intergenic |
| GAAATGAGAATGGAAGAAAA+GGG | 0.560478 | 2_4:-37761592 | None:intergenic |
| TAACACCGTCACGGTGGTGA+CGG | 0.561568 | 2_4:-37761817 | None:intergenic |
| CCATTGCGAGGGTTCTCAAA+GGG | 0.562457 | 2_4:+37763291 | Msa0326840:CDS |
| AGGTCCGATTAATGAAAATG+AGG | 0.564038 | 2_4:+37761648 | Msa0326840:CDS |
| GGGCACAGAGGACCTGTCAC+TGG | 0.566024 | 2_4:+37763311 | Msa0326840:CDS |
| TCCATTGCGAGGGTTCTCAA+AGG | 0.566889 | 2_4:+37763290 | Msa0326840:CDS |
| TCGAAAGCTAAACCAGTGAC+AGG | 0.568694 | 2_4:-37763323 | None:intergenic |
| GAGGAAAATTTGGATGAGGA+TGG | 0.570323 | 2_4:+37764001 | Msa0326840:CDS |
| CGATGGATACTCTCATATTG+AGG | 0.571779 | 2_4:+37764249 | Msa0326840:CDS |
| ACCGAGGATATACCTATGCT+GGG | 0.578472 | 2_4:+37763833 | Msa0326840:CDS |
| CAGTTGATGGCTCCATTGCG+AGG | 0.579193 | 2_4:+37763279 | Msa0326840:CDS |
| CGAGACGGATACATCGGAAG+AGG | 0.580447 | 2_4:-37761753 | None:intergenic |
| GCCCAGCATAGGTATATCCT+CGG | 0.582504 | 2_4:-37763834 | None:intergenic |
| AAGAGGACAATAGTGTTAGT+GGG | 0.587443 | 2_4:+37763894 | Msa0326840:CDS |
| GTCACCCAATGGAAAGTACA+TGG | 0.592946 | 2_4:+37763619 | Msa0326840:CDS |
| AAAATTGGATAATGGCAGTG+TGG | 0.593309 | 2_4:+37764093 | Msa0326840:CDS |
| GGAGCGAGCAGAAGGAAGCA+CGG | 0.593667 | 2_4:-37761694 | None:intergenic |
| AGTTGATGGCTCCATTGCGA+GGG | 0.593855 | 2_4:+37763280 | Msa0326840:CDS |
| AGAATCTTGGGAGCGGAAGG+AGG | 0.597907 | 2_4:-37761794 | None:intergenic |
| GGTCCGATTAATGAAAATGA+GGG | 0.598484 | 2_4:+37761649 | Msa0326840:CDS |
| GCGCAAACATTCCTTTAGCG+AGG | 0.600036 | 2_4:+37763982 | Msa0326840:CDS |
| AGGGCATAGCTCCTGACACT+GGG | 0.608009 | 2_4:+37763435 | Msa0326840:CDS |
| CAATTTCAAAACCATCATGA+AGG | 0.610512 | 2_4:+37761628 | Msa0326840:exon |
| GTGACGGAGAATCTTGGGAG+CGG | 0.612948 | 2_4:-37761801 | None:intergenic |
| TTACCGTTCTTGCCCAGCAT+AGG | 0.613307 | 2_4:-37763845 | None:intergenic |
| AGCAGCTGCAGGTGACGATG+AGG | 0.615532 | 2_4:+37763238 | Msa0326840:CDS |
| AGATCCAGAAGCAAGACAAG+TGG | 0.620556 | 2_4:-37761864 | None:intergenic |
| TCATCTGGGAACTCCACTCA+GGG | 0.626506 | 2_4:+37763393 | Msa0326840:CDS |
| CATAACATCAATAACAGCCA+AGG | 0.626933 | 2_4:-37763759 | None:intergenic |
| GGAAGCGGTGACGAGATGCT+CGG | 0.629625 | 2_4:-37761732 | None:intergenic |
| GATCTAGGTGAAAATAGTAA+CGG | 0.634490 | 2_4:+37763926 | Msa0326840:CDS |
| GCAGCTGCAGGTGACGATGA+GGG | 0.635620 | 2_4:+37763239 | Msa0326840:CDS |
| AAGAGGGTTATGAATCGAGA+CGG | 0.637900 | 2_4:-37761768 | None:intergenic |
| ATGAATCGAGACGGATACAT+CGG | 0.643428 | 2_4:-37761759 | None:intergenic |
| AGAATGGAAGAAAAGGGTAA+GGG | 0.646156 | 2_4:-37761586 | None:intergenic |
| CGATGAAAGAGTGTGTTGCA+TGG | 0.658186 | 2_4:+37763715 | Msa0326840:CDS |
| ATTTCAATCAGGATCAACTC+CGG | 0.662334 | 2_4:+37764162 | Msa0326840:CDS |
| ATTCTCCGTCACCACCGTGA+CGG | 0.666683 | 2_4:+37761812 | Msa0326840:CDS |
| TGATGTCGTGATGTATGATA+GGG | 0.673222 | 2_4:+37763532 | Msa0326840:CDS |
| GTATCCATCGTGATCGACAG+TGG | 0.676967 | 2_4:-37764236 | None:intergenic |
| CCGATTAATGAAAATGAGGG+AGG | 0.678975 | 2_4:+37761652 | Msa0326840:CDS |
| CCAAAGCAGTAACACCGTCA+CGG | 0.679399 | 2_4:-37761826 | None:intergenic |
| AATCTGCTTATCCAAACCAG+AGG | 0.701531 | 2_4:-37763645 | None:intergenic |
| TGTGGGATTTAGAAGCACAA+TGG | 0.706689 | 2_4:+37764111 | Msa0326840:CDS |
| ATAACCACTGTCGATCACGA+TGG | 0.726404 | 2_4:+37764232 | Msa0326840:CDS |
| AGGGTTCTCAAAGGGCACAG+AGG | 0.741058 | 2_4:+37763299 | Msa0326840:CDS |
| AGTTCGAGACAAATATCACG+AGG | 0.763362 | 2_4:+37763165 | Msa0326840:CDS |
| AAGCAGTAACACCGTCACGG+TGG | 0.770997 | 2_4:-37761823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAATTTTAAATAAAATTG+GGG | + | chr2_4:37761966-37761985 | Msa0326840:intron | 10.0% |
| !!! | ATTTTTAATCATTGTTATTA+AGG | + | chr2_4:37762001-37762020 | Msa0326840:intron | 10.0% |
| !!! | GATTTTTTGTTTTGATTTTT+AGG | + | chr2_4:37761934-37761953 | Msa0326840:intron | 15.0% |
| !! | AAATATCTATGTGATTTAAT+TGG | + | chr2_4:37762873-37762892 | Msa0326840:intron | 15.0% |
| !! | TGATTTCTAATTCTTTACAT+TGG | + | chr2_4:37762099-37762118 | Msa0326840:intron | 20.0% |
| !! | GAGAAATAGTAAAATTAACA+TGG | - | chr2_4:37762145-37762164 | None:intergenic | 20.0% |
| !! | TACAATTACTGAAATATACA+GGG | - | chr2_4:37762274-37762293 | None:intergenic | 20.0% |
| !! | ATACAATTACTGAAATATAC+AGG | - | chr2_4:37762275-37762294 | None:intergenic | 20.0% |
| !! | TAGAAATTAATCTCTAACTT+GGG | - | chr2_4:37762436-37762455 | None:intergenic | 20.0% |
| !! | ATAGAAATTAATCTCTAACT+TGG | - | chr2_4:37762437-37762456 | None:intergenic | 20.0% |
| !! | AAATATCTATGTGATTTGAT+TGG | + | chr2_4:37762536-37762555 | Msa0326840:intron | 20.0% |
| !! | ACATTGATAAGAAAAAACAT+GGG | - | chr2_4:37762623-37762642 | None:intergenic | 20.0% |
| !! | AACATTGATAAGAAAAAACA+TGG | - | chr2_4:37762624-37762643 | None:intergenic | 20.0% |
| !! | ATTACATGTCAATTGTTATA+GGG | + | chr2_4:37762697-37762716 | Msa0326840:intron | 20.0% |
| !! | TTAAATCACATAGATATTTG+TGG | - | chr2_4:37762872-37762891 | None:intergenic | 20.0% |
| !! | TTGATCTTATGATTTATTGA+TGG | + | chr2_4:37763126-37763145 | Msa0326840:intron | 20.0% |
| ! | TGGAAATTTGTAGAGTTTAA+CGG | - | chr2_4:37761900-37761919 | None:intergenic | 25.0% |
| ! | CAAAACAAAAAATCAAGAAC+AGG | - | chr2_4:37761928-37761947 | None:intergenic | 25.0% |
| !! | CTAATTCTTTACACTTTTCT+CGG | + | chr2_4:37762306-37762325 | Msa0326840:intron | 25.0% |
| !! | TTCTTTTCACTGAAATGTTT+TGG | + | chr2_4:37762385-37762404 | Msa0326840:intron | 25.0% |
| !!! | ACCAAAATGTCACTTTTATA+GGG | + | chr2_4:37762504-37762523 | Msa0326840:intron | 25.0% |
| !!! | ATTTAATTTGTATACACCGA+CGG | - | chr2_4:37762586-37762605 | None:intergenic | 25.0% |
| ! | GATTACATGTCAATTGTTAT+AGG | + | chr2_4:37762696-37762715 | Msa0326840:intron | 25.0% |
| ! | CTAACTTGAGATATAACAAT+TGG | - | chr2_4:37762744-37762763 | None:intergenic | 25.0% |
| ! | TATCTATGTGATTTAATTGG+AGG | + | chr2_4:37762876-37762895 | Msa0326840:intron | 25.0% |
| ! | AACATTGACAAGAAAAAACA+TGG | - | chr2_4:37762961-37762980 | None:intergenic | 25.0% |
| ! | ACATGTTTCAATCATCATTT+AGG | + | chr2_4:37762995-37763014 | Msa0326840:intron | 25.0% |
| ! | GTCAAAGAAAAATTGGATAA+TGG | + | chr2_4:37764085-37764104 | Msa0326840:CDS | 25.0% |
| ! | TTCTTATGCTATAATATGCT+TGG | + | chr2_4:37764205-37764224 | Msa0326840:CDS | 25.0% |
| GAAATGAGAATGGAAGAAAA+GGG | - | chr2_4:37761595-37761614 | None:intergenic | 30.0% | |
| TGAAATGAGAATGGAAGAAA+AGG | - | chr2_4:37761596-37761615 | None:intergenic | 30.0% | |
| !!! | TTTTGAAATTGGTTTGGTTG+TGG | - | chr2_4:37761619-37761638 | None:intergenic | 30.0% |
| !!! | TGATGGTTTTGAAATTGGTT+TGG | - | chr2_4:37761625-37761644 | None:intergenic | 30.0% |
| !!! | CTTCATGATGGTTTTGAAAT+TGG | - | chr2_4:37761630-37761649 | None:intergenic | 30.0% |
| CAATTTCAAAACCATCATGA+AGG | + | chr2_4:37761628-37761647 | Msa0326840:exon | 30.0% | |
| GTTAAACTCTACAAATTTCC+AGG | + | chr2_4:37761899-37761918 | Msa0326840:CDS | 30.0% | |
| TGAAAGTTAGCTGAATTGAT+TGG | + | chr2_4:37762337-37762356 | Msa0326840:intron | 30.0% | |
| ! | ATTTAGCACAGAATTTTCCT+GGG | + | chr2_4:37762360-37762379 | Msa0326840:intron | 30.0% |
| AACTTGGGATATATAGCAAT+GGG | - | chr2_4:37762421-37762440 | None:intergenic | 30.0% | |
| TAACTTGGGATATATAGCAA+TGG | - | chr2_4:37762422-37762441 | None:intergenic | 30.0% | |
| GATTAATTTCTATGCACAGA+CGG | + | chr2_4:37762444-37762463 | Msa0326840:intron | 30.0% | |
| !! | ACATTTTGGTGTGATTTGAT+TGG | - | chr2_4:37762494-37762513 | None:intergenic | 30.0% |
| !!! | CACCAAAATGTCACTTTTAT+AGG | + | chr2_4:37762503-37762522 | Msa0326840:intron | 30.0% |
| ! | ACCCTATAAAAGTGACATTT+TGG | - | chr2_4:37762508-37762527 | None:intergenic | 30.0% |
| ! | CAATTGTTATAGGGTAGTTT+TGG | + | chr2_4:37762706-37762725 | Msa0326840:intron | 30.0% |
| !! | ACTTAATTTGTATACACCGA+CGG | - | chr2_4:37762923-37762942 | None:intergenic | 30.0% |
| AATTAAGTCCTGCAAGTTAA+TGG | + | chr2_4:37762935-37762954 | Msa0326840:intron | 30.0% | |
| ACTATTGGACAAAGCTTAAT+TGG | + | chr2_4:37763054-37763073 | Msa0326840:intron | 30.0% | |
| ! | TATGATTTATTGATGGCACT+TGG | + | chr2_4:37763133-37763152 | Msa0326840:intron | 30.0% |
| ATGCTAAGTATTCACCATTA+GGG | - | chr2_4:37763349-37763368 | None:intergenic | 30.0% | |
| AAAAACCTTCACAACCTTAA+GGG | + | chr2_4:37763416-37763435 | Msa0326840:CDS | 30.0% | |
| !!! | AGCCTATATGTTTTTTGTGT+TGG | + | chr2_4:37763597-37763616 | Msa0326840:CDS | 30.0% |
| GACCAACACAAAAAACATAT+AGG | - | chr2_4:37763602-37763621 | None:intergenic | 30.0% | |
| TTGGCTGTTATTGATGTTAT+GGG | + | chr2_4:37763761-37763780 | Msa0326840:CDS | 30.0% | |
| ATTGATGTTATGGGAAAGTA+CGG | + | chr2_4:37763770-37763789 | Msa0326840:CDS | 30.0% | |
| GATCTAGGTGAAAATAGTAA+CGG | + | chr2_4:37763926-37763945 | Msa0326840:CDS | 30.0% | |
| ! | AACATCTAAGACAAAAATGC+AGG | + | chr2_4:37764135-37764154 | Msa0326840:CDS | 30.0% |
| AGAATGGAAGAAAAGGGTAA+GGG | - | chr2_4:37761589-37761608 | None:intergenic | 35.0% | |
| AGGTCCGATTAATGAAAATG+AGG | + | chr2_4:37761648-37761667 | Msa0326840:CDS | 35.0% | |
| GGTCCGATTAATGAAAATGA+GGG | + | chr2_4:37761649-37761668 | Msa0326840:CDS | 35.0% | |
| ! | CCTCCCTCATTTTCATTAAT+CGG | - | chr2_4:37761655-37761674 | None:intergenic | 35.0% |
| AAGCAAGACAAGTGGAATTA+GGG | - | chr2_4:37761859-37761878 | None:intergenic | 35.0% | |
| AAAATCAAGAACAGGATACC+TGG | - | chr2_4:37761920-37761939 | None:intergenic | 35.0% | |
| ! | GATTTAGCACAGAATTTTCC+TGG | + | chr2_4:37762359-37762378 | Msa0326840:intron | 35.0% |
| GCAAAAAAGTTTAACTCCGT+CGG | + | chr2_4:37762567-37762586 | Msa0326840:intron | 35.0% | |
| !!! | ACGAAAGCGTCACTTTTATA+GGG | + | chr2_4:37762829-37762848 | Msa0326840:intron | 35.0% |
| GCAAAAAAGTTTAACACCGT+CGG | + | chr2_4:37762904-37762923 | Msa0326840:intron | 35.0% | |
| TGCCAGACATAATTCACTAT+TGG | + | chr2_4:37763039-37763058 | Msa0326840:intron | 35.0% | |
| GTCCAATAGTGAATTATGTC+TGG | - | chr2_4:37763044-37763063 | None:intergenic | 35.0% | |
| !! | AATTGGTGAAGAATTTGCTG+TGG | + | chr2_4:37763071-37763090 | Msa0326840:intron | 35.0% |
| TTAAAGGCTAAGGAACGTAT+CGG | - | chr2_4:37763200-37763219 | None:intergenic | 35.0% | |
| ! | TCCTTAGCCTTTAACAAGAA+AGG | + | chr2_4:37763206-37763225 | Msa0326840:CDS | 35.0% |
| TCCTTTCTTGTTAAAGGCTA+AGG | - | chr2_4:37763210-37763229 | None:intergenic | 35.0% | |
| CATGCTTCCTTTCTTGTTAA+AGG | - | chr2_4:37763216-37763235 | None:intergenic | 35.0% | |
| AAGCTCATAAACACAGTTGA+TGG | + | chr2_4:37763266-37763285 | Msa0326840:CDS | 35.0% | |
| GATGCTAAGTATTCACCATT+AGG | - | chr2_4:37763350-37763369 | None:intergenic | 35.0% | |
| AACTGGAACTGTTATCATCT+GGG | + | chr2_4:37763379-37763398 | Msa0326840:CDS | 35.0% | |
| GAAAAACCTTCACAACCTTA+AGG | + | chr2_4:37763415-37763434 | Msa0326840:CDS | 35.0% | |
| TAACCATGAATGTTCTTTGC+TGG | + | chr2_4:37763468-37763487 | Msa0326840:CDS | 35.0% | |
| !! | ATCATTTTTCAATCCGGGAA+TGG | - | chr2_4:37763516-37763535 | None:intergenic | 35.0% |
| !! | ACGACATCATTTTTCAATCC+GGG | - | chr2_4:37763521-37763540 | None:intergenic | 35.0% |
| !! | CACGACATCATTTTTCAATC+CGG | - | chr2_4:37763522-37763541 | None:intergenic | 35.0% |
| ATGATGTCGTGATGTATGAT+AGG | + | chr2_4:37763531-37763550 | Msa0326840:CDS | 35.0% | |
| TGATGTCGTGATGTATGATA+GGG | + | chr2_4:37763532-37763551 | Msa0326840:CDS | 35.0% | |
| TGGATAAGCAGATTCTGATA+TGG | + | chr2_4:37763654-37763673 | Msa0326840:CDS | 35.0% | |
| GGATAAGCAGATTCTGATAT+GGG | + | chr2_4:37763655-37763674 | Msa0326840:CDS | 35.0% | |
| CATAACATCAATAACAGCCA+AGG | - | chr2_4:37763762-37763781 | None:intergenic | 35.0% | |
| CTTGGCTGTTATTGATGTTA+TGG | + | chr2_4:37763760-37763779 | Msa0326840:CDS | 35.0% | |
| ! | TTATGGGAAAGTACGGTATA+TGG | + | chr2_4:37763777-37763796 | Msa0326840:CDS | 35.0% |
| ! | TATGGGAAAGTACGGTATAT+GGG | + | chr2_4:37763778-37763797 | Msa0326840:CDS | 35.0% |
| AAGAGGACAATAGTGTTAGT+GGG | + | chr2_4:37763894-37763913 | Msa0326840:CDS | 35.0% | |
| TTCCTTTAGCGAGGAAAATT+TGG | + | chr2_4:37763991-37764010 | Msa0326840:CDS | 35.0% | |
| ! | ATCCAAATTTTCCTCGCTAA+AGG | - | chr2_4:37763996-37764015 | None:intergenic | 35.0% |
| TGGAATTGATCTGTTTCCAA+AGG | + | chr2_4:37764033-37764052 | Msa0326840:CDS | 35.0% | |
| ! | CCAATTTTTCTTTGACTGAC+CGG | - | chr2_4:37764081-37764100 | None:intergenic | 35.0% |
| ! | AAAATTGGATAATGGCAGTG+TGG | + | chr2_4:37764093-37764112 | Msa0326840:CDS | 35.0% |
| ! | AAATTGGATAATGGCAGTGT+GGG | + | chr2_4:37764094-37764113 | Msa0326840:CDS | 35.0% |
| ! | ATCTAAGACAAAAATGCAGG+AGG | + | chr2_4:37764138-37764157 | Msa0326840:CDS | 35.0% |
| ATTTCAATCAGGATCAACTC+CGG | + | chr2_4:37764162-37764181 | Msa0326840:CDS | 35.0% | |
| GAAGAAAAGGGTAAGGGTAA+GGG | - | chr2_4:37761583-37761602 | None:intergenic | 40.0% | |
| GAGAATGGAAGAAAAGGGTA+AGG | - | chr2_4:37761590-37761609 | None:intergenic | 40.0% | |
| TGGTTGTGGTGAAATGAGAA+TGG | - | chr2_4:37761605-37761624 | None:intergenic | 40.0% | |
| CATTAATCGGACCTTCATGA+TGG | - | chr2_4:37761642-37761661 | None:intergenic | 40.0% | |
| CCGATTAATGAAAATGAGGG+AGG | + | chr2_4:37761652-37761671 | Msa0326840:CDS | 40.0% | |
| ATGAATCGAGACGGATACAT+CGG | - | chr2_4:37761762-37761781 | None:intergenic | 40.0% | |
| AAGAGGGTTATGAATCGAGA+CGG | - | chr2_4:37761771-37761790 | None:intergenic | 40.0% | |
| GAAGCAAGACAAGTGGAATT+AGG | - | chr2_4:37761860-37761879 | None:intergenic | 40.0% | |
| AATTCCACTTGTCTTGCTTC+TGG | + | chr2_4:37761860-37761879 | Msa0326840:CDS | 40.0% | |
| TTTCAGTGAAAAGAAGACCC+AGG | - | chr2_4:37762380-37762399 | None:intergenic | 40.0% | |
| !!! | CACGAAAGCGTCACTTTTAT+AGG | + | chr2_4:37762828-37762847 | Msa0326840:intron | 40.0% |
| !! | AAACATGGCCATTAACTTGC+AGG | - | chr2_4:37762946-37762965 | None:intergenic | 40.0% |
| ! | ATTTATTGATGGCACTTGGC+AGG | + | chr2_4:37763137-37763156 | Msa0326840:intron | 40.0% |
| AGTTCGAGACAAATATCACG+AGG | + | chr2_4:37763165-37763184 | Msa0326840:CDS | 40.0% | |
| TGGTGAATACTTAGCATCTC+TGG | + | chr2_4:37763352-37763371 | Msa0326840:CDS | 40.0% | |
| TTAGCATCTCTGGATTCAAC+TGG | + | chr2_4:37763362-37763381 | Msa0326840:CDS | 40.0% | |
| CAACTGGAACTGTTATCATC+TGG | + | chr2_4:37763378-37763397 | Msa0326840:CDS | 40.0% | |
| AAAAGATCTAACCCAGTGTC+AGG | - | chr2_4:37763449-37763468 | None:intergenic | 40.0% | |
| ACTCCAGCAAAGAACATTCA+TGG | - | chr2_4:37763474-37763493 | None:intergenic | 40.0% | |
| GAGAAGTTGTTCACTCTTAG+AGG | + | chr2_4:37763563-37763582 | Msa0326840:CDS | 40.0% | |
| !! | TTTTTGTGTTGGTCACCCAA+TGG | + | chr2_4:37763608-37763627 | Msa0326840:CDS | 40.0% |
| GTAGCCATGTACTTTCCATT+GGG | - | chr2_4:37763626-37763645 | None:intergenic | 40.0% | |
| AATCTGCTTATCCAAACCAG+AGG | - | chr2_4:37763648-37763667 | None:intergenic | 40.0% | |
| ! | ATGGGATGTTGATAAGAAGC+AGG | + | chr2_4:37763673-37763692 | Msa0326840:CDS | 40.0% |
| GTTGGAGACTTCATAGATGA+AGG | - | chr2_4:37763815-37763834 | None:intergenic | 40.0% | |
| !! | TGGGCTTCTTTTGTTTGATG+AGG | + | chr2_4:37763868-37763887 | Msa0326840:CDS | 40.0% |
| !! | GCTTCTTTTGTTTGATGAGG+AGG | + | chr2_4:37763871-37763890 | Msa0326840:CDS | 40.0% |
| TTTGTTTGATGAGGAGGAAG+AGG | + | chr2_4:37763877-37763896 | Msa0326840:CDS | 40.0% | |
| GAAGAGGACAATAGTGTTAG+TGG | + | chr2_4:37763893-37763912 | Msa0326840:CDS | 40.0% | |
| ! | AATCTTTTCCTGCTAGTTGG+TGG | - | chr2_4:37763962-37763981 | None:intergenic | 40.0% |
| TAGCGAGGAAAATTTGGATG+AGG | + | chr2_4:37763997-37764016 | Msa0326840:CDS | 40.0% | |
| GAGGAAAATTTGGATGAGGA+TGG | + | chr2_4:37764001-37764020 | Msa0326840:CDS | 40.0% | |
| GATGAGGATGGAGAAGAATA+TGG | + | chr2_4:37764013-37764032 | Msa0326840:CDS | 40.0% | |
| TTCTTGTGAGACTCAACCTT+TGG | - | chr2_4:37764052-37764071 | None:intergenic | 40.0% | |
| AGGTTGAGTCTCACAAGAAA+AGG | + | chr2_4:37764053-37764072 | Msa0326840:CDS | 40.0% | |
| AGTCTCACAAGAAAAGGAAC+CGG | + | chr2_4:37764059-37764078 | Msa0326840:CDS | 40.0% | |
| CCGGTCAGTCAAAGAAAAAT+TGG | + | chr2_4:37764078-37764097 | Msa0326840:CDS | 40.0% | |
| ! | TGTGGGATTTAGAAGCACAA+TGG | + | chr2_4:37764111-37764130 | Msa0326840:CDS | 40.0% |
| CGATGGATACTCTCATATTG+AGG | + | chr2_4:37764249-37764268 | Msa0326840:CDS | 40.0% | |
| GGAAGAAAAGGGTAAGGGTA+AGG | - | chr2_4:37761584-37761603 | None:intergenic | 45.0% | |
| AGATCCAGAAGCAAGACAAG+TGG | - | chr2_4:37761867-37761886 | None:intergenic | 45.0% | |
| TCGAAAGCTAAACCAGTGAC+AGG | - | chr2_4:37763326-37763345 | None:intergenic | 45.0% | |
| !! | GGTTTAGCTTTCGACCCTAA+TGG | + | chr2_4:37763332-37763351 | Msa0326840:CDS | 45.0% |
| ! | TGTGAAGGTTTTTCCCTGAG+TGG | - | chr2_4:37763409-37763428 | None:intergenic | 45.0% |
| CTATGCCCTTAAGGTTGTGA+AGG | - | chr2_4:37763424-37763443 | None:intergenic | 45.0% | |
| TTTCAATCCGGGAATGGCTA+AGG | - | chr2_4:37763510-37763529 | None:intergenic | 45.0% | |
| ! | GTCACCCAATGGAAAGTACA+TGG | + | chr2_4:37763619-37763638 | Msa0326840:CDS | 45.0% |
| GGTAGCCATGTACTTTCCAT+TGG | - | chr2_4:37763627-37763646 | None:intergenic | 45.0% | |
| ! | CGATGAAAGAGTGTGTTGCA+TGG | + | chr2_4:37763715-37763734 | Msa0326840:CDS | 45.0% |
| ! | AAAGAGTGTGTTGCATGGCA+TGG | + | chr2_4:37763720-37763739 | Msa0326840:CDS | 45.0% |
| ATCTATGAAGTCTCCAACCG+AGG | + | chr2_4:37763817-37763836 | Msa0326840:CDS | 45.0% | |
| AGCATAGGTATATCCTCGGT+TGG | - | chr2_4:37763833-37763852 | None:intergenic | 45.0% | |
| AACCGAGGATATACCTATGC+TGG | + | chr2_4:37763832-37763851 | Msa0326840:CDS | 45.0% | |
| ACCGAGGATATACCTATGCT+GGG | + | chr2_4:37763833-37763852 | Msa0326840:CDS | 45.0% | |
| ATACCTATGCTGGGCAAGAA+CGG | + | chr2_4:37763842-37763861 | Msa0326840:CDS | 45.0% | |
| ! | CGCAATCTTTTCCTGCTAGT+TGG | - | chr2_4:37763965-37763984 | None:intergenic | 45.0% |
| !! | ATGCAGGAGGCATTTCAATC+AGG | + | chr2_4:37764151-37764170 | Msa0326840:CDS | 45.0% |
| !!! | CATAAGAAGCGCCTTTTTCC+AGG | - | chr2_4:37764193-37764212 | None:intergenic | 45.0% |
| ATAACCACTGTCGATCACGA+TGG | + | chr2_4:37764232-37764251 | Msa0326840:CDS | 45.0% | |
| !!! | ATTGAAATTTTAAATAAAAT+TGG | + | chr2_4:37761964-37761983 | Msa0326840:intron | 5.0% |
| !!! | TTGAAATTTTAAATAAAATT+GGG | + | chr2_4:37761965-37761984 | Msa0326840:intron | 5.0% |
| !! | TAAAATATAAAATAATGATT+AGG | - | chr2_4:37762185-37762204 | None:intergenic | 5.0% |
| TTCCTTCTGCTCGCTCCTAT+GGG | + | chr2_4:37761700-37761719 | Msa0326840:CDS | 50.0% | |
| GGATACATCGGAAGAGGAAG+CGG | - | chr2_4:37761750-37761769 | None:intergenic | 50.0% | |
| CCAAAGCAGTAACACCGTCA+CGG | - | chr2_4:37761829-37761848 | None:intergenic | 50.0% | |
| ! | TATTGATGGCACTTGGCAGG+TGG | + | chr2_4:37763140-37763159 | Msa0326840:intron | 50.0% |
| !! | AGTTGATGGCTCCATTGCGA+GGG | + | chr2_4:37763280-37763299 | Msa0326840:CDS | 50.0% |
| TCCATTGCGAGGGTTCTCAA+AGG | + | chr2_4:37763290-37763309 | Msa0326840:CDS | 50.0% | |
| CCATTGCGAGGGTTCTCAAA+GGG | + | chr2_4:37763291-37763310 | Msa0326840:CDS | 50.0% | |
| ATCATCTGGGAACTCCACTC+AGG | + | chr2_4:37763392-37763411 | Msa0326840:CDS | 50.0% | |
| TCATCTGGGAACTCCACTCA+GGG | + | chr2_4:37763393-37763412 | Msa0326840:CDS | 50.0% | |
| TGTCAGGAGCTATGCCCTTA+AGG | - | chr2_4:37763433-37763452 | None:intergenic | 50.0% | |
| GTTCTTTGCTGGAGTCCTGA+TGG | + | chr2_4:37763479-37763498 | Msa0326840:CDS | 50.0% | |
| ATGGCTAAGGTCTCACCATC+AGG | - | chr2_4:37763497-37763516 | None:intergenic | 50.0% | |
| ! | GGAAAGTACATGGCTACCTC+TGG | + | chr2_4:37763629-37763648 | Msa0326840:CDS | 50.0% |
| GTACATGGCTACCTCTGGTT+TGG | + | chr2_4:37763634-37763653 | Msa0326840:CDS | 50.0% | |
| TGCATGGCATGGAAGCCAAT+CGG | + | chr2_4:37763731-37763750 | Msa0326840:CDS | 50.0% | |
| GCCCAGCATAGGTATATCCT+CGG | - | chr2_4:37763837-37763856 | None:intergenic | 50.0% | |
| TTACCGTTCTTGCCCAGCAT+AGG | - | chr2_4:37763848-37763867 | None:intergenic | 50.0% | |
| ATGCTGGGCAAGAACGGTAA+TGG | + | chr2_4:37763848-37763867 | Msa0326840:CDS | 50.0% | |
| TGCTGGGCAAGAACGGTAAT+GGG | + | chr2_4:37763849-37763868 | Msa0326840:CDS | 50.0% | |
| AGTGGGAGCTTGAGTGATCT+AGG | + | chr2_4:37763911-37763930 | Msa0326840:CDS | 50.0% | |
| AGTTTGAGCCACCAACTAGC+AGG | + | chr2_4:37763951-37763970 | Msa0326840:CDS | 50.0% | |
| GCGCAAACATTCCTTTAGCG+AGG | + | chr2_4:37763982-37764001 | Msa0326840:CDS | 50.0% | |
| GTATCCATCGTGATCGACAG+TGG | - | chr2_4:37764239-37764258 | None:intergenic | 50.0% | |
| CTTCCTTCTGCTCGCTCCTA+TGG | + | chr2_4:37761699-37761718 | Msa0326840:CDS | 55.0% | |
| TGACGAGATGCTCGGCTTTC+TGG | - | chr2_4:37761727-37761746 | None:intergenic | 55.0% | |
| CGAGACGGATACATCGGAAG+AGG | - | chr2_4:37761756-37761775 | None:intergenic | 55.0% | |
| GAGCGGAAGGAGGAAGAAGA+GGG | - | chr2_4:37761787-37761806 | None:intergenic | 55.0% | |
| AGAATCTTGGGAGCGGAAGG+AGG | - | chr2_4:37761797-37761816 | None:intergenic | 55.0% | |
| ! | GTGACGGAGAATCTTGGGAG+CGG | - | chr2_4:37761804-37761823 | None:intergenic | 55.0% |
| !! | CGGTGGTGACGGAGAATCTT+GGG | - | chr2_4:37761809-37761828 | None:intergenic | 55.0% |
| !! | ACGGTGGTGACGGAGAATCT+TGG | - | chr2_4:37761810-37761829 | None:intergenic | 55.0% |
| ATTCTCCGTCACCACCGTGA+CGG | + | chr2_4:37761812-37761831 | Msa0326840:CDS | 55.0% | |
| TAACACCGTCACGGTGGTGA+CGG | - | chr2_4:37761820-37761839 | None:intergenic | 55.0% | |
| AAGCAGTAACACCGTCACGG+TGG | - | chr2_4:37761826-37761845 | None:intergenic | 55.0% | |
| !! | CCGTGACGGTGTTACTGCTT+TGG | + | chr2_4:37761826-37761845 | Msa0326840:CDS | 55.0% |
| ! | GGAAGCATGTTAGCAGCTGC+AGG | + | chr2_4:37763227-37763246 | Msa0326840:CDS | 55.0% |
| !! | CAGTTGATGGCTCCATTGCG+AGG | + | chr2_4:37763279-37763298 | Msa0326840:CDS | 55.0% |
| ! | CCCTTTGAGAACCCTCGCAA+TGG | - | chr2_4:37763294-37763313 | None:intergenic | 55.0% |
| ! | AGGGTTCTCAAAGGGCACAG+AGG | + | chr2_4:37763299-37763318 | Msa0326840:CDS | 55.0% |
| ! | AAGGGCATAGCTCCTGACAC+TGG | + | chr2_4:37763434-37763453 | Msa0326840:CDS | 55.0% |
| AGGGCATAGCTCCTGACACT+GGG | + | chr2_4:37763435-37763454 | Msa0326840:CDS | 55.0% | |
| GGTGAGACCTTAGCCATTCC+CGG | + | chr2_4:37763500-37763519 | Msa0326840:CDS | 55.0% | |
| GCATGGCATGGAAGCCAATC+GGG | + | chr2_4:37763732-37763751 | Msa0326840:CDS | 55.0% | |
| GAAGCCAATCGGGAATGCCT+TGG | + | chr2_4:37763742-37763761 | Msa0326840:CDS | 55.0% | |
| ! | ACAGCCAAGGCATTCCCGAT+TGG | - | chr2_4:37763749-37763768 | None:intergenic | 55.0% |
| AGGGAGGCCCACACCCAAAA+AGG | + | chr2_4:37761668-37761687 | Msa0326840:CDS | 60.0% | |
| GAGGCCCACACCCAAAAAGG+CGG | + | chr2_4:37761671-37761690 | Msa0326840:CDS | 60.0% | |
| !!! | ACGGCCGCCTTTTTGGGTGT+GGG | - | chr2_4:37761678-37761697 | None:intergenic | 60.0% |
| !! | GGAAGCACGGCCGCCTTTTT+GGG | - | chr2_4:37761684-37761703 | None:intergenic | 60.0% |
| !! | AGGAAGCACGGCCGCCTTTT+TGG | - | chr2_4:37761685-37761704 | None:intergenic | 60.0% |
| GGAGCGAGCAGAAGGAAGCA+CGG | - | chr2_4:37761697-37761716 | None:intergenic | 60.0% | |
| GTCCCATAGGAGCGAGCAGA+AGG | - | chr2_4:37761705-37761724 | None:intergenic | 60.0% | |
| ! | GCTCGGCTTTCTGGTCCCAT+AGG | - | chr2_4:37761718-37761737 | None:intergenic | 60.0% |
| GGAAGCGGTGACGAGATGCT+CGG | - | chr2_4:37761735-37761754 | None:intergenic | 60.0% | |
| GGAGCGGAAGGAGGAAGAAG+AGG | - | chr2_4:37761788-37761807 | None:intergenic | 60.0% | |
| CGGAGAATCTTGGGAGCGGA+AGG | - | chr2_4:37761800-37761819 | None:intergenic | 60.0% | |
| AGCAGCTGCAGGTGACGATG+AGG | + | chr2_4:37763238-37763257 | Msa0326840:CDS | 60.0% | |
| GCAGCTGCAGGTGACGATGA+GGG | + | chr2_4:37763239-37763258 | Msa0326840:CDS | 60.0% | |
| CTCCGGTGCAGCCTGGAAAA+AGG | + | chr2_4:37764179-37764198 | Msa0326840:CDS | 60.0% | |
| ! | CGCCTTTTTCCAGGCTGCAC+CGG | - | chr2_4:37764184-37764203 | None:intergenic | 60.0% |
| !!! | CACGGCCGCCTTTTTGGGTG+TGG | - | chr2_4:37761679-37761698 | None:intergenic | 65.0% |
| GGGCACAGAGGACCTGTCAC+TGG | + | chr2_4:37763311-37763330 | Msa0326840:CDS | 65.0% | |
| GGATCAACTCCGGTGCAGCC+TGG | + | chr2_4:37764172-37764191 | Msa0326840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 37761560 | 37764282 | 37761560 | ID=Msa0326840;Name=Msa0326840 |
| chr2_4 | mRNA | 37761560 | 37764282 | 37761560 | ID=Msa0326840-mRNA-1;Parent=Msa0326840;Name=Msa0326840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=84|1|0.5|1|1|1|2|0|466 |
| chr2_4 | exon | 37761560 | 37761920 | 37761560 | ID=Msa0326840-mRNA-1:exon:11427;Parent=Msa0326840-mRNA-1 |
| chr2_4 | exon | 37763159 | 37764282 | 37763159 | ID=Msa0326840-mRNA-1:exon:11428;Parent=Msa0326840-mRNA-1 |
| chr2_4 | five_prime_UTR | 37761560 | 37761643 | 37761560 | ID=Msa0326840-mRNA-1:five_prime_utr;Parent=Msa0326840-mRNA-1 |
| chr2_4 | CDS | 37761644 | 37761920 | 37761644 | ID=Msa0326840-mRNA-1:cds;Parent=Msa0326840-mRNA-1 |
| chr2_4 | CDS | 37763159 | 37764282 | 37763159 | ID=Msa0326840-mRNA-1:cds;Parent=Msa0326840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
