AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053070 MtrunA17_Chr1g0151731 89.286 560 25 3 1 559 1 526 0.0 1015
Msa0053070 MtrunA17_Chr6g0488071 29.372 446 256 10 1 438 1 395 5.69e-43 160
Msa0053070 MtrunA17_Chr6g0488141 28.634 454 249 12 1 447 1 386 2.14e-40 152
Msa0053070 MtrunA17_Chr6g0488291 31.835 267 162 7 1 257 1 257 3.30e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053070 AT5G11780.1 32.353 544 281 19 13 548 16 480 2.79e-68 229

Find 153 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCCTGACTGCTTTAT+TGG 0.164340 1_2:+7482803 Msa0053070:CDS
TGTGACGGTGGTGGTGAATC+TGG 0.185538 1_2:+7481576 Msa0053070:CDS
TCCATGTATAGAACTTAAAA+AGG 0.209498 1_2:-7484658 None:intergenic
TCCATGTATAGAAGTTAAAA+AGG 0.215610 1_2:-7484724 None:intergenic
GAACACGGATTGGCAATATT+TGG 0.248245 1_2:+7484555 Msa0053070:CDS
AACTTCACTGGTTGCGGTTA+AGG 0.257652 1_2:+7481287 Msa0053070:CDS
TTTCTCAGTTCCAAACAAAA+TGG 0.266281 1_2:+7481041 Msa0053070:exon
CTCAAGTAACCTCTCTATAA+AGG 0.292180 1_2:-7483086 None:intergenic
TTCCCATTCAATTGATCAAC+TGG 0.297157 1_2:+7484166 Msa0053070:CDS
GGGTTGTGAGGTTGGTTATT+TGG 0.299959 1_2:+7481668 Msa0053070:CDS
AATTGATAGCGAAATCTTTC+AGG 0.305089 1_2:-7483952 None:intergenic
TGATGCTAGAGTTGGGGTTT+TGG 0.312253 1_2:+7481512 Msa0053070:CDS
TGAGGTGAAATCGGTGAAAT+TGG 0.317673 1_2:-7481160 None:intergenic
GGTAGCACCGTTGCGGTATT+CGG 0.322536 1_2:-7481139 None:intergenic
TGTGAGGTTGGTTATTTGGC+TGG 0.324431 1_2:+7481672 Msa0053070:CDS
TTCAGGTTATGACGGGGTTT+CGG 0.342353 1_2:+7481793 Msa0053070:CDS
GTTGCATGCTGCAGCAGTTC+AGG 0.345498 1_2:+7481776 Msa0053070:CDS
AAGAGTGAAGTTGAGGTTAA+TGG 0.346324 1_2:+7481486 Msa0053070:CDS
GTTTGAGATTTATCGTTTGA+TGG 0.347535 1_2:+7481386 Msa0053070:CDS
GCAATATTTGGTTGTGGAAC+TGG 0.348987 1_2:+7484567 Msa0053070:CDS
ACTTCACTGGTTGCGGTTAA+GGG 0.353217 1_2:+7481288 Msa0053070:CDS
GTGAGGTTGGTTATTTGGCT+GGG 0.359801 1_2:+7481673 Msa0053070:CDS
CCCTTGAATTTCATACTAAT+AGG 0.362321 1_2:+7481247 Msa0053070:CDS
GGTTCGGAAGGGGATTGAAA+TGG 0.367232 1_2:+7481647 Msa0053070:CDS
TTTGCCAGTGATCTCCTTGC+TGG 0.370811 1_2:+7482867 Msa0053070:CDS
TCAAGTAACCTCTCTATAAA+GGG 0.371840 1_2:-7483085 None:intergenic
GTTCGGAAGGGGATTGAAAT+GGG 0.378899 1_2:+7481648 Msa0053070:CDS
TGAAAGATTTCGCTATCAAT+TGG 0.402702 1_2:+7483954 Msa0053070:CDS
ATTGAAATGGGTTGTGAGGT+TGG 0.406186 1_2:+7481660 Msa0053070:CDS
ACCTATTAGTATGAAATTCA+AGG 0.406338 1_2:-7481248 None:intergenic
TGAGTGATGGGGTTCGGAAG+GGG 0.411569 1_2:+7481637 Msa0053070:CDS
GTGACGGTGGTGGTGAATCT+GGG 0.413825 1_2:+7481577 Msa0053070:CDS
AAGGAGATCACTGGCAAAGC+TGG 0.420916 1_2:-7482862 None:intergenic
TTCTAGAACTTCACTGGTTG+CGG 0.421114 1_2:+7481281 Msa0053070:CDS
TACAGGGAAAAGGGTGATCA+TGG 0.421383 1_2:+7484102 Msa0053070:intron
AATGGTGGTGATGCTAGAGT+TGG 0.423330 1_2:+7481504 Msa0053070:CDS
TAGAACCACAGAAGTGGAAT+TGG 0.423743 1_2:-7481219 None:intergenic
ATGGTGGTGATGCTAGAGTT+GGG 0.425809 1_2:+7481505 Msa0053070:CDS
ATTTATCGTTTGATGGGTTG+TGG 0.428044 1_2:+7481393 Msa0053070:CDS
GGGGATCGCGAGAGGGGAGA+AGG 0.432937 1_2:+7481746 Msa0053070:CDS
AGGAACTGTGCCTATGCTTC+CGG 0.434210 1_2:+7484689 Msa0053070:CDS
AAATTGAGGGTTTGGTGGAA+GGG 0.439420 1_2:+7481433 Msa0053070:CDS
GAGAAATTGTTGAAGGAAGT+TGG 0.441841 1_2:-7481024 None:intergenic
GTTGGTGGTGATTGTTTGAA+AGG 0.443415 1_2:+7481600 Msa0053070:CDS
CGAACCCCATCACTCACAAA+AGG 0.448596 1_2:-7481630 None:intergenic
TCTGCTTGGTTACAGGGAAA+AGG 0.448658 1_2:+7484092 Msa0053070:intron
AATTGAGGGTTTGGTGGAAG+GGG 0.450119 1_2:+7481434 Msa0053070:CDS
GTGAGTGATGGGGTTCGGAA+GGG 0.455588 1_2:+7481636 Msa0053070:CDS
CTGCTTGGTTACAGGGAAAA+GGG 0.455759 1_2:+7484093 Msa0053070:intron
AACCCAGTTGATCAATTGAA+TGG 0.459406 1_2:-7484169 None:intergenic
TTGGTGGTGATTGTTTGAAA+GGG 0.460482 1_2:+7481601 Msa0053070:CDS
GAAGAGTGAAATTGAGGGTT+TGG 0.461305 1_2:+7481425 Msa0053070:CDS
TCATTCATTAATTGTCAAGC+TGG 0.461966 1_2:+7483908 Msa0053070:CDS
GAAATTGAGGGTTTGGTGGA+AGG 0.462960 1_2:+7481432 Msa0053070:CDS
AAGAACTGTGCCTATGCTTC+CGG 0.464773 1_2:+7484623 Msa0053070:CDS
TGTGAGTGATGGGGTTCGGA+AGG 0.467210 1_2:+7481635 Msa0053070:CDS
GCAGCAGTTCAGGTTATGAC+GGG 0.467718 1_2:+7481786 Msa0053070:CDS
TGAGGTTGGTTATTTGGCTG+GGG 0.467778 1_2:+7481674 Msa0053070:CDS
AACTCACTTATAAGATCAAT+AGG 0.470267 1_2:-7484243 None:intergenic
AGAAGTGAAGAGTGAAATTG+AGG 0.470560 1_2:+7481419 Msa0053070:CDS
CTGCTTGTTTCGTGTTGCGA+TGG 0.470961 1_2:+7481321 Msa0053070:CDS
GGAGAAGATTGAGGTGAAAT+CGG 0.471563 1_2:-7481169 None:intergenic
TGCGGTATTCGGTTAGGAAA+CGG 0.474041 1_2:-7481128 None:intergenic
AGCATTGGTTGGTAGTAAAG+TGG 0.474818 1_2:-7481090 None:intergenic
TTTATCGTTTGATGGGTTGT+GGG 0.480718 1_2:+7481394 Msa0053070:CDS
TTCTATACATGGAGGGTTCG+TGG 0.487374 1_2:+7484734 Msa0053070:CDS
ACAACCACTCCCTAAAACCT+AGG 0.490065 1_2:+7480987 Msa0053070:five_prime_UTR
AGCTGCTGAGGAACACGGAT+TGG 0.491886 1_2:+7484545 Msa0053070:CDS
TTTGAGATTTATCGTTTGAT+GGG 0.493525 1_2:+7481387 Msa0053070:CDS
CACCGTTGCGGTATTCGGTT+AGG 0.495050 1_2:-7481134 None:intergenic
GTACTATTCTGTGATGATGA+TGG 0.496979 1_2:+7483880 Msa0053070:CDS
TCATCATCACAGAATAGTAC+AGG 0.498391 1_2:-7483877 None:intergenic
CAGTGGCATCATAATATGAT+TGG 0.500929 1_2:-7483061 None:intergenic
ACCCAGTTGATCAATTGAAT+GGG 0.505767 1_2:-7484168 None:intergenic
TTGATTGATTCTTTGAGCAT+TGG 0.507350 1_2:-7481105 None:intergenic
GTGGACGCCGTAAGTTTGTC+TGG 0.507922 1_2:+7484798 Msa0053070:CDS
AGAAGCTTCTAGAACTTCAC+TGG 0.511669 1_2:+7481275 Msa0053070:CDS
CTTATGTAAATTCCTTCTGT+AGG 0.514311 1_2:+7484136 Msa0053070:CDS
TGGATGGTTGATTGTGACGG+TGG 0.519274 1_2:+7481564 Msa0053070:CDS
GCATTGGTTGGTAGTAAAGT+GGG 0.519982 1_2:-7481089 None:intergenic
GCAACTAGAAAACGCAAAGA+AGG 0.525322 1_2:+7484852 Msa0053070:CDS
GAAGTGAAGAGTGAAATTGA+GGG 0.532302 1_2:+7481420 Msa0053070:CDS
GAGTGAAATTGAGGGTTTGG+TGG 0.538067 1_2:+7481428 Msa0053070:CDS
TGGTGGTGATGCTAGAGTTG+GGG 0.538164 1_2:+7481506 Msa0053070:CDS
GGATTGGCAATATTTGGTTG+TGG 0.538609 1_2:+7484561 Msa0053070:CDS
TCACAATCAACCATCCAAAC+CGG 0.540267 1_2:-7481558 None:intergenic
ATGGTTGATTGTGACGGTGG+TGG 0.541207 1_2:+7481567 Msa0053070:CDS
TAAGCACCAATAAAGCAGTC+AGG 0.543520 1_2:-7482809 None:intergenic
AGCGAAATCTTTCAGGCTGT+CGG 0.543878 1_2:-7483945 None:intergenic
TGAGGCGGGGATCGCGAGAG+GGG 0.544183 1_2:+7481740 Msa0053070:CDS
TTGTATGAAGAGTGAAGTTG+AGG 0.545439 1_2:+7481479 Msa0053070:CDS
GATCAATTGAATGGGAATGC+AGG 0.547063 1_2:-7484160 None:intergenic
TTGTTGATTTGATACCGGTT+TGG 0.550293 1_2:+7481544 Msa0053070:CDS
GAACCCCATCACTCACAAAA+GGG 0.551030 1_2:-7481629 None:intergenic
CCTATTAGTATGAAATTCAA+GGG 0.552310 1_2:-7481247 None:intergenic
ACCTCTCTATAAAGGGGCAG+TGG 0.553165 1_2:-7483078 None:intergenic
GGTGGTGGTGAATCTGGGGT+TGG 0.555180 1_2:+7481582 Msa0053070:CDS
TTTGAGGCGGGGATCGCGAG+AGG 0.561298 1_2:+7481738 Msa0053070:CDS
AACCACAGAAGTGGAATTGG+TGG 0.561727 1_2:-7481216 None:intergenic
GGTGGTGAATCTGGGGTTGG+TGG 0.563041 1_2:+7481585 Msa0053070:CDS
ATCATCACCAGACAAACTTA+CGG 0.564664 1_2:-7484805 None:intergenic
TGCAGCAGTTCAGGTTATGA+CGG 0.565355 1_2:+7481785 Msa0053070:CDS
TGGAACTGAGAAATTGTTGA+AGG 0.565877 1_2:-7481031 None:intergenic
TGATTTGATACCGGTTTGGA+TGG 0.570864 1_2:+7481548 Msa0053070:CDS
CAACCACTCCCTAAAACCTA+GGG 0.570898 1_2:+7480988 Msa0053070:five_prime_UTR
AGAGATGATGAGTAAGTACA+TGG 0.571721 1_2:-7480958 None:intergenic
TGTTCAACCACCGGAAGCAT+AGG 0.572107 1_2:-7484699 None:intergenic
ACCCACCAATTCCACTTCTG+TGG 0.572448 1_2:+7481214 Msa0053070:CDS
TTGATTCTTTGAGCATTGGT+TGG 0.573059 1_2:-7481101 None:intergenic
CTTCTAGCTGCTGAGGAACA+CGG 0.574329 1_2:+7484540 Msa0053070:CDS
AAAACGCAAAGAAGGAATTG+AGG 0.576892 1_2:+7484860 Msa0053070:CDS
ATGGATGTGTCGCGATGAAG+AGG 0.578592 1_2:+7481340 Msa0053070:CDS
AGCGGCATAGACAGAAAGAT+CGG 0.579831 1_2:+7484201 Msa0053070:CDS
GCCACTGCCCCTTTATAGAG+AGG 0.580203 1_2:+7483077 Msa0053070:CDS
TGTTTGACCACCGGAAGCAT+AGG 0.585831 1_2:-7484633 None:intergenic
TGAAGTGGTGTGAATTGCGC+GGG 0.586090 1_2:-7481190 None:intergenic
TCCCATTCAATTGATCAACT+GGG 0.586710 1_2:+7484167 Msa0053070:CDS
GGGGATTGAAATGGGTTGTG+AGG 0.589661 1_2:+7481656 Msa0053070:CDS
ACAGGGAAAAGGGTGATCAT+GGG 0.591860 1_2:+7484103 Msa0053070:intron
GTTTGGATGGTTGATTGTGA+CGG 0.592189 1_2:+7481561 Msa0053070:CDS
TCACTGTTGCTTGAATGTAC+AGG 0.592735 1_2:-7484949 None:intergenic
CATTGGTTGGTAGTAAAGTG+GGG 0.592808 1_2:-7481088 None:intergenic
GCTGAATAGAACCACAGAAG+TGG 0.594045 1_2:-7481225 None:intergenic
TTGAGGCGGGGATCGCGAGA+GGG 0.594625 1_2:+7481739 Msa0053070:CDS
AGTCAGCTATACAGTCTGCT+AGG 0.596408 1_2:+7483990 Msa0053070:CDS
TGGAATTGGTGGGTCTGAAG+TGG 0.597501 1_2:-7481205 None:intergenic
TTATCGTTTGATGGGTTGTG+GGG 0.599982 1_2:+7481395 Msa0053070:CDS
TGAAATTGGTAGCACCGTTG+CGG 0.601583 1_2:-7481146 None:intergenic
AACTGGCAAGCATCGTGCAA+AGG 0.604651 1_2:+7484584 Msa0053070:CDS
ATTGGTTGGTAGTAAAGTGG+GGG 0.609441 1_2:-7481087 None:intergenic
AGAATGGCTTCTAGCTGCTG+AGG 0.613476 1_2:+7484533 Msa0053070:intron
CTGAAGTGGTGTGAATTGCG+CGG 0.614652 1_2:-7481191 None:intergenic
TCAATAGGAGTGGAAACACT+TGG 0.615988 1_2:-7484228 None:intergenic
CTTACCAGCAAGGAGATCAC+TGG 0.624906 1_2:-7482871 None:intergenic
AACTGTGCCTATGCTTCCGG+TGG 0.625094 1_2:+7484626 Msa0053070:CDS
TGACGGTGGTGGTGAATCTG+GGG 0.625322 1_2:+7481578 Msa0053070:CDS
GTACATTCAAGCAACAGTGA+TGG 0.626221 1_2:+7484952 Msa0053070:CDS
AACTGTGCCTATGCTTCCGG+TGG 0.628824 1_2:+7484692 Msa0053070:CDS
CATCATCACAGAATAGTACA+GGG 0.630428 1_2:-7483876 None:intergenic
CAAGTAACCTCTCTATAAAG+GGG 0.638397 1_2:-7483084 None:intergenic
ACTTATAAGATCAATAGGAG+TGG 0.641994 1_2:-7484238 None:intergenic
GGGAATGCAGGACCTACAGA+AGG 0.642543 1_2:-7484148 None:intergenic
CAGCAGTTCAGGTTATGACG+GGG 0.647188 1_2:+7481787 Msa0053070:CDS
AATTGCGCGGGAGAAGATTG+AGG 0.647307 1_2:-7481178 None:intergenic
ACCACAGAAGTGGAATTGGT+GGG 0.661008 1_2:-7481215 None:intergenic
TATGATGGTACTTACCAGCA+AGG 0.661766 1_2:-7482881 None:intergenic
TTCCTAACCGAATACCGCAA+CGG 0.665195 1_2:+7481132 Msa0053070:CDS
AACTGGGTTACTCGTCAAAG+CGG 0.670412 1_2:+7484183 Msa0053070:CDS
CGATAAATCTCAAACACCAA+CGG 0.671461 1_2:-7481378 None:intergenic
TTGGTTGGTAGTAAAGTGGG+GGG 0.687195 1_2:-7481086 None:intergenic
AGTGAAGTTGAGGTTAATGG+TGG 0.690712 1_2:+7481489 Msa0053070:CDS
TGTGTCGCGATGAAGAGGAT+CGG 0.711856 1_2:+7481345 Msa0053070:CDS
TGTAGAGATGCATGATACTG+TGG 0.718185 1_2:+7484779 Msa0053070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAAGTTATACAAATAA+AGG - chr1_2:7482717-7482736 None:intergenic 15.0%
!!! TATAATCTTTTCTGTAAAAT+AGG - chr1_2:7483356-7483375 None:intergenic 15.0%
!!! TATTTTACAGAAAAGATTAT+AGG + chr1_2:7483355-7483374 Msa0053070:intron 15.0%
!! AAAATAAACTTATATGAGTA+GGG - chr1_2:7483401-7483420 None:intergenic 15.0%
!! AAAAATAAACTTATATGAGT+AGG - chr1_2:7483402-7483421 None:intergenic 15.0%
!! GAAAGAATAATAAAAGAAAA+TGG - chr1_2:7484284-7484303 None:intergenic 15.0%
!!! TTTCGGAATTTTTACTTTTT+GGG + chr1_2:7481810-7481829 Msa0053070:CDS 20.0%
!! TATAAAAAACAGAACAAAAC+AGG - chr1_2:7483223-7483242 None:intergenic 20.0%
!! ATAATGTTTGATAAATGAAC+TGG - chr1_2:7483280-7483299 None:intergenic 20.0%
!!! TATTTTTCATGCGATAATTT+AGG + chr1_2:7483415-7483434 Msa0053070:intron 20.0%
!!! AATTGAAATTTTTGTGATGT+TGG + chr1_2:7483497-7483516 Msa0053070:intron 20.0%
!!! GAAAACTATGATTTAGATTT+TGG + chr1_2:7483519-7483538 Msa0053070:intron 20.0%
!! AATAATAAAAGAAAATGGAG+GGG - chr1_2:7484279-7484298 None:intergenic 20.0%
!! GAATAATAAAAGAAAATGGA+GGG - chr1_2:7484280-7484299 None:intergenic 20.0%
!! AGAATAATAAAAGAAAATGG+AGG - chr1_2:7484281-7484300 None:intergenic 20.0%
!!! TTTTTAAAAAAAGTTCAGCA+AGG + chr1_2:7484336-7484355 Msa0053070:intron 20.0%
! CCTATTAGTATGAAATTCAA+GGG - chr1_2:7481250-7481269 None:intergenic 25.0%
! ACCTATTAGTATGAAATTCA+AGG - chr1_2:7481251-7481270 None:intergenic 25.0%
!! TTTGAGATTTATCGTTTGAT+GGG + chr1_2:7481387-7481406 Msa0053070:CDS 25.0%
!!! GAAAATGTGTTTGATTTTTG+AGG + chr1_2:7481722-7481741 Msa0053070:CDS 25.0%
!!! GTTTCGGAATTTTTACTTTT+TGG + chr1_2:7481809-7481828 Msa0053070:CDS 25.0%
!! ACTACAATTTAAAATCATGC+TGG - chr1_2:7481864-7481883 None:intergenic 25.0%
!!! AGGTTTTATAAAATGGATTG+CGG - chr1_2:7482009-7482028 None:intergenic 25.0%
!!! GTCATCAAGGTTTTATAAAA+TGG - chr1_2:7482016-7482035 None:intergenic 25.0%
! GATAATAAGCACTTATGTAT+AGG - chr1_2:7482290-7482309 None:intergenic 25.0%
! GAGTTTATATGTAAGTTGTT+TGG - chr1_2:7482366-7482385 None:intergenic 25.0%
! TCATTGCAACAAAATTGTTA+AGG - chr1_2:7482431-7482450 None:intergenic 25.0%
!! CATAATTATATTGAGGCATT+TGG - chr1_2:7482473-7482492 None:intergenic 25.0%
! TGCCTCAATATAATTATGTT+CGG + chr1_2:7482475-7482494 Msa0053070:intron 25.0%
! AATTAAATTTCACCAAGATC+TGG - chr1_2:7482551-7482570 None:intergenic 25.0%
!!! TTGTGTTTTAATACTCAAGT+TGG + chr1_2:7482589-7482608 Msa0053070:intron 25.0%
! AGCATTACTTAGTTGTAATT+CGG + chr1_2:7482910-7482929 Msa0053070:intron 25.0%
! TTAGTTGTAATTCGGAATTA+AGG + chr1_2:7482918-7482937 Msa0053070:intron 25.0%
! TAGTTGTAATTCGGAATTAA+GGG + chr1_2:7482919-7482938 Msa0053070:intron 25.0%
! TAATCTTACACATAGTTTCA+TGG - chr1_2:7482979-7482998 None:intergenic 25.0%
! AAACATTATCTTAGATTAGC+TGG + chr1_2:7483291-7483310 Msa0053070:intron 25.0%
!! TCTTTTCTGTAAAATAGGTT+TGG - chr1_2:7483351-7483370 None:intergenic 25.0%
! TTGATTCTGTTTATTGATGT+TGG + chr1_2:7483458-7483477 Msa0053070:intron 25.0%
!! CTTTTCAAAGACAATATACT+GGG - chr1_2:7483611-7483630 None:intergenic 25.0%
!! CAGTATATTGTCTTTGAAAA+GGG + chr1_2:7483610-7483629 Msa0053070:intron 25.0%
! TGTCATATTCAACAATTTAC+TGG + chr1_2:7483808-7483827 Msa0053070:intron 25.0%
! AACTCACTTATAAGATCAAT+AGG - chr1_2:7484246-7484265 None:intergenic 25.0%
! CACTGATATAACTTGAAATT+GGG - chr1_2:7484384-7484403 None:intergenic 25.0%
! ACACTGATATAACTTGAAAT+TGG - chr1_2:7484385-7484404 None:intergenic 25.0%
! AAAAAAATCTGACAGACAAA+AGG - chr1_2:7484465-7484484 None:intergenic 25.0%
! TAGTGATTTCTTATTCAGAA+TGG + chr1_2:7484517-7484536 Msa0053070:intron 25.0%
! CCATGTATAGAACTTAAAAA+GGG - chr1_2:7484660-7484679 None:intergenic 25.0%
! TCCATGTATAGAACTTAAAA+AGG - chr1_2:7484661-7484680 None:intergenic 25.0%
!!! TTTTTAAGTTCTATACATGG+AGG + chr1_2:7484660-7484679 Msa0053070:CDS 25.0%
!!! TTTTAAGTTCTATACATGGA+GGG + chr1_2:7484661-7484680 Msa0053070:CDS 25.0%
! CCATGTATAGAAGTTAAAAA+GGG - chr1_2:7484726-7484745 None:intergenic 25.0%
! TCCATGTATAGAAGTTAAAA+AGG - chr1_2:7484727-7484746 None:intergenic 25.0%
!!! TTTTTAACTTCTATACATGG+AGG + chr1_2:7484726-7484745 Msa0053070:CDS 25.0%
!!! TTTTAACTTCTATACATGGA+GGG + chr1_2:7484727-7484746 Msa0053070:CDS 25.0%
TTTCTCAGTTCCAAACAAAA+TGG + chr1_2:7481041-7481060 Msa0053070:exon 30.0%
! TTTTGTGTGTCCATTTTGTT+TGG - chr1_2:7481054-7481073 None:intergenic 30.0%
! TTGATTGATTCTTTGAGCAT+TGG - chr1_2:7481108-7481127 None:intergenic 30.0%
CCCTTGAATTTCATACTAAT+AGG + chr1_2:7481247-7481266 Msa0053070:CDS 30.0%
! GTTTGAGATTTATCGTTTGA+TGG + chr1_2:7481386-7481405 Msa0053070:CDS 30.0%
!! AATGTGTTTGATTTTTGAGG+CGG + chr1_2:7481725-7481744 Msa0053070:CDS 30.0%
AGTCTAAATAGTTGTCATCA+AGG - chr1_2:7482029-7482048 None:intergenic 30.0%
GAAAATTAAGCTGTTAACGT+AGG + chr1_2:7482335-7482354 Msa0053070:intron 30.0%
AAAGAATGCATGACAACAAA+TGG - chr1_2:7482392-7482411 None:intergenic 30.0%
GACCGAACATAATTATATTG+AGG - chr1_2:7482480-7482499 None:intergenic 30.0%
ATTATGTTCGGTCATTATGT+TGG + chr1_2:7482487-7482506 Msa0053070:intron 30.0%
! TGTAGATTCTACAGCATTTT+AGG + chr1_2:7482522-7482541 Msa0053070:intron 30.0%
TATATTACTCAGTTTGACGT+AGG + chr1_2:7482733-7482752 Msa0053070:intron 30.0%
AGTAATGCTAAAGCATATGA+TGG - chr1_2:7482899-7482918 None:intergenic 30.0%
TCAAGTAACCTCTCTATAAA+GGG - chr1_2:7483088-7483107 None:intergenic 30.0%
GAACAAAACAGGACTAAATA+AGG - chr1_2:7483212-7483231 None:intergenic 30.0%
! ATAAGATCCGACAGTATTTT+TGG + chr1_2:7483316-7483335 Msa0053070:intron 30.0%
TTCATGCGATAATTTAGGTA+AGG + chr1_2:7483420-7483439 Msa0053070:intron 30.0%
CAGAATCAATATTTCAACTC+TGG - chr1_2:7483447-7483466 None:intergenic 30.0%
! CCTTTTCAAAGACAATATAC+TGG - chr1_2:7483612-7483631 None:intergenic 30.0%
! CCAGTATATTGTCTTTGAAA+AGG + chr1_2:7483609-7483628 Msa0053070:intron 30.0%
TGACATAATCTTCTCAACAT+TGG + chr1_2:7483665-7483684 Msa0053070:intron 30.0%
! AATTCGAGTTCTTTGGTTTA+TGG + chr1_2:7483719-7483738 Msa0053070:intron 30.0%
! TGCATCATACTTTTCTTGAA+GGG - chr1_2:7483762-7483781 None:intergenic 30.0%
! ATGCATCATACTTTTCTTGA+AGG - chr1_2:7483763-7483782 None:intergenic 30.0%
TCATTCATTAATTGTCAAGC+TGG + chr1_2:7483908-7483927 Msa0053070:CDS 30.0%
!! AATTGATAGCGAAATCTTTC+AGG - chr1_2:7483955-7483974 None:intergenic 30.0%
TGAAAGATTTCGCTATCAAT+TGG + chr1_2:7483954-7483973 Msa0053070:CDS 30.0%
TCATATTTCACAGCTACAAT+AGG - chr1_2:7484027-7484046 None:intergenic 30.0%
GTAGCTGTGAAATATGAATT+AGG + chr1_2:7484030-7484049 Msa0053070:intron 30.0%
GTGAAATATGAATTAGGAAG+TGG + chr1_2:7484036-7484055 Msa0053070:intron 30.0%
AATAAGTCTGATAATCTGCT+TGG + chr1_2:7484078-7484097 Msa0053070:intron 30.0%
CTTATGTAAATTCCTTCTGT+AGG + chr1_2:7484136-7484155 Msa0053070:CDS 30.0%
ACTTATAAGATCAATAGGAG+TGG - chr1_2:7484241-7484260 None:intergenic 30.0%
!!! CCCTTTTTAAGTTCTATACA+TGG + chr1_2:7484657-7484676 Msa0053070:CDS 30.0%
!!! CCCTTTTTAACTTCTATACA+TGG + chr1_2:7484723-7484742 Msa0053070:CDS 30.0%
AGAGATGATGAGTAAGTACA+TGG - chr1_2:7480961-7480980 None:intergenic 35.0%
! GAGAAAAACCCTAGGTTTTA+GGG - chr1_2:7480999-7481018 None:intergenic 35.0%
! AGAGAAAAACCCTAGGTTTT+AGG - chr1_2:7481000-7481019 None:intergenic 35.0%
GAGAAATTGTTGAAGGAAGT+TGG - chr1_2:7481027-7481046 None:intergenic 35.0%
TGGAACTGAGAAATTGTTGA+AGG - chr1_2:7481034-7481053 None:intergenic 35.0%
!! TTGATTCTTTGAGCATTGGT+TGG - chr1_2:7481104-7481123 None:intergenic 35.0%
CGATAAATCTCAAACACCAA+CGG - chr1_2:7481381-7481400 None:intergenic 35.0%
!! ATTTATCGTTTGATGGGTTG+TGG + chr1_2:7481393-7481412 Msa0053070:CDS 35.0%
!! TTTATCGTTTGATGGGTTGT+GGG + chr1_2:7481394-7481413 Msa0053070:CDS 35.0%
AGAAGTGAAGAGTGAAATTG+AGG + chr1_2:7481419-7481438 Msa0053070:CDS 35.0%
GAAGTGAAGAGTGAAATTGA+GGG + chr1_2:7481420-7481439 Msa0053070:CDS 35.0%
TTGTATGAAGAGTGAAGTTG+AGG + chr1_2:7481479-7481498 Msa0053070:CDS 35.0%
AAGAGTGAAGTTGAGGTTAA+TGG + chr1_2:7481486-7481505 Msa0053070:CDS 35.0%
!!! GGGTTTTGTTGATTTGATAC+CGG + chr1_2:7481539-7481558 Msa0053070:CDS 35.0%
!! TTGTTGATTTGATACCGGTT+TGG + chr1_2:7481544-7481563 Msa0053070:CDS 35.0%
!! TTGGTGGTGATTGTTTGAAA+GGG + chr1_2:7481601-7481620 Msa0053070:CDS 35.0%
! TTTTTCCCTTTTGTGAGTGA+TGG + chr1_2:7481624-7481643 Msa0053070:CDS 35.0%
! TTTTCCCTTTTGTGAGTGAT+GGG + chr1_2:7481625-7481644 Msa0053070:CDS 35.0%
!!! ATGTGTTTGATTTTTGAGGC+GGG + chr1_2:7481726-7481745 Msa0053070:CDS 35.0%
AGCTAATGTAATCTCAACTG+CGG + chr1_2:7481922-7481941 Msa0053070:intron 35.0%
CTTGTACACTTAGTAATTGC+TGG - chr1_2:7482057-7482076 None:intergenic 35.0%
GCAATTACTAAGTGTACAAG+CGG + chr1_2:7482057-7482076 Msa0053070:intron 35.0%
CAATTACTAAGTGTACAAGC+GGG + chr1_2:7482058-7482077 Msa0053070:intron 35.0%
CAGCTTATGAAAATAGACTG+TGG + chr1_2:7482215-7482234 Msa0053070:intron 35.0%
! GCTTATCAGATATGCTTTTG+AGG + chr1_2:7482827-7482846 Msa0053070:CDS 35.0%
!! TATGCTTTTGAGGATGATGT+TGG + chr1_2:7482837-7482856 Msa0053070:CDS 35.0%
CACATAGTTTCATGGAGAAA+AGG - chr1_2:7482971-7482990 None:intergenic 35.0%
CAGTGGCATCATAATATGAT+TGG - chr1_2:7483064-7483083 None:intergenic 35.0%
CAAGTAACCTCTCTATAAAG+GGG - chr1_2:7483087-7483106 None:intergenic 35.0%
CTCAAGTAACCTCTCTATAA+AGG - chr1_2:7483089-7483108 None:intergenic 35.0%
TAAGGAAAAGTGGTAAGTGT+GGG - chr1_2:7483194-7483213 None:intergenic 35.0%
ATAAGGAAAAGTGGTAAGTG+TGG - chr1_2:7483195-7483214 None:intergenic 35.0%
CAGGACTAAATAAGGAAAAG+TGG - chr1_2:7483204-7483223 None:intergenic 35.0%
!!! ATCCGACAGTATTTTTGGTT+CGG + chr1_2:7483321-7483340 Msa0053070:intron 35.0%
GAAAAGATTATAGGTCACTC+AGG + chr1_2:7483364-7483383 Msa0053070:intron 35.0%
GGTGAACTAAACAATTTCTC+TGG - chr1_2:7483570-7483589 None:intergenic 35.0%
GGGAACTATACTTGAAGAAT+CGG - chr1_2:7483591-7483610 None:intergenic 35.0%
CAAAGAACTCGAATTACCAA+CGG - chr1_2:7483714-7483733 None:intergenic 35.0%
!! TTTACTGGTCGTTTTGCTAT+AGG + chr1_2:7483823-7483842 Msa0053070:intron 35.0%
!! TTACTGGTCGTTTTGCTATA+GGG + chr1_2:7483824-7483843 Msa0053070:intron 35.0%
CATCATCACAGAATAGTACA+GGG - chr1_2:7483879-7483898 None:intergenic 35.0%
TCATCATCACAGAATAGTAC+AGG - chr1_2:7483880-7483899 None:intergenic 35.0%
! GTACTATTCTGTGATGATGA+TGG + chr1_2:7483880-7483899 Msa0053070:CDS 35.0%
ATGAATTAGGAAGTGGTTTC+TGG + chr1_2:7484043-7484062 Msa0053070:intron 35.0%
TGATAATCTGCTTGGTTACA+GGG + chr1_2:7484086-7484105 Msa0053070:intron 35.0%
TTCCCATTCAATTGATCAAC+TGG + chr1_2:7484166-7484185 Msa0053070:CDS 35.0%
TCCCATTCAATTGATCAACT+GGG + chr1_2:7484167-7484186 Msa0053070:CDS 35.0%
ACCCAGTTGATCAATTGAAT+GGG - chr1_2:7484171-7484190 None:intergenic 35.0%
AACCCAGTTGATCAATTGAA+TGG - chr1_2:7484172-7484191 None:intergenic 35.0%
AAAGAAAATGGAGGGGTAAT+TGG - chr1_2:7484272-7484291 None:intergenic 35.0%
ACTTCTCTTTGACTGTTAAG+AGG + chr1_2:7484305-7484324 Msa0053070:intron 35.0%
GCAAGGTGTATAATTGAATG+TGG + chr1_2:7484353-7484372 Msa0053070:intron 35.0%
TCAAGTTATATCAGTGTCGT+TGG + chr1_2:7484388-7484407 Msa0053070:intron 35.0%
ATCATCACCAGACAAACTTA+CGG - chr1_2:7484808-7484827 None:intergenic 35.0%
AAAACGCAAAGAAGGAATTG+AGG + chr1_2:7484860-7484879 Msa0053070:CDS 35.0%
!! TTTTAGGGAGTGGTTGTAAG+TGG - chr1_2:7480984-7481003 None:intergenic 40.0%
!! ATTGGTTGGTAGTAAAGTGG+GGG - chr1_2:7481090-7481109 None:intergenic 40.0%
!! CATTGGTTGGTAGTAAAGTG+GGG - chr1_2:7481091-7481110 None:intergenic 40.0%
!! GCATTGGTTGGTAGTAAAGT+GGG - chr1_2:7481092-7481111 None:intergenic 40.0%
!! AGCATTGGTTGGTAGTAAAG+TGG - chr1_2:7481093-7481112 None:intergenic 40.0%
TGAGGTGAAATCGGTGAAAT+TGG - chr1_2:7481163-7481182 None:intergenic 40.0%
GGAGAAGATTGAGGTGAAAT+CGG - chr1_2:7481172-7481191 None:intergenic 40.0%
TAGAACCACAGAAGTGGAAT+TGG - chr1_2:7481222-7481241 None:intergenic 40.0%
!! AGAAGCTTCTAGAACTTCAC+TGG + chr1_2:7481275-7481294 Msa0053070:CDS 40.0%
!! TTCTAGAACTTCACTGGTTG+CGG + chr1_2:7481281-7481300 Msa0053070:CDS 40.0%
!! TTATCGTTTGATGGGTTGTG+GGG + chr1_2:7481395-7481414 Msa0053070:CDS 40.0%
GAAGAGTGAAATTGAGGGTT+TGG + chr1_2:7481425-7481444 Msa0053070:CDS 40.0%
!! AAATTGAGGGTTTGGTGGAA+GGG + chr1_2:7481433-7481452 Msa0053070:CDS 40.0%
AGTGAAGTTGAGGTTAATGG+TGG + chr1_2:7481489-7481508 Msa0053070:CDS 40.0%
!! TGATTTGATACCGGTTTGGA+TGG + chr1_2:7481548-7481567 Msa0053070:CDS 40.0%
TCACAATCAACCATCCAAAC+CGG - chr1_2:7481561-7481580 None:intergenic 40.0%
GTTTGGATGGTTGATTGTGA+CGG + chr1_2:7481561-7481580 Msa0053070:CDS 40.0%
!! GTTGGTGGTGATTGTTTGAA+AGG + chr1_2:7481600-7481619 Msa0053070:CDS 40.0%
! TTTCCCTTTTGTGAGTGATG+GGG + chr1_2:7481626-7481645 Msa0053070:CDS 40.0%
!! ATTGAAATGGGTTGTGAGGT+TGG + chr1_2:7481660-7481679 Msa0053070:CDS 40.0%
!!! TGTGTTTGATTTTTGAGGCG+GGG + chr1_2:7481727-7481746 Msa0053070:CDS 40.0%
! TGGGGTATTTAGGATCTGTT+TGG + chr1_2:7482081-7482100 Msa0053070:intron 40.0%
TAAGCACTTGTCAGACTGTT+TGG + chr1_2:7482121-7482140 Msa0053070:intron 40.0%
AAGCACTTGTCAGACTGTTT+GGG + chr1_2:7482122-7482141 Msa0053070:intron 40.0%
TCGGTCATTATGTTGGAGTT+TGG + chr1_2:7482494-7482513 Msa0053070:intron 40.0%
!! CATTTTAGGAAGCCAGATCT+TGG + chr1_2:7482536-7482555 Msa0053070:intron 40.0%
AGTTGTCTCCTGTCTTTGTA+TGG + chr1_2:7482644-7482663 Msa0053070:intron 40.0%
GTTGTCTCCTGTCTTTGTAT+GGG + chr1_2:7482645-7482664 Msa0053070:intron 40.0%
AGATTGACCCATACAAAGAC+AGG - chr1_2:7482655-7482674 None:intergenic 40.0%
GATATGTCCTTGTGCTTTCT+GGG + chr1_2:7482755-7482774 Msa0053070:intron 40.0%
ATATGTCCTTGTGCTTTCTG+GGG + chr1_2:7482756-7482775 Msa0053070:intron 40.0%
TGACTTCCTGACTGCTTTAT+TGG + chr1_2:7482803-7482822 Msa0053070:CDS 40.0%
TAAGCACCAATAAAGCAGTC+AGG - chr1_2:7482812-7482831 None:intergenic 40.0%
TATGATGGTACTTACCAGCA+AGG - chr1_2:7482884-7482903 None:intergenic 40.0%
AGTTTCATGGAGAAAAGGAG+AGG - chr1_2:7482966-7482985 None:intergenic 40.0%
TCAGTTAAACCTATGCCAAG+TGG - chr1_2:7483033-7483052 None:intergenic 40.0%
GTGTGGGATCCTATCTAAAA+GGG - chr1_2:7483178-7483197 None:intergenic 40.0%
AGTGTGGGATCCTATCTAAA+AGG - chr1_2:7483179-7483198 None:intergenic 40.0%
!! CATGAGTTTAGTTCTGTGCT+TGG - chr1_2:7483250-7483269 None:intergenic 40.0%
TGCCGAACCAAAAATACTGT+CGG - chr1_2:7483326-7483345 None:intergenic 40.0%
! CTTTGAAAAGGGCTACTACT+TGG + chr1_2:7483621-7483640 Msa0053070:intron 40.0%
! TCAACATTGGCTACAATGCT+GGG + chr1_2:7483678-7483697 Msa0053070:intron 40.0%
!! CGTTGGTAATTCGAGTTCTT+TGG + chr1_2:7483712-7483731 Msa0053070:intron 40.0%
CTGATAATCTGCTTGGTTAC+AGG + chr1_2:7484085-7484104 Msa0053070:intron 40.0%
GATCAATTGAATGGGAATGC+AGG - chr1_2:7484163-7484182 None:intergenic 40.0%
TCAATAGGAGTGGAAACACT+TGG - chr1_2:7484231-7484250 None:intergenic 40.0%
!! ATATCAGTGTCGTTGGTGAT+TGG + chr1_2:7484395-7484414 Msa0053070:intron 40.0%
TGGTGATTGGATTCTGACTA+TGG + chr1_2:7484408-7484427 Msa0053070:intron 40.0%
GGAAAGAGACTACGCATAAT+TGG - chr1_2:7484444-7484463 None:intergenic 40.0%
!! GAACACGGATTGGCAATATT+TGG + chr1_2:7484555-7484574 Msa0053070:CDS 40.0%
! GGATTGGCAATATTTGGTTG+TGG + chr1_2:7484561-7484580 Msa0053070:CDS 40.0%
GCAATATTTGGTTGTGGAAC+TGG + chr1_2:7484567-7484586 Msa0053070:CDS 40.0%
AAAAAGGGATGTTTGACCAC+CGG - chr1_2:7484645-7484664 None:intergenic 40.0%
! TCTATACATGGAGGGTTTTC+AGG + chr1_2:7484669-7484688 Msa0053070:CDS 40.0%
AAAAAGGGATGTTCAACCAC+CGG - chr1_2:7484711-7484730 None:intergenic 40.0%
TGTAGAGATGCATGATACTG+TGG + chr1_2:7484779-7484798 Msa0053070:CDS 40.0%
GCAACTAGAAAACGCAAAGA+AGG + chr1_2:7484852-7484871 Msa0053070:CDS 40.0%
! TCACTGTTGCTTGAATGTAC+AGG - chr1_2:7484952-7484971 None:intergenic 40.0%
ACAACCACTCCCTAAAACCT+AGG + chr1_2:7480987-7481006 Msa0053070:five_prime_UTR 45.0%
CAACCACTCCCTAAAACCTA+GGG + chr1_2:7480988-7481007 Msa0053070:five_prime_UTR 45.0%
!!! AAACCCTAGGTTTTAGGGAG+TGG - chr1_2:7480994-7481013 None:intergenic 45.0%
TGGTGAGAGAGAAAAACCCT+AGG - chr1_2:7481007-7481026 None:intergenic 45.0%
!!! AAAGTGGGGGGTGTTTTGAA+GGG - chr1_2:7481077-7481096 None:intergenic 45.0%
!!! TAAAGTGGGGGGTGTTTTGA+AGG - chr1_2:7481078-7481097 None:intergenic 45.0%
!! TTGGTTGGTAGTAAAGTGGG+GGG - chr1_2:7481089-7481108 None:intergenic 45.0%
TGCGGTATTCGGTTAGGAAA+CGG - chr1_2:7481131-7481150 None:intergenic 45.0%
TTCCTAACCGAATACCGCAA+CGG + chr1_2:7481132-7481151 Msa0053070:CDS 45.0%
! TGAAATTGGTAGCACCGTTG+CGG - chr1_2:7481149-7481168 None:intergenic 45.0%
ACCACAGAAGTGGAATTGGT+GGG - chr1_2:7481218-7481237 None:intergenic 45.0%
AACCACAGAAGTGGAATTGG+TGG - chr1_2:7481219-7481238 None:intergenic 45.0%
GCTGAATAGAACCACAGAAG+TGG - chr1_2:7481228-7481247 None:intergenic 45.0%
! AACTTCACTGGTTGCGGTTA+AGG + chr1_2:7481287-7481306 Msa0053070:CDS 45.0%
! ACTTCACTGGTTGCGGTTAA+GGG + chr1_2:7481288-7481307 Msa0053070:CDS 45.0%
GAGTGAAATTGAGGGTTTGG+TGG + chr1_2:7481428-7481447 Msa0053070:CDS 45.0%
!! GAAATTGAGGGTTTGGTGGA+AGG + chr1_2:7481432-7481451 Msa0053070:CDS 45.0%
!! AATTGAGGGTTTGGTGGAAG+GGG + chr1_2:7481434-7481453 Msa0053070:CDS 45.0%
! AATGGTGGTGATGCTAGAGT+TGG + chr1_2:7481504-7481523 Msa0053070:CDS 45.0%
! ATGGTGGTGATGCTAGAGTT+GGG + chr1_2:7481505-7481524 Msa0053070:CDS 45.0%
! TGATGCTAGAGTTGGGGTTT+TGG + chr1_2:7481512-7481531 Msa0053070:CDS 45.0%
!!! TAGAGTTGGGGTTTTGGAAG+AGG + chr1_2:7481518-7481537 Msa0053070:CDS 45.0%
!!! AGAGTTGGGGTTTTGGAAGA+GGG + chr1_2:7481519-7481538 Msa0053070:CDS 45.0%
GAACCCCATCACTCACAAAA+GGG - chr1_2:7481632-7481651 None:intergenic 45.0%
!! CTTTTGTGAGTGATGGGGTT+CGG + chr1_2:7481631-7481650 Msa0053070:CDS 45.0%
GTTCGGAAGGGGATTGAAAT+GGG + chr1_2:7481648-7481667 Msa0053070:CDS 45.0%
! GGGTTGTGAGGTTGGTTATT+TGG + chr1_2:7481668-7481687 Msa0053070:CDS 45.0%
! TGTGAGGTTGGTTATTTGGC+TGG + chr1_2:7481672-7481691 Msa0053070:CDS 45.0%
! GTGAGGTTGGTTATTTGGCT+GGG + chr1_2:7481673-7481692 Msa0053070:CDS 45.0%
! TGAGGTTGGTTATTTGGCTG+GGG + chr1_2:7481674-7481693 Msa0053070:CDS 45.0%
! TGCAGCAGTTCAGGTTATGA+CGG + chr1_2:7481785-7481804 Msa0053070:CDS 45.0%
! TTCAGGTTATGACGGGGTTT+CGG + chr1_2:7481793-7481812 Msa0053070:CDS 45.0%
! ATGGATTGCGGCTGCAATTT+AGG - chr1_2:7481997-7482016 None:intergenic 45.0%
TTACTAAGTGTACAAGCGGG+TGG + chr1_2:7482061-7482080 Msa0053070:intron 45.0%
TACTAAGTGTACAAGCGGGT+GGG + chr1_2:7482062-7482081 Msa0053070:intron 45.0%
GGATATGTCCTTGTGCTTTC+TGG + chr1_2:7482754-7482773 Msa0053070:intron 45.0%
! AAATCACCCCAGAAAGCACA+AGG - chr1_2:7482765-7482784 None:intergenic 45.0%
GTGGAACAGGAGAACAAAAC+AGG - chr1_2:7483156-7483175 None:intergenic 45.0%
CCTATCTAAAAGGGTGGAAC+AGG - chr1_2:7483169-7483188 None:intergenic 45.0%
! CCTGTTCCACCCTTTTAGAT+AGG + chr1_2:7483166-7483185 Msa0053070:intron 45.0%
TGGGATCCTATCTAAAAGGG+TGG - chr1_2:7483175-7483194 None:intergenic 45.0%
! CTCAACATTGGCTACAATGC+TGG + chr1_2:7483677-7483696 Msa0053070:intron 45.0%
CTCGAATTACCAACGGAAGA+AGG - chr1_2:7483707-7483726 None:intergenic 45.0%
AGCGAAATCTTTCAGGCTGT+CGG - chr1_2:7483948-7483967 None:intergenic 45.0%
AGTCAGCTATACAGTCTGCT+AGG + chr1_2:7483990-7484009 Msa0053070:CDS 45.0%
TCTGCTTGGTTACAGGGAAA+AGG + chr1_2:7484092-7484111 Msa0053070:intron 45.0%
CTGCTTGGTTACAGGGAAAA+GGG + chr1_2:7484093-7484112 Msa0053070:intron 45.0%
TACAGGGAAAAGGGTGATCA+TGG + chr1_2:7484102-7484121 Msa0053070:intron 45.0%
ACAGGGAAAAGGGTGATCAT+GGG + chr1_2:7484103-7484122 Msa0053070:intron 45.0%
AACTGGGTTACTCGTCAAAG+CGG + chr1_2:7484183-7484202 Msa0053070:CDS 45.0%
AGCGGCATAGACAGAAAGAT+CGG + chr1_2:7484201-7484220 Msa0053070:CDS 45.0%
GAAAATGGAGGGGTAATTGG+TGG - chr1_2:7484269-7484288 None:intergenic 45.0%
AAGAACTGTGCCTATGCTTC+CGG + chr1_2:7484623-7484642 Msa0053070:CDS 45.0%
TTCTATACATGGAGGGTTCG+TGG + chr1_2:7484734-7484753 Msa0053070:CDS 45.0%
!!! GCGTTTTCTAGTTGCATCAG+TGG - chr1_2:7484847-7484866 None:intergenic 45.0%
AATTGCGCGGGAGAAGATTG+AGG - chr1_2:7481181-7481200 None:intergenic 50.0%
TGAAGTGGTGTGAATTGCGC+GGG - chr1_2:7481193-7481212 None:intergenic 50.0%
CTGAAGTGGTGTGAATTGCG+CGG - chr1_2:7481194-7481213 None:intergenic 50.0%
! TGGAATTGGTGGGTCTGAAG+TGG - chr1_2:7481208-7481227 None:intergenic 50.0%
ACCCACCAATTCCACTTCTG+TGG + chr1_2:7481214-7481233 Msa0053070:CDS 50.0%
CTGCTTGTTTCGTGTTGCGA+TGG + chr1_2:7481321-7481340 Msa0053070:CDS 50.0%
ATGGATGTGTCGCGATGAAG+AGG + chr1_2:7481340-7481359 Msa0053070:CDS 50.0%
TGTGTCGCGATGAAGAGGAT+CGG + chr1_2:7481345-7481364 Msa0053070:CDS 50.0%
! TGGTGGTGATGCTAGAGTTG+GGG + chr1_2:7481506-7481525 Msa0053070:CDS 50.0%
TGGATGGTTGATTGTGACGG+TGG + chr1_2:7481564-7481583 Msa0053070:CDS 50.0%
ATGGTTGATTGTGACGGTGG+TGG + chr1_2:7481567-7481586 Msa0053070:CDS 50.0%
CGAACCCCATCACTCACAAA+AGG - chr1_2:7481633-7481652 None:intergenic 50.0%
GGTTCGGAAGGGGATTGAAA+TGG + chr1_2:7481647-7481666 Msa0053070:CDS 50.0%
!! GGGGATTGAAATGGGTTGTG+AGG + chr1_2:7481656-7481675 Msa0053070:CDS 50.0%
! GCAGCAGTTCAGGTTATGAC+GGG + chr1_2:7481786-7481805 Msa0053070:CDS 50.0%
! CAGCAGTTCAGGTTATGACG+GGG + chr1_2:7481787-7481806 Msa0053070:CDS 50.0%
ACTAAGTGTACAAGCGGGTG+GGG + chr1_2:7482063-7482082 Msa0053070:intron 50.0%
! TACAAGCGGGTGGGGTATTT+AGG + chr1_2:7482071-7482090 Msa0053070:intron 50.0%
AGGAGACAACTCTACGTGGA+TGG - chr1_2:7482635-7482654 None:intergenic 50.0%
AGACAGGAGACAACTCTACG+TGG - chr1_2:7482639-7482658 None:intergenic 50.0%
AAGGAGATCACTGGCAAAGC+TGG - chr1_2:7482865-7482884 None:intergenic 50.0%
TTTGCCAGTGATCTCCTTGC+TGG + chr1_2:7482867-7482886 Msa0053070:CDS 50.0%
CTTACCAGCAAGGAGATCAC+TGG - chr1_2:7482874-7482893 None:intergenic 50.0%
AGCCATCTTACTCGTCCACT+TGG + chr1_2:7483015-7483034 Msa0053070:intron 50.0%
TGCCAAGTGGACGAGTAAGA+TGG - chr1_2:7483020-7483039 None:intergenic 50.0%
CTTACTCGTCCACTTGGCAT+AGG + chr1_2:7483021-7483040 Msa0053070:intron 50.0%
ACCTCTCTATAAAGGGGCAG+TGG - chr1_2:7483081-7483100 None:intergenic 50.0%
TAGGTCACTCAGGAGAGATG+AGG + chr1_2:7483374-7483393 Msa0053070:intron 50.0%
AGGTCACTCAGGAGAGATGA+GGG + chr1_2:7483375-7483394 Msa0053070:intron 50.0%
! AGAATGGCTTCTAGCTGCTG+AGG + chr1_2:7484533-7484552 Msa0053070:intron 50.0%
! CTTCTAGCTGCTGAGGAACA+CGG + chr1_2:7484540-7484559 Msa0053070:CDS 50.0%
! AACTGGCAAGCATCGTGCAA+AGG + chr1_2:7484584-7484603 Msa0053070:CDS 50.0%
! TGTTTGACCACCGGAAGCAT+AGG - chr1_2:7484636-7484655 None:intergenic 50.0%
AGGAACTGTGCCTATGCTTC+CGG + chr1_2:7484689-7484708 Msa0053070:CDS 50.0%
! TGTTCAACCACCGGAAGCAT+AGG - chr1_2:7484702-7484721 None:intergenic 50.0%
CACCGTTGCGGTATTCGGTT+AGG - chr1_2:7481137-7481156 None:intergenic 55.0%
GGTAGCACCGTTGCGGTATT+CGG - chr1_2:7481142-7481161 None:intergenic 55.0%
!!! GATCGGTGTTTTAGCGCCGT+TGG + chr1_2:7481362-7481381 Msa0053070:CDS 55.0%
! TGTGACGGTGGTGGTGAATC+TGG + chr1_2:7481576-7481595 Msa0053070:CDS 55.0%
! GTGACGGTGGTGGTGAATCT+GGG + chr1_2:7481577-7481596 Msa0053070:CDS 55.0%
! TGACGGTGGTGGTGAATCTG+GGG + chr1_2:7481578-7481597 Msa0053070:CDS 55.0%
! TGTGAGTGATGGGGTTCGGA+AGG + chr1_2:7481635-7481654 Msa0053070:CDS 55.0%
! GTGAGTGATGGGGTTCGGAA+GGG + chr1_2:7481636-7481655 Msa0053070:CDS 55.0%
! TGAGTGATGGGGTTCGGAAG+GGG + chr1_2:7481637-7481656 Msa0053070:CDS 55.0%
GTTGCATGCTGCAGCAGTTC+AGG + chr1_2:7481776-7481795 Msa0053070:CDS 55.0%
GCCACTGCCCCTTTATAGAG+AGG + chr1_2:7483077-7483096 Msa0053070:CDS 55.0%
GGGAATGCAGGACCTACAGA+AGG - chr1_2:7484151-7484170 None:intergenic 55.0%
AGCTGCTGAGGAACACGGAT+TGG + chr1_2:7484545-7484564 Msa0053070:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr1_2:7484626-7484645 Msa0053070:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr1_2:7484626-7484645 Msa0053070:CDS 55.0%
GTGGACGCCGTAAGTTTGTC+TGG + chr1_2:7484798-7484817 Msa0053070:CDS 55.0%
! GGTGGTGGTGAATCTGGGGT+TGG + chr1_2:7481582-7481601 Msa0053070:CDS 60.0%
! GGTGGTGAATCTGGGGTTGG+TGG + chr1_2:7481585-7481604 Msa0053070:CDS 60.0%
! TTTGAGGCGGGGATCGCGAG+AGG + chr1_2:7481738-7481757 Msa0053070:CDS 65.0%
TTGAGGCGGGGATCGCGAGA+GGG + chr1_2:7481739-7481758 Msa0053070:CDS 65.0%
GCTGGGCAGCCTTCTTCCGT+TGG + chr1_2:7483695-7483714 Msa0053070:intron 65.0%
TGAGGCGGGGATCGCGAGAG+GGG + chr1_2:7481740-7481759 Msa0053070:CDS 70.0%
GGGGATCGCGAGAGGGGAGA+AGG + chr1_2:7481746-7481765 Msa0053070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7480951 7484971 7480951 ID=Msa0053070;Name=Msa0053070
chr1_2 mRNA 7480951 7484971 7480951 ID=Msa0053070-mRNA-1;Parent=Msa0053070;Name=Msa0053070-mRNA-1;_AED=0.17;_eAED=0.19;_QI=109|0.4|0.5|1|1|1|6|0|559
chr1_2 exon 7480951 7481831 7480951 ID=Msa0053070-mRNA-1:exon:2519;Parent=Msa0053070-mRNA-1
chr1_2 exon 7482793 7482888 7482793 ID=Msa0053070-mRNA-1:exon:2520;Parent=Msa0053070-mRNA-1
chr1_2 exon 7483043 7483098 7483043 ID=Msa0053070-mRNA-1:exon:2521;Parent=Msa0053070-mRNA-1
chr1_2 exon 7483845 7484011 7483845 ID=Msa0053070-mRNA-1:exon:2522;Parent=Msa0053070-mRNA-1
chr1_2 exon 7484107 7484258 7484107 ID=Msa0053070-mRNA-1:exon:2523;Parent=Msa0053070-mRNA-1
chr1_2 exon 7484535 7484971 7484535 ID=Msa0053070-mRNA-1:exon:2524;Parent=Msa0053070-mRNA-1
chr1_2 five_prime_UTR 7480951 7481059 7480951 ID=Msa0053070-mRNA-1:five_prime_utr;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7481060 7481831 7481060 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7482793 7482888 7482793 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7483043 7483098 7483043 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7483845 7484011 7483845 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7484107 7484258 7484107 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
chr1_2 CDS 7484535 7484971 7484535 ID=Msa0053070-mRNA-1:cds;Parent=Msa0053070-mRNA-1
Gene Sequence

>Msa0053070

ATGGACACACAAAACCCTTCAAAACACCCCCCACTTTACTACCAACCAATGCTCAAAGAATCAATCAACCGTTTCCTAACCGAATACCGCAACGGTGCTACCAATTTCACCGATTTCACCTCAATCTTCTCCCGCGCAATTCACACCACTTCAGACCCACCAATTCCACTTCTGTGGTTCTATTCAGCCCTTGAATTTCATACTAATAGGTTAAGAGAAGCTTCTAGAACTTCACTGGTTGCGGTTAAGGGTTTGTTTCAGCTGCTTGTTTCGTGTTGCGATGGATGTGTCGCGATGAAGAGGATCGGTGTTTTAGCGCCGTTGGTGTTTGAGATTTATCGTTTGATGGGTTGTGGGGAAGAAGTGAAGAGTGAAATTGAGGGTTTGGTGGAAGGGGTTGTGAGTTATTGTAGCATTTATTGTATGAAGAGTGAAGTTGAGGTTAATGGTGGTGATGCTAGAGTTGGGGTTTTGGAAGAGGGTTTTGTTGATTTGATACCGGTTTGGATGGTTGATTGTGACGGTGGTGGTGAATCTGGGGTTGGTGGTGATTGTTTGAAAGGGTTTTTCCCTTTTGTGAGTGATGGGGTTCGGAAGGGGATTGAAATGGGTTGTGAGGTTGGTTATTTGGCTGGGGTTGTTATGTTTGAAGCTCTTTTGTTGAAAATGTGTTTGATTTTTGAGGCGGGGATCGCGAGAGGGGAGAAGGAGAAGAAGTTGCATGCTGCAGCAGTTCAGGTTATGACGGGGTTTCGGAATTTTTACTTTTTGGTTTTCATTTATGACTTCCTGACTGCTTTATTGGTGCTTATCAGATATGCTTTTGAGGATGATGTTGGAGCCAGCTTTGCCAGTGATCTCCTTGCTGGTTTAACTGAAGCTGAAGCCAATCATATTATGATGCCACTGCCCCTTTATAGAGAGGGTTCTGACAACGAAGTTCTTTTAAAAGAAGCCCTGTACTATTCTGTGATGATGATGGATTATTCATTCATTAATTGTCAAGCTGGAGTTTCTTTGTATGCCGACAGCCTGAAAGATTTCGCTATCAATTGGTTGTTTGTTGCTGAGTCAGCTATACAGTCTGCTAGGGAAAAGGGTGATCATGGGAAAGCTACTTCTTATGTAAATTCCTTCTGTAGGTCCTGCATTCCCATTCAATTGATCAACTGGGTTACTCGTCAAAGCGGCATAGACAGAAAGATCGGCAGACCAAGTGTTTCCACTCCTATTGATCTTATAAAATGGCTTCTAGCTGCTGAGGAACACGGATTGGCAATATTTGGTTGTGGAACTGGCAAGCATCGTGCAAAGGCTTTCGTTTTCACTTCAAGAACTGTGCCTATGCTTCCGGTGGTCAAACATCCCTTTTTAAGTTCTATACATGGAGGGTTTTCAGGAACTGTGCCTATGCTTCCGGTGGTTGAACATCCCTTTTTAACTTCTATACATGGAGGGTTCGTGGCAGATAGAGTTCGTGCTAGTGATGTAGAGATGCATGATACTGTGGACGCCGTAAGTTTGTCTGGTGATGATAGAATGAGCACATTCACCACTGATGCAACTAGAAAACGCAAAGAAGGAATTGAGGATGATACAAAAGTACAGCTAAAGTATATGAGATGTCAGTTGCATGAGAATGCAGTGAGAGAAAACTCCTGTACATTCAAGCAACAGTGA

Protein sequence

>Msa0053070

MDTQNPSKHPPLYYQPMLKESINRFLTEYRNGATNFTDFTSIFSRAIHTTSDPPIPLLWFYSALEFHTNRLREASRTSLVAVKGLFQLLVSCCDGCVAMKRIGVLAPLVFEIYRLMGCGEEVKSEIEGLVEGVVSYCSIYCMKSEVEVNGGDARVGVLEEGFVDLIPVWMVDCDGGGESGVGGDCLKGFFPFVSDGVRKGIEMGCEVGYLAGVVMFEALLLKMCLIFEAGIARGEKEKKLHAAAVQVMTGFRNFYFLVFIYDFLTALLVLIRYAFEDDVGASFASDLLAGLTEAEANHIMMPLPLYREGSDNEVLLKEALYYSVMMMDYSFINCQAGVSLYADSLKDFAINWLFVAESAIQSAREKGDHGKATSYVNSFCRSCIPIQLINWVTRQSGIDRKIGRPSVSTPIDLIKWLLAAEEHGLAIFGCGTGKHRAKAFVFTSRTVPMLPVVKHPFLSSIHGGFSGTVPMLPVVEHPFLTSIHGGFVADRVRASDVEMHDTVDAVSLSGDDRMSTFTTDATRKRKEGIEDDTKVQLKYMRCQLHENAVRENSCTFKQQ*