AlfalfaGEDB | Msa1037540

M. sativa cultivar zhongmu-4 / Msa1037540

KEGG: K22155|K22156
GO: GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252
PFAM: PF00855.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037540	XP_013450600.1	90.353	964	41	4	1	912	1	964	0.0	1779

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037540	sp\|Q9M364\|ATX3_ARATH	51.844	949	355	12	60	912	76	1018	0.0	951

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037540	A0A072U651	90.353	964	41	4	1	912	1	964	0.0	1779

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TFs/TRs:

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Gene ID	Type	Classification
Msa1037540	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1037540	0.829163	6.002933e-55	-8.615850e-47
Msa0016040	Msa1037540	0.856476	3.135245e-62	-8.615850e-47
Msa0017670	Msa1037540	0.806320	8.708691e-50	-8.615850e-47
Msa0019930	Msa1037540	0.800979	1.117621e-48	-8.615850e-47
Msa0020540	Msa1037540	0.822830	1.920565e-53	-8.615850e-47
Msa0025580	Msa1037540	0.825074	5.714405e-54	-8.615850e-47
Msa0027280	Msa1037540	0.838591	2.626283e-57	-8.615850e-47
Msa0030370	Msa1037540	0.808149	3.569972e-50	-8.615850e-47
Msa0035140	Msa1037540	0.853875	1.789820e-61	-8.615850e-47
Msa0035340	Msa1037540	0.811667	6.241516e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037540	MtrunA17_Chr7g0275611	90.353	964	41	4	1	912	1	964	0.0	1779
Msa1037540	MtrunA17_Chr8g0347071	66.787	834	205	7	150	912	117	949	0.0	1143
Msa1037540	MtrunA17_Chr3g0126701	50.509	982	374	16	39	912	86	1063	0.0	925
Msa1037540	MtrunA17_Chr1g0147121	49.488	976	393	13	29	912	67	1034	0.0	900
Msa1037540	MtrunA17_Chr1g0149611	45.455	143	69	4	776	912	369	508	1.24e-30	127
Msa1037540	MtrunA17_Chr7g0221611	43.125	160	83	4	756	912	891	1045	1.35e-30	130
Msa1037540	MtrunA17_Chr1g0149581	47.183	142	68	4	776	912	1527	1666	2.87e-30	129
Msa1037540	MtrunA17_Chr2g0297191	41.958	143	78	3	771	912	1033	1171	4.61e-29	125
Msa1037540	MtrunA17_Chr1g0201621	38.816	152	87	4	762	911	76	223	2.22e-20	95.5
Msa1037540	MtrunA17_Chr1g0201311	38.158	152	88	4	762	911	76	223	8.40e-20	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037540	AT3G61740.2	54.048	914	352	13	60	912	76	982	0.0	965
Msa1037540	AT3G61740.1	51.844	949	355	12	60	912	76	1018	0.0	951
Msa1037540	AT5G53430.1	48.542	960	378	14	57	912	96	1043	0.0	884
Msa1037540	AT4G27910.1	48.778	941	385	13	57	912	99	1027	0.0	864
Msa1037540	AT1G05830.2	38.542	192	105	5	729	912	873	1059	1.26e-31	134
Msa1037540	AT1G05830.2	28.859	149	95	4	484	622	586	733	3.32e-15	80.9
Msa1037540	AT1G05830.4	38.542	192	105	5	729	912	873	1059	1.26e-31	134
Msa1037540	AT1G05830.4	28.859	149	95	4	484	622	586	733	3.32e-15	80.9
Msa1037540	AT1G05830.1	38.542	192	105	5	729	912	873	1059	1.26e-31	134
Msa1037540	AT1G05830.1	28.859	149	95	4	484	622	586	733	3.32e-15	80.9

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Find 229 sgRNAs with CRISPR-Local

Find 619 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGGCATTGGCTGAA+TGG	0.444691	7_1:-74208152	Msa1037540:CDS
AAAATAAGTACCTTATTGGG+AGG	0.624661	7_1:+74205581	None:intergenic
AAAATCAGCTATTCAAGGGT+GGG	0.563568	7_1:-74204945	Msa1037540:CDS
AAAATTCAATATATGGAGTT+TGG	0.284282	7_1:+74202162	None:intergenic
AAACATAACACAAATTGCAT+CGG	0.525202	7_1:+74210402	None:intergenic
AAACATAGTGTGAAAGTAGA+AGG	0.474293	7_1:-74208096	Msa1037540:CDS
AAACCCAGGAAGTAAAATCT+TGG	0.450551	7_1:+74207307	None:intergenic
AAAGCAGGCATTGGCTGAAT+GGG	0.423928	7_1:-74208151	Msa1037540:CDS
AAATCAGCTATTCAAGGGTG+GGG	0.556616	7_1:-74204944	Msa1037540:CDS
AAATTAAAATCACCTGGCCT+TGG	0.481839	7_1:+74209939	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAACGCGTTATTGAGTTT+GGG	+	chr7_1:74202254-74202273	None:intergenic	30.0%
CAAATCAAAAGATCTAAGCT+CGG	-	chr7_1:74202446-74202465	Msa1037540:CDS	30.0%
AGCATTAAAAAGACGGTTAA+AGG	-	chr7_1:74202602-74202621	Msa1037540:intron	30.0%
GCATTAAAAAGACGGTTAAA+GGG	-	chr7_1:74202603-74202622	Msa1037540:intron	30.0%
TTGATGAAAAGGGTAAAAAG+GGG	-	chr7_1:74202666-74202685	Msa1037540:intron	30.0%
TTCATTTGGGTGATATAGTT+TGG	-	chr7_1:74202714-74202733	Msa1037540:intron	30.0%
TCATTTGGGTGATATAGTTT+GGG	-	chr7_1:74202715-74202734	Msa1037540:intron	30.0%
AACATAACACAAATTGCATC+GGG	+	chr7_1:74202830-74202849	None:intergenic	30.0%
CTCTATACACCTTTATCTAA+AGG	-	chr7_1:74202892-74202911	Msa1037540:intron	30.0%
AATATTCTTGTTCAGATTCC+AGG	-	chr7_1:74203117-74203136	Msa1037540:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74202176	74211076	74202176	ID=Msa1037540;Name=Msa1037540
chr7_1	mRNA	74202176	74211076	74202176	ID=Msa1037540-mRNA-1;Parent=Msa1037540;Name=Msa1037540-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.82\|0.79\|1\|0.78\|0.75\|24\|265\|912
chr7_1	exon	74202176	74202531	74202176	ID=Msa1037540-mRNA-1:exon:18657;Parent=Msa1037540-mRNA-1
chr7_1	exon	74202716	74202816	74202716	ID=Msa1037540-mRNA-1:exon:18656;Parent=Msa1037540-mRNA-1
chr7_1	exon	74202972	74203046	74202972	ID=Msa1037540-mRNA-1:exon:18655;Parent=Msa1037540-mRNA-1
chr7_1	exon	74204715	74204801	74204715	ID=Msa1037540-mRNA-1:exon:18654;Parent=Msa1037540-mRNA-1
chr7_1	exon	74204907	74204996	74204907	ID=Msa1037540-mRNA-1:exon:18653;Parent=Msa1037540-mRNA-1
chr7_1	exon	74205177	74205224	74205177	ID=Msa1037540-mRNA-1:exon:18652;Parent=Msa1037540-mRNA-1
chr7_1	exon	74205331	74205414	74205331	ID=Msa1037540-mRNA-1:exon:18651;Parent=Msa1037540-mRNA-1
chr7_1	exon	74205592	74205805	74205592	ID=Msa1037540-mRNA-1:exon:18650;Parent=Msa1037540-mRNA-1
chr7_1	exon	74205893	74205957	74205893	ID=Msa1037540-mRNA-1:exon:18649;Parent=Msa1037540-mRNA-1
chr7_1	exon	74206602	74206733	74206602	ID=Msa1037540-mRNA-1:exon:18648;Parent=Msa1037540-mRNA-1
chr7_1	exon	74207257	74207374	74207257	ID=Msa1037540-mRNA-1:exon:18647;Parent=Msa1037540-mRNA-1
chr7_1	exon	74207523	74207622	74207523	ID=Msa1037540-mRNA-1:exon:18646;Parent=Msa1037540-mRNA-1
chr7_1	exon	74207776	74207848	74207776	ID=Msa1037540-mRNA-1:exon:18645;Parent=Msa1037540-mRNA-1
chr7_1	exon	74208071	74208206	74208071	ID=Msa1037540-mRNA-1:exon:18644;Parent=Msa1037540-mRNA-1
chr7_1	exon	74208592	74208684	74208592	ID=Msa1037540-mRNA-1:exon:18643;Parent=Msa1037540-mRNA-1
chr7_1	exon	74208790	74208881	74208790	ID=Msa1037540-mRNA-1:exon:18642;Parent=Msa1037540-mRNA-1
chr7_1	exon	74208995	74209063	74208995	ID=Msa1037540-mRNA-1:exon:18641;Parent=Msa1037540-mRNA-1
chr7_1	exon	74209165	74209233	74209165	ID=Msa1037540-mRNA-1:exon:18640;Parent=Msa1037540-mRNA-1
chr7_1	exon	74209332	74209439	74209332	ID=Msa1037540-mRNA-1:exon:18639;Parent=Msa1037540-mRNA-1
chr7_1	exon	74209952	74210120	74209952	ID=Msa1037540-mRNA-1:exon:18638;Parent=Msa1037540-mRNA-1
chr7_1	exon	74210211	74210266	74210211	ID=Msa1037540-mRNA-1:exon:18637;Parent=Msa1037540-mRNA-1
chr7_1	exon	74210372	74210604	74210372	ID=Msa1037540-mRNA-1:exon:18636;Parent=Msa1037540-mRNA-1
chr7_1	exon	74210623	74210827	74210623	ID=Msa1037540-mRNA-1:exon:18635;Parent=Msa1037540-mRNA-1
chr7_1	exon	74210846	74211076	74210846	ID=Msa1037540-mRNA-1:exon:18634;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74210846	74211076	74210846	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74210623	74210827	74210623	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74210372	74210604	74210372	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74210211	74210266	74210211	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74209952	74210120	74209952	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74209332	74209439	74209332	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74209165	74209233	74209165	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74208995	74209063	74208995	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74208790	74208881	74208790	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74208592	74208684	74208592	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74208071	74208206	74208071	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74207776	74207848	74207776	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74207523	74207622	74207523	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74207257	74207374	74207257	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74206602	74206733	74206602	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74205893	74205957	74205893	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74205592	74205805	74205592	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74205331	74205414	74205331	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74205177	74205224	74205177	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74204907	74204996	74204907	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74204715	74204801	74204715	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74202972	74203046	74202972	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74202716	74202816	74202716	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	CDS	74202441	74202531	74202441	ID=Msa1037540-mRNA-1:cds;Parent=Msa1037540-mRNA-1
chr7_1	three_prime_UTR	74202176	74202440	74202176	ID=Msa1037540-mRNA-1:three_prime_utr;Parent=Msa1037540-mRNA-1

Gene Sequence

>Msa1037540

ATGAAATCTGGAATTCAGAGTCTGAAGCGATGTAGTAAGCTAGAAGAAGAATCTCCATCACAGATTCAGAAGAAGCCCAAACTCAATAACGCGTTTTACTCTGTCCGTGATGGCGAGATCCACTCCAATTCAGCTTCCACCGATTTGAATATTGTAGCTGAAAATGCACCTCCATTGTCGCGATCATCCAGAGGCCGCGTTAAAATGCTTCCATCCAAGTTCAAGGACTCTAAGAAGAAGAAGAAGAGTCAACAAATCAAAAGATCTAAGCTCGGTTTTGAAGGTGAGAATAGTGACATTGGAATTAGATTTGTAAATAAGGGAAAGGAAAACAAATGCGATTTGAAAAAAGAGATTGATAATGGTTTTGATGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAAAGACGGTTAAAGGGAGTCCGGAGAGTGAAAATGGTTTTGATGAAAAGGGTAAAAAGGGGAAAGAGATTTTCAAACTAGTGGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTCGTCATTGATCCTATTTTGCAAGCTCCCGAGTCTGTTCTTAGGCGCTGTGTTCCCGATGCAATTTGTGTTATGTTTTTCGGTTATTCAAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCATACCCGATTGTACAAGACCAAAGAAAGTGACTTTCATAAGGCAATGGAGGAGGCAATGTTGGCAGATAATGGCATTCTGGATCCACATTATAGAGCTGAGCAAATTGTGGAGGGTGCAACTTCCTGTGCTGAACAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGCGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCTGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACGTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATCGTAAATTATCCACATCACAAACATACAAATCAAAAATCAAATCAGTAGAAAACAACCAAAGACCTGTGTTGCCTGAAAATCTAGCGGTGGTGTGCAATGGCTTGAAAGGAATATACTTTCCAAAACTTCATTTAGTTTTGTGCAAGTGTAGCACGTGTGGGTCAAAAAAGCAGGCATTGGCTGAATGGGAACGGCATACAGGTTGTACAGCCAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCACGGAACACAATCCCCAAGCTGGAATTTCCATGAAGTTAAGTCAGAAACAGGTGTTTTCCTTTTTGCAAGAAAAATATGAACCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGGTTTGCAGATGGGTAGAAGATTGGGAAGATAACAAGATTATTATATGTAACAGATGCCAAGTTGCTGTTCACCAAGAGTGCTATGGTGCAAAGAATCTCCAAGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCACCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGTGCTTGGTTCCGGCCTGAAGTTGTTTTCCGAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTGCTCCTAGTTCCTTTTTGAAGTTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACGCAGACGCTAATATATTGTGCAGTTCACAGGATCCCAAATCCAGATTCAGTAATGGTTGTGCATACCCCTCTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCTCAAGGGACGCTTTAGAGGATCAAAGCTTATTTCATCAAATAACTTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCCGCCAAGTGTCGTGTTTACAAAAGGCCTCCCAATAAGAAGGATGATGCACCGATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCCGGGGTGTTTTCTTCATTTAAGGAACGCCTTCACCATTTACAGAAAACGGAAAATTGTAGAGTCTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGTCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGTGAACAGTTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGATGCAACTGATAAGGGCAATATTGCACGTCTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGGGAGATCAGGAGAGCAGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACGTATGATTATTTGTTCGATACAGATGAGCGAGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG

Protein sequence

>Msa1037540

MKSGIQSLKRCSKLEEESPSQIQKKPKLNNAFYSVRDGEIHSNSASTDLNIVAENAPPLSRSSRGRVKMLPSKFKDSKKKKKSQQIKRSKLGFEGENSDIGIRFVNKGKENKCDLKKEIDNGFDEFDYEKHAKSFKSIKKTVKGSPESENGFDEKGKKGKEIFKLVDFHLGDIVWAKCGKTFPAWPAVVIDPILQAPESVLRRCVPDAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGHTRLYKTKESDFHKAMEEAMLADNGILDPHYRAEQIVEGATSCAEQEYHCQGQDTISCYGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCKGKSDRKLSTSQTYKSKIKSVENNQRPVLPENLAVVCNGLKGIYFPKLHLVLCKCSTCGSKKQALAEWERHTGCTAKKWKHSVKVEGTMQPLIKWITEHNPQAGISMKLSQKQVFSFLQEKYEPVYAKWTTERCAVCRWVEDWEDNKIIICNRCQVAVHQECYGAKNLQDFTSWVCRVCETPDVERECCLCPPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIAPSSFLKLRSTVKKGTQITQTLIYCAVHRIPNPDSVMVVHTPLGVFSPRTSLQNLKGRFRGSKLISSNNLELLEPSTSEHYEVEPLSAAKCRVYKRPPNKKDDAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDERDELKVPCHCKAPNCRKFMN*