Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126470 | KAG5024926.1 | 87.273 | 55 | 7 | 0 | 1 | 55 | 42 | 96 | 3.42e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126470 | sp|Q9LMK0|R35A1_ARATH | 84.314 | 51 | 8 | 0 | 1 | 51 | 54 | 104 | 1.11e-26 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126470 | A0A445DLZ5 | 94.231 | 52 | 3 | 0 | 1 | 52 | 54 | 105 | 1.04e-27 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022970 | Msa1126470 | 0.806667 | 7.358200e-50 | -8.615850e-47 |
| Msa0027260 | Msa1126470 | 0.810493 | 1.121368e-50 | -8.615850e-47 |
| Msa0032260 | Msa1126470 | 0.809540 | 1.798905e-50 | -8.615850e-47 |
| Msa0045730 | Msa1126470 | 0.801114 | 1.049087e-48 | -8.615850e-47 |
| Msa0048180 | Msa1126470 | 0.810698 | 1.012897e-50 | -8.615850e-47 |
| Msa0074320 | Msa1126470 | 0.807021 | 6.194386e-50 | -8.615850e-47 |
| Msa0116130 | Msa1126470 | 0.859059 | 5.372480e-63 | -8.615850e-47 |
| Msa0116670 | Msa1126470 | 0.839182 | 1.845886e-57 | -8.615850e-47 |
| Msa0610390 | Msa1126470 | 0.826617 | 2.459468e-54 | -8.615850e-47 |
| Msa0615580 | Msa1126470 | 0.829123 | 6.139683e-55 | -8.615850e-47 |
| Msa0619860 | Msa1126470 | 0.804656 | 1.945740e-49 | -8.615850e-47 |
| Msa0623200 | Msa1126470 | 0.832899 | 7.265106e-56 | -8.615850e-47 |
| Msa0631250 | Msa1126470 | 0.851541 | 8.297673e-61 | -8.615850e-47 |
| Msa0650920 | Msa1126470 | 0.823645 | 1.238937e-53 | -8.615850e-47 |
| Msa0666230 | Msa1126470 | 0.827769 | 1.302810e-54 | -8.615850e-47 |
| Msa0687630 | Msa1126470 | 0.824674 | 7.100317e-54 | -8.615850e-47 |
| Msa0699190 | Msa1126470 | 0.805414 | 1.350578e-49 | -8.615850e-47 |
| Msa0705040 | Msa1126470 | 0.807107 | 5.939897e-50 | -8.615850e-47 |
| Msa0712610 | Msa1126470 | 0.825139 | 5.516767e-54 | -8.615850e-47 |
| Msa0729200 | Msa1126470 | 0.847333 | 1.235883e-59 | -8.615850e-47 |
| Msa0752910 | Msa1126470 | 0.815813 | 7.627389e-52 | -8.615850e-47 |
| Msa0766080 | Msa1126470 | 0.801679 | 8.035284e-49 | -8.615850e-47 |
| Msa0769590 | Msa1126470 | 0.847739 | 9.559372e-60 | -8.615850e-47 |
| Msa0785130 | Msa1126470 | 0.832797 | 7.699863e-56 | -8.615850e-47 |
| Msa0806880 | Msa1126470 | 0.850681 | 1.450868e-60 | -8.615850e-47 |
| Msa0806920 | Msa1126470 | 0.808834 | 2.549287e-50 | -8.615850e-47 |
| Msa0127310 | Msa1126470 | 0.808854 | 2.523963e-50 | -8.615850e-47 |
| Msa0128860 | Msa1126470 | 0.801712 | 7.913094e-49 | -8.615850e-47 |
| Msa0165950 | Msa1126470 | 0.822989 | 1.762950e-53 | -8.615850e-47 |
| Msa0167480 | Msa1126470 | 0.811227 | 7.778634e-51 | -8.615850e-47 |
| Msa0173530 | Msa1126470 | 0.835015 | 2.146235e-56 | -8.615850e-47 |
| Msa0180020 | Msa1126470 | 0.843623 | 1.250118e-58 | -8.615850e-47 |
| Msa0187690 | Msa1126470 | 0.813521 | 2.454236e-51 | -8.615850e-47 |
| Msa0187930 | Msa1126470 | 0.837941 | 3.860695e-57 | -8.615850e-47 |
| Msa0194540 | Msa1126470 | 0.838996 | 2.063186e-57 | -8.615850e-47 |
| Msa0218830 | Msa1126470 | 0.844538 | 7.105673e-59 | -8.615850e-47 |
| Msa0219120 | Msa1126470 | 0.811351 | 7.312483e-51 | -8.615850e-47 |
| Msa0221030 | Msa1126470 | 0.824733 | 6.880124e-54 | -8.615850e-47 |
| Msa0231100 | Msa1126470 | 0.800177 | 1.628557e-48 | -8.615850e-47 |
| Msa0414800 | Msa1126470 | 0.804960 | 1.680423e-49 | -8.615850e-47 |
| Msa0443390 | Msa1126470 | 0.861142 | 1.263009e-63 | -8.615850e-47 |
| Msa0458060 | Msa1126470 | 0.813893 | 2.032748e-51 | -8.615850e-47 |
| Msa0481850 | Msa1126470 | 0.804362 | 2.240802e-49 | -8.615850e-47 |
| Msa0994290 | Msa1126470 | 0.812533 | 4.041424e-51 | -8.615850e-47 |
| Msa1019240 | Msa1126470 | 0.851654 | 7.711725e-61 | -8.615850e-47 |
| Msa1019260 | Msa1126470 | 0.849234 | 3.686615e-60 | -8.615850e-47 |
| Msa1039520 | Msa1126470 | 0.807753 | 4.333686e-50 | -8.615850e-47 |
| Msa1072710 | Msa1126470 | 0.818744 | 1.670575e-52 | -8.615850e-47 |
| Msa1080350 | Msa1126470 | 0.813709 | 2.231183e-51 | -8.615850e-47 |
| Msa1081150 | Msa1126470 | 0.805273 | 1.445353e-49 | -8.615850e-47 |
| Msa1085470 | Msa1126470 | 0.814184 | 1.753282e-51 | -8.615850e-47 |
| Msa1104210 | Msa1126470 | 0.850481 | 1.651385e-60 | -8.615850e-47 |
| Msa0244780 | Msa1126470 | 0.842047 | 3.281491e-58 | -8.615850e-47 |
| Msa0262480 | Msa1126470 | 0.824078 | 9.806603e-54 | -8.615850e-47 |
| Msa0266370 | Msa1126470 | 0.835653 | 1.480077e-56 | -8.615850e-47 |
| Msa0268130 | Msa1126470 | 0.833223 | 6.032265e-56 | -8.615850e-47 |
| Msa0280430 | Msa1126470 | 0.806540 | 7.828481e-50 | -8.615850e-47 |
| Msa0298200 | Msa1126470 | 0.801235 | 9.908923e-49 | -8.615850e-47 |
| Msa0298990 | Msa1126470 | 0.831976 | 1.230226e-55 | -8.615850e-47 |
| Msa0300350 | Msa1126470 | 0.832774 | 7.800540e-56 | -8.615850e-47 |
| Msa0304590 | Msa1126470 | 0.834118 | 3.605939e-56 | -8.615850e-47 |
| Msa0304660 | Msa1126470 | 0.823802 | 1.138130e-53 | -8.615850e-47 |
| Msa0331700 | Msa1126470 | 0.824072 | 9.836751e-54 | -8.615850e-47 |
| Msa0333910 | Msa1126470 | 0.812238 | 4.689163e-51 | -8.615850e-47 |
| Msa0348830 | Msa1126470 | 0.863034 | 3.319357e-64 | -8.615850e-47 |
| Msa1125860 | Msa1126470 | 0.814191 | 1.747333e-51 | -8.615850e-47 |
| Msa1126060 | Msa1126470 | 0.813404 | 2.603621e-51 | -8.615850e-47 |
| Msa1126470 | Msa1126510 | 0.831478 | 1.631805e-55 | -8.615850e-47 |
| Msa1126470 | Msa1138870 | 0.806670 | 7.349822e-50 | -8.615850e-47 |
| Msa1126470 | Msa1165780 | 0.805312 | 1.418596e-49 | -8.615850e-47 |
| Msa1126470 | Msa1166860 | 0.838125 | 3.461899e-57 | -8.615850e-47 |
| Msa1126470 | Msa1166870 | 0.856560 | 2.961845e-62 | -8.615850e-47 |
| Msa1126470 | Msa1184370 | 0.820473 | 6.732142e-53 | -8.615850e-47 |
| Msa1126470 | Msa1227690 | 0.821651 | 3.605837e-53 | -8.615850e-47 |
| Msa1126470 | Msa1257510 | 0.822441 | 2.364951e-53 | -8.615850e-47 |
| Msa1126470 | Msa1281190 | 0.812778 | 3.571799e-51 | -8.615850e-47 |
| Msa1126470 | Msa1331710 | 0.823798 | 1.140703e-53 | -8.615850e-47 |
| Msa1126470 | Msa1338190 | 0.815013 | 1.149127e-51 | -8.615850e-47 |
| Msa1126470 | Msa1349570 | 0.874361 | 7.171250e-68 | -8.615850e-47 |
| Msa1126470 | Msa1356790 | 0.820417 | 6.935826e-53 | -8.615850e-47 |
| Msa1126470 | Msa1362790 | 0.827544 | 1.475651e-54 | -8.615850e-47 |
| Msa1126470 | Msa1363330 | 0.844244 | 8.524283e-59 | -8.615850e-47 |
| Msa1126470 | Msa1363860 | 0.829901 | 3.972167e-55 | -8.615850e-47 |
| Msa1126470 | Msa1369190 | 0.900371 | 7.833613e-78 | -8.615850e-47 |
| Msa1126470 | Msa1379760 | 0.810262 | 1.258143e-50 | -8.615850e-47 |
| Msa1126470 | Msa1386600 | 0.843929 | 1.035446e-58 | -8.615850e-47 |
| Msa1126470 | Msa1404190 | 0.806298 | 8.803133e-50 | -8.615850e-47 |
| Msa1126470 | Msa1407070 | 0.824055 | 9.931132e-54 | -8.615850e-47 |
| Msa1126470 | Msa1413500 | 0.849857 | 2.470144e-60 | -8.615850e-47 |
| Msa1126470 | Msa1426490 | 0.806871 | 6.663573e-50 | -8.615850e-47 |
| Msa1126470 | Msa1427560 | 0.840457 | 8.595345e-58 | -8.615850e-47 |
| Msa1126470 | Msa1442850 | 0.805539 | 1.271495e-49 | -8.615850e-47 |
| Msa1126470 | Msa1448690 | 0.829136 | 6.094934e-55 | -8.615850e-47 |
| Msa1126470 | Msa1450280 | 0.850217 | 1.958799e-60 | -8.615850e-47 |
| Msa1126470 | Msa1456050 | 0.820561 | 6.428042e-53 | -8.615850e-47 |
| Msa1126470 | Msa1462860 | 0.844674 | 6.529908e-59 | -8.615850e-47 |
| Msa1126470 | Msa1465260 | 0.807113 | 5.923475e-50 | -8.615850e-47 |
| Msa0526540 | Msa1126470 | 0.848581 | 5.594869e-60 | -8.615850e-47 |
| Msa0527150 | Msa1126470 | 0.823501 | 1.338836e-53 | -8.615850e-47 |
| Msa0576940 | Msa1126470 | 0.846490 | 2.102388e-59 | -8.615850e-47 |
| Msa0581070 | Msa1126470 | 0.805942 | 1.046233e-49 | -8.615850e-47 |
| Msa0876170 | Msa1126470 | 0.800409 | 1.460616e-48 | -8.615850e-47 |
| Msa0888810 | Msa1126470 | 0.809939 | 1.476417e-50 | -8.615850e-47 |
| Msa0945480 | Msa1126470 | 0.826701 | 2.348322e-54 | -8.615850e-47 |
| Msa0960830 | Msa1126470 | 0.821387 | 4.148891e-53 | -8.615850e-47 |
| Msa0974810 | Msa1126470 | 0.800719 | 1.263378e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126470 | MtrunA17_Chr7g0268071 | 86.792 | 53 | 7 | 0 | 1 | 53 | 45 | 97 | 3.69e-30 | 101 |
| Msa1126470 | MtrunA17_Chr7g0268081 | 88.235 | 51 | 6 | 0 | 1 | 51 | 46 | 96 | 5.30e-30 | 100 |
| Msa1126470 | MtrunA17_Chr7g0268061 | 88.235 | 51 | 6 | 0 | 1 | 51 | 46 | 96 | 5.30e-30 | 100 |
| Msa1126470 | MtrunA17_Chr7g0268051 | 92.157 | 51 | 4 | 0 | 1 | 51 | 54 | 104 | 1.16e-29 | 100 |
| Msa1126470 | MtrunA17_Chr5g0436331 | 86.275 | 51 | 7 | 0 | 1 | 51 | 79 | 129 | 1.81e-27 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126470 | AT1G07070.1 | 84.314 | 51 | 8 | 0 | 1 | 51 | 54 | 104 | 1.12e-27 | 95.9 |
| Msa1126470 | AT1G74270.1 | 84.314 | 51 | 8 | 0 | 1 | 51 | 54 | 104 | 1.46e-27 | 95.5 |
| Msa1126470 | AT3G55750.1 | 80.392 | 51 | 10 | 0 | 1 | 51 | 53 | 103 | 1.37e-26 | 93.2 |
| Msa1126470 | AT1G41880.1 | 80.392 | 51 | 10 | 0 | 1 | 51 | 53 | 103 | 1.45e-26 | 93.2 |
| Msa1126470 | AT1G41880.2 | 80.392 | 51 | 10 | 0 | 1 | 51 | 53 | 103 | 1.45e-26 | 93.2 |
Find 62 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATGACTCAGTTATTT+TGG | 0.071117 | 7_3:+78022445 | None:intergenic |
| GGGAAGATTTGACTTGAATT+TGG | 0.232635 | 7_3:+78024604 | None:intergenic |
| TTAAATTATTACCATTGATT+TGG | 0.240677 | 7_3:+78024580 | None:intergenic |
| TGGTGTTCACTCCTTCAATT+TGG | 0.242520 | 7_3:+78024762 | None:intergenic |
| TAAATTATTACCATTGATTT+GGG | 0.268294 | 7_3:+78024581 | None:intergenic |
| CTGTTTAGACTGTTCTTTGA+TGG | 0.273778 | 7_3:-78022606 | Msa1126470:three_prime_UTR |
| AATTAGAGTTATATTGTATT+GGG | 0.322508 | 7_3:+78022399 | None:intergenic |
| TGTTGCAGATTCAGGTGATT+AGG | 0.325385 | 7_3:-78022704 | Msa1126470:intron |
| TAATTAGAGTTATATTGTAT+TGG | 0.355812 | 7_3:+78022398 | None:intergenic |
| GCCCCATATGCAGCGGTAAT+GGG | 0.380708 | 7_3:+78024667 | None:intergenic |
| TAGATAATTAAAGATATTAA+CGG | 0.386312 | 7_3:+78022308 | None:intergenic |
| CCAGAGATGTGTTTGGGTAC+TGG | 0.398125 | 7_3:+78024786 | None:intergenic |
| ATTTGGACCAGAGATGTGTT+TGG | 0.405595 | 7_3:+78024779 | None:intergenic |
| GAACCCATTACCGCTGCATA+TGG | 0.409627 | 7_3:-78024670 | Msa1126470:CDS |
| TGCCCCATATGCAGCGGTAA+TGG | 0.410420 | 7_3:+78024666 | None:intergenic |
| GATGGAATGTTGTGTACTGC+TGG | 0.411086 | 7_3:-78022588 | Msa1126470:three_prime_UTR |
| TTTGGACCAGAGATGTGTTT+GGG | 0.422500 | 7_3:+78024780 | None:intergenic |
| GTGGACTTGGTTATCTCATA+TGG | 0.425109 | 7_3:-78022526 | Msa1126470:three_prime_UTR |
| TTGGTATGCTGGCAAGAAAA+TGG | 0.428506 | 7_3:-78024726 | Msa1126470:exon |
| GATTAGGTCAGTAGAGTTGC+GGG | 0.443533 | 7_3:-78022688 | Msa1126470:CDS |
| CAGCACCATGTGTGTGGACT+TGG | 0.449535 | 7_3:-78022539 | Msa1126470:three_prime_UTR |
| GAAGAGGTAGCTTGGTATGC+TGG | 0.459649 | 7_3:-78024737 | Msa1126470:five_prime_UTR |
| AACCCATTACCGCTGCATAT+GGG | 0.459805 | 7_3:-78024669 | Msa1126470:CDS |
| ACATCTCTGGTCCAAATTGA+AGG | 0.462436 | 7_3:-78024773 | Msa1126470:five_prime_UTR |
| AATGTTGTGTACTGCTGGAT+TGG | 0.462777 | 7_3:-78022583 | Msa1126470:three_prime_UTR |
| TACGTGAGGGGTACAATCCT+TGG | 0.470557 | 7_3:-78024906 | Msa1126470:five_prime_UTR |
| GGTTCCATTCTTCTTCACCT+TGG | 0.492441 | 7_3:+78024688 | None:intergenic |
| TCGTGTTACTCCCTCCGTCC+CGG | 0.494958 | 7_3:-78022500 | Msa1126470:three_prime_UTR |
| GTACAATCCTTGGATACAAA+AGG | 0.498010 | 7_3:-78024896 | Msa1126470:intron |
| AAGGCCAAGGTGAAGAAGAA+TGG | 0.517743 | 7_3:-78024692 | Msa1126470:CDS |
| GTTTGGGTACTGGTTTACTT+TGG | 0.518411 | 7_3:+78024796 | None:intergenic |
| ATACCAAGCTACCTCTTCCT+TGG | 0.523366 | 7_3:+78024742 | None:intergenic |
| GCATATGGGGCAAGGTTACA+AGG | 0.526923 | 7_3:-78024655 | Msa1126470:CDS |
| CCAGTACCCAAACACATCTC+TGG | 0.530530 | 7_3:-78024786 | Msa1126470:five_prime_UTR |
| TTGTATTAGGCTTTACGTGA+GGG | 0.533599 | 7_3:-78024919 | Msa1126470:five_prime_UTR |
| CATATGTGAAGTGGTTGACT+TGG | 0.537655 | 7_3:+78022348 | None:intergenic |
| ACCCATTACCGCTGCATATG+GGG | 0.539984 | 7_3:-78024668 | Msa1126470:CDS |
| GTCAGATATTCCGGGACGGA+GGG | 0.550311 | 7_3:+78022490 | None:intergenic |
| TTTGTATTAGGCTTTACGTG+AGG | 0.553810 | 7_3:-78024920 | Msa1126470:five_prime_UTR |
| AGGAGTGAACACCAAGGAAG+AGG | 0.555068 | 7_3:-78024753 | Msa1126470:five_prime_UTR |
| AATTATTACCATTGATTTGG+GGG | 0.558553 | 7_3:+78024583 | None:intergenic |
| TAACGGTCAAAATCGTGCAT+TGG | 0.561420 | 7_3:+78022325 | None:intergenic |
| GGCATATATCTACAAGGCCA+AGG | 0.574061 | 7_3:-78024705 | Msa1126470:CDS |
| TGATTAGGTCAGTAGAGTTG+CGG | 0.585635 | 7_3:-78022689 | Msa1126470:CDS |
| AAATTATTACCATTGATTTG+GGG | 0.588097 | 7_3:+78024582 | None:intergenic |
| ACACCAAGGAAGAGGTAGCT+TGG | 0.593143 | 7_3:-78024745 | Msa1126470:five_prime_UTR |
| GGTCAGATATTCCGGGACGG+AGG | 0.593751 | 7_3:+78022489 | None:intergenic |
| TACAGTCAGCACCATGTGTG+TGG | 0.604128 | 7_3:-78022545 | Msa1126470:three_prime_UTR |
| TGTATTAGGCTTTACGTGAG+GGG | 0.604275 | 7_3:-78024918 | Msa1126470:five_prime_UTR |
| GGCAAGGTTACAAGGCCACA+TGG | 0.606069 | 7_3:-78024647 | Msa1126470:CDS |
| AAAATAGACAAAATTCCTTG+AGG | 0.608684 | 7_3:+78022651 | None:intergenic |
| ATTATTACCATTGATTTGGG+GGG | 0.627666 | 7_3:+78024584 | None:intergenic |
| GAAAATGGCATATATCTACA+AGG | 0.630318 | 7_3:-78024711 | Msa1126470:exon |
| GATAACCAAGTCCACACACA+TGG | 0.640711 | 7_3:+78022534 | None:intergenic |
| TTACCGCTGCATATGGGGCA+AGG | 0.645005 | 7_3:-78024663 | Msa1126470:CDS |
| GAACAGTCTAAACAGAAGAA+CGG | 0.650910 | 7_3:+78022614 | None:intergenic |
| TAACCTTGCCCCATATGCAG+CGG | 0.677626 | 7_3:+78024660 | None:intergenic |
| GTGCATTGGCATATGTGAAG+TGG | 0.685579 | 7_3:+78022339 | None:intergenic |
| ATGGGTCAGATATTCCGGGA+CGG | 0.686508 | 7_3:+78022486 | None:intergenic |
| ACAAGGCCACATGGTAACAG+TGG | 0.690947 | 7_3:-78024638 | Msa1126470:CDS |
| ACAATACCACTGTTACCATG+TGG | 0.724821 | 7_3:+78024632 | None:intergenic |
| AATTGAAGGAGTGAACACCA+AGG | 0.776962 | 7_3:-78024759 | Msa1126470:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAATCATCATT+TGG | - | chr7_3:78022637-78022656 | Msa1126470:three_prime_UTR | 10.0% |
| !!! | TTTTTTTTTAATCATCATTT+GGG | - | chr7_3:78022638-78022657 | Msa1126470:three_prime_UTR | 10.0% |
| !! | ATTTATGTTTAAAGAATTAA+TGG | + | chr7_3:78023388-78023407 | None:intergenic | 10.0% |
| !!! | ATCTCATATTTTTTTATTTA+TGG | + | chr7_3:78023581-78023600 | None:intergenic | 10.0% |
| !!! | TTTTATTTGTACAAAAAAAA+AGG | - | chr7_3:78023676-78023695 | Msa1126470:intron | 10.0% |
| !! | AATTTAATTAAGGAAAATTT+AGG | - | chr7_3:78024013-78024032 | Msa1126470:intron | 10.0% |
| !! | TAAAGAATAAAAAGAATTAA+TGG | - | chr7_3:78024038-78024057 | Msa1126470:intron | 10.0% |
| !!! | AATTTTGCAATTTTATAAAT+AGG | - | chr7_3:78024383-78024402 | Msa1126470:intron | 10.0% |
| !!! | ATTTTGCAATTTTATAAATA+GGG | - | chr7_3:78024384-78024403 | Msa1126470:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr7_3:78024878-78024897 | None:intergenic | 10.0% |
| !!! | TAAATTATTACCATTGATTT+GGG | + | chr7_3:78022605-78022624 | None:intergenic | 15.0% |
| !!! | TTAAATTATTACCATTGATT+TGG | + | chr7_3:78022606-78022625 | None:intergenic | 15.0% |
| !! | ATTGAATATGTAGTAATTAT+AGG | + | chr7_3:78023604-78023623 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAGAATAGAAAAG+TGG | - | chr7_3:78023653-78023672 | Msa1126470:intron | 15.0% |
| !!! | TTTTATTGAATCATCATTTT+AGG | - | chr7_3:78023867-78023886 | Msa1126470:intron | 15.0% |
| !! | ATTATGTTTAATTCCTTAAA+AGG | - | chr7_3:78023978-78023997 | Msa1126470:intron | 15.0% |
| !!! | TTAATTCTTTAATCCTTTTA+AGG | + | chr7_3:78023994-78024013 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTAAAAAAT+GGG | + | chr7_3:78024718-78024737 | None:intergenic | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr7_3:78024787-78024806 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr7_3:78024788-78024807 | None:intergenic | 15.0% |
| !!! | AAATTATTACCATTGATTTG+GGG | + | chr7_3:78022604-78022623 | None:intergenic | 20.0% |
| !!! | GCTTACATATTTTACAAATA+TGG | - | chr7_3:78022893-78022912 | Msa1126470:intron | 20.0% |
| !! | TATCTAATATGAGAACTATA+TGG | - | chr7_3:78023106-78023125 | Msa1126470:intron | 20.0% |
| !! | AAAAAAAAAAAACAGGTTTG+AGG | + | chr7_3:78024073-78024092 | None:intergenic | 20.0% |
| !! | AAATCCATATTTCTTCATTA+TGG | + | chr7_3:78023495-78023514 | None:intergenic | 20.0% |
| !! | AAAAAGAATCGTGTATTTAA+TGG | + | chr7_3:78023523-78023542 | None:intergenic | 20.0% |
| !! | ACGTTTCTTAATTAAAAAGA+GGG | - | chr7_3:78023625-78023644 | Msa1126470:intron | 20.0% |
| !! | GTCAACAAAAAAAAAAAAAC+AGG | - | chr7_3:78024066-78024085 | Msa1126470:intron | 20.0% |
| !! | AAAAAAAAAAAACAGGTTTG+AGG | - | chr7_3:78024073-78024092 | Msa1126470:intron | 20.0% |
| !!! | GGACACTTTTTTTTAAAAAA+TGG | + | chr7_3:78024719-78024738 | None:intergenic | 20.0% |
| !! | ACTTTTCTAATGAAAATGTC+TGG | - | chr7_3:78022313-78022332 | Msa1126470:three_prime_UTR | 25.0% |
| !!! | AATTATTACCATTGATTTGG+GGG | + | chr7_3:78022603-78022622 | None:intergenic | 25.0% |
| !!! | AAACAATTCAAAAAGCATCT+AGG | + | chr7_3:78022760-78022779 | None:intergenic | 25.0% |
| !! | ATTGTTTGTCCTTTTCTTTT+TGG | - | chr7_3:78022773-78022792 | Msa1126470:intron | 25.0% |
| ! | TGTTATTATACTAGCAAGTT+TGG | + | chr7_3:78022944-78022963 | None:intergenic | 25.0% |
| ! | TTATCTTATCATGATTCATG+AGG | - | chr7_3:78023040-78023059 | Msa1126470:intron | 25.0% |
| ! | ACTATATGGTTTCTAAATCA+TGG | - | chr7_3:78023120-78023139 | Msa1126470:intron | 25.0% |
| !! | TTTTCTATCATAGATCAGAT+AGG | + | chr7_3:78023159-78023178 | None:intergenic | 25.0% |
| ! | CACGTTTCTTAATTAAAAAG+AGG | - | chr7_3:78023624-78023643 | Msa1126470:intron | 25.0% |
| ! | CTCTATGATAACATAGTTTA+TGG | - | chr7_3:78024270-78024289 | Msa1126470:intron | 25.0% |
| !!! | TTTTTTTTTGTTGCAGATTC+AGG | - | chr7_3:78024471-78024490 | Msa1126470:intron | 25.0% |
| ! | AAAATAGACAAAATTCCTTG+AGG | + | chr7_3:78024535-78024554 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr7_3:78024740-78024759 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr7_3:78024741-78024760 | None:intergenic | 25.0% |
| ! | AAGTTTACCTTTTGTATCCA+AGG | + | chr7_3:78022297-78022316 | None:intergenic | 30.0% |
| GAAAATGGCATATATCTACA+AGG | - | chr7_3:78022472-78022491 | Msa1126470:three_prime_UTR | 30.0% | |
| !! | ATTATTACCATTGATTTGGG+GGG | + | chr7_3:78022602-78022621 | None:intergenic | 30.0% |
| TGTTATCTTAATCTCGTGTT+TGG | - | chr7_3:78022669-78022688 | Msa1126470:exon | 30.0% | |
| TCGTGTTTGGATTAATTTCA+GGG | - | chr7_3:78022682-78022701 | Msa1126470:CDS | 30.0% | |
| GTTTACCTCATATATTGCTT+GGG | + | chr7_3:78022732-78022751 | None:intergenic | 30.0% | |
| AGTTTACCTCATATATTGCT+TGG | + | chr7_3:78022733-78022752 | None:intergenic | 30.0% | |
| ! | CAAGCATTTTCTCATTTGAT+GGG | - | chr7_3:78022838-78022857 | Msa1126470:intron | 30.0% |
| ! | AAGCATTTTCTCATTTGATG+GGG | - | chr7_3:78022839-78022858 | Msa1126470:intron | 30.0% |
| AAATATGTAAGCACGTAAAC+AGG | + | chr7_3:78022885-78022904 | None:intergenic | 30.0% | |
| AAGAATTGATGTCTACATGA+AGG | + | chr7_3:78022991-78023010 | None:intergenic | 30.0% | |
| GTTGCCATAATGAAGAAATA+TGG | - | chr7_3:78023488-78023507 | Msa1126470:intron | 30.0% | |
| CTCTCGTATTTCTTCATTTA+TGG | - | chr7_3:78023922-78023941 | Msa1126470:intron | 30.0% | |
| ! | AAAAGACGTTTTTATCCCTT+CGG | + | chr7_3:78024207-78024226 | None:intergenic | 30.0% |
| ! | ACTTTCTCTTGATGTTACTT+TGG | - | chr7_3:78024447-78024466 | Msa1126470:intron | 30.0% |
| AAAAAATGGGTCAGATATTC+CGG | + | chr7_3:78024705-78024724 | None:intergenic | 30.0% | |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr7_3:78024820-78024839 | None:intergenic | 30.0% |
| GTACAATCCTTGGATACAAA+AGG | - | chr7_3:78022287-78022306 | Msa1126470:three_prime_UTR | 35.0% | |
| AAATGTCTGGTTAGATGCTT+TGG | - | chr7_3:78022326-78022345 | Msa1126470:three_prime_UTR | 35.0% | |
| !! | GGGAAGATTTGACTTGAATT+TGG | + | chr7_3:78022582-78022601 | None:intergenic | 35.0% |
| CTCGTGTTTGGATTAATTTC+AGG | - | chr7_3:78022681-78022700 | Msa1126470:CDS | 35.0% | |
| GTACATAAATACTCTTACGC+GGG | + | chr7_3:78022710-78022729 | None:intergenic | 35.0% | |
| GGTACATAAATACTCTTACG+CGG | + | chr7_3:78022711-78022730 | None:intergenic | 35.0% | |
| ATGTACCCAAGCAATATATG+AGG | - | chr7_3:78022724-78022743 | Msa1126470:intron | 35.0% | |
| CGAAAGAAGCCAAAAAGAAA+AGG | + | chr7_3:78022785-78022804 | None:intergenic | 35.0% | |
| CCATCAAATGAGAAAATGCT+TGG | + | chr7_3:78022840-78022859 | None:intergenic | 35.0% | |
| ! | CCAAGCATTTTCTCATTTGA+TGG | - | chr7_3:78022837-78022856 | Msa1126470:intron | 35.0% |
| !! | TCTTATGCTCTAGAGTTATG+CGG | - | chr7_3:78023064-78023083 | Msa1126470:intron | 35.0% |
| ! | AAAAGACGTTTTTACCCCTT+CGG | - | chr7_3:78023218-78023237 | Msa1126470:intron | 35.0% |
| TAACTGCCGAATTATGAAAC+CGG | - | chr7_3:78023245-78023264 | Msa1126470:intron | 35.0% | |
| TTAACTACCGAGGAAAACTT+CGG | - | chr7_3:78023274-78023293 | Msa1126470:intron | 35.0% | |
| CATCTGCAATCAGTAGTTAA+TGG | + | chr7_3:78023894-78023913 | None:intergenic | 35.0% | |
| CCAAGGAAATCTGAAAACTT+CGG | + | chr7_3:78024118-78024137 | None:intergenic | 35.0% | |
| TTAACTACCGAGGAAAACTT+CGG | + | chr7_3:78023274-78023293 | None:intergenic | 35.0% | |
| TAACTGCCGAATTATGAAAC+CGG | + | chr7_3:78023245-78023264 | None:intergenic | 35.0% | |
| !!! | GATGATTTTTAGTAGCCTCA+AGG | - | chr7_3:78024517-78024536 | Msa1126470:intron | 35.0% |
| GAACAGTCTAAACAGAAGAA+CGG | + | chr7_3:78024572-78024591 | None:intergenic | 35.0% | |
| CTGTTTAGACTGTTCTTTGA+TGG | - | chr7_3:78024577-78024596 | Msa1126470:intron | 35.0% | |
| AAAAATGGGTCAGATATTCC+GGG | + | chr7_3:78024704-78024723 | None:intergenic | 35.0% | |
| !! | GTTTGGGTACTGGTTTACTT+TGG | + | chr7_3:78022390-78022409 | None:intergenic | 40.0% |
| TTTGGACCAGAGATGTGTTT+GGG | + | chr7_3:78022406-78022425 | None:intergenic | 40.0% | |
| ATTTGGACCAGAGATGTGTT+TGG | + | chr7_3:78022407-78022426 | None:intergenic | 40.0% | |
| ACATCTCTGGTCCAAATTGA+AGG | - | chr7_3:78022410-78022429 | Msa1126470:three_prime_UTR | 40.0% | |
| TGGTGTTCACTCCTTCAATT+TGG | + | chr7_3:78022424-78022443 | None:intergenic | 40.0% | |
| AATTGAAGGAGTGAACACCA+AGG | - | chr7_3:78022424-78022443 | Msa1126470:three_prime_UTR | 40.0% | |
| TTGGTATGCTGGCAAGAAAA+TGG | - | chr7_3:78022457-78022476 | Msa1126470:three_prime_UTR | 40.0% | |
| ACAATACCACTGTTACCATG+TGG | + | chr7_3:78022554-78022573 | None:intergenic | 40.0% | |
| AAATCTTCCCCCCAAATCAA+TGG | - | chr7_3:78022592-78022611 | Msa1126470:three_prime_UTR | 40.0% | |
| AAATGCTTGGAAAACACGAG+AGG | + | chr7_3:78022827-78022846 | None:intergenic | 40.0% | |
| ACAGGTCAGAAGTTTCAAAC+AGG | + | chr7_3:78022867-78022886 | None:intergenic | 40.0% | |
| ! | TGCTGTTGACACATTAGCTT+TGG | - | chr7_3:78023180-78023199 | Msa1126470:intron | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | - | chr7_3:78023185-78023204 | Msa1126470:intron | 40.0% |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | + | chr7_3:78024141-78024160 | None:intergenic | 40.0% |
| ! | CCGAAGTTTTCAGATTTCCT+CGG | + | chr7_3:78024115-78024134 | None:intergenic | 40.0% |
| CCGAGGAAATCTGAAAACTT+CGG | - | chr7_3:78023307-78023326 | Msa1126470:intron | 40.0% | |
| ! | AAACAGGTTTGAGGTTTCCT+CGG | + | chr7_3:78024082-78024101 | None:intergenic | 40.0% |
| ! | AAACAGGTTTGAGGTTTCCT+CGG | - | chr7_3:78024082-78024101 | Msa1126470:intron | 40.0% |
| ! | CCGAAGTTTTCAGATTTCCT+TGG | - | chr7_3:78024115-78024134 | Msa1126470:intron | 40.0% |
| ! | TTAACTGCCGAAGTTTTCCT+CGG | - | chr7_3:78024141-78024160 | Msa1126470:intron | 40.0% |
| ! | CTGTAGCCGGTTTCATAATT+CGG | - | chr7_3:78024171-78024190 | Msa1126470:intron | 40.0% |
| !! | TTGACACATTAGCTTTGGCT+AGG | + | chr7_3:78023185-78023204 | None:intergenic | 40.0% |
| ! | TGCTGTTGACACATTAGCTT+TGG | + | chr7_3:78023180-78023199 | None:intergenic | 40.0% |
| TATAAATAGGGCCTCTTCTC+TGG | - | chr7_3:78024396-78024415 | Msa1126470:intron | 40.0% | |
| TGTTGCAGATTCAGGTGATT+AGG | - | chr7_3:78024479-78024498 | Msa1126470:intron | 40.0% | |
| TGATTAGGTCAGTAGAGTTG+CGG | - | chr7_3:78024494-78024513 | Msa1126470:intron | 40.0% | |
| AATGTTGTGTACTGCTGGAT+TGG | - | chr7_3:78024600-78024619 | Msa1126470:CDS | 40.0% | |
| ! | GTGGACTTGGTTATCTCATA+TGG | - | chr7_3:78024657-78024676 | Msa1126470:CDS | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr7_3:78024817-78024836 | None:intergenic | 40.0% |
| CATATGTGAAGTGGTTGACT+TGG | + | chr7_3:78024838-78024857 | None:intergenic | 40.0% | |
| TAACGGTCAAAATCGTGCAT+TGG | + | chr7_3:78024861-78024880 | None:intergenic | 40.0% | |
| ATACCAAGCTACCTCTTCCT+TGG | + | chr7_3:78022444-78022463 | None:intergenic | 45.0% | |
| GGCATATATCTACAAGGCCA+AGG | - | chr7_3:78022478-78022497 | Msa1126470:three_prime_UTR | 45.0% | |
| AAGGCCAAGGTGAAGAAGAA+TGG | - | chr7_3:78022491-78022510 | Msa1126470:three_prime_UTR | 45.0% | |
| GGTTCCATTCTTCTTCACCT+TGG | + | chr7_3:78022498-78022517 | None:intergenic | 45.0% | |
| AACCCATTACCGCTGCATAT+GGG | - | chr7_3:78022514-78022533 | Msa1126470:three_prime_UTR | 45.0% | |
| TTCGGCAGTTAACTACCGAA+GGG | + | chr7_3:78024189-78024208 | None:intergenic | 45.0% | |
| ATTCGGCAGTTAACTACCGA+AGG | + | chr7_3:78024188-78024207 | None:intergenic | 45.0% | |
| ! | CTGCAGCCGGTTTCATAATT+CGG | + | chr7_3:78023254-78023273 | None:intergenic | 45.0% |
| ATTCGGCAGTTAACTACCGA+AGG | - | chr7_3:78024188-78024207 | Msa1126470:intron | 45.0% | |
| TTCGGCAGTTAACTACCGAA+GGG | - | chr7_3:78024189-78024208 | Msa1126470:intron | 45.0% | |
| GATTAGGTCAGTAGAGTTGC+GGG | - | chr7_3:78024495-78024514 | Msa1126470:intron | 45.0% | |
| GATGGAATGTTGTGTACTGC+TGG | - | chr7_3:78024595-78024614 | Msa1126470:CDS | 45.0% | |
| GATAACCAAGTCCACACACA+TGG | + | chr7_3:78024652-78024671 | None:intergenic | 45.0% | |
| ! | GTGCATTGGCATATGTGAAG+TGG | + | chr7_3:78024847-78024866 | None:intergenic | 45.0% |
| !! | TAAAAAAAAAAAAAAAAAAC+AGG | + | chr7_3:78023359-78023378 | None:intergenic | 5.0% |
| !! | TAAAGAATTAAATTTAAATA+AGG | + | chr7_3:78023414-78023433 | None:intergenic | 5.0% |
| !!! | TTAATTCTTTAATTATTTTA+AGG | - | chr7_3:78023423-78023442 | Msa1126470:intron | 5.0% |
| !! | TAAAGAATTAAATTTAATTA+AGG | - | chr7_3:78024003-78024022 | Msa1126470:intron | 5.0% |
| ! | TACGTGAGGGGTACAATCCT+TGG | - | chr7_3:78022277-78022296 | Msa1126470:three_prime_UTR | 50.0% |
| CCAGAGATGTGTTTGGGTAC+TGG | + | chr7_3:78022400-78022419 | None:intergenic | 50.0% | |
| CCAGTACCCAAACACATCTC+TGG | - | chr7_3:78022397-78022416 | Msa1126470:three_prime_UTR | 50.0% | |
| AGGAGTGAACACCAAGGAAG+AGG | - | chr7_3:78022430-78022449 | Msa1126470:three_prime_UTR | 50.0% | |
| ACACCAAGGAAGAGGTAGCT+TGG | - | chr7_3:78022438-78022457 | Msa1126470:three_prime_UTR | 50.0% | |
| GAAGAGGTAGCTTGGTATGC+TGG | - | chr7_3:78022446-78022465 | Msa1126470:three_prime_UTR | 50.0% | |
| GAACCCATTACCGCTGCATA+TGG | - | chr7_3:78022513-78022532 | Msa1126470:three_prime_UTR | 50.0% | |
| ACCCATTACCGCTGCATATG+GGG | - | chr7_3:78022515-78022534 | Msa1126470:three_prime_UTR | 50.0% | |
| TAACCTTGCCCCATATGCAG+CGG | + | chr7_3:78022526-78022545 | None:intergenic | 50.0% | |
| GCATATGGGGCAAGGTTACA+AGG | - | chr7_3:78022528-78022547 | Msa1126470:three_prime_UTR | 50.0% | |
| ACAAGGCCACATGGTAACAG+TGG | - | chr7_3:78022545-78022564 | Msa1126470:three_prime_UTR | 50.0% | |
| TCGGCAGTTAACTACCGAAG+GGG | + | chr7_3:78024190-78024209 | None:intergenic | 50.0% | |
| ACTTCGGCAGTTAACTGCCA+AGG | + | chr7_3:78024135-78024154 | None:intergenic | 50.0% | |
| CCTCGGTAGTTAACTGTAGC+CGG | - | chr7_3:78024158-78024177 | Msa1126470:intron | 50.0% | |
| TACAGTCAGCACCATGTGTG+TGG | - | chr7_3:78024638-78024657 | Msa1126470:CDS | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | + | chr7_3:78024700-78024719 | None:intergenic | 50.0% | |
| GCCCCATATGCAGCGGTAAT+GGG | + | chr7_3:78022519-78022538 | None:intergenic | 55.0% | |
| TGCCCCATATGCAGCGGTAA+TGG | + | chr7_3:78022520-78022539 | None:intergenic | 55.0% | |
| TTACCGCTGCATATGGGGCA+AGG | - | chr7_3:78022520-78022539 | Msa1126470:three_prime_UTR | 55.0% | |
| GGCAAGGTTACAAGGCCACA+TGG | - | chr7_3:78022536-78022555 | Msa1126470:three_prime_UTR | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | + | chr7_3:78023267-78023286 | None:intergenic | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | - | chr7_3:78023290-78023309 | Msa1126470:intron | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | - | chr7_3:78023290-78023309 | Msa1126470:intron | 55.0% | |
| ACTTCGGCAGTTAACTGCCG+AGG | + | chr7_3:78023290-78023309 | None:intergenic | 55.0% | |
| CCGGCTACAGTTAACTACCG+AGG | + | chr7_3:78024161-78024180 | None:intergenic | 55.0% | |
| ! | GTGCTGCTAGACCAGAGAAG+AGG | + | chr7_3:78024410-78024429 | None:intergenic | 55.0% |
| CAGCACCATGTGTGTGGACT+TGG | - | chr7_3:78024644-78024663 | Msa1126470:CDS | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | + | chr7_3:78024696-78024715 | None:intergenic | 55.0% | |
| CCGGCTGCAGTTAACTACCG+AGG | - | chr7_3:78023264-78023283 | Msa1126470:intron | 60.0% | |
| CTCTGGTCTAGCAGCACGCA+TGG | - | chr7_3:78024413-78024432 | Msa1126470:intron | 60.0% | |
| ! | TCGTGTTACTCCCTCCGTCC+CGG | - | chr7_3:78024683-78024702 | Msa1126470:CDS | 60.0% |
| GGTCAGATATTCCGGGACGG+AGG | + | chr7_3:78024697-78024716 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78022266 | 78024939 | 78022266 | ID=Msa1126470;Name=Msa1126470 |
| chr7_3 | mRNA | 78022266 | 78024939 | 78022266 | ID=Msa1126470-mRNA-1;Parent=Msa1126470;Name=Msa1126470-mRNA-1;_AED=0.40;_eAED=0.40;_QI=134|0.5|1|1|1|1|3|411|59 |
| chr7_3 | exon | 78022266 | 78022718 | 78022266 | ID=Msa1126470-mRNA-1:exon:21690;Parent=Msa1126470-mRNA-1 |
| chr7_3 | exon | 78024592 | 78024820 | 78024592 | ID=Msa1126470-mRNA-1:exon:21689;Parent=Msa1126470-mRNA-1 |
| chr7_3 | exon | 78024897 | 78024939 | 78024897 | ID=Msa1126470-mRNA-1:exon:21688;Parent=Msa1126470-mRNA-1 |
| chr7_3 | five_prime_UTR | 78024897 | 78024939 | 78024897 | ID=Msa1126470-mRNA-1:five_prime_utr;Parent=Msa1126470-mRNA-1 |
| chr7_3 | five_prime_UTR | 78024730 | 78024820 | 78024730 | ID=Msa1126470-mRNA-1:five_prime_utr;Parent=Msa1126470-mRNA-1 |
| chr7_3 | CDS | 78024592 | 78024729 | 78024592 | ID=Msa1126470-mRNA-1:cds;Parent=Msa1126470-mRNA-1 |
| chr7_3 | CDS | 78022677 | 78022718 | 78022677 | ID=Msa1126470-mRNA-1:cds;Parent=Msa1126470-mRNA-1 |
| chr7_3 | three_prime_UTR | 78022266 | 78022676 | 78022266 | ID=Msa1126470-mRNA-1:three_prime_utr;Parent=Msa1126470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
