Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740210 | XP_003617079.1 | 96.915 | 389 | 12 | 0 | 1 | 389 | 3 | 391 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740210 | sp|Q9FH04|ADHL7_ARATH | 69.666 | 389 | 116 | 2 | 1 | 387 | 1 | 389 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740210 | G7K2X3 | 96.915 | 389 | 12 | 0 | 1 | 389 | 3 | 391 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0740210 | 0.848564 | 5.656638e-60 | -8.615850e-47 |
| Msa0035400 | Msa0740210 | 0.807560 | 4.762369e-50 | -8.615850e-47 |
| Msa0044180 | Msa0740210 | 0.815074 | 1.113548e-51 | -8.615850e-47 |
| Msa0064550 | Msa0740210 | 0.843414 | 1.421971e-58 | -8.615850e-47 |
| Msa0067150 | Msa0740210 | 0.805852 | 1.092839e-49 | -8.615850e-47 |
| Msa0092960 | Msa0740210 | 0.800696 | 1.276989e-48 | -8.615850e-47 |
| Msa0108070 | Msa0740210 | 0.828563 | 8.384783e-55 | -8.615850e-47 |
| Msa0109490 | Msa0740210 | 0.825054 | 5.776301e-54 | -8.615850e-47 |
| Msa0604880 | Msa0740210 | 0.823793 | 1.144044e-53 | -8.615850e-47 |
| Msa0605250 | Msa0740210 | 0.819218 | 1.303766e-52 | -8.615850e-47 |
| Msa0627050 | Msa0740210 | 0.816705 | 4.818381e-52 | -8.615850e-47 |
| Msa0646190 | Msa0740210 | 0.830871 | 2.300026e-55 | -8.615850e-47 |
| Msa0659300 | Msa0740210 | -0.814333 | 1.625544e-51 | -8.615850e-47 |
| Msa0704220 | Msa0740210 | 0.807486 | 4.938546e-50 | -8.615850e-47 |
| Msa0709660 | Msa0740210 | 0.826280 | 2.957922e-54 | -8.615850e-47 |
| Msa0740210 | Msa0769830 | 0.816412 | 5.604505e-52 | -8.615850e-47 |
| Msa0740210 | Msa0781390 | 0.969601 | 2.311195e-130 | -8.615850e-47 |
| Msa0740210 | Msa0806720 | 0.802241 | 6.159976e-49 | -8.615850e-47 |
| Msa0740210 | Msa0806760 | 0.801833 | 7.472940e-49 | -8.615850e-47 |
| Msa0740210 | Msa0809300 | 0.801821 | 7.515463e-49 | -8.615850e-47 |
| Msa0740210 | Msa0820520 | 0.910801 | 1.246890e-82 | -8.615850e-47 |
| Msa0740210 | Msa0848760 | 0.807764 | 4.310562e-50 | -8.615850e-47 |
| Msa0740210 | Msa0860920 | 0.974119 | 1.346532e-137 | -8.615850e-47 |
| Msa0740210 | Msa0945960 | 0.800669 | 1.293357e-48 | -8.615850e-47 |
| Msa0740210 | Msa0968780 | 0.819835 | 9.426833e-53 | -8.615850e-47 |
| Msa0740210 | Msa0984000 | 0.831612 | 1.512279e-55 | -8.615850e-47 |
| Msa0740210 | Msa1079480 | 0.806619 | 7.531754e-50 | -8.615850e-47 |
| Msa0740210 | Msa1082150 | 0.800125 | 1.669028e-48 | -8.615850e-47 |
| Msa0740210 | Msa1137940 | 0.846442 | 2.166380e-59 | -8.615850e-47 |
| Msa0740210 | Msa1144700 | 0.832140 | 1.120093e-55 | -8.615850e-47 |
| Msa0740210 | Msa1144730 | 0.836048 | 1.175412e-56 | -8.615850e-47 |
| Msa0740210 | Msa1158090 | 0.807087 | 6.000062e-50 | -8.615850e-47 |
| Msa0740210 | Msa1177240 | 0.822369 | 2.457431e-53 | -8.615850e-47 |
| Msa0740210 | Msa1180050 | 0.833526 | 5.070240e-56 | -8.615850e-47 |
| Msa0740210 | Msa1198720 | 0.805593 | 1.238569e-49 | -8.615850e-47 |
| Msa0740210 | Msa1212760 | 0.818026 | 2.429450e-52 | -8.615850e-47 |
| Msa0740210 | Msa1232270 | 0.855439 | 6.304939e-62 | -8.615850e-47 |
| Msa0740210 | Msa1252300 | 0.801798 | 7.594773e-49 | -8.615850e-47 |
| Msa0740210 | Msa1270770 | 0.832735 | 7.979737e-56 | -8.615850e-47 |
| Msa0740210 | Msa1281270 | 0.818910 | 1.531494e-52 | -8.615850e-47 |
| Msa0740210 | Msa1313050 | 0.832921 | 7.171027e-56 | -8.615850e-47 |
| Msa0740210 | Msa1317030 | 0.816886 | 4.388536e-52 | -8.615850e-47 |
| Msa0740210 | Msa1320380 | 0.832706 | 8.113686e-56 | -8.615850e-47 |
| Msa0740210 | Msa1349810 | 0.815900 | 7.294158e-52 | -8.615850e-47 |
| Msa0740210 | Msa1354090 | 0.850344 | 1.804793e-60 | -8.615850e-47 |
| Msa0740210 | Msa1358340 | 0.816299 | 5.939230e-52 | -8.615850e-47 |
| Msa0740210 | Msa1359890 | 0.828422 | 9.070214e-55 | -8.615850e-47 |
| Msa0740210 | Msa1394900 | 0.839055 | 1.992320e-57 | -8.615850e-47 |
| Msa0740210 | Msa1434660 | 0.836571 | 8.657070e-57 | -8.615850e-47 |
| Msa0740210 | Msa1459540 | 0.806634 | 7.479173e-50 | -8.615850e-47 |
| Msa0740210 | Msa1466350 | 0.802523 | 5.388392e-49 | -8.615850e-47 |
| Msa0140290 | Msa0740210 | 0.809410 | 1.918113e-50 | -8.615850e-47 |
| Msa0154200 | Msa0740210 | 0.811075 | 8.394258e-51 | -8.615850e-47 |
| Msa0154220 | Msa0740210 | 0.844877 | 5.756740e-59 | -8.615850e-47 |
| Msa0154270 | Msa0740210 | 0.885755 | 6.187016e-72 | -8.615850e-47 |
| Msa0155610 | Msa0740210 | 0.830130 | 3.491349e-55 | -8.615850e-47 |
| Msa0183560 | Msa0740210 | 0.805911 | 1.062203e-49 | -8.615850e-47 |
| Msa0197030 | Msa0740210 | 0.851714 | 7.412148e-61 | -8.615850e-47 |
| Msa0218530 | Msa0740210 | -0.809522 | 1.815501e-50 | -8.615850e-47 |
| Msa0218650 | Msa0740210 | -0.812444 | 4.226479e-51 | -8.615850e-47 |
| Msa0380650 | Msa0740210 | 0.808021 | 3.799773e-50 | -8.615850e-47 |
| Msa0382590 | Msa0740210 | 0.812670 | 3.772480e-51 | -8.615850e-47 |
| Msa0392050 | Msa0740210 | 0.835419 | 1.696174e-56 | -8.615850e-47 |
| Msa0392540 | Msa0740210 | 0.812903 | 3.354782e-51 | -8.615850e-47 |
| Msa0401340 | Msa0740210 | 0.827473 | 1.534491e-54 | -8.615850e-47 |
| Msa0412190 | Msa0740210 | 0.865451 | 5.848113e-65 | -8.615850e-47 |
| Msa0430290 | Msa0740210 | 0.811664 | 6.251602e-51 | -8.615850e-47 |
| Msa0432720 | Msa0740210 | 0.828379 | 9.288879e-55 | -8.615850e-47 |
| Msa0435010 | Msa0740210 | 0.841637 | 4.211293e-58 | -8.615850e-47 |
| Msa0440310 | Msa0740210 | 0.815642 | 8.327970e-52 | -8.615850e-47 |
| Msa0448120 | Msa0740210 | 0.818228 | 2.186484e-52 | -8.615850e-47 |
| Msa0456760 | Msa0740210 | 0.802442 | 5.599940e-49 | -8.615850e-47 |
| Msa0465800 | Msa0740210 | 0.803630 | 3.180615e-49 | -8.615850e-47 |
| Msa0469950 | Msa0740210 | 0.833690 | 4.613973e-56 | -8.615850e-47 |
| Msa0472740 | Msa0740210 | 0.808040 | 3.764627e-50 | -8.615850e-47 |
| Msa0476780 | Msa0740210 | 0.805675 | 1.190536e-49 | -8.615850e-47 |
| Msa0479030 | Msa0740210 | 0.805762 | 1.141195e-49 | -8.615850e-47 |
| Msa0479100 | Msa0740210 | 0.840132 | 1.045549e-57 | -8.615850e-47 |
| Msa0481490 | Msa0740210 | 0.817448 | 3.280139e-52 | -8.615850e-47 |
| Msa0238860 | Msa0740210 | 0.813829 | 2.100036e-51 | -8.615850e-47 |
| Msa0265580 | Msa0740210 | 0.831705 | 1.434257e-55 | -8.615850e-47 |
| Msa0276590 | Msa0740210 | 0.821871 | 3.206787e-53 | -8.615850e-47 |
| Msa0303440 | Msa0740210 | 0.824436 | 8.080231e-54 | -8.615850e-47 |
| Msa0344680 | Msa0740210 | 0.835786 | 1.370147e-56 | -8.615850e-47 |
| Msa0344710 | Msa0740210 | 0.803141 | 4.016596e-49 | -8.615850e-47 |
| Msa0346790 | Msa0740210 | 0.804647 | 1.953902e-49 | -8.615850e-47 |
| Msa0354390 | Msa0740210 | 0.803905 | 2.788840e-49 | -8.615850e-47 |
| Msa0358290 | Msa0740210 | 0.822554 | 2.226082e-53 | -8.615850e-47 |
| Msa0487490 | Msa0740210 | 0.825018 | 5.890474e-54 | -8.615850e-47 |
| Msa0525270 | Msa0740210 | 0.841284 | 5.216678e-58 | -8.615850e-47 |
| Msa0525280 | Msa0740210 | 0.842248 | 2.903923e-58 | -8.615850e-47 |
| Msa0549540 | Msa0740210 | 0.842520 | 2.460259e-58 | -8.615850e-47 |
| Msa0549760 | Msa0740210 | 0.807463 | 4.993690e-50 | -8.615850e-47 |
| Msa0583740 | Msa0740210 | 0.829092 | 6.246513e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740210 | MtrunA17_Chr5g0440521 | 96.915 | 389 | 12 | 0 | 1 | 389 | 3 | 391 | 0.0 | 768 |
| Msa0740210 | MtrunA17_Chr3g0118441 | 76.104 | 385 | 91 | 1 | 6 | 389 | 2 | 386 | 0.0 | 620 |
| Msa0740210 | MtrunA17_Chr3g0132351 | 61.640 | 378 | 141 | 3 | 14 | 388 | 14 | 390 | 1.65e-164 | 466 |
| Msa0740210 | MtrunA17_Chr3g0118431 | 80.074 | 271 | 54 | 0 | 109 | 379 | 20 | 290 | 2.84e-163 | 459 |
| Msa0740210 | MtrunA17_Chr1g0183131 | 51.070 | 374 | 181 | 2 | 14 | 387 | 6 | 377 | 8.78e-134 | 388 |
| Msa0740210 | MtrunA17_Chr6g0478081 | 49.738 | 382 | 186 | 4 | 8 | 389 | 2 | 377 | 8.35e-129 | 375 |
| Msa0740210 | MtrunA17_Chr7g0262421 | 49.340 | 379 | 189 | 3 | 7 | 385 | 2 | 377 | 8.52e-128 | 372 |
| Msa0740210 | MtrunA17_Chr3g0125911 | 45.288 | 382 | 205 | 4 | 9 | 389 | 2 | 380 | 5.14e-121 | 355 |
| Msa0740210 | MtrunA17_Chr3g0125961 | 45.600 | 375 | 200 | 4 | 14 | 387 | 7 | 378 | 4.63e-120 | 353 |
| Msa0740210 | MtrunA17_Chr3g0125941 | 45.358 | 377 | 202 | 4 | 14 | 389 | 8 | 381 | 4.36e-119 | 350 |
| Msa0740210 | MtrunA17_Chr7g0242291 | 47.619 | 378 | 192 | 5 | 14 | 387 | 18 | 393 | 2.88e-116 | 343 |
| Msa0740210 | MtrunA17_Chr4g0021211 | 44.063 | 379 | 204 | 5 | 10 | 387 | 27 | 398 | 7.50e-105 | 315 |
| Msa0740210 | MtrunA17_Chr5g0419681 | 43.947 | 380 | 204 | 7 | 10 | 387 | 2 | 374 | 8.60e-104 | 311 |
| Msa0740210 | MtrunA17_Chr7g0242301 | 43.733 | 359 | 165 | 4 | 32 | 387 | 1 | 325 | 2.10e-94 | 285 |
| Msa0740210 | MtrunA17_Chr8g0385221 | 30.709 | 381 | 245 | 12 | 15 | 385 | 51 | 422 | 4.03e-38 | 142 |
| Msa0740210 | MtrunA17_Chr6g0474141 | 24.928 | 345 | 220 | 11 | 42 | 378 | 39 | 352 | 1.57e-20 | 92.0 |
| Msa0740210 | MtrunA17_Chr5g0411911 | 24.929 | 353 | 216 | 12 | 43 | 385 | 40 | 353 | 5.66e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740210 | AT5G42250.1 | 69.666 | 389 | 116 | 2 | 1 | 387 | 1 | 389 | 0.0 | 573 |
| Msa0740210 | AT1G22430.2 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 1.34e-169 | 479 |
| Msa0740210 | AT1G22430.1 | 59.640 | 389 | 153 | 4 | 3 | 389 | 2 | 388 | 1.34e-169 | 479 |
| Msa0740210 | AT4G22110.2 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 9.21e-169 | 477 |
| Msa0740210 | AT4G22110.1 | 60.614 | 391 | 150 | 4 | 1 | 389 | 1 | 389 | 9.21e-169 | 477 |
| Msa0740210 | AT1G22440.1 | 60.519 | 385 | 148 | 4 | 7 | 389 | 4 | 386 | 3.68e-167 | 473 |
| Msa0740210 | AT5G43940.1 | 50.806 | 372 | 181 | 2 | 14 | 385 | 6 | 375 | 5.73e-135 | 391 |
| Msa0740210 | AT5G43940.2 | 50.273 | 366 | 180 | 2 | 20 | 385 | 24 | 387 | 2.37e-131 | 382 |
| Msa0740210 | AT5G24760.1 | 49.482 | 386 | 187 | 5 | 6 | 389 | 2 | 381 | 2.42e-130 | 379 |
| Msa0740210 | AT1G22430.3 | 61.017 | 295 | 112 | 3 | 3 | 295 | 2 | 295 | 3.01e-127 | 369 |
| Msa0740210 | AT1G64710.1 | 48.533 | 375 | 188 | 5 | 16 | 387 | 8 | 380 | 3.80e-124 | 363 |
| Msa0740210 | AT5G24760.2 | 49.721 | 358 | 174 | 4 | 32 | 389 | 1 | 352 | 4.89e-122 | 357 |
| Msa0740210 | AT5G24760.3 | 49.721 | 358 | 174 | 4 | 32 | 389 | 1 | 352 | 4.89e-122 | 357 |
| Msa0740210 | AT1G77120.1 | 46.791 | 374 | 197 | 2 | 14 | 387 | 6 | 377 | 5.21e-122 | 358 |
| Msa0740210 | AT1G32780.1 | 48.177 | 384 | 187 | 6 | 16 | 389 | 9 | 390 | 7.51e-118 | 348 |
| Msa0740210 | AT1G64710.2 | 47.911 | 359 | 182 | 5 | 32 | 387 | 1 | 357 | 2.11e-117 | 345 |
| Msa0740210 | AT1G22430.4 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 8.88e-112 | 329 |
| Msa0740210 | AT1G22430.5 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 8.88e-112 | 329 |
| Msa0740210 | AT4G22110.3 | 62.172 | 267 | 98 | 3 | 1 | 265 | 1 | 266 | 3.01e-111 | 327 |
| Msa0740210 | AT1G64710.3 | 47.403 | 308 | 158 | 4 | 82 | 387 | 6 | 311 | 4.36e-98 | 295 |
| Msa0740210 | AT5G24760.4 | 49.259 | 270 | 134 | 3 | 120 | 389 | 1 | 267 | 2.60e-86 | 263 |
| Msa0740210 | AT5G63620.1 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 3.30e-37 | 140 |
| Msa0740210 | AT5G63620.2 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 4.75e-37 | 139 |
| Msa0740210 | AT5G63620.3 | 29.461 | 241 | 163 | 3 | 19 | 253 | 57 | 296 | 1.56e-26 | 108 |
| Msa0740210 | AT5G51970.1 | 24.370 | 357 | 220 | 12 | 36 | 378 | 34 | 354 | 1.07e-18 | 87.0 |
| Msa0740210 | AT5G51970.2 | 24.370 | 357 | 220 | 12 | 36 | 378 | 34 | 354 | 1.07e-18 | 87.0 |
| Msa0740210 | AT4G37980.1 | 24.545 | 330 | 212 | 11 | 43 | 364 | 34 | 334 | 1.46e-11 | 65.9 |
Find 89 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTTCTAAATAAAT+AGG | 0.158294 | 5_1:+59046671 | None:intergenic |
| ACACACACCTTTACATCTTA+TGG | 0.160696 | 5_1:+59046434 | None:intergenic |
| ACTCTTATGGGGTCTATATT+TGG | 0.200744 | 5_1:-59043669 | Msa0740210:CDS |
| GTCACAGTGATATCATATTT+TGG | 0.203880 | 5_1:-59046078 | Msa0740210:CDS |
| TTATTATCAGGAACTCAATT+TGG | 0.208168 | 5_1:-59043439 | Msa0740210:intron |
| TGTGGAGCAACTAGGATTAT+AGG | 0.276027 | 5_1:-59044478 | Msa0740210:CDS |
| CTTTATTCAGCGAAGAAGTT+TGG | 0.298247 | 5_1:-59044303 | Msa0740210:intron |
| CACACACCTTTACATCTTAT+GGG | 0.302890 | 5_1:+59046435 | None:intergenic |
| ACTAGATTCACTGATCTAAA+TGG | 0.304247 | 5_1:-59045186 | Msa0740210:CDS |
| CTTTGTAAATCCTGGAGAAT+TGG | 0.307283 | 5_1:-59044271 | Msa0740210:CDS |
| AGTATCCCTATTTATTTAGA+AGG | 0.308290 | 5_1:-59046677 | Msa0740210:intron |
| CCTTCACTTGTTGCTGCAGC+AGG | 0.313951 | 5_1:+59046465 | None:intergenic |
| GCCCTGTTGGGAGGAATTGC+TGG | 0.324195 | 5_1:+59045081 | None:intergenic |
| CATTGTTATCCCAATCTTCA+TGG | 0.329697 | 5_1:-59045307 | Msa0740210:CDS |
| CTTTACATCTTATGGGTTGT+TGG | 0.330117 | 5_1:+59046442 | None:intergenic |
| TAAGAGTCTTCCCTTGAAAA+AGG | 0.339190 | 5_1:+59043685 | None:intergenic |
| TTTCAAGGGAAGACTCTTAT+GGG | 0.369580 | 5_1:-59043681 | Msa0740210:CDS |
| AATGTCTTCGGTGTGTGATT+TGG | 0.385429 | 5_1:-59043347 | Msa0740210:CDS |
| ATCCAGCAATTCCTCCCAAC+AGG | 0.388742 | 5_1:-59045083 | Msa0740210:CDS |
| CTCAGTTGTGGTGTATCAAC+AGG | 0.395594 | 5_1:-59045051 | Msa0740210:intron |
| TCACAATCAGCCATGAAGAT+TGG | 0.401526 | 5_1:+59045297 | None:intergenic |
| TAATACCTTCTAAATAAATA+GGG | 0.402544 | 5_1:+59046672 | None:intergenic |
| GAAAACAGCAAATGTTGAAC+CGG | 0.406203 | 5_1:-59044923 | Msa0740210:CDS |
| TTACATATTGACATAATTCA+AGG | 0.418523 | 5_1:+59043283 | None:intergenic |
| CACAATCAGCCATGAAGATT+GGG | 0.418681 | 5_1:+59045298 | None:intergenic |
| GAAGTAAGAGAAGTTACAAA+AGG | 0.440085 | 5_1:-59045333 | Msa0740210:CDS |
| GCTGAAGGAGCTAGACTTTG+TGG | 0.441563 | 5_1:-59044496 | Msa0740210:CDS |
| TGGATCAATCTTGAGTAGAT+TGG | 0.449026 | 5_1:+59045101 | None:intergenic |
| GTCACAGACTTTGTAAATCC+TGG | 0.452717 | 5_1:-59044279 | Msa0740210:CDS |
| GGAAAACAAATCTGTGAGTC+AGG | 0.454117 | 5_1:-59044250 | Msa0740210:CDS |
| ATCCAAGGTTTAATATCAAA+AGG | 0.456805 | 5_1:+59045225 | None:intergenic |
| AACTAGAGACAAATATGAAA+TGG | 0.460302 | 5_1:+59045151 | None:intergenic |
| CTGAGGAGGCATGCCCTGTT+GGG | 0.462513 | 5_1:+59045069 | None:intergenic |
| CTAGCTTCACGTGGCATTGG+TGG | 0.466521 | 5_1:+59046127 | None:intergenic |
| TGACTAAAGGAGAATGTCTT+CGG | 0.469794 | 5_1:-59043359 | Msa0740210:CDS |
| TGCAGCAGGTTTATCTTCCA+TGG | 0.473298 | 5_1:+59046479 | None:intergenic |
| TATTGGGTCATGAGGCAATT+GGG | 0.475842 | 5_1:-59045889 | Msa0740210:intron |
| TCAATTATCAGTGGTTCACC+TGG | 0.479329 | 5_1:+59046166 | None:intergenic |
| ATGTGTTGGTATGGCATCAT+TGG | 0.482347 | 5_1:-59044184 | Msa0740210:CDS |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 5_1:-59044486 | Msa0740210:CDS |
| GATAATTGAGGAGATCTTTG+TGG | 0.495474 | 5_1:-59046152 | Msa0740210:CDS |
| TTGATACTCAACTTAGATCC+TGG | 0.495669 | 5_1:+59043720 | None:intergenic |
| ATATTGGGTCATGAGGCAAT+TGG | 0.499281 | 5_1:-59045890 | Msa0740210:CDS |
| ATCCTAGCTTCACGTGGCAT+TGG | 0.500201 | 5_1:+59046124 | None:intergenic |
| TTGCTTTGAATGTGTTGGTA+TGG | 0.503086 | 5_1:-59044193 | Msa0740210:CDS |
| ACTGAGGAGGCATGCCCTGT+TGG | 0.511132 | 5_1:+59045068 | None:intergenic |
| AAGAATGGGTACATCAGACT+TGG | 0.513039 | 5_1:+59043635 | None:intergenic |
| CTTATGGGGTCTATATTTGG+AGG | 0.514741 | 5_1:-59043666 | Msa0740210:CDS |
| TCCTAGGATATTGGGTCATG+AGG | 0.516971 | 5_1:-59045897 | Msa0740210:CDS |
| CAACAACCCATAAGATGTAA+AGG | 0.518832 | 5_1:-59046441 | Msa0740210:intron |
| GCCTCATGACCCAATATCCT+AGG | 0.519429 | 5_1:+59045896 | None:intergenic |
| AGCATATGCTTCATGTAGAA+AGG | 0.522535 | 5_1:-59044154 | Msa0740210:intron |
| TCTTCCATGGCGATGAGTCA+AGG | 0.534652 | 5_1:+59046492 | None:intergenic |
| GATTATTGCTTTGAATGTGT+TGG | 0.539967 | 5_1:-59044198 | Msa0740210:CDS |
| AGGGCATGCCTCCTCAGTTG+TGG | 0.551435 | 5_1:-59045063 | Msa0740210:CDS |
| ATGTTAGGAGTGGACAAGCC+AGG | 0.552820 | 5_1:-59043738 | Msa0740210:CDS |
| ATTGTTTCCTAGGTGGCTGA+AGG | 0.554628 | 5_1:-59044511 | Msa0740210:intron |
| CACCAATGCCACGTGAAGCT+AGG | 0.554714 | 5_1:-59046126 | Msa0740210:CDS |
| ACTCGGATGTATTGGATTAG+CGG | 0.554730 | 5_1:-59044878 | Msa0740210:intron |
| TACATATTGACATAATTCAA+GGG | 0.556010 | 5_1:+59043284 | None:intergenic |
| GCTGCGGTGTGTCGCAAACC+AGG | 0.561296 | 5_1:-59046184 | Msa0740210:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 5_1:-59044228 | Msa0740210:CDS |
| TTTAGTGTGGTGGAAAGTGT+TGG | 0.568604 | 5_1:-59045360 | Msa0740210:intron |
| CTTCCATGGCGATGAGTCAA+GGG | 0.578363 | 5_1:+59046493 | None:intergenic |
| AAAACAGCAAATGTTGAACC+GGG | 0.583487 | 5_1:-59044922 | Msa0740210:CDS |
| AGGAGGCATGCCCTGTTGGG+AGG | 0.588882 | 5_1:+59045072 | None:intergenic |
| CAAAAGGAAACTTTGAACAA+AGG | 0.590036 | 5_1:+59045241 | None:intergenic |
| CCTGCTGCAGCAACAAGTGA+AGG | 0.594994 | 5_1:-59046465 | Msa0740210:CDS |
| AGAATGGGTACATCAGACTT+GGG | 0.595366 | 5_1:+59043636 | None:intergenic |
| TCTTCGGTGTGTGATTTGGA+TGG | 0.597231 | 5_1:-59043343 | Msa0740210:CDS |
| AGCAACTAGGATTATAGGTG+TGG | 0.598387 | 5_1:-59044473 | Msa0740210:CDS |
| TTCAAGGGAAGACTCTTATG+GGG | 0.612341 | 5_1:-59043680 | Msa0740210:CDS |
| AGGTGAACCACTGATAATTG+AGG | 0.618418 | 5_1:-59046164 | Msa0740210:CDS |
| TGTGGTGGAAAGTGTTGGAG+AGG | 0.623425 | 5_1:-59045355 | Msa0740210:CDS |
| GATATCACTGTGACAAAGAG+AGG | 0.624489 | 5_1:+59046087 | None:intergenic |
| TCCAGCAATTCCTCCCAACA+GGG | 0.631418 | 5_1:-59045082 | Msa0740210:CDS |
| CCTCCCTTGACTCATCGCCA+TGG | 0.635431 | 5_1:-59046496 | Msa0740210:exon |
| AAAATAGCTACTGTCGACCC+CGG | 0.636859 | 5_1:+59044904 | None:intergenic |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 5_1:-59044225 | Msa0740210:CDS |
| TTGATACACCACAACTGAGG+AGG | 0.646650 | 5_1:+59045055 | None:intergenic |
| ATTTAGATCAGTGAATCTAG+TGG | 0.650022 | 5_1:+59045188 | None:intergenic |
| CCATGGCGATGAGTCAAGGG+AGG | 0.650108 | 5_1:+59046496 | None:intergenic |
| GTATCATATCTAAGCATCCA+AGG | 0.653021 | 5_1:+59045210 | None:intergenic |
| AAGATCTCCTCAATTATCAG+TGG | 0.664996 | 5_1:+59046157 | None:intergenic |
| AGATCAAATATAGAAGTCAG+AGG | 0.675333 | 5_1:+59043246 | None:intergenic |
| CATGGCGATGAGTCAAGGGA+GGG | 0.678909 | 5_1:+59046497 | None:intergenic |
| ATACGAATCCTAGCTTCACG+TGG | 0.710856 | 5_1:+59046118 | None:intergenic |
| CTGTTGATACACCACAACTG+AGG | 0.718420 | 5_1:+59045052 | None:intergenic |
| AAACAGCAAATGTTGAACCG+GGG | 0.725303 | 5_1:-59044921 | Msa0740210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTTTTTTTTTTTA+AGG | + | chr5_1:59043699-59043718 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTACTTTTGA+AGG | - | chr5_1:59044022-59044041 | Msa0740210:intron | 10.0% |
| !!! | TTAATTTTTTGACTTTTTTT+TGG | - | chr5_1:59044273-59044292 | Msa0740210:CDS | 10.0% |
| !! | AACAAAAGATAAAATATAAT+TGG | + | chr5_1:59045306-59045325 | None:intergenic | 10.0% |
| !!! | AAAAATCAAAGTATCTTTTT+AGG | - | chr5_1:59043229-59043248 | Msa0740210:three_prime_UTR | 15.0% |
| !! | TAATACCTTCTAAATAAATA+GGG | + | chr5_1:59043289-59043308 | None:intergenic | 15.0% |
| !! | ATAATACCTTCTAAATAAAT+AGG | + | chr5_1:59043290-59043309 | None:intergenic | 15.0% |
| !!! | TAATATTTTTGATAGTGAAA+GGG | + | chr5_1:59043358-59043377 | None:intergenic | 15.0% |
| !!! | ATAATATTTTTGATAGTGAA+AGG | + | chr5_1:59043359-59043378 | None:intergenic | 15.0% |
| !! | TATTATCAAATTAAATTGCA+TGG | + | chr5_1:59043621-59043640 | None:intergenic | 15.0% |
| !! | TAAATTAATATCACGTTAAA+TGG | + | chr5_1:59044411-59044430 | None:intergenic | 15.0% |
| !! | ATTTAATGTTTATATGTTCT+TGG | - | chr5_1:59044426-59044445 | Msa0740210:intron | 15.0% |
| !!! | TTTATCAAACATCAATTTTT+AGG | - | chr5_1:59044997-59045016 | Msa0740210:intron | 15.0% |
| !!! | TTATCAAACATCAATTTTTA+GGG | - | chr5_1:59044998-59045017 | Msa0740210:intron | 15.0% |
| !! | AATCAAAAAAAGAAATTACA+TGG | + | chr5_1:59046373-59046392 | None:intergenic | 15.0% |
| !!! | AAAAGATATTTTGGAGATTT+TGG | + | chr5_1:59043392-59043411 | None:intergenic | 20.0% |
| !!! | ATGTAACTGAAAAGATATTT+TGG | + | chr5_1:59043401-59043420 | None:intergenic | 20.0% |
| !! | AAAAAACACTATGAATGTAA+TGG | - | chr5_1:59043726-59043745 | Msa0740210:CDS | 20.0% |
| !! | ATATTTCTCATTTCCTAATT+AGG | - | chr5_1:59044142-59044161 | Msa0740210:intron | 20.0% |
| !! | ATTAGTTCAAATAATGAAAG+TGG | + | chr5_1:59044368-59044387 | None:intergenic | 20.0% |
| !!! | AATTTTTATGTGATTTAGTG+TGG | - | chr5_1:59044585-59044604 | Msa0740210:intron | 20.0% |
| !!! | TATCAAACATCAATTTTTAG+GGG | - | chr5_1:59044999-59045018 | Msa0740210:intron | 20.0% |
| !!! | TTACCAATTTCAAATTTTTC+TGG | + | chr5_1:59045519-59045538 | None:intergenic | 20.0% |
| !!! | CTTTATTTTAACCATGTTAT+TGG | - | chr5_1:59045880-59045899 | Msa0740210:intron | 20.0% |
| !! | GTGCAATATTCAATATTATT+TGG | - | chr5_1:59046122-59046141 | Msa0740210:CDS | 20.0% |
| !!! | TAGTAATGTCAACAAATTTT+TGG | - | chr5_1:59046468-59046487 | Msa0740210:CDS | 20.0% |
| !!! | CAAATTTTTGGACTTTTTAT+TGG | - | chr5_1:59046480-59046499 | Msa0740210:CDS | 20.0% |
| !!! | TTTTTTCTCCAATTATTATC+AGG | - | chr5_1:59046507-59046526 | Msa0740210:intron | 20.0% |
| !! | TACATATTGACATAATTCAA+GGG | + | chr5_1:59046677-59046696 | None:intergenic | 20.0% |
| !! | TTACATATTGACATAATTCA+AGG | + | chr5_1:59046678-59046697 | None:intergenic | 20.0% |
| ! | AGTATCCCTATTTATTTAGA+AGG | - | chr5_1:59043281-59043300 | Msa0740210:three_prime_UTR | 25.0% |
| ! | GTTATGTTGTAATGAATCAT+GGG | + | chr5_1:59043558-59043577 | None:intergenic | 25.0% |
| ! | AGTTATGTTGTAATGAATCA+TGG | + | chr5_1:59043559-59043578 | None:intergenic | 25.0% |
| !!! | TATCATATTTTGGAAAATGC+AGG | - | chr5_1:59043890-59043909 | Msa0740210:intron | 25.0% |
| ! | AATATCACGTTAAATGGAAT+TGG | + | chr5_1:59044405-59044424 | None:intergenic | 25.0% |
| !!! | TCAAAAATTGGTAATGACAA+GGG | + | chr5_1:59044455-59044474 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTGGATTGTTAAC+CGG | + | chr5_1:59044493-59044512 | None:intergenic | 25.0% |
| ! | ACAATCCAAACTAAATATGT+TGG | - | chr5_1:59044497-59044516 | Msa0740210:CDS | 25.0% |
| !! | TTCCTTTTGATATTAAACCT+TGG | - | chr5_1:59044731-59044750 | Msa0740210:intron | 25.0% |
| ! | ATCCAAGGTTTAATATCAAA+AGG | + | chr5_1:59044736-59044755 | None:intergenic | 25.0% |
| ! | AACTAGAGACAAATATGAAA+TGG | + | chr5_1:59044810-59044829 | None:intergenic | 25.0% |
| ! | CAAAACGAAAACATAAACTA+AGG | + | chr5_1:59045116-59045135 | None:intergenic | 25.0% |
| !! | TATGTTTTCGTTTTGTAGTT+TGG | - | chr5_1:59045121-59045140 | Msa0740210:CDS | 25.0% |
| !! | ATGTTTTCGTTTTGTAGTTT+GGG | - | chr5_1:59045122-59045141 | Msa0740210:CDS | 25.0% |
| ! | TTTAGCATACAAAACTACAA+AGG | + | chr5_1:59045410-59045429 | None:intergenic | 25.0% |
| ! | TTGTAATTGAATTGTTTCCT+AGG | - | chr5_1:59045437-59045456 | Msa0740210:intron | 25.0% |
| !! | AAGCCAGAAAAATTTGAAAT+TGG | - | chr5_1:59045513-59045532 | Msa0740210:intron | 25.0% |
| ! | ATTGTGGATGAAAAAAAATG+TGG | + | chr5_1:59045996-59046015 | None:intergenic | 25.0% |
| !!! | AAAATTGGTGTTTTGATTTC+AGG | - | chr5_1:59046180-59046199 | Msa0740210:CDS | 25.0% |
| !!! | AAATTGGTGTTTTGATTTCA+GGG | - | chr5_1:59046181-59046200 | Msa0740210:CDS | 25.0% |
| ! | AAAAACAATTATGTTAGGAG+TGG | - | chr5_1:59046210-59046229 | Msa0740210:intron | 25.0% |
| ! | ATGTAGCGTTTAAAAAGAAT+GGG | + | chr5_1:59046340-59046359 | None:intergenic | 25.0% |
| ! | ATAAAATGTTACCAAAAGAG+AGG | + | chr5_1:59046416-59046435 | None:intergenic | 25.0% |
| ! | ATTGAGTTCCTGATAATAAT+TGG | + | chr5_1:59046518-59046537 | None:intergenic | 25.0% |
| ! | TTATTATCAGGAACTCAATT+TGG | - | chr5_1:59046519-59046538 | Msa0740210:intron | 25.0% |
| !!! | GCTTTTGATTTATTGACTAA+AGG | - | chr5_1:59046586-59046605 | Msa0740210:intron | 25.0% |
| !! | TTTTGGAGATTTTGGAGAAA+GGG | + | chr5_1:59043384-59043403 | None:intergenic | 30.0% |
| !! | ATTTTGGAGATTTTGGAGAA+AGG | + | chr5_1:59043385-59043404 | None:intergenic | 30.0% |
| ! | ATTTGCAAATTTTGTAGCTG+CGG | - | chr5_1:59043758-59043777 | Msa0740210:CDS | 30.0% |
| ! | GTCACAGTGATATCATATTT+TGG | - | chr5_1:59043880-59043899 | Msa0740210:intron | 30.0% |
| AATATCCTAGGAAAAATTGC+AGG | + | chr5_1:59044053-59044072 | None:intergenic | 30.0% | |
| ! | TGCAATTTTTCCTAGGATAT+TGG | - | chr5_1:59044052-59044071 | Msa0740210:intron | 30.0% |
| ! | GCAATTTTTCCTAGGATATT+GGG | - | chr5_1:59044053-59044072 | Msa0740210:intron | 30.0% |
| CTCATTTCCTAATTAGGTAA+AGG | - | chr5_1:59044148-59044167 | Msa0740210:intron | 30.0% | |
| TTTCCTAATTAGGTAAAGGA+AGG | - | chr5_1:59044152-59044171 | Msa0740210:intron | 30.0% | |
| !! | CTCAAAAATTGGTAATGACA+AGG | + | chr5_1:59044456-59044475 | None:intergenic | 30.0% |
| !! | CATTACCAATTTTTGAGAGT+CGG | - | chr5_1:59044459-59044478 | Msa0740210:CDS | 30.0% |
| TGAGACCAACATATTTAGTT+TGG | + | chr5_1:59044505-59044524 | None:intergenic | 30.0% | |
| ! | TTTTATGTGATTTAGTGTGG+TGG | - | chr5_1:59044588-59044607 | Msa0740210:intron | 30.0% |
| GAAGTAAGAGAAGTTACAAA+AGG | - | chr5_1:59044625-59044644 | Msa0740210:intron | 30.0% | |
| CAAAAGGAAACTTTGAACAA+AGG | + | chr5_1:59044720-59044739 | None:intergenic | 30.0% | |
| ATTTAGATCAGTGAATCTAG+TGG | + | chr5_1:59044773-59044792 | None:intergenic | 30.0% | |
| ACTAGATTCACTGATCTAAA+TGG | - | chr5_1:59044772-59044791 | Msa0740210:intron | 30.0% | |
| !!! | TAGTTTTAGTGAGTATACTG+TGG | - | chr5_1:59044825-59044844 | Msa0740210:intron | 30.0% |
| !! | AAACATCAATTTTTAGGGGT+AGG | - | chr5_1:59045003-59045022 | Msa0740210:intron | 30.0% |
| GTAGATAAGCTCAAATAAGT+CGG | + | chr5_1:59045158-59045177 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr5_1:59045158-59045177 | Msa0740210:CDS | 30.0% | |
| GTTGTTCTCATAGACTATTA+TGG | + | chr5_1:59045261-59045280 | None:intergenic | 30.0% | |
| ! | AAAACTACAAAGGTTTTGCT+TGG | + | chr5_1:59045400-59045419 | None:intergenic | 30.0% |
| TAATTGAATTGTTTCCTAGG+TGG | - | chr5_1:59045440-59045459 | Msa0740210:intron | 30.0% | |
| AAACTTCTTCGCTGAATAAA+GGG | + | chr5_1:59045656-59045675 | None:intergenic | 30.0% | |
| ! | GATTATTGCTTTGAATGTGT+TGG | - | chr5_1:59045760-59045779 | Msa0740210:intron | 30.0% |
| TGAAAAAAAATGTGGTTGGA+AGG | + | chr5_1:59045988-59046007 | None:intergenic | 30.0% | |
| TGGATGAAAAAAAATGTGGT+TGG | + | chr5_1:59045992-59046011 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCATCCACAATGCT+TGG | - | chr5_1:59045999-59046018 | Msa0740210:intron | 30.0% |
| TTGCACACAAATGAAGAATA+TGG | + | chr5_1:59046108-59046127 | None:intergenic | 30.0% | |
| ! | TACTTGTTGAAAGAATGGAT+TGG | - | chr5_1:59046157-59046176 | Msa0740210:CDS | 30.0% |
| !! | GAAAGAATGGATTGGAAAAT+TGG | - | chr5_1:59046165-59046184 | Msa0740210:CDS | 30.0% |
| TGGGGAAAAACAATTATGTT+AGG | - | chr5_1:59046205-59046224 | Msa0740210:intron | 30.0% | |
| CATGTAGCGTTTAAAAAGAA+TGG | + | chr5_1:59046341-59046360 | None:intergenic | 30.0% | |
| ! | CATTCTTTTTAAACGCTACA+TGG | - | chr5_1:59046339-59046358 | Msa0740210:intron | 30.0% |
| AGATCAAATATAGAAGTCAG+AGG | + | chr5_1:59046715-59046734 | None:intergenic | 30.0% | |
| ! | CTTTACATCTTATGGGTTGT+TGG | + | chr5_1:59043519-59043538 | None:intergenic | 35.0% |
| CAACAACCCATAAGATGTAA+AGG | - | chr5_1:59043517-59043536 | Msa0740210:intron | 35.0% | |
| CACACACCTTTACATCTTAT+GGG | + | chr5_1:59043526-59043545 | None:intergenic | 35.0% | |
| ACACACACCTTTACATCTTA+TGG | + | chr5_1:59043527-59043546 | None:intergenic | 35.0% | |
| AAGATCTCCTCAATTATCAG+TGG | + | chr5_1:59043804-59043823 | None:intergenic | 35.0% | |
| GATAATTGAGGAGATCTTTG+TGG | - | chr5_1:59043806-59043825 | Msa0740210:intron | 35.0% | |
| CTTCCTTCCTTTACCTAATT+AGG | + | chr5_1:59044158-59044177 | None:intergenic | 35.0% | |
| TTATTACTACCCTGTTTGTG+TGG | - | chr5_1:59044185-59044204 | Msa0740210:CDS | 35.0% | |
| CATTGTTATCCCAATCTTCA+TGG | - | chr5_1:59044651-59044670 | Msa0740210:intron | 35.0% | |
| GTATCATATCTAAGCATCCA+AGG | + | chr5_1:59044751-59044770 | None:intergenic | 35.0% | |
| TGGATCAATCTTGAGTAGAT+TGG | + | chr5_1:59044860-59044879 | None:intergenic | 35.0% | |
| TCAACAGGTATGCAAATTCA+AGG | - | chr5_1:59044922-59044941 | Msa0740210:CDS | 35.0% | |
| GAAAACAGCAAATGTTGAAC+CGG | - | chr5_1:59045035-59045054 | Msa0740210:intron | 35.0% | |
| AAAACAGCAAATGTTGAACC+GGG | - | chr5_1:59045036-59045055 | Msa0740210:intron | 35.0% | |
| !!! | ACAGTAGCTATTTTTGGACT+CGG | - | chr5_1:59045063-59045082 | Msa0740210:CDS | 35.0% |
| !! | ATTTTTGGACTCGGATGTAT+TGG | - | chr5_1:59045072-59045091 | Msa0740210:CDS | 35.0% |
| AACTTCTTCGCTGAATAAAG+GGG | + | chr5_1:59045655-59045674 | None:intergenic | 35.0% | |
| CAAACTTCTTCGCTGAATAA+AGG | + | chr5_1:59045657-59045676 | None:intergenic | 35.0% | |
| CTTTATTCAGCGAAGAAGTT+TGG | - | chr5_1:59045655-59045674 | Msa0740210:intron | 35.0% | |
| CTTTGTAAATCCTGGAGAAT+TGG | - | chr5_1:59045687-59045706 | Msa0740210:intron | 35.0% | |
| !! | GATTTGTTTTCCAATTCTCC+AGG | + | chr5_1:59045700-59045719 | None:intergenic | 35.0% |
| GTTATCATAGAGATGACTGA+TGG | - | chr5_1:59045730-59045749 | Msa0740210:intron | 35.0% | |
| ! | TTGCTTTGAATGTGTTGGTA+TGG | - | chr5_1:59045765-59045784 | Msa0740210:intron | 35.0% |
| AGCATATGCTTCATGTAGAA+AGG | - | chr5_1:59045804-59045823 | Msa0740210:intron | 35.0% | |
| GATACTTTGCACCAATAACA+TGG | + | chr5_1:59045894-59045913 | None:intergenic | 35.0% | |
| AGATTAGTAATCGGCAAAGT+CGG | + | chr5_1:59045919-59045938 | None:intergenic | 35.0% | |
| AGTTGGCAGAGATTAGTAAT+CGG | + | chr5_1:59045928-59045947 | None:intergenic | 35.0% | |
| ! | CTGCATACTTGTTGAAAGAA+TGG | - | chr5_1:59046152-59046171 | Msa0740210:CDS | 35.0% |
| TTGATACTCAACTTAGATCC+TGG | + | chr5_1:59046241-59046260 | None:intergenic | 35.0% | |
| TAAGAGTCTTCCCTTGAAAA+AGG | + | chr5_1:59046276-59046295 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGGAAGACTCTTA+TGG | - | chr5_1:59046276-59046295 | Msa0740210:intron | 35.0% |
| TTTCAAGGGAAGACTCTTAT+GGG | - | chr5_1:59046277-59046296 | Msa0740210:intron | 35.0% | |
| ACTCTTATGGGGTCTATATT+TGG | - | chr5_1:59046289-59046308 | Msa0740210:intron | 35.0% | |
| ! | TTTTAAACGCTACATGGACA+AGG | - | chr5_1:59046345-59046364 | Msa0740210:intron | 35.0% |
| ! | TATGATCTCTTCCTCTCTTT+TGG | - | chr5_1:59046402-59046421 | Msa0740210:intron | 35.0% |
| ! | GGATGATTTTGTTACACATG+AGG | - | chr5_1:59046540-59046559 | Msa0740210:intron | 35.0% |
| ! | TGATTTTGTTACACATGAGG+TGG | - | chr5_1:59046543-59046562 | Msa0740210:intron | 35.0% |
| TGACTAAAGGAGAATGTCTT+CGG | - | chr5_1:59046599-59046618 | Msa0740210:intron | 35.0% | |
| TCAATTATCAGTGGTTCACC+TGG | + | chr5_1:59043795-59043814 | None:intergenic | 40.0% | |
| AGGTGAACCACTGATAATTG+AGG | - | chr5_1:59043794-59043813 | Msa0740210:intron | 40.0% | |
| GATATCACTGTGACAAAGAG+AGG | + | chr5_1:59043874-59043893 | None:intergenic | 40.0% | |
| ATCCTAGGAAAAATTGCAGG+AGG | + | chr5_1:59044050-59044069 | None:intergenic | 40.0% | |
| ATATTGGGTCATGAGGCAAT+TGG | - | chr5_1:59044068-59044087 | Msa0740210:intron | 40.0% | |
| TATTGGGTCATGAGGCAATT+GGG | - | chr5_1:59044069-59044088 | Msa0740210:intron | 40.0% | |
| AGTGTATGACCACACAAACA+GGG | + | chr5_1:59044197-59044216 | None:intergenic | 40.0% | |
| CTCACATTGCCAAAGTTCTT+AGG | - | chr5_1:59044319-59044338 | Msa0740210:intron | 40.0% | |
| CATTGCAGACCTAAGAACTT+TGG | + | chr5_1:59044331-59044350 | None:intergenic | 40.0% | |
| TTGGATTGTTAACCGGACTT+CGG | + | chr5_1:59044486-59044505 | None:intergenic | 40.0% | |
| ! | TTTAGTGTGGTGGAAAGTGT+TGG | - | chr5_1:59044598-59044617 | Msa0740210:intron | 40.0% |
| CACAATCAGCCATGAAGATT+GGG | + | chr5_1:59044663-59044682 | None:intergenic | 40.0% | |
| TCACAATCAGCCATGAAGAT+TGG | + | chr5_1:59044664-59044683 | None:intergenic | 40.0% | |
| AAACAGCAAATGTTGAACCG+GGG | - | chr5_1:59045037-59045056 | Msa0740210:intron | 40.0% | |
| ! | ACTCGGATGTATTGGATTAG+CGG | - | chr5_1:59045080-59045099 | Msa0740210:CDS | 40.0% |
| !! | GATGTATTGGATTAGCGGTA+TGG | - | chr5_1:59045085-59045104 | Msa0740210:CDS | 40.0% |
| ! | TTTTGTAGTTTGGGCCTGTT+TGG | - | chr5_1:59045131-59045150 | Msa0740210:CDS | 40.0% |
| TCAAATAAGTCGGTCCAAAC+AGG | + | chr5_1:59045148-59045167 | None:intergenic | 40.0% | |
| TGTGGAGCAACTAGGATTAT+AGG | - | chr5_1:59045480-59045499 | Msa0740210:intron | 40.0% | |
| AGCAACTAGGATTATAGGTG+TGG | - | chr5_1:59045485-59045504 | Msa0740210:intron | 40.0% | |
| GTCACAGACTTTGTAAATCC+TGG | - | chr5_1:59045679-59045698 | Msa0740210:intron | 40.0% | |
| GGAAAACAAATCTGTGAGTC+AGG | - | chr5_1:59045708-59045727 | Msa0740210:intron | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | - | chr5_1:59045733-59045752 | Msa0740210:intron | 40.0% | |
| ! | ATGTGTTGGTATGGCATCAT+TGG | - | chr5_1:59045774-59045793 | Msa0740210:intron | 40.0% |
| TGGAAGGATAGACTCCATAA+GGG | + | chr5_1:59045972-59045991 | None:intergenic | 40.0% | |
| TTGGAAGGATAGACTCCATA+AGG | + | chr5_1:59045973-59045992 | None:intergenic | 40.0% | |
| !!! | TGGTGTTTTGATTTCAGGGT+TGG | - | chr5_1:59046185-59046204 | Msa0740210:CDS | 40.0% |
| !!! | GGTGTTTTGATTTCAGGGTT+GGG | - | chr5_1:59046186-59046205 | Msa0740210:CDS | 40.0% |
| !!! | GTGTTTTGATTTCAGGGTTG+GGG | - | chr5_1:59046187-59046206 | Msa0740210:intron | 40.0% |
| !!! | AGTACTGACGTCCTTTTTCA+AGG | - | chr5_1:59046262-59046281 | Msa0740210:intron | 40.0% |
| !!! | GTACTGACGTCCTTTTTCAA+GGG | - | chr5_1:59046263-59046282 | Msa0740210:intron | 40.0% |
| TTCAAGGGAAGACTCTTATG+GGG | - | chr5_1:59046278-59046297 | Msa0740210:intron | 40.0% | |
| CTTATGGGGTCTATATTTGG+AGG | - | chr5_1:59046292-59046311 | Msa0740210:intron | 40.0% | |
| AGAATGGGTACATCAGACTT+GGG | + | chr5_1:59046325-59046344 | None:intergenic | 40.0% | |
| AAGAATGGGTACATCAGACT+TGG | + | chr5_1:59046326-59046345 | None:intergenic | 40.0% | |
| ! | AATGTCTTCGGTGTGTGATT+TGG | - | chr5_1:59046611-59046630 | Msa0740210:intron | 40.0% |
| TGCAGCAGGTTTATCTTCCA+TGG | + | chr5_1:59043482-59043501 | None:intergenic | 45.0% | |
| ATACGAATCCTAGCTTCACG+TGG | + | chr5_1:59043843-59043862 | None:intergenic | 45.0% | |
| ! | AGCCTCCTGCAATTTTTCCT+AGG | - | chr5_1:59044045-59044064 | Msa0740210:intron | 45.0% |
| TCCTAGGATATTGGGTCATG+AGG | - | chr5_1:59044061-59044080 | Msa0740210:intron | 45.0% | |
| GAGTGTATGACCACACAAAC+AGG | + | chr5_1:59044198-59044217 | None:intergenic | 45.0% | |
| TTGTTAACTACGTGCATGCG+TGG | + | chr5_1:59044220-59044239 | None:intergenic | 45.0% | |
| TCGGTCCGACTCTCAAAAAT+TGG | + | chr5_1:59044467-59044486 | None:intergenic | 45.0% | |
| TTGATACACCACAACTGAGG+AGG | + | chr5_1:59044906-59044925 | None:intergenic | 45.0% | |
| CTGTTGATACACCACAACTG+AGG | + | chr5_1:59044909-59044928 | None:intergenic | 45.0% | |
| CTCAGTTGTGGTGTATCAAC+AGG | - | chr5_1:59044907-59044926 | Msa0740210:CDS | 45.0% | |
| AAAATAGCTACTGTCGACCC+CGG | + | chr5_1:59045057-59045076 | None:intergenic | 45.0% | |
| !! | GGGTCGACAGTAGCTATTTT+TGG | - | chr5_1:59045057-59045076 | Msa0740210:CDS | 45.0% |
| ATTGTTTCCTAGGTGGCTGA+AGG | - | chr5_1:59045447-59045466 | Msa0740210:intron | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | - | chr5_1:59045472-59045491 | Msa0740210:intron | 45.0% | |
| TTCTTCGCTGAATAAAGGGG+AGG | + | chr5_1:59045652-59045671 | None:intergenic | 45.0% | |
| CTAATCTCTGCCAACTGTCA+TGG | - | chr5_1:59045932-59045951 | Msa0740210:intron | 45.0% | |
| CAACTAGACACCATGACAGT+TGG | + | chr5_1:59045945-59045964 | None:intergenic | 45.0% | |
| CAACTGTCATGGTGTCTAGT+TGG | - | chr5_1:59045943-59045962 | Msa0740210:intron | 45.0% | |
| AAGGATAGACTCCATAAGGG+TGG | + | chr5_1:59045969-59045988 | None:intergenic | 45.0% | |
| GATCTCTCAAGCAAGGTTTC+GGG | + | chr5_1:59046026-59046045 | None:intergenic | 45.0% | |
| GGATCTCTCAAGCAAGGTTT+CGG | + | chr5_1:59046027-59046046 | None:intergenic | 45.0% | |
| CAAAGTTGCATTAGTCCGAG+TGG | + | chr5_1:59046060-59046079 | None:intergenic | 45.0% | |
| CACTCGGACTAATGCAACTT+TGG | - | chr5_1:59046058-59046077 | Msa0740210:intron | 45.0% | |
| ! | TCTTCGGTGTGTGATTTGGA+TGG | - | chr5_1:59046615-59046634 | Msa0740210:intron | 45.0% |
| !! | TAATAAAATAGTATATAATA+TGG | + | chr5_1:59043332-59043351 | None:intergenic | 5.0% |
| CTTCCATGGCGATGAGTCAA+GGG | + | chr5_1:59043468-59043487 | None:intergenic | 50.0% | |
| TCTTCCATGGCGATGAGTCA+AGG | + | chr5_1:59043469-59043488 | None:intergenic | 50.0% | |
| ATCCTAGCTTCACGTGGCAT+TGG | + | chr5_1:59043837-59043856 | None:intergenic | 50.0% | |
| GCCTCATGACCCAATATCCT+AGG | + | chr5_1:59044065-59044084 | None:intergenic | 50.0% | |
| !! | TGTGGTGGAAAGTGTTGGAG+AGG | - | chr5_1:59044603-59044622 | Msa0740210:intron | 50.0% |
| ATCCAGCAATTCCTCCCAAC+AGG | - | chr5_1:59044875-59044894 | Msa0740210:intron | 50.0% | |
| TCCAGCAATTCCTCCCAACA+GGG | - | chr5_1:59044876-59044895 | Msa0740210:intron | 50.0% | |
| !! | TTTTAGGGGTAGGTGCTGCA+TGG | - | chr5_1:59045013-59045032 | Msa0740210:intron | 50.0% |
| GCTGAAGGAGCTAGACTTTG+TGG | - | chr5_1:59045462-59045481 | Msa0740210:intron | 50.0% | |
| TGTCTAGTTGGCCACCCTTA+TGG | - | chr5_1:59045955-59045974 | Msa0740210:intron | 50.0% | |
| TGCATTAGTCCGAGTGGAAC+TGG | + | chr5_1:59046054-59046073 | None:intergenic | 50.0% | |
| ATGTTAGGAGTGGACAAGCC+AGG | - | chr5_1:59046220-59046239 | Msa0740210:intron | 50.0% | |
| !! | AGTCAAGGGAGGGTACTGGA+AGG | + | chr5_1:59043454-59043473 | None:intergenic | 55.0% |
| ! | GATGAGTCAAGGGAGGGTAC+TGG | + | chr5_1:59043458-59043477 | None:intergenic | 55.0% |
| CATGGCGATGAGTCAAGGGA+GGG | + | chr5_1:59043464-59043483 | None:intergenic | 55.0% | |
| ! | CCTTCACTTGTTGCTGCAGC+AGG | + | chr5_1:59043496-59043515 | None:intergenic | 55.0% |
| CCTGCTGCAGCAACAAGTGA+AGG | - | chr5_1:59043493-59043512 | Msa0740210:intron | 55.0% | |
| ! | CTAGCTTCACGTGGCATTGG+TGG | + | chr5_1:59043834-59043853 | None:intergenic | 55.0% |
| CACCAATGCCACGTGAAGCT+AGG | - | chr5_1:59043832-59043851 | Msa0740210:intron | 55.0% | |
| TTGAGAGTCGGACCGAAGTC+CGG | - | chr5_1:59044471-59044490 | Msa0740210:CDS | 55.0% | |
| ! | TCTAGCTCCTTCAGCCACCT+AGG | + | chr5_1:59045457-59045476 | None:intergenic | 55.0% |
| ! | GGTTTCGGGTCCAAGCATTG+TGG | + | chr5_1:59046012-59046031 | None:intergenic | 55.0% |
| GGACTCGGATCTCTCAAGCA+AGG | + | chr5_1:59046033-59046052 | None:intergenic | 55.0% | |
| GATCCGAGTCCAGTTCCACT+CGG | - | chr5_1:59046042-59046061 | Msa0740210:intron | 55.0% | |
| AGTCCGAGTGGAACTGGACT+CGG | + | chr5_1:59046048-59046067 | None:intergenic | 55.0% | |
| CCATGGCGATGAGTCAAGGG+AGG | + | chr5_1:59043465-59043484 | None:intergenic | 60.0% | |
| CCTCCCTTGACTCATCGCCA+TGG | - | chr5_1:59043462-59043481 | Msa0740210:intron | 60.0% | |
| GCCCTGTTGGGAGGAATTGC+TGG | + | chr5_1:59044880-59044899 | None:intergenic | 60.0% | |
| ! | CTGAGGAGGCATGCCCTGTT+GGG | + | chr5_1:59044892-59044911 | None:intergenic | 60.0% |
| ! | ACTGAGGAGGCATGCCCTGT+TGG | + | chr5_1:59044893-59044912 | None:intergenic | 60.0% |
| AGGGCATGCCTCCTCAGTTG+TGG | - | chr5_1:59044895-59044914 | Msa0740210:CDS | 60.0% | |
| GCTGCGGTGTGTCGCAAACC+AGG | - | chr5_1:59043774-59043793 | Msa0740210:intron | 65.0% | |
| ! | AGGAGGCATGCCCTGTTGGG+AGG | + | chr5_1:59044889-59044908 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59043229 | 59046751 | 59043229 | ID=Msa0740210;Name=Msa0740210 |
| chr5_1 | mRNA | 59043229 | 59046751 | 59043229 | ID=Msa0740210-mRNA-1;Parent=Msa0740210;Name=Msa0740210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|1|1|1|0.88|0.8|10|106|389 |
| chr5_1 | exon | 59043229 | 59043451 | 59043229 | ID=Msa0740210-mRNA-1:exon:16929;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59043614 | 59043778 | 59043614 | ID=Msa0740210-mRNA-1:exon:16928;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59044155 | 59044315 | 59044155 | ID=Msa0740210-mRNA-1:exon:16927;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59044446 | 59044521 | 59044446 | ID=Msa0740210-mRNA-1:exon:16926;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59044879 | 59044961 | 59044879 | ID=Msa0740210-mRNA-1:exon:16925;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59045052 | 59045377 | 59045052 | ID=Msa0740210-mRNA-1:exon:16924;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59045890 | 59045936 | 59045890 | ID=Msa0740210-mRNA-1:exon:16923;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59046069 | 59046205 | 59046069 | ID=Msa0740210-mRNA-1:exon:16922;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59046442 | 59046521 | 59046442 | ID=Msa0740210-mRNA-1:exon:16921;Parent=Msa0740210-mRNA-1 |
| chr5_1 | exon | 59046678 | 59046751 | 59046678 | ID=Msa0740210-mRNA-1:exon:16920;Parent=Msa0740210-mRNA-1 |
| chr5_1 | five_prime_UTR | 59046678 | 59046751 | 59046678 | ID=Msa0740210-mRNA-1:five_prime_utr;Parent=Msa0740210-mRNA-1 |
| chr5_1 | five_prime_UTR | 59046500 | 59046521 | 59046500 | ID=Msa0740210-mRNA-1:five_prime_utr;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59046442 | 59046499 | 59046442 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59046069 | 59046205 | 59046069 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59045890 | 59045936 | 59045890 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59045052 | 59045377 | 59045052 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59044879 | 59044961 | 59044879 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59044446 | 59044521 | 59044446 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59044155 | 59044315 | 59044155 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59043614 | 59043778 | 59043614 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | CDS | 59043335 | 59043451 | 59043335 | ID=Msa0740210-mRNA-1:cds;Parent=Msa0740210-mRNA-1 |
| chr5_1 | three_prime_UTR | 59043229 | 59043334 | 59043229 | ID=Msa0740210-mRNA-1:three_prime_utr;Parent=Msa0740210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
