AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306580 MtrunA17_Chr8g0386951 97.864 749 16 0 1 749 1 749 0.0 1500
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306580 AT1G63680.1 68.509 778 200 11 1 749 1 762 0.0 1006
Msa1306580 AT1G63680.3 68.509 778 200 11 1 749 1 762 0.0 1006
Msa1306580 AT1G63680.2 68.509 778 200 11 1 749 1 762 0.0 1006

Find 255 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATTCAACATGATTCT+AGG 0.209520 8_4:-1542565 Msa1306580:CDS
AATCAGTTGGATTCGTCTTA+TGG 0.216741 8_4:-1542191 Msa1306580:CDS
TGGGGTTCTGGATGCTGTTT+TGG 0.247514 8_4:-1542171 Msa1306580:CDS
TACTTGAGAACAACATATTT+TGG 0.249300 8_4:-1538922 Msa1306580:three_prime_UTR
TTGTTCTCAAGTACACTTCT+AGG 0.250600 8_4:+1538932 None:intergenic
TGATAGGGGCCTTTCTTTGC+AGG 0.258876 8_4:-1539332 Msa1306580:three_prime_UTR
CTTCTATTTGATATGTTTCA+TGG 0.262320 8_4:+1539725 None:intergenic
AACAGCTTCAATTTCGGATT+TGG 0.263849 8_4:+1542862 None:intergenic
CTCTTCAACAGCTTCAATTT+CGG 0.267858 8_4:+1542856 None:intergenic
CATTGCTGTTGGGGCACCCT+TGG 0.269688 8_4:-1541700 Msa1306580:CDS
GATGAGTTTAGCTGAGCTTT+TGG 0.274198 8_4:-1542642 Msa1306580:CDS
GAGTTGGATTTGTTGGTATT+TGG 0.276747 8_4:+1543093 None:intergenic
GAAGAGGTTGATGCAGTTCC+TGG 0.277253 8_4:-1541657 Msa1306580:CDS
CTGTTGCTATCTTTGTCATC+AGG 0.281451 8_4:+1541274 None:intergenic
AATTTGGAAGTTGAAATTAA+TGG 0.284196 8_4:-1542584 Msa1306580:CDS
TGTTTCGGTTTACGGGAATT+TGG 0.293661 8_4:-1542600 Msa1306580:CDS
TCAAATAGAAGGTGAGAAAA+AGG 0.297061 8_4:-1539713 Msa1306580:CDS
TGGCAGTTGGCATTGCTGTT+GGG 0.297200 8_4:-1541710 Msa1306580:CDS
TCGGGTGGGTCGTCGTCAGC+TGG 0.315585 8_4:+1543145 None:intergenic
ATTGATATTGAAGATACTTT+AGG 0.316478 8_4:-1542428 Msa1306580:CDS
ATGCAAGAGTATCTGAAATA+TGG 0.320054 8_4:-1541008 Msa1306580:CDS
TGCGCCTTTGTTCGTTTCAA+TGG 0.326884 8_4:-1541913 Msa1306580:CDS
GTGGTTCCTGTTTCGGTTTA+CGG 0.327895 8_4:-1542608 Msa1306580:CDS
TACTTTAGGTTGTAAGGCTT+TGG 0.331424 8_4:-1542414 Msa1306580:CDS
CGGCTTGGAGTTGGATTTGT+TGG 0.335195 8_4:+1543086 None:intergenic
GATTCTAGGCTTGTTACTTC+TGG 0.335990 8_4:-1542551 Msa1306580:CDS
TAATACACCTGCTGGGATAC+TGG 0.337449 8_4:-1541787 Msa1306580:CDS
TGAAGATACTTTAGGTTGTA+AGG 0.337482 8_4:-1542420 Msa1306580:CDS
ACGGGCCTTTCGGTTATGAT+AGG 0.338458 8_4:-1539348 Msa1306580:three_prime_UTR
TAGAATGGTGAAGGTTGAAT+TGG 0.341431 8_4:+1543276 None:intergenic
GATAATCTAGCCTGCTTGAT+TGG 0.342565 8_4:+1539039 None:intergenic
TGGTTCCTGTTTCGGTTTAC+GGG 0.342723 8_4:-1542607 Msa1306580:CDS
GCGCCTTTGTTCGTTTCAAT+GGG 0.352036 8_4:-1541912 Msa1306580:CDS
AGGTTCGTCGGGAGCGTCTT+GGG 0.352375 8_4:+1542991 None:intergenic
GAGTAAAGTGGTTCCTGTTT+CGG 0.355296 8_4:-1542615 Msa1306580:CDS
ATGGCTCTTATTGGGATAAC+GGG 0.357306 8_4:-1542320 Msa1306580:CDS
ATCAGTTGGATTCGTCTTAT+GGG 0.358561 8_4:-1542190 Msa1306580:CDS
GGATTCGTCTTATGGGGTTC+TGG 0.360276 8_4:-1542183 Msa1306580:CDS
TTCTTCGCGCGGATTGGCTC+AGG 0.360852 8_4:-1542090 Msa1306580:CDS
TTGACGAGGAACAAGCATTT+GGG 0.363745 8_4:-1541620 Msa1306580:CDS
ATTTCGGATTTGGCGGGATT+AGG 0.364946 8_4:+1542872 None:intergenic
ATTGGGATAACGGGGACTTA+TGG 0.366671 8_4:-1542311 Msa1306580:CDS
ATTGACGAGGAACAAGCATT+TGG 0.368221 8_4:-1541621 Msa1306580:CDS
GCTAAACTCATCTTAAACTT+AGG 0.371166 8_4:+1542653 None:intergenic
GGGAGGGCGGAGAGGAAGTA+AGG 0.374763 8_4:+1543204 None:intergenic
CCCTTGGAGGATATTGTTAG+AGG 0.378411 8_4:-1541684 Msa1306580:CDS
GTGGCAGTTGGCATTGCTGT+TGG 0.380126 8_4:-1541711 Msa1306580:CDS
TGAGGCTTCTTCGCGCGGAT+TGG 0.380295 8_4:-1542096 Msa1306580:CDS
AAGCCTCCCTGCACTCTTCT+CGG 0.384444 8_4:+1539677 None:intergenic
ATGGCTAAGATGCTTCATAA+TGG 0.390726 8_4:-1542137 Msa1306580:CDS
ATCTTCACCCTTGGGGTTGT+CGG 0.392594 8_4:+1541224 None:intergenic
GTGCGATGGCGGAGGGAGGG+CGG 0.392701 8_4:+1543191 None:intergenic
GGGTCGTCGTCAGCTGGGTT+TGG 0.393648 8_4:+1543151 None:intergenic
TGCTGTTGGGGCACCCTTGG+AGG 0.395991 8_4:-1541697 Msa1306580:CDS
CCACTGATACCAAAGGTTGC+TGG 0.396340 8_4:-1539432 Msa1306580:CDS
CATGAAACATATCAAATAGA+AGG 0.403779 8_4:-1539724 Msa1306580:CDS
GAATTGGGTTTGATAGTTGT+AGG 0.404063 8_4:+1543292 None:intergenic
GTCAAAAGAAACGGGCCTTT+CGG 0.405006 8_4:-1539358 Msa1306580:three_prime_UTR
TCTACATCGTCGACTTCATC+AGG 0.406443 8_4:+1542827 None:intergenic
CGGAATCAATCTGGTGAAGA+TGG 0.407873 8_4:-1539304 Msa1306580:three_prime_UTR
ATCTAAATCAAAGGAAGATT+CGG 0.408810 8_4:+1542718 None:intergenic
AATGTCACAACAGGAACTTC+AGG 0.413089 8_4:+1541885 None:intergenic
GGAGGTGAGGGGTTTGTATG+GGG 0.414593 8_4:+1543388 None:intergenic
GCGGAATCTTCGCCTACTTC+GGG 0.414843 8_4:+1543127 None:intergenic
AAATTCCCGTAAACCGAAAC+AGG 0.415050 8_4:+1542602 None:intergenic
AGGAAGTAAGGGATAAGATA+AGG 0.415514 8_4:+1543216 None:intergenic
AGCGGAATCTTCGCCTACTT+CGG 0.417036 8_4:+1543126 None:intergenic
GAAGGCGAGCGCGGTCGGCT+TGG 0.419138 8_4:+1543071 None:intergenic
GGGAGGTGAGGGGTTTGTAT+GGG 0.420216 8_4:+1543387 None:intergenic
ATTTGTGTACTCAGGTGAAC+AGG 0.423715 8_4:+1539388 None:intergenic
TCCGCCGAAGACGATTTATT+CGG 0.424928 8_4:-1542956 Msa1306580:CDS
CTTTGGTATCAGTGGCTCTC+TGG 0.425305 8_4:+1539440 None:intergenic
ATTGTTAGCCCAGCAACCTT+TGG 0.426686 8_4:+1539423 None:intergenic
CAAAGAGAGTTCAAACTTCA+AGG 0.427492 8_4:+1541830 None:intergenic
CAACCTCGCAGGATTATAAC+TGG 0.428629 8_4:-1541531 Msa1306580:intron
GAAATTTCGTCCGGTTTACT+AGG 0.429518 8_4:-1541765 Msa1306580:CDS
AGTACACTTCTAGGAAAGAT+AGG 0.429709 8_4:+1538941 None:intergenic
AAATCCCTGCATGTGAAAGC+TGG 0.432388 8_4:+1538972 None:intergenic
TATATATTTGCCTAGGAAGC+AGG 0.435093 8_4:+1539096 None:intergenic
GGATGAGGAGGACGAGGAAG+AGG 0.435631 8_4:-1542018 Msa1306580:CDS
TCGATTGCTAGTTATGTTCA+TGG 0.437145 8_4:-1542218 Msa1306580:CDS
ACACGCTAGTCCTGCTTCCT+AGG 0.437326 8_4:-1539106 Msa1306580:three_prime_UTR
AGGGAGGTGAGGGGTTTGTA+TGG 0.437874 8_4:+1543386 None:intergenic
ATACATGGATCTTCACCCTT+GGG 0.437950 8_4:+1541216 None:intergenic
TGTTGCTATCTTTGTCATCA+GGG 0.440012 8_4:+1541275 None:intergenic
TGCATGGTGCAGGTGATTGC+TGG 0.441426 8_4:-1539754 Msa1306580:intron
AGAATGGTGAAGGTTGAATT+GGG 0.442438 8_4:+1543277 None:intergenic
GTGCGAGCTTCAGTTGCAAT+GGG 0.443311 8_4:-1540915 Msa1306580:CDS
AAGGTTCGTCGGGAGCGTCT+TGG 0.443705 8_4:+1542990 None:intergenic
GGAAGTAAGGGATAAGATAA+GGG 0.446717 8_4:+1543217 None:intergenic
CACTGATACCAAAGGTTGCT+GGG 0.448175 8_4:-1539431 Msa1306580:CDS
ATTACAGTGGCATGTAAGCC+AGG 0.448898 8_4:+1539151 None:intergenic
AGCTTCAATTTCGGATTTGG+CGG 0.454097 8_4:+1542865 None:intergenic
CATGGCTCTTATTGGGATAA+CGG 0.454105 8_4:-1542321 Msa1306580:CDS
TACTCCCAGCTTTCACATGC+AGG 0.454876 8_4:-1538977 Msa1306580:three_prime_UTR
TTGTAAGGCTTTGGTTATTG+TGG 0.454945 8_4:-1542405 Msa1306580:CDS
GAATTGAAGAAGGAAGTGTT+TGG 0.456028 8_4:+1543249 None:intergenic
CAGAATTCACAGTGAGTTCA+CGG 0.458201 8_4:+1542789 None:intergenic
AATTTGTTTGTGTGTTGTGT+TGG 0.460206 8_4:-1542527 Msa1306580:CDS
AGCGTCTTGGGAGTCGGCGA+TGG 0.463001 8_4:+1543003 None:intergenic
CCGTCGGGTGCGATGGCGGA+GGG 0.463995 8_4:+1543184 None:intergenic
ATTCTTGCTGCTGTGGCAGT+TGG 0.464613 8_4:-1541723 Msa1306580:CDS
TAAAAGTATGTATGAAGCGA+TGG 0.466444 8_4:-1542264 Msa1306580:CDS
ACAACTTTCCTATGCCGCTC+AGG 0.466784 8_4:+1541954 None:intergenic
CACTTCTAGGAAAGATAGGC+TGG 0.467392 8_4:+1538945 None:intergenic
CAGGAGCATCGGAATCAATC+TGG 0.467992 8_4:-1539313 Msa1306580:three_prime_UTR
GAGCGCGGTCGGCTTGGAGT+TGG 0.470195 8_4:+1543077 None:intergenic
AATTGAAGAAGGAAGTGTTT+GGG 0.472045 8_4:+1543250 None:intergenic
TCTTCGCGCGGATTGGCTCA+GGG 0.472077 8_4:-1542089 Msa1306580:CDS
TGAAGAAGAAAGGGAGGTGA+GGG 0.474410 8_4:+1543376 None:intergenic
GAAACGAACAAAGGCGCACT+TGG 0.476109 8_4:+1541918 None:intergenic
GGAGGGCGGAGAGGAAGTAA+GGG 0.477130 8_4:+1543205 None:intergenic
GGCAGTTGGCATTGCTGTTG+GGG 0.477281 8_4:-1541709 Msa1306580:CDS
ATGAAGTAGGTCAAAAGAAA+CGG 0.477936 8_4:-1539367 Msa1306580:exon
TCCGTCGGGTGCGATGGCGG+AGG 0.478458 8_4:+1543183 None:intergenic
TTGCTGTGGTGAGGACGAAA+GGG 0.479403 8_4:-1541307 Msa1306580:CDS
CGGGCCTTTCGGTTATGATA+GGG 0.479425 8_4:-1539347 Msa1306580:three_prime_UTR
CGATTGCTAGTTATGTTCAT+GGG 0.481862 8_4:-1542217 Msa1306580:CDS
TACTATCCTCCTCTTTCAAA+TGG 0.483577 8_4:-1540975 Msa1306580:CDS
GCCTTTCTTTGCAGGAGCAT+CGG 0.485689 8_4:-1539324 Msa1306580:three_prime_UTR
TCCAACGCAAATGTCACAAC+AGG 0.486132 8_4:+1541876 None:intergenic
CATAAAGTTATACATGGCGT+TGG 0.486715 8_4:+1539017 None:intergenic
TCCGATGCTCCTGCAAAGAA+AGG 0.486942 8_4:+1539323 None:intergenic
CGGGTGCGATGGCGGAGGGA+GGG 0.487167 8_4:+1543188 None:intergenic
TGAAGTAGGTCAAAAGAAAC+GGG 0.487177 8_4:-1539366 Msa1306580:exon
GACGGGAAGGGAATTGAAGA+AGG 0.487522 8_4:+1543239 None:intergenic
TCGGGTGCGATGGCGGAGGG+AGG 0.487907 8_4:+1543187 None:intergenic
TCGATGACCGAGAAGAGTGC+AGG 0.490095 8_4:-1539684 Msa1306580:CDS
TTATGTGAACTGAAGAAGAA+AGG 0.491186 8_4:+1543366 None:intergenic
GTCGGGAGCGTCTTGGGAGT+CGG 0.495128 8_4:+1542997 None:intergenic
TGGTGGATCCTGAGCGGCAT+AGG 0.495152 8_4:-1541962 Msa1306580:CDS
CTCCTCTTTCAAATGGTCAC+AGG 0.497529 8_4:-1540968 Msa1306580:CDS
TTCACGAAGGCGAGCGCGGT+CGG 0.499086 8_4:+1543066 None:intergenic
TATGTGAACTGAAGAAGAAA+GGG 0.499874 8_4:+1543367 None:intergenic
GTTGCTGTGGTGAGGACGAA+AGG 0.503031 8_4:-1541308 Msa1306580:CDS
GGCGATGGCGGCGAGGTAAG+TGG 0.503512 8_4:+1543018 None:intergenic
TTGCAATTTATGTTGGACTC+TGG 0.504247 8_4:+1539254 None:intergenic
AAGCGATGGGTTTACGTACC+GGG 0.504543 8_4:-1542250 Msa1306580:CDS
CACATAATATACAGTCTGAA+TGG 0.506016 8_4:-1543350 Msa1306580:exon
TTTGTTTGAGACACAGGTGT+TGG 0.506074 8_4:-1541811 Msa1306580:CDS
AGTAATCTAGACAAGGCATC+AGG 0.506209 8_4:+1541573 None:intergenic
CCCTCTAACAATATCCTCCA+AGG 0.511090 8_4:+1541683 None:intergenic
ATTTCTCATAAAGTTATACA+TGG 0.511601 8_4:+1539011 None:intergenic
CCTACTTCATTTGTGTACTC+AGG 0.512817 8_4:+1539380 None:intergenic
TTTCGTCCGGTTTACTAGGA+AGG 0.513445 8_4:-1541761 Msa1306580:CDS
ATCAGTGGCGGAAGGTTCGT+CGG 0.513622 8_4:+1542979 None:intergenic
CATACATGGATCTTCACCCT+TGG 0.516195 8_4:+1541215 None:intergenic
TGTTCATGGGGATAATCAGT+TGG 0.516920 8_4:-1542204 Msa1306580:CDS
ATTGTGCCTTCCTAGTAAAC+CGG 0.517946 8_4:+1541755 None:intergenic
TTCGCCGAATAAATCGTCTT+CGG 0.522535 8_4:+1542952 None:intergenic
CTGAAGAAGAAAGGGAGGTG+AGG 0.523446 8_4:+1543375 None:intergenic
GTCTTGGGAGTCGGCGATGG+CGG 0.523882 8_4:+1543006 None:intergenic
GTGTTGGTTAATACACCTGC+TGG 0.525818 8_4:-1541795 Msa1306580:CDS
TGTGCGAGCTTCAGTTGCAA+TGG 0.526133 8_4:-1540916 Msa1306580:CDS
TCAGTGGCGGAAGGTTCGTC+GGG 0.527370 8_4:+1542980 None:intergenic
GGGATACTGGAAATTTCGTC+CGG 0.527829 8_4:-1541774 Msa1306580:CDS
ACTCTCTTTGTTTGAGACAC+AGG 0.527870 8_4:-1541817 Msa1306580:CDS
GTTGACGAGCTTCATCAAGC+TGG 0.530037 8_4:-1539646 Msa1306580:CDS
GAATCTTCGCCTACTTCGGG+TGG 0.530608 8_4:+1543130 None:intergenic
GGATAAGATAAGGGACGGGA+AGG 0.531341 8_4:+1543226 None:intergenic
ATGGAAGTTGCAATTTATGT+TGG 0.531347 8_4:+1539247 None:intergenic
AAGTGTGGAAGAGTAACAAA+TGG 0.536759 8_4:+1543322 None:intergenic
ATGTCACAACAGGAACTTCA+GGG 0.545053 8_4:+1541886 None:intergenic
ATATGTTGGCTGGGGTAGGA+TGG 0.546203 8_4:-1541034 Msa1306580:CDS
AAGAGGTTGATGCAGTTCCT+GGG 0.546388 8_4:-1541656 Msa1306580:CDS
AATCCCTGCATGTGAAAGCT+GGG 0.547200 8_4:+1538973 None:intergenic
GCTTCAATTTCGGATTTGGC+GGG 0.551169 8_4:+1542866 None:intergenic
GGGTCATAGTGGACTATGCT+CGG 0.551938 8_4:-1541599 Msa1306580:CDS
CTTCGCGCGGATTGGCTCAG+GGG 0.552284 8_4:-1542088 Msa1306580:CDS
CGGGTGGGTCGTCGTCAGCT+GGG 0.552775 8_4:+1543146 None:intergenic
AAAAGTATGTATGAAGCGAT+GGG 0.554179 8_4:-1542263 Msa1306580:CDS
TACGAATTTGATGGATGAGG+AGG 0.554797 8_4:-1542030 Msa1306580:CDS
GAAGCGATGGGTTTACGTAC+CGG 0.555215 8_4:-1542251 Msa1306580:CDS
TCCTGTTGTGACATTTGCGT+TGG 0.555371 8_4:-1541877 Msa1306580:CDS
GGAATCAATCTGGTGAAGAT+GGG 0.556201 8_4:-1539303 Msa1306580:three_prime_UTR
CCTTGGAGGATATTGTTAGA+GGG 0.557443 8_4:-1541683 Msa1306580:CDS
ACTATCAAAATCTAAATCAA+AGG 0.561397 8_4:+1542709 None:intergenic
TAAGAGAGCTTCAACCTCGC+AGG 0.561657 8_4:-1541542 Msa1306580:CDS
TCAATTAACTCACACCTCCC+AGG 0.561944 8_4:+1541639 None:intergenic
CAGCTACCCTCCTAATGTCA+TGG 0.562556 8_4:+1540937 None:intergenic
ATCGTCTTCGGCGGAATCAG+TGG 0.564284 8_4:+1542964 None:intergenic
ACAAGCATTTGGGGTCATAG+TGG 0.564472 8_4:-1541610 Msa1306580:CDS
TCAGTTGGATTCGTCTTATG+GGG 0.564527 8_4:-1542189 Msa1306580:CDS
ATGGCGGAGGGAGGGCGGAG+AGG 0.565355 8_4:+1543196 None:intergenic
GTGAATTCTGATGAATCTCA+AGG 0.565712 8_4:-1542776 Msa1306580:CDS
TTTGAAGTGATTGGTTGCTG+TGG 0.568006 8_4:-1541321 Msa1306580:intron
GGGCCTTTCGGTTATGATAG+GGG 0.568070 8_4:-1539346 Msa1306580:three_prime_UTR
AAATGCTGTTCTTGCTACGT+TGG 0.568754 8_4:-1542375 Msa1306580:CDS
GTTGTAGGAGAAATGAAGTG+TGG 0.569223 8_4:+1543307 None:intergenic
CGTAAAGAGTTCGTTAAGCA+AGG 0.569603 8_4:-1542905 Msa1306580:CDS
GTGCAGGTGATTGCTGGTAA+AGG 0.573284 8_4:-1539748 Msa1306580:intron
CTTCTTCACGAAGGCGAGCG+CGG 0.574199 8_4:+1543062 None:intergenic
CTGAACTTGTCCAATCAAGC+AGG 0.575216 8_4:-1539049 Msa1306580:three_prime_UTR
GTTGCTATCTTTGTCATCAG+GGG 0.577328 8_4:+1541276 None:intergenic
TTACAACATTCTTGCTGCTG+TGG 0.577487 8_4:-1541730 Msa1306580:CDS
GGAAGAGGATAGAGATGCGA+AGG 0.577527 8_4:-1542003 Msa1306580:CDS
CCCTCCGCCATCGCACCCGA+CGG 0.579629 8_4:-1543184 Msa1306580:CDS
GATAAGATAAGGGACGGGAA+GGG 0.580788 8_4:+1543227 None:intergenic
CCTGAGTACACAAATGAAGT+AGG 0.583539 8_4:-1539380 Msa1306580:exon
TATTGTTAGAGGGATTGAAG+AGG 0.584456 8_4:-1541673 Msa1306580:CDS
CCAGCAACCTTTGGTATCAG+TGG 0.584490 8_4:+1539432 None:intergenic
CGATGACCGAGAAGAGTGCA+GGG 0.586317 8_4:-1539683 Msa1306580:CDS
AAAGAGAGTTCAAACTTCAA+GGG 0.587138 8_4:+1541831 None:intergenic
TAAGGGATAAGATAAGGGAC+GGG 0.588473 8_4:+1543222 None:intergenic
AATCTTCGCCTACTTCGGGT+GGG 0.589280 8_4:+1543131 None:intergenic
GACGATATGTTGGCTGGGGT+AGG 0.590280 8_4:-1541038 Msa1306580:CDS
TTTGATGGATGAGGAGGACG+AGG 0.591487 8_4:-1542024 Msa1306580:CDS
AGCCTGTGACCATTTGAAAG+AGG 0.592989 8_4:+1540966 None:intergenic
GGGGTTGTCGGATGTCAGCA+TGG 0.593109 8_4:+1541236 None:intergenic
GTAGGCGAAGATTCCGCTCA+CGG 0.594034 8_4:-1543121 Msa1306580:CDS
CGCCTTTGTTCGTTTCAATG+GGG 0.598646 8_4:-1541911 Msa1306580:CDS
TTACAGTGGCATGTAAGCCA+GGG 0.599521 8_4:+1539152 None:intergenic
GCGAGCTTCAGTTGCAATGG+GGG 0.600223 8_4:-1540913 Msa1306580:CDS
TTGAGTGAGGCTGATAAGAG+AGG 0.600487 8_4:-1542479 Msa1306580:CDS
GAAATTTCCAGTATCCCAGC+AGG 0.601448 8_4:+1541780 None:intergenic
TGAAATCTTCTTCTTCACGA+AGG 0.601474 8_4:+1543053 None:intergenic
TACATGGATCTTCACCCTTG+GGG 0.602061 8_4:+1541217 None:intergenic
GTGAACTGAAGAAGAAAGGG+AGG 0.602484 8_4:+1543370 None:intergenic
TGACGAGGAACAAGCATTTG+GGG 0.607098 8_4:-1541619 Msa1306580:CDS
CTCCCCATTGAAACGAACAA+AGG 0.607522 8_4:+1541909 None:intergenic
TTGGATAAAAGCGTACTGCA+TGG 0.607669 8_4:+1539228 None:intergenic
ACTCCCAGCTTTCACATGCA+GGG 0.608356 8_4:-1538976 Msa1306580:three_prime_UTR
GACGACGACCCACCCGAAGT+AGG 0.608809 8_4:-1543139 Msa1306580:CDS
GTAAGGGATAAGATAAGGGA+CGG 0.611786 8_4:+1543221 None:intergenic
TTTGGACGATATGTTGGCTG+GGG 0.620608 8_4:-1541042 Msa1306580:CDS
AGCAATCGAGTTAAACATCC+CGG 0.622878 8_4:+1542232 None:intergenic
CTGTGACCATTTGAAAGAGG+AGG 0.627307 8_4:+1540969 None:intergenic
TCGGCGGAATCAGTGGCGGA+AGG 0.627428 8_4:+1542971 None:intergenic
AGTGATTGGTTGCTGTGGTG+AGG 0.627564 8_4:-1541316 Msa1306580:CDS
CCTCTAACAATATCCTCCAA+GGG 0.631799 8_4:+1541684 None:intergenic
TGCGAGCTTCAGTTGCAATG+GGG 0.637029 8_4:-1540914 Msa1306580:CDS
GGGAGTCGGCGATGGCGGCG+AGG 0.639860 8_4:+1543011 None:intergenic
GCTGTGGTGAGGACGAAAGG+GGG 0.640166 8_4:-1541305 Msa1306580:CDS
TCATAATGGAACTGAATCTG+TGG 0.641742 8_4:-1542123 Msa1306580:CDS
GAAGAAGAAAGGGAGGTGAG+GGG 0.644791 8_4:+1543377 None:intergenic
GCCGAATAAATCGTCTTCGG+CGG 0.645356 8_4:+1542955 None:intergenic
GATTGCTAGTTATGTTCATG+GGG 0.647011 8_4:-1542216 Msa1306580:CDS
TGTTGGTTAATACACCTGCT+GGG 0.653292 8_4:-1541794 Msa1306580:CDS
GTATTTGGTGAAGCCGTGAG+CGG 0.654753 8_4:+1543108 None:intergenic
GTCTTCGGCGGAATCAGTGG+CGG 0.659797 8_4:+1542967 None:intergenic
TGCTGTGGTGAGGACGAAAG+GGG 0.660888 8_4:-1541306 Msa1306580:CDS
GGCTCAGGGGAAATATGATG+AGG 0.665665 8_4:-1542075 Msa1306580:CDS
CAAGGATGGTGGATCCTGAG+CGG 0.668101 8_4:-1541968 Msa1306580:CDS
GCTGACATCCGACAACCCCA+AGG 0.672170 8_4:-1541232 Msa1306580:CDS
TACAGTGGCATGTAAGCCAG+GGG 0.673609 8_4:+1539153 None:intergenic
CAGAGAGCCACTGATACCAA+AGG 0.673622 8_4:-1539439 Msa1306580:CDS
AGGCCCCTATCATAACCGAA+AGG 0.683015 8_4:+1539343 None:intergenic
ACACAGAATTACAATTACAG+TGG 0.694053 8_4:+1539138 None:intergenic
CTGACATCCGACAACCCCAA+GGG 0.697527 8_4:-1541231 Msa1306580:CDS
AGAATCAAGTAATCTAGACA+AGG 0.699983 8_4:+1541566 None:intergenic
AGGTTGATGCAGTTCCTGGG+AGG 0.713356 8_4:-1541653 Msa1306580:CDS
TGGCTCTTATTGGGATAACG+GGG 0.726754 8_4:-1542319 Msa1306580:CDS
ATACCAGTTATAATCCTGCG+AGG 0.748233 8_4:+1541528 None:intergenic
TGACCGAGAAGAGTGCAGGG+AGG 0.749733 8_4:-1539680 Msa1306580:CDS
GAGGTGTGAGTTAATTGACG+AGG 0.756211 8_4:-1541634 Msa1306580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG - chr8_4:1542383-1542402 Msa1306580:CDS 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG - chr8_4:1542383-1542402 Msa1306580:CDS 0.0%
!!! ATTTAGATTTTGATAGTTTA+GGG - chr8_4:1539608-1539627 Msa1306580:intron 15.0%
!! TGAAATTCTGAATATTTATA+GGG + chr8_4:1541595-1541614 None:intergenic 15.0%
!! ATGAAATTCTGAATATTTAT+AGG + chr8_4:1541596-1541615 None:intergenic 15.0%
!!! AAAGTGTAATTTTATTTTGT+AGG - chr8_4:1541725-1541744 Msa1306580:CDS 15.0%
!!! AAGTGTAATTTTATTTTGTA+GGG - chr8_4:1541726-1541745 Msa1306580:CDS 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr8_4:1541756-1541775 Msa1306580:CDS 15.0%
!! CAAAATTCTGAATATTTATA+GGG - chr8_4:1541757-1541776 Msa1306580:CDS 15.0%
!! AAAAAAAAAAAAAGATGAGT+TGG + chr8_4:1542376-1542395 None:intergenic 15.0%
!!! ATATTTTTATATATTTGCCT+AGG + chr8_4:1543225-1543244 None:intergenic 15.0%
!! ACTATCAAAATCTAAATCAA+AGG + chr8_4:1539605-1539624 None:intergenic 20.0%
!!! GATTTAGATTTTGATAGTTT+AGG - chr8_4:1539607-1539626 Msa1306580:intron 20.0%
!! AATTTGGAAGTTGAAATTAA+TGG - chr8_4:1539727-1539746 Msa1306580:CDS 20.0%
!! ATTGATATTGAAGATACTTT+AGG - chr8_4:1539883-1539902 Msa1306580:intron 20.0%
!!! TTTTTGGGTTACTAATTATA+AGG - chr8_4:1540871-1540890 Msa1306580:intron 20.0%
!! GCATAATTAATTATATCGTT+TGG - chr8_4:1540918-1540937 Msa1306580:CDS 20.0%
!!! GTAAAAAGTATGAAAGAATT+AGG + chr8_4:1541231-1541250 None:intergenic 20.0%
!!! ACTTTTTACTTTTTATTCAG+TGG - chr8_4:1541242-1541261 Msa1306580:CDS 20.0%
!!! TTTTTATTCAGTGGATATTT+TGG - chr8_4:1541251-1541270 Msa1306580:CDS 20.0%
!!! TTGCTTAATTTAAACCATTT+TGG - chr8_4:1541515-1541534 Msa1306580:intron 20.0%
!! AATAGGGTTAATTAAGTAAA+TGG - chr8_4:1541568-1541587 Msa1306580:CDS 20.0%
!!! TTTTACGTCAACATTTTTTT+TGG - chr8_4:1541665-1541684 Msa1306580:CDS 20.0%
!!! TATTTTCCTTTAGCATTTTA+GGG + chr8_4:1541692-1541711 None:intergenic 20.0%
!!! ATATTTTCCTTTAGCATTTT+AGG + chr8_4:1541693-1541712 None:intergenic 20.0%
!! AACAAACATAGAATAACTAT+TGG - chr8_4:1542046-1542065 Msa1306580:CDS 20.0%
!! ATATGAATAATAATTGTGGA+TGG + chr8_4:1542072-1542091 None:intergenic 20.0%
!! GTGAATATGAATAATAATTG+TGG + chr8_4:1542076-1542095 None:intergenic 20.0%
!! AATTATTATTCATATTCACG+TGG - chr8_4:1542077-1542096 Msa1306580:CDS 20.0%
!! ATTAAATCTTACTTAGTGAA+TGG - chr8_4:1542281-1542300 Msa1306580:CDS 20.0%
!!! CTTCTTGCATATTAATATTT+TGG + chr8_4:1542487-1542506 None:intergenic 20.0%
!! CAAAATATTAATATGCAAGA+AGG - chr8_4:1542485-1542504 Msa1306580:CDS 20.0%
!!! AAGAAGGAATTGTTTATTTT+TGG - chr8_4:1542501-1542520 Msa1306580:CDS 20.0%
!! TATAGACAAAAATAAAAGGT+TGG + chr8_4:1543105-1543124 None:intergenic 20.0%
!! GCTATATAGACAAAAATAAA+AGG + chr8_4:1543109-1543128 None:intergenic 20.0%
!! GAAGGAAAAAAAAAAAGAAT+TGG + chr8_4:1543131-1543150 None:intergenic 20.0%
!! ATTTCTCATAAAGTTATACA+TGG + chr8_4:1543303-1543322 None:intergenic 20.0%
! ATCTAAATCAAAGGAAGATT+CGG + chr8_4:1539596-1539615 None:intergenic 25.0%
! TGTATTTCTCTTAATTGATG+TGG - chr8_4:1540809-1540828 Msa1306580:intron 25.0%
! AGTTCAAAACAAAATTGAGA+AGG + chr8_4:1540842-1540861 None:intergenic 25.0%
!!! TCTCAATTTTGTTTTGAACT+TGG - chr8_4:1540842-1540861 Msa1306580:intron 25.0%
!!! TTGAACTTGGAGAAATTTTT+TGG - chr8_4:1540855-1540874 Msa1306580:intron 25.0%
!!! TGAACTTGGAGAAATTTTTT+GGG - chr8_4:1540856-1540875 Msa1306580:intron 25.0%
! CTTCAAAAGAAGAAAAAAGA+CGG + chr8_4:1540977-1540996 None:intergenic 25.0%
!!! TTTTCTTCTTTTGAAGTGAT+TGG - chr8_4:1540981-1541000 Msa1306580:CDS 25.0%
! GTTAAGACATTGTGAAATTT+GGG + chr8_4:1541191-1541210 None:intergenic 25.0%
! AGTTAAGACATTGTGAAATT+TGG + chr8_4:1541192-1541211 None:intergenic 25.0%
!!! ATTTAAACCATTTTGGTTCT+TGG - chr8_4:1541522-1541541 Msa1306580:intron 25.0%
!! GTTGACGTAAAATTTTTACA+GGG + chr8_4:1541657-1541676 None:intergenic 25.0%
!! TGTTGACGTAAAATTTTTAC+AGG + chr8_4:1541658-1541677 None:intergenic 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG + chr8_4:1541784-1541803 None:intergenic 25.0%
! CACATCTTAATATTGTTCAA+GGG + chr8_4:1541800-1541819 None:intergenic 25.0%
! ACACATCTTAATATTGTTCA+AGG + chr8_4:1541801-1541820 None:intergenic 25.0%
! TCAAAGTGATATTTCAACTA+AGG - chr8_4:1541822-1541841 Msa1306580:CDS 25.0%
!!! TGTTGTTGCAACTTATTTTA+GGG + chr8_4:1541853-1541872 None:intergenic 25.0%
!!! TTGTTGTTGCAACTTATTTT+AGG + chr8_4:1541854-1541873 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr8_4:1541934-1541953 None:intergenic 25.0%
!! TTCCATTGCTACTTAATTTA+GGG + chr8_4:1541965-1541984 None:intergenic 25.0%
!! TTTCCATTGCTACTTAATTT+AGG + chr8_4:1541966-1541985 None:intergenic 25.0%
! GTTTGACGCATTTAAATTTA+AGG + chr8_4:1542029-1542048 None:intergenic 25.0%
! ATTAGGATTCCAACATTTAA+GGG + chr8_4:1542198-1542217 None:intergenic 25.0%
! TCACTAAGTAAGATTTAATG+AGG + chr8_4:1542280-1542299 None:intergenic 25.0%
!!! TTTTTTTTTGGGTATGAACT+TGG - chr8_4:1542409-1542428 Msa1306580:CDS 25.0%
! CTTCTATTTGATATGTTTCA+TGG + chr8_4:1542589-1542608 None:intergenic 25.0%
! CATGAAACATATCAAATAGA+AGG - chr8_4:1542587-1542606 Msa1306580:CDS 25.0%
!!! TTTTGTTGTCTTTTTATGAC+TGG - chr8_4:1542736-1542755 Msa1306580:CDS 25.0%
!! TACTTGAGAACAACATATTT+TGG - chr8_4:1543389-1543408 Msa1306580:five_prime_UTR 25.0%
TATGTGAACTGAAGAAGAAA+GGG + chr8_4:1538947-1538966 None:intergenic 30.0%
TTATGTGAACTGAAGAAGAA+AGG + chr8_4:1538948-1538967 None:intergenic 30.0%
CACATAATATACAGTCTGAA+TGG - chr8_4:1538961-1538980 Msa1306580:three_prime_UTR 30.0%
!! AATTGAAGAAGGAAGTGTTT+GGG + chr8_4:1539064-1539083 None:intergenic 30.0%
GCTAAACTCATCTTAAACTT+AGG + chr8_4:1539661-1539680 None:intergenic 30.0%
ATGGAATTCAACATGATTCT+AGG - chr8_4:1539746-1539765 Msa1306580:intron 30.0%
! AATTTGTTTGTGTGTTGTGT+TGG - chr8_4:1539784-1539803 Msa1306580:intron 30.0%
!! TGAAGATACTTTAGGTTGTA+AGG - chr8_4:1539891-1539910 Msa1306580:intron 30.0%
TAAGTATCCTTCGAAAAACA+TGG - chr8_4:1539972-1539991 Msa1306580:intron 30.0%
! TAAAAGTATGTATGAAGCGA+TGG - chr8_4:1540047-1540066 Msa1306580:intron 30.0%
! AAAAGTATGTATGAAGCGAT+GGG - chr8_4:1540048-1540067 Msa1306580:intron 30.0%
!!! TGTTTTGGTTCAGAATTTGA+TGG - chr8_4:1540155-1540174 Msa1306580:intron 30.0%
!!! TGCTGTTTTTACGAATTTGA+TGG - chr8_4:1540272-1540291 Msa1306580:intron 30.0%
!! TTTTACGAATTTGATGGATG+AGG - chr8_4:1540278-1540297 Msa1306580:intron 30.0%
AAAGAGAGTTCAAACTTCAA+GGG + chr8_4:1540483-1540502 None:intergenic 30.0%
AGAATCAAGTAATCTAGACA+AGG + chr8_4:1540748-1540767 None:intergenic 30.0%
TTTCTCTTAATTGATGTGGA+AGG - chr8_4:1540813-1540832 Msa1306580:intron 30.0%
AAAAGAAGAAAAAAGACGGT+CGG + chr8_4:1540973-1540992 None:intergenic 30.0%
CCAATGTCAAAATACATACA+TGG + chr8_4:1541113-1541132 None:intergenic 30.0%
!!! CCATGTATGTATTTTGACAT+TGG - chr8_4:1541110-1541129 Msa1306580:intron 30.0%
TTCGTATATTGCTCTTAACA+AGG + chr8_4:1541150-1541169 None:intergenic 30.0%
!! ATGCAAGAGTATCTGAAATA+TGG - chr8_4:1541303-1541322 Msa1306580:CDS 30.0%
AGAAATACCAAGAACCAAAA+TGG + chr8_4:1541532-1541551 None:intergenic 30.0%
! TGCTGACGAAAATTTTTACA+GGG + chr8_4:1541626-1541645 None:intergenic 30.0%
! ATGCTGACGAAAATTTTTAC+AGG + chr8_4:1541627-1541646 None:intergenic 30.0%
ATGCTAAAGGAAAATATCAC+AGG - chr8_4:1541696-1541715 Msa1306580:CDS 30.0%
TGCTAAAGGAAAATATCACA+GGG - chr8_4:1541697-1541716 Msa1306580:CDS 30.0%
CTTAATTTAGGGAAATGTGA+TGG + chr8_4:1541954-1541973 None:intergenic 30.0%
TTCCCTAAATTAAGTAGCAA+TGG - chr8_4:1541960-1541979 Msa1306580:CDS 30.0%
!! TTTGTCAACAGCTTTGAATA+TGG + chr8_4:1541996-1542015 None:intergenic 30.0%
TTCAAAGCTGTTGACAAATT+TGG - chr8_4:1541998-1542017 Msa1306580:CDS 30.0%
GATCTTATGAAGTTACAACT+TGG - chr8_4:1542144-1542163 Msa1306580:CDS 30.0%
TTAGGATTCCAACATTTAAG+GGG + chr8_4:1542197-1542216 None:intergenic 30.0%
GATTAGGATTCCAACATTTA+AGG + chr8_4:1542199-1542218 None:intergenic 30.0%
!! AGGATTAGTTAAAGCTTCAT+AGG + chr8_4:1542246-1542265 None:intergenic 30.0%
TTAATGAGGAAAAAATCGAC+AGG + chr8_4:1542266-1542285 None:intergenic 30.0%
ACTAATCCCCTTAATCATTT+CGG - chr8_4:1542456-1542475 Msa1306580:CDS 30.0%
! TGGAATGTGATTTGTCAATA+AGG - chr8_4:1542521-1542540 Msa1306580:CDS 30.0%
! GGAATGTGATTTGTCAATAA+GGG - chr8_4:1542522-1542541 Msa1306580:CDS 30.0%
TCAAATAGAAGGTGAGAAAA+AGG - chr8_4:1542598-1542617 Msa1306580:CDS 30.0%
TAGATACAAGTGAATTTCCA+TGG - chr8_4:1542690-1542709 Msa1306580:CDS 30.0%
ATGAAGTAGGTCAAAAGAAA+CGG - chr8_4:1542944-1542963 Msa1306580:CDS 30.0%
ATGGAAGTTGCAATTTATGT+TGG + chr8_4:1543067-1543086 None:intergenic 30.0%
ACACAGAATTACAATTACAG+TGG + chr8_4:1543176-1543195 None:intergenic 30.0%
AAGTGTGGAAGAGTAACAAA+TGG + chr8_4:1538992-1539011 None:intergenic 35.0%
! GAATTGGGTTTGATAGTTGT+AGG + chr8_4:1539022-1539041 None:intergenic 35.0%
AGAATGGTGAAGGTTGAATT+GGG + chr8_4:1539037-1539056 None:intergenic 35.0%
TAGAATGGTGAAGGTTGAAT+TGG + chr8_4:1539038-1539057 None:intergenic 35.0%
!!! TTTGGGTTTTAGAATGGTGA+AGG + chr8_4:1539047-1539066 None:intergenic 35.0%
!!! GAAGTGTTTGGGTTTTAGAA+TGG + chr8_4:1539053-1539072 None:intergenic 35.0%
!! GAATTGAAGAAGGAAGTGTT+TGG + chr8_4:1539065-1539084 None:intergenic 35.0%
GGAAGTAAGGGATAAGATAA+GGG + chr8_4:1539097-1539116 None:intergenic 35.0%
AGGAAGTAAGGGATAAGATA+AGG + chr8_4:1539098-1539117 None:intergenic 35.0%
! TTTGGATAGAATTTTCCGTC+GGG + chr8_4:1539145-1539164 None:intergenic 35.0%
! GTTTGGATAGAATTTTCCGT+CGG + chr8_4:1539146-1539165 None:intergenic 35.0%
!! GAGTTGGATTTGTTGGTATT+TGG + chr8_4:1539221-1539240 None:intergenic 35.0%
TGAAATCTTCTTCTTCACGA+AGG + chr8_4:1539261-1539280 None:intergenic 35.0%
AACAGCTTCAATTTCGGATT+TGG + chr8_4:1539452-1539471 None:intergenic 35.0%
CTCTTCAACAGCTTCAATTT+CGG + chr8_4:1539458-1539477 None:intergenic 35.0%
GTGAATTCTGATGAATCTCA+AGG - chr8_4:1539535-1539554 Msa1306580:intron 35.0%
!! CAAGGAGATTTTGAAGAAGA+TGG - chr8_4:1539553-1539572 Msa1306580:intron 35.0%
TGTGTTGGAAGAAAAAACGA+TGG - chr8_4:1539799-1539818 Msa1306580:intron 35.0%
!!! TGGACATATGTTTTTGAGTG+AGG - chr8_4:1539819-1539838 Msa1306580:intron 35.0%
!! TACTTTAGGTTGTAAGGCTT+TGG - chr8_4:1539897-1539916 Msa1306580:intron 35.0%
! TTGTAAGGCTTTGGTTATTG+TGG - chr8_4:1539906-1539925 Msa1306580:intron 35.0%
!! ATAAGAGCCATGTTTTTCGA+AGG + chr8_4:1539982-1540001 None:intergenic 35.0%
TCGAAAAACATGGCTCTTAT+TGG - chr8_4:1539982-1540001 Msa1306580:intron 35.0%
CGAAAAACATGGCTCTTATT+GGG - chr8_4:1539983-1540002 Msa1306580:intron 35.0%
TCGATTGCTAGTTATGTTCA+TGG - chr8_4:1540093-1540112 Msa1306580:intron 35.0%
CGATTGCTAGTTATGTTCAT+GGG - chr8_4:1540094-1540113 Msa1306580:intron 35.0%
GATTGCTAGTTATGTTCATG+GGG - chr8_4:1540095-1540114 Msa1306580:intron 35.0%
AATCAGTTGGATTCGTCTTA+TGG - chr8_4:1540120-1540139 Msa1306580:intron 35.0%
ATCAGTTGGATTCGTCTTAT+GGG - chr8_4:1540121-1540140 Msa1306580:intron 35.0%
ATGGCTAAGATGCTTCATAA+TGG - chr8_4:1540174-1540193 Msa1306580:intron 35.0%
! TCATAATGGAACTGAATCTG+TGG - chr8_4:1540188-1540207 Msa1306580:intron 35.0%
! AACTGAATCTGTGGTTTTTG+AGG - chr8_4:1540197-1540216 Msa1306580:intron 35.0%
CAAAGAGAGTTCAAACTTCA+AGG + chr8_4:1540484-1540503 None:intergenic 35.0%
TATTGTTAGAGGGATTGAAG+AGG - chr8_4:1540638-1540657 Msa1306580:intron 35.0%
TGTTGCTATCTTTGTCATCA+GGG + chr8_4:1541039-1541058 None:intergenic 35.0%
TTCACAATGTCTTAACTAGC+AGG - chr8_4:1541195-1541214 Msa1306580:intron 35.0%
TCACAATGTCTTAACTAGCA+GGG - chr8_4:1541196-1541215 Msa1306580:intron 35.0%
!! GGATATTTTGGACGATATGT+TGG - chr8_4:1541263-1541282 Msa1306580:CDS 35.0%
TACTATCCTCCTCTTTCAAA+TGG - chr8_4:1541336-1541355 Msa1306580:intron 35.0%
! TTTTTCTCCATGACATTAGG+AGG - chr8_4:1541367-1541386 Msa1306580:intron 35.0%
! TTTTCTCCATGACATTAGGA+GGG - chr8_4:1541368-1541387 Msa1306580:intron 35.0%
! TTGGTTCTTGGTATTTCTTG+TGG - chr8_4:1541534-1541553 Msa1306580:CDS 35.0%
TTGTGGAAAAGCTGAACAAT+AGG - chr8_4:1541551-1541570 Msa1306580:CDS 35.0%
TGTGGAAAAGCTGAACAATA+GGG - chr8_4:1541552-1541571 Msa1306580:CDS 35.0%
TTTGGTCCCTAAAATGCTAA+AGG - chr8_4:1541683-1541702 Msa1306580:CDS 35.0%
CTACTTAAACGAGACAGATT+AGG + chr8_4:1542215-1542234 None:intergenic 35.0%
TTAAAGCTTCATAGGAAGCA+AGG + chr8_4:1542238-1542257 None:intergenic 35.0%
GTGATTCCGAAATGATTAAG+GGG + chr8_4:1542465-1542484 None:intergenic 35.0%
GGTGATTCCGAAATGATTAA+GGG + chr8_4:1542466-1542485 None:intergenic 35.0%
TGGTGATTCCGAAATGATTA+AGG + chr8_4:1542467-1542486 None:intergenic 35.0%
ATACAAGTGAATTTCCATGG+CGG - chr8_4:1542693-1542712 Msa1306580:CDS 35.0%
! TTGTCTTTTTATGACTGGCA+TGG - chr8_4:1542741-1542760 Msa1306580:CDS 35.0%
TCTCTTGCATTTATTGTTGC+AGG - chr8_4:1542845-1542864 Msa1306580:CDS 35.0%
TGAAGTAGGTCAAAAGAAAC+GGG - chr8_4:1542945-1542964 Msa1306580:CDS 35.0%
TTGCAATTTATGTTGGACTC+TGG + chr8_4:1543060-1543079 None:intergenic 35.0%
TATATATTTGCCTAGGAAGC+AGG + chr8_4:1543218-1543237 None:intergenic 35.0%
CATAAAGTTATACATGGCGT+TGG + chr8_4:1543297-1543316 None:intergenic 35.0%
! AGTACACTTCTAGGAAAGAT+AGG + chr8_4:1543373-1543392 None:intergenic 35.0%
TTGTTCTCAAGTACACTTCT+AGG + chr8_4:1543382-1543401 None:intergenic 35.0%
GTTGTAGGAGAAATGAAGTG+TGG + chr8_4:1539007-1539026 None:intergenic 40.0%
TAAGGGATAAGATAAGGGAC+GGG + chr8_4:1539092-1539111 None:intergenic 40.0%
GTAAGGGATAAGATAAGGGA+CGG + chr8_4:1539093-1539112 None:intergenic 40.0%
TTCGCCGAATAAATCGTCTT+CGG + chr8_4:1539362-1539381 None:intergenic 40.0%
CGTAAAGAGTTCGTTAAGCA+AGG - chr8_4:1539406-1539425 Msa1306580:CDS 40.0%
AGCTTCAATTTCGGATTTGG+CGG + chr8_4:1539449-1539468 None:intergenic 40.0%
CAGAATTCACAGTGAGTTCA+CGG + chr8_4:1539525-1539544 None:intergenic 40.0%
! GATGAGTTTAGCTGAGCTTT+TGG - chr8_4:1539669-1539688 Msa1306580:CDS 40.0%
! GCTTTTGGATGAGAGTAAAG+TGG - chr8_4:1539684-1539703 Msa1306580:CDS 40.0%
GAGTAAAGTGGTTCCTGTTT+CGG - chr8_4:1539696-1539715 Msa1306580:CDS 40.0%
AAATTCCCGTAAACCGAAAC+AGG + chr8_4:1539712-1539731 None:intergenic 40.0%
TGTTTCGGTTTACGGGAATT+TGG - chr8_4:1539711-1539730 Msa1306580:CDS 40.0%
!! GATTCTAGGCTTGTTACTTC+TGG - chr8_4:1539760-1539779 Msa1306580:intron 40.0%
AAATGCTGTTCTTGCTACGT+TGG - chr8_4:1539936-1539955 Msa1306580:intron 40.0%
CATGGCTCTTATTGGGATAA+CGG - chr8_4:1539990-1540009 Msa1306580:intron 40.0%
ATGGCTCTTATTGGGATAAC+GGG - chr8_4:1539991-1540010 Msa1306580:intron 40.0%
AGCAATCGAGTTAAACATCC+CGG + chr8_4:1540082-1540101 None:intergenic 40.0%
TGTTCATGGGGATAATCAGT+TGG - chr8_4:1540107-1540126 Msa1306580:intron 40.0%
TCAGTTGGATTCGTCTTATG+GGG - chr8_4:1540122-1540141 Msa1306580:intron 40.0%
! TACGAATTTGATGGATGAGG+AGG - chr8_4:1540281-1540300 Msa1306580:intron 40.0%
!! TAAGCTGTTTTCAAGGATGG+TGG - chr8_4:1540332-1540351 Msa1306580:intron 40.0%
ATGTCACAACAGGAACTTCA+GGG + chr8_4:1540428-1540447 None:intergenic 40.0%
AATGTCACAACAGGAACTTC+AGG + chr8_4:1540429-1540448 None:intergenic 40.0%
! ACTCTCTTTGTTTGAGACAC+AGG - chr8_4:1540494-1540513 Msa1306580:intron 40.0%
! TTTGTTTGAGACACAGGTGT+TGG - chr8_4:1540500-1540519 Msa1306580:intron 40.0%
! TGTTGGTTAATACACCTGCT+GGG - chr8_4:1540517-1540536 Msa1306580:intron 40.0%
GAAATTTCGTCCGGTTTACT+AGG - chr8_4:1540546-1540565 Msa1306580:intron 40.0%
ATTGTGCCTTCCTAGTAAAC+CGG + chr8_4:1540559-1540578 None:intergenic 40.0%
TTACAACATTCTTGCTGCTG+TGG - chr8_4:1540581-1540600 Msa1306580:intron 40.0%
CCTCTAACAATATCCTCCAA+GGG + chr8_4:1540630-1540649 None:intergenic 40.0%
CCTTGGAGGATATTGTTAGA+GGG - chr8_4:1540628-1540647 Msa1306580:intron 40.0%
ATTGACGAGGAACAAGCATT+TGG - chr8_4:1540690-1540709 Msa1306580:intron 40.0%
TTGACGAGGAACAAGCATTT+GGG - chr8_4:1540691-1540710 Msa1306580:intron 40.0%
! AGTAATCTAGACAAGGCATC+AGG + chr8_4:1540741-1540760 None:intergenic 40.0%
ATACCAGTTATAATCCTGCG+AGG + chr8_4:1540786-1540805 None:intergenic 40.0%
! TTTGAAGTGATTGGTTGCTG+TGG - chr8_4:1540990-1541009 Msa1306580:CDS 40.0%
GTTGCTATCTTTGTCATCAG+GGG + chr8_4:1541038-1541057 None:intergenic 40.0%
CTGTTGCTATCTTTGTCATC+AGG + chr8_4:1541040-1541059 None:intergenic 40.0%
ATACATGGATCTTCACCCTT+GGG + chr8_4:1541098-1541117 None:intergenic 40.0%
! ATTTTGGACGATATGTTGGC+TGG - chr8_4:1541267-1541286 Msa1306580:CDS 40.0%
!! TTTTGGACGATATGTTGGCT+GGG - chr8_4:1541268-1541287 Msa1306580:CDS 40.0%
!! GGCTTTTTCTCCATGACATT+AGG - chr8_4:1541364-1541383 Msa1306580:intron 40.0%
TCATCCATGAAACTGAACGT+TGG + chr8_4:1542115-1542134 None:intergenic 40.0%
! TCCAACATTTAAGGGGTACA+GGG + chr8_4:1542190-1542209 None:intergenic 40.0%
! TTCCAACATTTAAGGGGTAC+AGG + chr8_4:1542191-1542210 None:intergenic 40.0%
TTTGACTGTCAGTCTACACT+TGG - chr8_4:1542349-1542368 Msa1306580:CDS 40.0%
! AGGGTACACTTTTATGTGCA+TGG - chr8_4:1542541-1542560 Msa1306580:CDS 40.0%
AACATTTGACATTACCGCCA+TGG + chr8_4:1542710-1542729 None:intergenic 40.0%
ATTTGTGTACTCAGGTGAAC+AGG + chr8_4:1542926-1542945 None:intergenic 40.0%
CCTACTTCATTTGTGTACTC+AGG + chr8_4:1542934-1542953 None:intergenic 40.0%
CCTGAGTACACAAATGAAGT+AGG - chr8_4:1542931-1542950 Msa1306580:CDS 40.0%
GGAATCAATCTGGTGAAGAT+GGG - chr8_4:1543008-1543027 Msa1306580:CDS 40.0%
! TTGGATAAAAGCGTACTGCA+TGG + chr8_4:1543086-1543105 None:intergenic 40.0%
! TTTTCCTTCCTTTTTTCCCC+TGG - chr8_4:1543142-1543161 Msa1306580:CDS 40.0%
GATAATCTAGCCTGCTTGAT+TGG + chr8_4:1543275-1543294 None:intergenic 40.0%
TGAAGAAGAAAGGGAGGTGA+GGG + chr8_4:1538938-1538957 None:intergenic 45.0%
GTGAACTGAAGAAGAAAGGG+AGG + chr8_4:1538944-1538963 None:intergenic 45.0%
GATAAGATAAGGGACGGGAA+GGG + chr8_4:1539087-1539106 None:intergenic 45.0%
TCCGCCGAAGACGATTTATT+CGG - chr8_4:1539355-1539374 Msa1306580:three_prime_UTR 45.0%
ATTTCGGATTTGGCGGGATT+AGG + chr8_4:1539442-1539461 None:intergenic 45.0%
GCTTCAATTTCGGATTTGGC+GGG + chr8_4:1539448-1539467 None:intergenic 45.0%
!! TCTACATCGTCGACTTCATC+AGG + chr8_4:1539487-1539506 None:intergenic 45.0%
GTGGTTCCTGTTTCGGTTTA+CGG - chr8_4:1539703-1539722 Msa1306580:CDS 45.0%
TGGTTCCTGTTTCGGTTTAC+GGG - chr8_4:1539704-1539723 Msa1306580:CDS 45.0%
TTGAGTGAGGCTGATAAGAG+AGG - chr8_4:1539832-1539851 Msa1306580:intron 45.0%
TGGCTCTTATTGGGATAACG+GGG - chr8_4:1539992-1540011 Msa1306580:intron 45.0%
!! ATTGGGATAACGGGGACTTA+TGG - chr8_4:1540000-1540019 Msa1306580:intron 45.0%
!! CGAAGGCTAAGCTGTTTTCA+AGG - chr8_4:1540325-1540344 Msa1306580:intron 45.0%
!! GGCTAAGCTGTTTTCAAGGA+TGG - chr8_4:1540329-1540348 Msa1306580:intron 45.0%
TGCGCCTTTGTTCGTTTCAA+TGG - chr8_4:1540398-1540417 Msa1306580:intron 45.0%
GCGCCTTTGTTCGTTTCAAT+GGG - chr8_4:1540399-1540418 Msa1306580:intron 45.0%
CGCCTTTGTTCGTTTCAATG+GGG - chr8_4:1540400-1540419 Msa1306580:intron 45.0%
CTCCCCATTGAAACGAACAA+AGG + chr8_4:1540405-1540424 None:intergenic 45.0%
TCCTGTTGTGACATTTGCGT+TGG - chr8_4:1540434-1540453 Msa1306580:intron 45.0%
TCCAACGCAAATGTCACAAC+AGG + chr8_4:1540438-1540457 None:intergenic 45.0%
!! GTGTTGGTTAATACACCTGC+TGG - chr8_4:1540516-1540535 Msa1306580:intron 45.0%
TAATACACCTGCTGGGATAC+TGG - chr8_4:1540524-1540543 Msa1306580:intron 45.0%
GAAATTTCCAGTATCCCAGC+AGG + chr8_4:1540534-1540553 None:intergenic 45.0%
GGGATACTGGAAATTTCGTC+CGG - chr8_4:1540537-1540556 Msa1306580:intron 45.0%
TTTCGTCCGGTTTACTAGGA+AGG - chr8_4:1540550-1540569 Msa1306580:intron 45.0%
CCCTTGGAGGATATTGTTAG+AGG - chr8_4:1540627-1540646 Msa1306580:intron 45.0%
CCCTCTAACAATATCCTCCA+AGG + chr8_4:1540631-1540650 None:intergenic 45.0%
!! AAGAGGTTGATGCAGTTCCT+GGG - chr8_4:1540655-1540674 Msa1306580:intron 45.0%
TCAATTAACTCACACCTCCC+AGG + chr8_4:1540675-1540694 None:intergenic 45.0%
GAGGTGTGAGTTAATTGACG+AGG - chr8_4:1540677-1540696 Msa1306580:intron 45.0%
TGACGAGGAACAAGCATTTG+GGG - chr8_4:1540692-1540711 Msa1306580:intron 45.0%
! ACAAGCATTTGGGGTCATAG+TGG - chr8_4:1540701-1540720 Msa1306580:intron 45.0%
CAACCTCGCAGGATTATAAC+TGG - chr8_4:1540780-1540799 Msa1306580:intron 45.0%
TACATGGATCTTCACCCTTG+GGG + chr8_4:1541097-1541116 None:intergenic 45.0%
CATACATGGATCTTCACCCT+TGG + chr8_4:1541099-1541118 None:intergenic 45.0%
! TTTGGACGATATGTTGGCTG+GGG - chr8_4:1541269-1541288 Msa1306580:CDS 45.0%
CTGTGACCATTTGAAAGAGG+AGG + chr8_4:1541345-1541364 None:intergenic 45.0%
CTCCTCTTTCAAATGGTCAC+AGG - chr8_4:1541343-1541362 Msa1306580:intron 45.0%
AGCCTGTGACCATTTGAAAG+AGG + chr8_4:1541348-1541367 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_4:1541884-1541903 Msa1306580:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_4:1541885-1541904 Msa1306580:CDS 45.0%
TCCACCAACGTTCAGTTTCA+TGG - chr8_4:1542108-1542127 Msa1306580:CDS 45.0%
TCCATGAAACTGAACGTTGG+TGG + chr8_4:1542112-1542131 None:intergenic 45.0%
ACAGGGAAGTCAGCTTATCA+TGG + chr8_4:1542173-1542192 None:intergenic 45.0%
TCCCTGTACCCCTTAAATGT+TGG - chr8_4:1542186-1542205 Msa1306580:CDS 45.0%
! CACTTTTATGTGCATGGTGC+AGG - chr8_4:1542547-1542566 Msa1306580:CDS 45.0%
CACTGATACCAAAGGTTGCT+GGG - chr8_4:1542880-1542899 Msa1306580:CDS 45.0%
ATTGTTAGCCCAGCAACCTT+TGG + chr8_4:1542891-1542910 None:intergenic 45.0%
GTCAAAAGAAACGGGCCTTT+CGG - chr8_4:1542953-1542972 Msa1306580:CDS 45.0%
CGGAATCAATCTGGTGAAGA+TGG - chr8_4:1543007-1543026 Msa1306580:CDS 45.0%
TAAGCCAGGGGAAAAAAGGA+AGG + chr8_4:1543149-1543168 None:intergenic 45.0%
CATGTAAGCCAGGGGAAAAA+AGG + chr8_4:1543153-1543172 None:intergenic 45.0%
TTACAGTGGCATGTAAGCCA+GGG + chr8_4:1543162-1543181 None:intergenic 45.0%
ATTACAGTGGCATGTAAGCC+AGG + chr8_4:1543163-1543182 None:intergenic 45.0%
CTGAACTTGTCCAATCAAGC+AGG - chr8_4:1543262-1543281 Msa1306580:CDS 45.0%
AATCCCTGCATGTGAAAGCT+GGG + chr8_4:1543341-1543360 None:intergenic 45.0%
AAATCCCTGCATGTGAAAGC+TGG + chr8_4:1543342-1543361 None:intergenic 45.0%
! CACTTCTAGGAAAGATAGGC+TGG + chr8_4:1543369-1543388 None:intergenic 45.0%
GAAGAAGAAAGGGAGGTGAG+GGG + chr8_4:1538937-1538956 None:intergenic 50.0%
CTGAAGAAGAAAGGGAGGTG+AGG + chr8_4:1538939-1538958 None:intergenic 50.0%
GACGGGAAGGGAATTGAAGA+AGG + chr8_4:1539075-1539094 None:intergenic 50.0%
GGATAAGATAAGGGACGGGA+AGG + chr8_4:1539088-1539107 None:intergenic 50.0%
AATCTTCGCCTACTTCGGGT+GGG + chr8_4:1539183-1539202 None:intergenic 50.0%
AGCGGAATCTTCGCCTACTT+CGG + chr8_4:1539188-1539207 None:intergenic 50.0%
! GTATTTGGTGAAGCCGTGAG+CGG + chr8_4:1539206-1539225 None:intergenic 50.0%
! CGGCTTGGAGTTGGATTTGT+TGG + chr8_4:1539228-1539247 None:intergenic 50.0%
GCCGAATAAATCGTCTTCGG+CGG + chr8_4:1539359-1539378 None:intergenic 50.0%
! GAAGCGATGGGTTTACGTAC+CGG - chr8_4:1540060-1540079 Msa1306580:intron 50.0%
! AAGCGATGGGTTTACGTACC+GGG - chr8_4:1540061-1540080 Msa1306580:intron 50.0%
GGATTCGTCTTATGGGGTTC+TGG - chr8_4:1540128-1540147 Msa1306580:intron 50.0%
!!! TGGGGTTCTGGATGCTGTTT+TGG - chr8_4:1540140-1540159 Msa1306580:intron 50.0%
!!! GTTTTTGAGGCTTCTTCGCG+CGG - chr8_4:1540210-1540229 Msa1306580:intron 50.0%
GGCTCAGGGGAAATATGATG+AGG - chr8_4:1540236-1540255 Msa1306580:intron 50.0%
! TTTGATGGATGAGGAGGACG+AGG - chr8_4:1540287-1540306 Msa1306580:intron 50.0%
GGAAGAGGATAGAGATGCGA+AGG - chr8_4:1540308-1540327 Msa1306580:intron 50.0%
ACAACTTTCCTATGCCGCTC+AGG + chr8_4:1540360-1540379 None:intergenic 50.0%
! GAAACGAACAAAGGCGCACT+TGG + chr8_4:1540396-1540415 None:intergenic 50.0%
ATTCTTGCTGCTGTGGCAGT+TGG - chr8_4:1540588-1540607 Msa1306580:intron 50.0%
! TGGCAGTTGGCATTGCTGTT+GGG - chr8_4:1540601-1540620 Msa1306580:intron 50.0%
!! GAAGAGGTTGATGCAGTTCC+TGG - chr8_4:1540654-1540673 Msa1306580:intron 50.0%
!! GGGTCATAGTGGACTATGCT+CGG - chr8_4:1540712-1540731 Msa1306580:intron 50.0%
TAAGAGAGCTTCAACCTCGC+AGG - chr8_4:1540769-1540788 Msa1306580:intron 50.0%
! AGTGATTGGTTGCTGTGGTG+AGG - chr8_4:1540995-1541014 Msa1306580:CDS 50.0%
TTGCTGTGGTGAGGACGAAA+GGG - chr8_4:1541004-1541023 Msa1306580:CDS 50.0%
ATCTTCACCCTTGGGGTTGT+CGG + chr8_4:1541090-1541109 None:intergenic 50.0%
! ATATGTTGGCTGGGGTAGGA+TGG - chr8_4:1541277-1541296 Msa1306580:CDS 50.0%
CAGCTACCCTCCTAATGTCA+TGG + chr8_4:1541377-1541396 None:intergenic 50.0%
TGTGCGAGCTTCAGTTGCAA+TGG - chr8_4:1541395-1541414 Msa1306580:intron 50.0%
GTGCGAGCTTCAGTTGCAAT+GGG - chr8_4:1541396-1541415 Msa1306580:intron 50.0%
TGCGAGCTTCAGTTGCAATG+GGG - chr8_4:1541397-1541416 Msa1306580:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_4:1541886-1541905 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_4:1541883-1541902 Msa1306580:CDS 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr8_4:1541891-1541910 None:intergenic 50.0%
TGAAGCTGACCCCACTTAGT+GGG + chr8_4:1541897-1541916 None:intergenic 50.0%
ATGAAGCTGACCCCACTTAG+TGG + chr8_4:1541898-1541917 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTTCA+TGG - chr8_4:1541897-1541916 Msa1306580:CDS 50.0%
GTGCAGGTGATTGCTGGTAA+AGG - chr8_4:1542563-1542582 Msa1306580:CDS 50.0%
GTTGACGAGCTTCATCAAGC+TGG - chr8_4:1542665-1542684 Msa1306580:CDS 50.0%
CTTTGGTATCAGTGGCTCTC+TGG + chr8_4:1542874-1542893 None:intergenic 50.0%
CAGAGAGCCACTGATACCAA+AGG - chr8_4:1542872-1542891 Msa1306580:CDS 50.0%
CCAGCAACCTTTGGTATCAG+TGG + chr8_4:1542882-1542901 None:intergenic 50.0%
CCACTGATACCAAAGGTTGC+TGG - chr8_4:1542879-1542898 Msa1306580:CDS 50.0%
ACGGGCCTTTCGGTTATGAT+AGG - chr8_4:1542963-1542982 Msa1306580:CDS 50.0%
CGGGCCTTTCGGTTATGATA+GGG - chr8_4:1542964-1542983 Msa1306580:CDS 50.0%
GGGCCTTTCGGTTATGATAG+GGG - chr8_4:1542965-1542984 Msa1306580:CDS 50.0%
AGGCCCCTATCATAACCGAA+AGG + chr8_4:1542971-1542990 None:intergenic 50.0%
TGATAGGGGCCTTTCTTTGC+AGG - chr8_4:1542979-1542998 Msa1306580:CDS 50.0%
! GCCTTTCTTTGCAGGAGCAT+CGG - chr8_4:1542987-1543006 Msa1306580:CDS 50.0%
TCCGATGCTCCTGCAAAGAA+AGG + chr8_4:1542991-1543010 None:intergenic 50.0%
!! CAGGAGCATCGGAATCAATC+TGG - chr8_4:1542998-1543017 Msa1306580:CDS 50.0%
TACAGTGGCATGTAAGCCAG+GGG + chr8_4:1543161-1543180 None:intergenic 50.0%
TACTCCCAGCTTTCACATGC+AGG - chr8_4:1543334-1543353 Msa1306580:CDS 50.0%
ACTCCCAGCTTTCACATGCA+GGG - chr8_4:1543335-1543354 Msa1306580:exon 50.0%
GGAGGTGAGGGGTTTGTATG+GGG + chr8_4:1538926-1538945 None:intergenic 55.0%
GGGAGGTGAGGGGTTTGTAT+GGG + chr8_4:1538927-1538946 None:intergenic 55.0%
AGGGAGGTGAGGGGTTTGTA+TGG + chr8_4:1538928-1538947 None:intergenic 55.0%
! GAATTTTCCGTCGGGTGCGA+TGG + chr8_4:1539137-1539156 None:intergenic 55.0%
GAATCTTCGCCTACTTCGGG+TGG + chr8_4:1539184-1539203 None:intergenic 55.0%
GCGGAATCTTCGCCTACTTC+GGG + chr8_4:1539187-1539206 None:intergenic 55.0%
GTAGGCGAAGATTCCGCTCA+CGG - chr8_4:1539190-1539209 Msa1306580:three_prime_UTR 55.0%
! ATCAGTGGCGGAAGGTTCGT+CGG + chr8_4:1539335-1539354 None:intergenic 55.0%
ATCGTCTTCGGCGGAATCAG+TGG + chr8_4:1539350-1539369 None:intergenic 55.0%
!! CAAGGATGGTGGATCCTGAG+CGG - chr8_4:1540343-1540362 Msa1306580:intron 55.0%
GTGGCAGTTGGCATTGCTGT+TGG - chr8_4:1540600-1540619 Msa1306580:intron 55.0%
! GGCAGTTGGCATTGCTGTTG+GGG - chr8_4:1540602-1540621 Msa1306580:intron 55.0%
!! AGGTTGATGCAGTTCCTGGG+AGG - chr8_4:1540658-1540677 Msa1306580:intron 55.0%
GTTGCTGTGGTGAGGACGAA+AGG - chr8_4:1541003-1541022 Msa1306580:CDS 55.0%
TGCTGTGGTGAGGACGAAAG+GGG - chr8_4:1541005-1541024 Msa1306580:CDS 55.0%
CTGACATCCGACAACCCCAA+GGG - chr8_4:1541080-1541099 Msa1306580:intron 55.0%
! GACGATATGTTGGCTGGGGT+AGG - chr8_4:1541273-1541292 Msa1306580:CDS 55.0%
GCGAGCTTCAGTTGCAATGG+GGG - chr8_4:1541398-1541417 Msa1306580:intron 55.0%
AGCTTCAGTTGCAATGGGGG+AGG - chr8_4:1541401-1541420 Msa1306580:intron 55.0%
TTCAGTTGCAATGGGGGAGG+AGG - chr8_4:1541404-1541423 Msa1306580:intron 55.0%
TCAGTTGCAATGGGGGAGGA+GGG - chr8_4:1541405-1541424 Msa1306580:intron 55.0%
GTCTCTACAGTTGCGCGCAA+AGG + chr8_4:1542438-1542457 None:intergenic 55.0%
TGCATGGTGCAGGTGATTGC+TGG - chr8_4:1542557-1542576 Msa1306580:CDS 55.0%
! TCGATGACCGAGAAGAGTGC+AGG - chr8_4:1542627-1542646 Msa1306580:CDS 55.0%
! CGATGACCGAGAAGAGTGCA+GGG - chr8_4:1542628-1542647 Msa1306580:CDS 55.0%
AAGCCTCCCTGCACTCTTCT+CGG + chr8_4:1542637-1542656 None:intergenic 55.0%
ACACGCTAGTCCTGCTTCCT+AGG - chr8_4:1543205-1543224 Msa1306580:CDS 55.0%
GGAGGGCGGAGAGGAAGTAA+GGG + chr8_4:1539109-1539128 None:intergenic 60.0%
! TTTTCCGTCGGGTGCGATGG+CGG + chr8_4:1539134-1539153 None:intergenic 60.0%
CTTCTTCACGAAGGCGAGCG+CGG + chr8_4:1539252-1539271 None:intergenic 60.0%
!! AGGTTCGTCGGGAGCGTCTT+GGG + chr8_4:1539323-1539342 None:intergenic 60.0%
!! AAGGTTCGTCGGGAGCGTCT+TGG + chr8_4:1539324-1539343 None:intergenic 60.0%
! TCAGTGGCGGAAGGTTCGTC+GGG + chr8_4:1539334-1539353 None:intergenic 60.0%
GTCTTCGGCGGAATCAGTGG+CGG + chr8_4:1539347-1539366 None:intergenic 60.0%
TGAGGCTTCTTCGCGCGGAT+TGG - chr8_4:1540215-1540234 Msa1306580:intron 60.0%
!! TTCTTCGCGCGGATTGGCTC+AGG - chr8_4:1540221-1540240 Msa1306580:intron 60.0%
!! TCTTCGCGCGGATTGGCTCA+GGG - chr8_4:1540222-1540241 Msa1306580:intron 60.0%
GGATGAGGAGGACGAGGAAG+AGG - chr8_4:1540293-1540312 Msa1306580:intron 60.0%
! TGGTGGATCCTGAGCGGCAT+AGG - chr8_4:1540349-1540368 Msa1306580:intron 60.0%
! CATTGCTGTTGGGGCACCCT+TGG - chr8_4:1540611-1540630 Msa1306580:intron 60.0%
GCTGTGGTGAGGACGAAAGG+GGG - chr8_4:1541006-1541025 Msa1306580:CDS 60.0%
GGGGTTGTCGGATGTCAGCA+TGG + chr8_4:1541078-1541097 None:intergenic 60.0%
GCTGACATCCGACAACCCCA+AGG - chr8_4:1541079-1541098 Msa1306580:intron 60.0%
! TGACCGAGAAGAGTGCAGGG+AGG - chr8_4:1542631-1542650 Msa1306580:CDS 60.0%
GGGAGGGCGGAGAGGAAGTA+AGG + chr8_4:1539110-1539129 None:intergenic 65.0%
GGGTCGTCGTCAGCTGGGTT+TGG + chr8_4:1539163-1539182 None:intergenic 65.0%
GACGACGACCCACCCGAAGT+AGG - chr8_4:1539172-1539191 Msa1306580:three_prime_UTR 65.0%
TTCACGAAGGCGAGCGCGGT+CGG + chr8_4:1539248-1539267 None:intergenic 65.0%
GTCTTGGGAGTCGGCGATGG+CGG + chr8_4:1539308-1539327 None:intergenic 65.0%
AGCGTCTTGGGAGTCGGCGA+TGG + chr8_4:1539311-1539330 None:intergenic 65.0%
!! GTCGGGAGCGTCTTGGGAGT+CGG + chr8_4:1539317-1539336 None:intergenic 65.0%
! TCGGCGGAATCAGTGGCGGA+AGG + chr8_4:1539343-1539362 None:intergenic 65.0%
!! CTTCGCGCGGATTGGCTCAG+GGG - chr8_4:1540223-1540242 Msa1306580:intron 65.0%
! TGCTGTTGGGGCACCCTTGG+AGG - chr8_4:1540614-1540633 Msa1306580:intron 65.0%
CGGGTGGGTCGTCGTCAGCT+GGG + chr8_4:1539168-1539187 None:intergenic 70.0%
TCGGGTGGGTCGTCGTCAGC+TGG + chr8_4:1539169-1539188 None:intergenic 70.0%
!! GAGCGCGGTCGGCTTGGAGT+TGG + chr8_4:1539237-1539256 None:intergenic 70.0%
! GGCGATGGCGGCGAGGTAAG+TGG + chr8_4:1539296-1539315 None:intergenic 70.0%
! ATGGCGGAGGGAGGGCGGAG+AGG + chr8_4:1539118-1539137 None:intergenic 75.0%
!! GTGCGATGGCGGAGGGAGGG+CGG + chr8_4:1539123-1539142 None:intergenic 75.0%
!! CGGGTGCGATGGCGGAGGGA+GGG + chr8_4:1539126-1539145 None:intergenic 75.0%
!! TCGGGTGCGATGGCGGAGGG+AGG + chr8_4:1539127-1539146 None:intergenic 75.0%
!! CCGTCGGGTGCGATGGCGGA+GGG + chr8_4:1539130-1539149 None:intergenic 75.0%
CCCTCCGCCATCGCACCCGA+CGG - chr8_4:1539127-1539146 Msa1306580:three_prime_UTR 75.0%
! TCCGTCGGGTGCGATGGCGG+AGG + chr8_4:1539131-1539150 None:intergenic 75.0%
GAAGGCGAGCGCGGTCGGCT+TGG + chr8_4:1539243-1539262 None:intergenic 75.0%
!! GGGAGTCGGCGATGGCGGCG+AGG + chr8_4:1539303-1539322 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1538912 1543421 1538912 ID=Msa1306580;Name=Msa1306580
chr8_4 mRNA 1538912 1543421 1538912 ID=Msa1306580-mRNA-1;Parent=Msa1306580;Name=Msa1306580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=68|0.75|0.8|1|1|1|5|469|776
chr8_4 exon 1538912 1539466 1538912 ID=Msa1306580-mRNA-1:exon:418;Parent=Msa1306580-mRNA-1
chr8_4 exon 1539635 1539764 1539635 ID=Msa1306580-mRNA-1:exon:417;Parent=Msa1306580-mRNA-1
chr8_4 exon 1540896 1541071 1540896 ID=Msa1306580-mRNA-1:exon:416;Parent=Msa1306580-mRNA-1
chr8_4 exon 1541220 1541336 1541220 ID=Msa1306580-mRNA-1:exon:415;Parent=Msa1306580-mRNA-1
chr8_4 exon 1541532 1543421 1541532 ID=Msa1306580-mRNA-1:exon:414;Parent=Msa1306580-mRNA-1
chr8_4 five_prime_UTR 1543354 1543421 1543354 ID=Msa1306580-mRNA-1:five_prime_utr;Parent=Msa1306580-mRNA-1
chr8_4 CDS 1541532 1543353 1541532 ID=Msa1306580-mRNA-1:cds;Parent=Msa1306580-mRNA-1
chr8_4 CDS 1541220 1541336 1541220 ID=Msa1306580-mRNA-1:cds;Parent=Msa1306580-mRNA-1
chr8_4 CDS 1540896 1541071 1540896 ID=Msa1306580-mRNA-1:cds;Parent=Msa1306580-mRNA-1
chr8_4 CDS 1539635 1539764 1539635 ID=Msa1306580-mRNA-1:cds;Parent=Msa1306580-mRNA-1
chr8_4 CDS 1539381 1539466 1539381 ID=Msa1306580-mRNA-1:cds;Parent=Msa1306580-mRNA-1
chr8_4 three_prime_UTR 1538912 1539380 1538912 ID=Msa1306580-mRNA-1:three_prime_utr;Parent=Msa1306580-mRNA-1
Gene Sequence

>Msa1306580

ATGGCTTTGCCATTTGTTACTCTTCCACACTTCATTTCTCCTACAACTATCAAACCCAATTCAACCTTCACCATTCTAAAACCCAAACACTTCCTTCTTCAATTCCCTTCCCGTCCCTTATCTTATCCCTTACTTCCTCTCCGCCCTCCCTCCGCCATCGCACCCGACGGAAAATTCTATCCAAACCCAGCTGACGACGACCCACCCGAAGTAGGCGAAGATTCCGCTCACGGCTTCACCAAATACCAACAAATCCAACTCCAAGCCGACCGCGCTCGCCTTCGTGAAGAAGAAGATTTCAAAAACAATCAAGCCACTTACCTCGCCGCCATCGCCGACTCCCAAGACGCTCCCGACGAACCTTCCGCCACTGATTCCGCCGAAGACGATTTATTCGGCGAAATAGATAAAGCTATCGCTCTTAAACGTAAAGAGTTCGTTAAGCAAGGTCTTCTTAAACCTAATCCCGCCAAATCCGAAATTGAAGCTGTTGAAGAGCTTCAACCTGATGAAGTCGACGATGTAGAAGAAATTGAACGTCTCCGTGAACTCACTGTGAATTCTGATGAATCTCAAGGAGATTTTGAAGAAGATGGTGATTTATCTTTGAAATCCGAATCTTCCTTTGATTTAGATTTTGATAGTTTAGGGAAAAGTAATAAAGCTAGAATTGTTGAACCTAAGTTTAAGATGAGTTTAGCTGAGCTTTTGGATGAGAGTAAAGTGGTTCCTGTTTCGGTTTACGGGAATTTGGAAGTTGAAATTAATGGAATTCAACATGATTCTAGGCTTGTTACTTCTGGTAATTTGTTTGTGTGTTGTGTTGGAAGAAAAAACGATGGACATATGTTTTTGAGTGAGGCTGATAAGAGAGGTGCTATTGCTGTTGTAGCGAGTAAAGAGATTGATATTGAAGATACTTTAGGTTGTAAGGCTTTGGTTATTGTGGAAGATACAAATGCTGTTCTTGCTACGTTGGCTGCGTCGTTTTATAAGTATCCTTCGAAAAACATGGCTCTTATTGGGATAACGGGGACTTATGGTAAGACAACGACGACTTATTTGATTAAAAGTATGTATGAAGCGATGGGTTTACGTACCGGGATGTTTAACTCGATTGCTAGTTATGTTCATGGGGATAATCAGTTGGATTCGTCTTATGGGGTTCTGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGAATCTGTGGTTTTTGAGGCTTCTTCGCGCGGATTGGCTCAGGGGAAATATGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGATGGATGAGGAGGACGAGGAAGAGGATAGAGATGCGAAGGCTAAGCTGTTTTCAAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATTGACGATCCAAGTGCGCCTTTGTTCGTTTCAATGGGGAGCCCTGAAGTTCCTGTTGTGACATTTGCGTTGGAGAATAAGAATGCAGATGTTCATCCCTTGAAGTTTGAACTCTCTTTGTTTGAGACACAGGTGTTGGTTAATACACCTGCTGGGATACTGGAAATTTCGTCCGGTTTACTAGGAAGGCACAATGTTTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGGATATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTAATTGACGAGGAACAAGCATTTGGGGTCATAGTGGACTATGCTCGGACTCCTGATGCCTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACTGTGATTGGTTGCTGTGGTGAGGACGAAAGGGGGAAGAGACCCCTGATGACAAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCCGACAACCCCAAGGGTGAAGATCCATTGGATATTTTGGACGATATGTTGGCTGGGGTAGGATGGACAATGCAAGAGTATCTGAAATATGGAGAGAATGACTACTATCCTCCTCTTTCAAATGGTCACAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTTCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGTAAAGGCCATGAAACATATCAAATAGAAGGTGAGAAAAAGGATTTCTTCGATGACCGAGAAGAGTGCAGGGAGGCTTTGCAGTATGTTGACGAGCTTCATCAAGCTGGAATAGATACAAGTTACCAGAGAGCCACTGATACCAAAGGTTGCTGGGCTAACAATAGATCAGCTTCACCTGTTCACCTGAGTACACAAATGAAGTAG
Protein sequence

>Msa1306580

MALPFVTLPHFISPTTIKPNSTFTILKPKHFLLQFPSRPLSYPLLPLRPPSAIAPDGKFYPNPADDDPPEVGEDSAHGFTKYQQIQLQADRARLREEEDFKNNQATYLAAIADSQDAPDEPSATDSAEDDLFGEIDKAIALKRKEFVKQGLLKPNPAKSEIEAVEELQPDEVDDVEEIERLRELTVNSDESQGDFEEDGDLSLKSESSFDLDFDSLGKSNKARIVEPKFKMSLAELLDESKVVPVSVYGNLEVEINGIQHDSRLVTSGNLFVCCVGRKNDGHMFLSEADKRGAIAVVASKEIDIEDTLGCKALVIVEDTNAVLATLAASFYKYPSKNMALIGITGTYGKTTTTYLIKSMYEAMGLRTGMFNSIASYVHGDNQLDSSYGVLDAVLVQNLMAKMLHNGTESVVFEASSRGLAQGKYDEVDFDVAVFTNLMDEEDEEEDRDAKAKLFSRMVDPERHRKVVNIDDPSAPLFVSMGSPEVPVVTFALENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGRHNVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGCCGEDERGKRPLMTKIATDKSEVTMLTSDNPKGEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLSNGHRLFLHDIRRVAVRASVAMGEEGDVVVIAGKGHETYQIEGEKKDFFDDREECREALQYVDELHQAGIDTSYQRATDTKGCWANNRSASPVHLSTQMK*