AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547780 MtrunA17_Chr4g0030581 94.976 418 20 1 421 837 55 472 0.0 791
Msa0547780 MtrunA17_Chr4g0030581 78.178 472 54 5 1 423 1 472 0.0 729
Msa0547780 MtrunA17_Chr4g0030591 85.412 473 19 5 1 423 1 473 0.0 779
Msa0547780 MtrunA17_Chr4g0030591 84.248 419 64 1 421 837 55 473 0.0 714
Msa0547780 MtrunA17_Chr4g0030601 87.981 416 43 1 422 837 56 464 0.0 760
Msa0547780 MtrunA17_Chr4g0030601 78.326 466 56 5 1 423 1 464 0.0 737
Msa0547780 MtrunA17_Chr2g0327721 71.602 412 111 3 426 832 60 470 0.0 622
Msa0547780 MtrunA17_Chr2g0327721 63.057 471 120 8 1 418 1 470 0.0 599
Msa0547780 MtrunA17_Chr1g0212951 56.829 410 167 2 424 823 59 468 8.41e-172 505
Msa0547780 MtrunA17_Chr1g0212951 46.452 465 191 6 3 409 4 468 2.27e-146 440
Msa0547780 MtrunA17_Chr7g0276251 43.257 393 201 5 422 806 147 525 9.01e-106 336
Msa0547780 MtrunA17_Chr7g0276251 39.019 428 208 9 12 392 104 525 9.29e-95 307
Msa0547780 MtrunA17_Chr5g0423521 41.867 375 204 4 434 806 125 487 5.01e-101 322
Msa0547780 MtrunA17_Chr5g0423521 36.066 427 214 9 16 392 70 487 1.39e-84 278
Msa0547780 MtrunA17_Chr1g0188051 42.347 392 208 5 421 806 124 503 9.48e-100 319
Msa0547780 MtrunA17_Chr1g0188051 36.902 439 216 9 4 392 76 503 4.56e-87 286
Msa0547780 MtrunA17_Chr1g0209881 41.067 375 207 4 434 806 125 487 1.93e-99 318
Msa0547780 MtrunA17_Chr1g0209881 34.038 426 225 8 14 392 71 487 4.85e-82 272
Msa0547780 MtrunA17_Chr4g0035081 40.665 391 215 5 421 806 121 499 8.90e-99 317
Msa0547780 MtrunA17_Chr4g0035081 34.763 443 229 8 3 394 68 501 5.23e-85 280
Msa0547780 MtrunA17_Chr1g0166191 42.078 385 208 4 425 806 137 509 4.68e-97 312
Msa0547780 MtrunA17_Chr1g0166191 35.892 443 217 9 5 392 79 509 7.85e-84 277
Msa0547780 MtrunA17_Chr4g0063011 40.897 379 209 4 431 806 125 491 9.63e-97 311
Msa0547780 MtrunA17_Chr4g0063011 34.437 453 216 9 3 410 71 487 4.65e-83 275
Msa0547780 MtrunA17_Chr2g0306781 41.985 393 209 6 418 806 19 396 2.95e-96 306
Msa0547780 MtrunA17_Chr2g0306781 37.802 373 193 6 50 392 33 396 6.20e-79 260
Msa0547780 MtrunA17_Chr3g0136561 40.741 378 215 3 434 806 527 900 3.04e-95 318
Msa0547780 MtrunA17_Chr3g0136561 32.955 440 238 8 6 392 465 900 2.39e-74 261
Msa0547780 MtrunA17_Chr6g0480561 40.160 376 209 5 435 806 102 465 1.30e-90 294
Msa0547780 MtrunA17_Chr6g0480561 33.025 433 235 10 9 392 39 465 1.29e-71 243
Msa0547780 MtrunA17_Chr7g0276241 45.638 298 141 2 514 806 2 283 5.25e-90 286
Msa0547780 MtrunA17_Chr7g0276241 41.497 294 129 6 131 392 1 283 1.06e-72 240
Msa0547780 MtrunA17_Chr2g0277841 40.800 375 207 4 435 806 86 448 1.44e-89 290
Msa0547780 MtrunA17_Chr2g0277841 35.680 412 215 9 27 394 45 450 2.17e-72 244
Msa0547780 MtrunA17_Chr2g0295781 37.913 393 229 5 416 806 69 448 2.13e-87 285
Msa0547780 MtrunA17_Chr2g0295781 32.952 437 236 8 8 396 25 452 7.20e-71 240
Msa0547780 MtrunA17_Chr2g0282281 38.196 377 216 3 417 792 132 492 1.75e-83 276
Msa0547780 MtrunA17_Chr2g0282281 32.143 392 215 5 29 378 110 492 2.35e-62 219
Msa0547780 MtrunA17_Chr7g0250661 45.270 296 148 3 514 806 2 286 1.06e-82 266
Msa0547780 MtrunA17_Chr7g0250661 40.476 294 135 6 131 392 1 286 2.53e-65 220
Msa0547780 MtrunA17_Chr1g0204301 36.968 376 221 6 435 806 120 483 3.87e-75 253
Msa0547780 MtrunA17_Chr1g0204301 36.873 339 179 8 84 392 150 483 7.85e-62 216
Msa0547780 MtrunA17_Chr3g0115021 34.933 375 228 4 435 806 121 482 8.14e-71 241
Msa0547780 MtrunA17_Chr3g0115021 36.335 322 168 7 101 392 168 482 6.35e-58 206
Msa0547780 MtrunA17_Chr3g0115041 34.933 375 228 4 435 806 121 482 1.03e-70 241
Msa0547780 MtrunA17_Chr3g0115041 36.335 322 168 7 101 392 168 482 7.83e-58 206
Msa0547780 MtrunA17_Chr6g0469631 35.200 375 227 4 435 806 120 481 3.58e-67 231
Msa0547780 MtrunA17_Chr6g0469631 36.721 305 156 7 118 392 184 481 1.07e-54 197
Msa0547780 MtrunA17_Chr6g0461631 39.560 273 151 3 548 817 3 264 8.59e-61 206
Msa0547780 MtrunA17_Chr6g0461631 36.667 270 136 5 161 403 3 264 6.96e-49 174
Msa0547780 MtrunA17_Chr4g0026871 42.979 235 119 4 576 806 1 224 1.27e-57 196
Msa0547780 MtrunA17_Chr4g0026871 38.696 230 109 5 189 392 1 224 1.02e-42 155
Msa0547780 MtrunA17_Chr4g0026791 41.579 190 99 3 576 764 1 179 2.40e-40 146
Msa0547780 MtrunA17_Chr4g0026791 38.202 178 99 3 189 361 1 172 1.05e-30 119
Msa0547780 MtrunA17_Chr4g0026721 41.401 157 78 3 653 806 11 156 5.86e-36 133
Msa0547780 MtrunA17_Chr4g0026721 35.849 159 75 3 255 392 4 156 2.01e-25 103
Msa0547780 MtrunA17_Chr6g0461621 35.878 131 80 3 422 549 89 218 1.51e-17 82.8
Msa0547780 MtrunA17_Chr6g0461621 29.747 158 89 4 18 157 55 208 4.43e-17 81.3
Msa0547780 MtrunA17_Chr4g0026861 31.061 132 87 2 421 549 83 213 2.03e-17 82.0
Msa0547780 MtrunA17_Chr4g0026861 24.675 154 101 1 19 157 50 203 1.17e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547780 AT2G28630.2 71.971 421 111 3 420 834 54 473 0.0 627
Msa0547780 AT2G28630.2 62.061 456 118 8 19 420 19 473 0.0 569
Msa0547780 AT2G28630.1 71.971 421 111 3 420 834 54 473 0.0 627
Msa0547780 AT2G28630.1 62.061 456 118 8 19 420 19 473 0.0 569
Msa0547780 AT1G07720.2 70.755 424 113 3 420 834 97 518 0.0 615
Msa0547780 AT1G07720.2 61.905 462 121 7 14 420 57 518 0.0 567
Msa0547780 AT1G07720.1 70.755 424 113 3 420 834 54 475 0.0 614
Msa0547780 AT1G07720.1 61.905 462 121 7 14 420 14 475 0.0 566
Msa0547780 AT5G04530.1 55.556 405 170 3 422 823 58 455 6.33e-168 494
Msa0547780 AT5G04530.1 46.742 445 178 9 17 409 18 455 1.26e-139 422
Msa0547780 AT1G01120.1 42.157 408 211 7 411 808 133 525 1.03e-106 338
Msa0547780 AT1G01120.1 37.963 432 203 11 13 392 105 523 5.60e-93 302
Msa0547780 AT2G16280.1 42.711 391 210 4 420 808 131 509 1.55e-102 327
Msa0547780 AT2G16280.1 36.156 437 215 8 3 392 88 507 1.09e-85 282
Msa0547780 AT1G25450.1 42.933 375 200 4 434 806 121 483 2.21e-101 323
Msa0547780 AT1G25450.1 35.484 434 224 7 6 392 59 483 2.56e-87 286
Msa0547780 AT1G19440.1 42.063 378 199 5 434 806 149 511 1.05e-100 322
Msa0547780 AT1G19440.1 35.601 441 224 11 3 392 80 511 1.29e-83 277
Msa0547780 AT2G46720.1 41.688 391 210 5 422 806 84 462 1.51e-100 320
Msa0547780 AT2G46720.1 34.312 443 228 8 2 392 31 462 5.49e-85 279
Msa0547780 AT4G34510.1 42.744 379 200 4 434 808 119 484 3.31e-100 320
Msa0547780 AT4G34510.1 36.905 420 206 8 22 392 73 482 1.51e-83 276
Msa0547780 AT1G04220.1 40.955 398 212 6 421 806 126 512 1.83e-99 320
Msa0547780 AT1G04220.1 35.080 439 219 11 9 392 85 512 5.99e-82 273
Msa0547780 AT5G43760.1 41.960 398 207 7 421 806 132 517 8.80e-99 318
Msa0547780 AT5G43760.1 35.714 420 207 10 27 392 107 517 4.95e-81 270
Msa0547780 AT1G68530.1 41.333 375 206 4 434 806 126 488 1.01e-98 317
Msa0547780 AT1G68530.1 34.793 434 227 7 6 392 64 488 5.68e-84 277
Msa0547780 AT2G26640.1 41.071 392 213 5 421 806 121 500 6.16e-97 312
Msa0547780 AT2G26640.1 34.014 441 230 9 6 394 71 502 7.48e-82 272
Msa0547780 AT4G34250.1 41.910 377 199 6 435 806 123 484 1.02e-94 306
Msa0547780 AT4G34250.1 34.685 444 223 8 4 394 57 486 2.62e-82 273
Msa0547780 AT2G15090.1 40.741 378 202 6 435 806 115 476 1.23e-94 305
Msa0547780 AT2G15090.1 32.805 442 239 6 5 394 43 478 2.16e-80 267
Msa0547780 AT3G10280.1 41.005 378 199 5 434 806 97 455 3.08e-94 303
Msa0547780 AT3G10280.1 33.790 438 230 8 2 392 31 455 6.89e-82 271
Msa0547780 AT4G34520.1 40.103 389 217 4 425 808 112 489 7.75e-94 304
Msa0547780 AT4G34520.1 34.670 424 224 10 9 392 77 487 5.93e-74 251
Msa0547780 AT2G26250.1 36.983 411 240 4 414 806 138 547 5.11e-92 300
Msa0547780 AT2G26250.1 32.251 431 227 7 27 392 117 547 2.46e-73 250
Msa0547780 AT1G71160.1 36.520 408 233 6 412 806 51 445 1.91e-87 285
Msa0547780 AT1G71160.1 34.975 406 211 10 32 392 48 445 8.72e-72 243
Msa0547780 AT5G49070.1 39.733 375 212 5 435 806 89 452 1.16e-86 283
Msa0547780 AT5G49070.1 33.563 435 235 13 4 392 26 452 8.98e-67 230
Msa0547780 AT3G52160.2 34.270 356 191 3 438 793 16 328 5.42e-70 234
Msa0547780 AT3G52160.2 30.029 343 176 4 63 378 22 327 1.93e-50 181
Msa0547780 AT3G52160.1 33.079 393 209 4 412 793 92 441 1.73e-69 237
Msa0547780 AT3G52160.1 27.751 418 220 6 3 378 63 440 7.56e-52 188
Msa0547780 AT1G68530.2 38.326 227 139 1 434 660 126 351 1.08e-50 183
Msa0547780 AT1G68530.2 32.646 291 166 4 6 269 64 351 5.48e-49 178
Msa0547780 AT5G49070.2 32.889 225 150 1 435 659 89 312 1.78e-33 132
Msa0547780 AT5G49070.2 29.310 290 177 8 4 268 26 312 4.11e-29 119

Find 143 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACATATGTTTCCTAATT+TGG 0.070695 4_1:-41179247 Msa0547780:CDS
AAGTCTTTGTTGACAATTTA+AGG 0.088298 4_1:-41173675 Msa0547780:CDS
TTCTCTTATTGGCAAAATTT+TGG 0.091113 4_1:+41178407 None:intergenic
TTCCCTTGTTGGCAAAATTT+TGG 0.124989 4_1:+41173642 None:intergenic
AAGAGAACTTCTTAGGTTTC+TGG 0.130095 4_1:-41178391 Msa0547780:CDS
AATCAGAAGAACAGAAAATT+TGG 0.148132 4_1:-41179120 Msa0547780:CDS
AATCAGAAGAACCAAGAATT+TGG 0.151534 4_1:-41174355 Msa0547780:intron
AACCTAAGAAGTTCTCTTAT+TGG 0.180213 4_1:+41178396 None:intergenic
AAGAAATAAGTTAGCACTTT+TGG 0.201713 4_1:-41173965 Msa0547780:CDS
GATCGAATAGTTTCCAAATT+AGG 0.205177 4_1:+41179234 None:intergenic
CGGCCTTCAAAGATGTTTCT+TGG 0.209523 4_1:+41174264 None:intergenic
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_1:-41173282 Msa0547780:CDS
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_1:-41178041 Msa0547780:CDS
AAGAAACAAGTTAGCACTTT+TGG 0.238756 4_1:-41178730 Msa0547780:CDS
GTATAATTGTTGCCTTAAAA+AGG 0.254484 4_1:-41178523 Msa0547780:CDS
TCATTGCCAGTGTACCAATT+TGG 0.263580 4_1:+41173922 None:intergenic
TCATTGCCAGGATACCAATT+TGG 0.281930 4_1:+41178687 None:intergenic
CTCATCTATACCCAAATTCT+TGG 0.300676 4_1:+41174344 None:intergenic
TAATTATCCACCAAAGTCTT+TGG 0.310010 4_1:-41173209 Msa0547780:CDS
AACCTAAGCAATTCCCTTGT+TGG 0.324150 4_1:+41173631 None:intergenic
TACCTTCACTTAAGAAAATC+AGG 0.326135 4_1:+41177880 None:intergenic
TGCCAATAAGAGAACTTCTT+AGG 0.328413 4_1:-41178398 Msa0547780:CDS
GACAACAAGAACATCGATTT+CGG 0.346319 4_1:+41178908 None:intergenic
GTCTTTGGTCAATTCTTTCA+TGG 0.348215 4_1:-41173194 Msa0547780:CDS
GTAAGTTTGCTCGCCGATTC+CGG 0.351600 4_1:+41174290 None:intergenic
CAGAGTCTCTTAGTCCAAAT+TGG 0.351890 4_1:-41178701 Msa0547780:CDS
GTCGTTGATCAATCCTTTCA+TGG 0.352995 4_1:-41177953 Msa0547780:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.358921 4_1:-41173936 Msa0547780:CDS
AGATCCCGTCGTTCAGTGTT+GGG 0.365852 4_1:+41178997 None:intergenic
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_1:-41173281 Msa0547780:CDS
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_1:-41178040 Msa0547780:CDS
AGATCCCGTCGTTCAGTGTT+GGG 0.368292 4_1:+41174232 None:intergenic
AGTCTTTGTTGACAATTTAA+GGG 0.369626 4_1:-41173674 Msa0547780:CDS
CGATGTAGTGTCATTCTTGC+TGG 0.370734 4_1:+41173415 None:intergenic
CGATGTAGTGTCATTCTTGC+TGG 0.370734 4_1:+41178174 None:intergenic
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_1:-41173472 Msa0547780:CDS
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_1:-41178231 Msa0547780:CDS
ATCAGAAGAACCAAGAATTT+GGG 0.381600 4_1:-41174354 Msa0547780:intron
TCACCATTGAATTTCAAAAC+TGG 0.383289 4_1:-41173526 Msa0547780:CDS
AATCCTTTCATGGAGAAGTA+TGG 0.384841 4_1:-41177943 Msa0547780:CDS
GGTAGTTTGTGGTATGTGTT+GGG 0.386936 4_1:-41173373 Msa0547780:CDS
GGAAACTATTCGATCAAAAG+AGG 0.392901 4_1:-41179226 Msa0547780:CDS
GTGGTATGTGTTGGGGTACA+TGG 0.407931 4_1:-41173365 Msa0547780:CDS
ATCAGAAGAACAGAAAATTT+GGG 0.409146 4_1:-41179119 Msa0547780:CDS
AGAATGACACTACATCGTTT+TGG 0.409603 4_1:-41173409 Msa0547780:CDS
AGAATGACACTACATCGTTT+TGG 0.409603 4_1:-41178168 Msa0547780:CDS
TACCTTCACTTGAGAAAGTC+AGG 0.413091 4_1:+41173121 None:intergenic
GCCATTGTAAGTTCCGGAAT+CGG 0.413937 4_1:-41174303 Msa0547780:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_1:-41173478 Msa0547780:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_1:-41178237 Msa0547780:CDS
CGGAACTTACAATGGCTTTG+AGG 0.426061 4_1:+41174310 None:intergenic
ACACTTCTGCTGGTAGTTTG+TGG 0.431099 4_1:-41173384 Msa0547780:CDS
CTCAAAGCCATTGTAAGTTC+CGG 0.431981 4_1:-41174309 Msa0547780:CDS
TGCCAACAAGGGAATTGCTT+AGG 0.432387 4_1:-41173633 Msa0547780:CDS
TTACAATTGTTGCATTCAAA+AGG 0.434595 4_1:-41173758 Msa0547780:CDS
AGTTCTTCTAAGTCTTCAAC+TGG 0.436663 4_1:-41173568 Msa0547780:CDS
TGTTGAAGATGCAAATGTTT+GGG 0.442098 4_1:-41173245 Msa0547780:CDS
GCACCAAGAAACATCTTTGA+AGG 0.448515 4_1:-41174267 Msa0547780:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.448918 4_1:-41178004 Msa0547780:CDS
ACTTGCACTACAACCCATTC+CGG 0.459457 4_1:+41174029 None:intergenic
CTTTCATGGAGAAGTATAGT+TGG 0.468430 4_1:-41173180 Msa0547780:CDS
CTTAGTCCAAATTGGTATCC+TGG 0.469589 4_1:-41178693 Msa0547780:CDS
CCTAGCATTCTATCTTGTGT+TGG 0.471300 4_1:+41179164 None:intergenic
GAAGATGAGCAGGGTAGGCT+TGG 0.474253 4_1:-41173736 Msa0547780:CDS
GCCGGAACGGAAAAGACAAT+TGG 0.476811 4_1:+41173882 None:intergenic
AAAGAATTGACCAAAGACTT+TGG 0.478011 4_1:+41173199 None:intergenic
TTTCATGGAGAAGTATAGTT+GGG 0.478641 4_1:-41173179 Msa0547780:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.481221 4_1:-41178005 Msa0547780:CDS
GGGAAATCGCTGATCTAGTA+AGG 0.483129 4_1:+41174169 None:intergenic
ACAATTATACGAGTCATCTC+TGG 0.483305 4_1:+41178536 None:intergenic
CATTCAAAAGGAAGATGAGC+AGG 0.483405 4_1:-41173746 Msa0547780:CDS
GTGTACAATCTCACCGGAAT+GGG 0.485997 4_1:-41174042 Msa0547780:CDS
TGGTAGTTTGTGGTATGTGT+TGG 0.487783 4_1:-41173374 Msa0547780:CDS
ATGTTGAAGATGCAAATGTT+TGG 0.488174 4_1:-41173246 Msa0547780:CDS
GTGTACAATATCACTGGAAT+GGG 0.488754 4_1:-41178807 Msa0547780:CDS
AGTGTACAATATCACTGGAA+TGG 0.492125 4_1:-41178808 Msa0547780:CDS
CTTGTGTTGGCTTGTAACAT+TGG 0.492229 4_1:+41179177 None:intergenic
GAGATCCCGTCGTTCAGTGT+TGG 0.492490 4_1:+41178996 None:intergenic
TTTATGATAAGCTTTGGTGC+TGG 0.494845 4_1:-41173307 Msa0547780:CDS
TTTATGATAAGCTTTGGTGC+TGG 0.494845 4_1:-41178066 Msa0547780:CDS
AAGCTCTTGTTGCTACCAAT+GGG 0.506575 4_1:+41178457 None:intergenic
AAAGCTCTTGTTGCTACCAA+TGG 0.508160 4_1:+41178456 None:intergenic
GAGATCCCGTCGTTCAGTGT+TGG 0.510257 4_1:+41174231 None:intergenic
AAGAACATCGATTTCGGAAG+GGG 0.511755 4_1:+41178914 None:intergenic
ATCATTGATCTATCATTGCC+AGG 0.516044 4_1:+41178675 None:intergenic
AAAATCAGGAAGTTCAAAGT+TGG 0.518001 4_1:+41177894 None:intergenic
AGTGTACAATCTCACCGGAA+TGG 0.523311 4_1:-41174043 Msa0547780:CDS
TCAGTGTTGGGGATGATTCG+CGG 0.524299 4_1:+41174244 None:intergenic
AGTTCTAAGTCTTCTAGTGG+TGG 0.525949 4_1:-41178327 Msa0547780:intron
TCAGTGTTGGGGATGCTTCG+CGG 0.526193 4_1:+41179009 None:intergenic
GTAAAAGTGTACAATATCAC+TGG 0.527763 4_1:-41178813 Msa0547780:CDS
AATCTAATATGTAACACTCT+TGG 0.533209 4_1:+41179201 None:intergenic
CATCCCCAACACTGAACGAC+GGG 0.534315 4_1:-41174236 Msa0547780:CDS
GAATCGCGCAACCGCCGGAA+CGG 0.534316 4_1:+41173869 None:intergenic
CAAAAGAATGGCACAACCAC+CGG 0.537261 4_1:+41178629 None:intergenic
CATCCCCAACACTGAACGAC+GGG 0.538304 4_1:-41179001 Msa0547780:CDS
GCCGATTCCGGAACTTACAA+TGG 0.540306 4_1:+41174302 None:intergenic
CGACGATAAAGAAGGAAGAA+TGG 0.540309 4_1:+41174104 None:intergenic
CAAAAGAATCGCGCAACCGC+CGG 0.542437 4_1:+41173864 None:intergenic
GGGAAATAGCTGATCTTGCA+AGG 0.546650 4_1:+41178934 None:intergenic
CAACCATACTTCTCCATGAA+AGG 0.546958 4_1:+41177940 None:intergenic
GCCAATGCCGCAACTTACAA+TGG 0.550333 4_1:+41179067 None:intergenic
CCAACACAAGATAGAATGCT+AGG 0.550403 4_1:-41179164 Msa0547780:CDS
TCTAAGTCTTCTAGTGGTGG+AGG 0.552416 4_1:-41178324 Msa0547780:intron
TCTAGTTCTAAGTCTTCTAG+TGG 0.554027 4_1:-41178330 Msa0547780:intron
AAAGGATTGATCAACGACTC+TGG 0.554712 4_1:+41177958 None:intergenic
GAAGACGAGCATGGTACGGT+TGG 0.556957 4_1:-41178501 Msa0547780:CDS
TGGGAAGTGATGAAAGATGT+TGG 0.557628 4_1:-41178021 Msa0547780:CDS
TTCCTGACTTTCTCAAGTGA+AGG 0.560019 4_1:-41173123 None:intergenic
GAACGACGGGATCTCTGAGA+TGG 0.560538 4_1:-41174223 Msa0547780:CDS
ATGATTCGCGACGATAAAGA+AGG 0.561187 4_1:+41174096 None:intergenic
GATCCCGTCGTTCAGTGTTG+GGG 0.565462 4_1:+41174233 None:intergenic
GAAACTATTCGATCAAAAGA+GGG 0.569684 4_1:-41179225 Msa0547780:CDS
ACAAGAACGTCGATTTCTGA+AGG 0.572740 4_1:+41174147 None:intergenic
CTTAGTCCAAATTGGTACAC+TGG 0.575705 4_1:-41173928 Msa0547780:CDS
GATCCCGTCGTTCAGTGTTG+GGG 0.581474 4_1:+41178998 None:intergenic
AAAAGGAAGATGAGCAGGGT+AGG 0.584974 4_1:-41173741 Msa0547780:CDS
GAACGACGGGATCTCAGAGA+TGG 0.585890 4_1:-41178988 Msa0547780:CDS
TCTTCTAAGTCTTCAACTGG+TGG 0.587214 4_1:-41173565 Msa0547780:CDS
TAGTTGGGTCAATGAAGTTG+AGG 0.590238 4_1:-41173164 Msa0547780:CDS
AATGATAAGCGACGATAGTG+AGG 0.593382 4_1:+41178860 None:intergenic
CTTTCATGGAGAAGTATGGT+TGG 0.599046 4_1:-41177939 Msa0547780:CDS
ACAAGAACATCGATTTCGGA+AGG 0.601193 4_1:+41178912 None:intergenic
AAAGGAAGACGAGCATGGTA+CGG 0.603680 4_1:-41178505 Msa0547780:CDS
GAATTGACCAAAGACTTTGG+TGG 0.608452 4_1:+41173202 None:intergenic
CAAGAACGTCGATTTCTGAA+GGG 0.614902 4_1:+41174148 None:intergenic
CAAGAACATCGATTTCGGAA+GGG 0.615853 4_1:+41178913 None:intergenic
AAGAACGTCGATTTCTGAAG+GGG 0.625621 4_1:+41174149 None:intergenic
AACGGAAAAGACAATTGGCT+AGG 0.628055 4_1:+41173887 None:intergenic
AAGAGTCTTCTCTTGCGCCG+TGG 0.637122 4_1:+41173779 None:intergenic
GTAGTTTGTGGTATGTGTTG+GGG 0.639729 4_1:-41173372 Msa0547780:CDS
CGACGATAGTGAGGGAACAG+AGG 0.641207 4_1:+41178869 None:intergenic
CAACACAAGATAGAATGCTA+GGG 0.644647 4_1:-41179163 Msa0547780:CDS
GAAACACATAAAGTAAAGAG+AGG 0.648005 4_1:+41179276 None:intergenic
TGTTTAGTCAGGACGCATCA+CGG 0.653313 4_1:-41178561 Msa0547780:intron
GTAAAAGTGTACAATCTCAC+CGG 0.655315 4_1:-41174048 Msa0547780:CDS
TGGTTGGCTCAATGAAGTTG+AGG 0.662172 4_1:-41177923 Msa0547780:CDS
GGATTGATCAACGACTCTGG+TGG 0.663465 4_1:+41177961 None:intergenic
ATGATAAGCGACGATAGTGA+GGG 0.664201 4_1:+41178861 None:intergenic
GCATCCCCAACACTGAACGA+CGG 0.688356 4_1:-41179002 Msa0547780:CDS
TCATCCCCAACACTGAACGA+CGG 0.690414 4_1:-41174237 Msa0547780:CDS
ATTCAAAAGGAAGATGAGCA+GGG 0.694442 4_1:-41173745 Msa0547780:CDS
TGTTTAGTACGAACGCACCA+CGG 0.710347 4_1:-41173796 Msa0547780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATACATATATTGT+GGG - chr4_1:41174801-41174820 Msa0547780:intron 10.0%
!! ACATAAATAAAAAGAATAAA+AGG + chr4_1:41176847-41176866 None:intergenic 10.0%
!! TTATTCTTATTATTTCAATT+TGG - chr4_1:41177075-41177094 Msa0547780:intron 10.0%
!! GTTTATATATACATATATTG+TGG - chr4_1:41174800-41174819 Msa0547780:intron 15.0%
!! TTATATATACATATATTGTG+GGG - chr4_1:41174802-41174821 Msa0547780:intron 15.0%
!!! TTAAATTCAAATTTGAAACT+TGG + chr4_1:41176875-41176894 None:intergenic 15.0%
!!! CAATATACTTTTGTTCTTTA+AGG + chr4_1:41173820-41173839 None:intergenic 20.0%
!! TATAATTTCATTCATTGTTG+TGG - chr4_1:41174555-41174574 Msa0547780:intron 20.0%
!! TAAGAAGAAGAAAAAATTGA+AGG - chr4_1:41174594-41174613 Msa0547780:intron 20.0%
!! AAGAAGAAGAAAAAATTGAA+GGG - chr4_1:41174595-41174614 Msa0547780:intron 20.0%
!!! GATGAAGAATGAAAATATTT+TGG + chr4_1:41175894-41175913 None:intergenic 20.0%
!! CATTGAATAAGATAAATCTT+TGG + chr4_1:41177243-41177262 None:intergenic 20.0%
!! AAAAAAAAATCGTAGGATTA+AGG + chr4_1:41177393-41177412 None:intergenic 20.0%
!! TAAGACAAAAAAAAAATCGT+AGG + chr4_1:41177400-41177419 None:intergenic 20.0%
!!! TTGTCTTATGCTATTTTATA+TGG - chr4_1:41177412-41177431 Msa0547780:intron 20.0%
!! GATTTAATGCAAATTGTAAA+GGG + chr4_1:41177526-41177545 None:intergenic 20.0%
!! AGATTTAATGCAAATTGTAA+AGG + chr4_1:41177527-41177546 None:intergenic 20.0%
! TGTACATATGTTTCCTAATT+TGG - chr4_1:41173163-41173182 Msa0547780:CDS 25.0%
! AATCTAATATGTAACACTCT+TGG + chr4_1:41173212-41173231 None:intergenic 25.0%
! AATCAGAAGAACAGAAAATT+TGG - chr4_1:41173290-41173309 Msa0547780:CDS 25.0%
! ATCAGAAGAACAGAAAATTT+GGG - chr4_1:41173291-41173310 Msa0547780:CDS 25.0%
!!! TCTTTTGTTTGTCAAAAGAA+TGG + chr4_1:41173796-41173815 None:intergenic 25.0%
! GTATAATTGTTGCCTTAAAA+AGG - chr4_1:41173887-41173906 Msa0547780:CDS 25.0%
!! AGCTTTTGTTGAGAATTTAA+GGG - chr4_1:41173971-41173990 Msa0547780:CDS 25.0%
!! TCTCTTATTGGCAAAATTTT+GGG + chr4_1:41174005-41174024 None:intergenic 25.0%
!! TTCTCTTATTGGCAAAATTT+TGG + chr4_1:41174006-41174025 None:intergenic 25.0%
!!! TCACCATTGAATTTTAAAAC+TGG - chr4_1:41174125-41174144 Msa0547780:CDS 25.0%
!!! ACACCAGTTTTAAAATTCAA+TGG + chr4_1:41174131-41174150 None:intergenic 25.0%
! AGAAGAAGAAAAAATTGAAG+GGG - chr4_1:41174596-41174615 Msa0547780:intron 25.0%
!! TTTTACTAGATTTCTTGACA+AGG - chr4_1:41174630-41174649 Msa0547780:intron 25.0%
! ATTATTGAAACCTTGATCAA+TGG - chr4_1:41174729-41174748 Msa0547780:intron 25.0%
! AAAGTAAACAAACTCCTTAT+TGG + chr4_1:41174762-41174781 None:intergenic 25.0%
! TCAATTTGAAGATAGTTACT+TGG - chr4_1:41174919-41174938 Msa0547780:intron 25.0%
! TCGATGTTCTATTTGTTTAT+AGG + chr4_1:41175753-41175772 None:intergenic 25.0%
!! ATTTGATTAACATTTGGGTT+TGG + chr4_1:41175984-41176003 None:intergenic 25.0%
! TCCACATTTGATTAACATTT+GGG + chr4_1:41175989-41176008 None:intergenic 25.0%
! TTCCACATTTGATTAACATT+TGG + chr4_1:41175990-41176009 None:intergenic 25.0%
! AATGTTTGTAGGAAAATAGA+AGG - chr4_1:41176029-41176048 Msa0547780:intron 25.0%
!! TTTTACAACTTATTCTACCT+TGG + chr4_1:41176303-41176322 None:intergenic 25.0%
! AGAATAAGTTGTAAAATCCA+AGG - chr4_1:41176307-41176326 Msa0547780:intron 25.0%
! AATGTAGAATCTTGCAAAAT+AGG - chr4_1:41176370-41176389 Msa0547780:intron 25.0%
!!! TGTAGAAGAAGATATTTTAG+AGG - chr4_1:41176527-41176546 Msa0547780:intron 25.0%
!!! TATTTTCTGTTTTAACCTTC+AGG - chr4_1:41176709-41176728 Msa0547780:intron 25.0%
! AATAAAAGGATGAATCGTTT+GGG + chr4_1:41176833-41176852 None:intergenic 25.0%
!!! TTGTGTGGATATTTTTGAAT+AGG - chr4_1:41176964-41176983 Msa0547780:intron 25.0%
!!! TTTGAATAGGTTTTGTAACA+TGG - chr4_1:41176977-41176996 Msa0547780:intron 25.0%
! CAATTGAACTCTTCTAATTT+AGG - chr4_1:41177036-41177055 Msa0547780:intron 25.0%
! AATTTGGACAATAATTCTGT+TGG - chr4_1:41177091-41177110 Msa0547780:intron 25.0%
! AAACATAATTGCAAAATCGT+AGG + chr4_1:41177298-41177317 None:intergenic 25.0%
!! AGTTAAAATTCCGATTTGAA+TGG - chr4_1:41177336-41177355 Msa0547780:intron 25.0%
! TAGGATTTAACCATTCAAAT+CGG + chr4_1:41177349-41177368 None:intergenic 25.0%
!!! TAATGTTTTGGAAAACCTTT+AGG + chr4_1:41177660-41177679 None:intergenic 25.0%
! GCATTTAAATGTGTTCATAA+GGG + chr4_1:41177754-41177773 None:intergenic 25.0%
! TGTACATATGTTTCCTAATT+TGG - chr4_1:41173163-41173182 Msa0547780:CDS 25.0%
! AATCTAATATGTAACACTCT+TGG + chr4_1:41173212-41173231 None:intergenic 25.0%
!! AAGAAATAAGTTAGCACTTT+TGG - chr4_1:41178445-41178464 Msa0547780:CDS 25.0%
! TTACAATTGTTGCATTCAAA+AGG - chr4_1:41178652-41178671 Msa0547780:CDS 25.0%
! AAGTCTTTGTTGACAATTTA+AGG - chr4_1:41178735-41178754 Msa0547780:CDS 25.0%
! AGTCTTTGTTGACAATTTAA+GGG - chr4_1:41178736-41178755 Msa0547780:CDS 25.0%
GAAACACATAAAGTAAAGAG+AGG + chr4_1:41173137-41173156 None:intergenic 30.0%
GATCGAATAGTTTCCAAATT+AGG + chr4_1:41173179-41173198 None:intergenic 30.0%
GAAACTATTCGATCAAAAGA+GGG - chr4_1:41173185-41173204 Msa0547780:CDS 30.0%
! GTAAAAGTGTACAATATCAC+TGG - chr4_1:41173597-41173616 Msa0547780:CDS 30.0%
! AAGAAACAAGTTAGCACTTT+TGG - chr4_1:41173680-41173699 Msa0547780:CDS 30.0%
! TGAAATTGAAGTGTTTAGTC+AGG - chr4_1:41173838-41173857 Msa0547780:CDS 30.0%
TTTATCAAAAACTCTCCCAT+TGG - chr4_1:41173938-41173957 Msa0547780:CDS 30.0%
! GAGCTTTTGTTGAGAATTTA+AGG - chr4_1:41173970-41173989 Msa0547780:CDS 30.0%
AACCTAAGAAGTTCTCTTAT+TGG + chr4_1:41174017-41174036 None:intergenic 30.0%
! AGGGTTTTTATGATAAGCTT+TGG - chr4_1:41174338-41174357 Msa0547780:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG - chr4_1:41174369-41174388 Msa0547780:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG - chr4_1:41174370-41174389 Msa0547780:intron 30.0%
AAAATCAGGAAGTTCAAAGT+TGG + chr4_1:41174519-41174538 None:intergenic 30.0%
! TTCCTGATTTTCTTAAGTGA+AGG - chr4_1:41174528-41174547 Msa0547780:intron 30.0%
TACCTTCACTTAAGAAAATC+AGG + chr4_1:41174533-41174552 None:intergenic 30.0%
TCAATGGTTTATCACCAATA+AGG - chr4_1:41174745-41174764 Msa0547780:intron 30.0%
!!! GAACAGGACAATTTTAACTT+AGG - chr4_1:41174957-41174976 Msa0547780:intron 30.0%
TATTGATAAGAACCATGTGT+CGG + chr4_1:41175227-41175246 None:intergenic 30.0%
! TTTTTATAGCGTTCCTTCTT+GGG + chr4_1:41175318-41175337 None:intergenic 30.0%
!! AAAAGAGTACTTAGCTTCTA+AGG - chr4_1:41175334-41175353 Msa0547780:intron 30.0%
TGTCTAGAAACACATTCTTA+GGG + chr4_1:41175439-41175458 None:intergenic 30.0%
TTGTCTAGAAACACATTCTT+AGG + chr4_1:41175440-41175459 None:intergenic 30.0%
GCATTATTGTTTCATAACGT+TGG + chr4_1:41175546-41175565 None:intergenic 30.0%
AAACACCTTGGGAAATAATT+TGG + chr4_1:41175851-41175870 None:intergenic 30.0%
! TTTTGGATTTCTTCAGAGAA+AGG + chr4_1:41175877-41175896 None:intergenic 30.0%
AAGGTTGAAATCTGAATTTG+GGG + chr4_1:41175961-41175980 None:intergenic 30.0%
GAAGGTTGAAATCTGAATTT+GGG + chr4_1:41175962-41175981 None:intergenic 30.0%
ACCCAAATGTTAATCAAATG+TGG - chr4_1:41175985-41176004 Msa0547780:intron 30.0%
! TCAAGAAGTCTTGGAAATTT+TGG + chr4_1:41176146-41176165 None:intergenic 30.0%
AAAATTTCCAAGACTTCTTG+AGG - chr4_1:41176145-41176164 Msa0547780:intron 30.0%
AAATTTCCAAGACTTCTTGA+GGG - chr4_1:41176146-41176165 Msa0547780:intron 30.0%
TGTTAGATCTCAAAACTCTT+TGG + chr4_1:41176209-41176228 None:intergenic 30.0%
ATAAGTTGTAAAATCCAAGG+TGG - chr4_1:41176310-41176329 Msa0547780:intron 30.0%
ATAAATGGACACTAGTATTC+TGG - chr4_1:41176740-41176759 Msa0547780:intron 30.0%
GAATAAAAGGATGAATCGTT+TGG + chr4_1:41176834-41176853 None:intergenic 30.0%
CAAAAATATCCACACAAAGA+GGG + chr4_1:41176961-41176980 None:intergenic 30.0%
TCAAAAATATCCACACAAAG+AGG + chr4_1:41176962-41176981 None:intergenic 30.0%
ATTGTTGTCTTCCCTTAATT+AGG - chr4_1:41177004-41177023 Msa0547780:intron 30.0%
!! AACTCTTCTAATTTAGGTTG+TGG - chr4_1:41177042-41177061 Msa0547780:intron 30.0%
TGACACACACAAAATTGATT+TGG - chr4_1:41177186-41177205 Msa0547780:intron 30.0%
TTAACTACCATGATCATTGA+AGG + chr4_1:41177322-41177341 None:intergenic 30.0%
AAACATAATCGCAAAATCGT+AGG + chr4_1:41177368-41177387 None:intergenic 30.0%
! AGCTTTTAAACTCTCAACTA+AGG + chr4_1:41177562-41177581 None:intergenic 30.0%
CGCATTTAAATGTGTTCATA+AGG + chr4_1:41177755-41177774 None:intergenic 30.0%
!!! CTAGAGGAAGTGTTTTATAA+GGG + chr4_1:41177806-41177825 None:intergenic 30.0%
GAAGTACATAAAGTAAAGAG+AGG + chr4_1:41177902-41177921 None:intergenic 30.0%
AGGAAACATATGTACAATAG+TGG + chr4_1:41177924-41177943 None:intergenic 30.0%
GATCGTATAGTTTCCAAATT+AGG + chr4_1:41177944-41177963 None:intergenic 30.0%
GAAACTATACGATCAAAAGA+AGG - chr4_1:41177950-41177969 Msa0547780:CDS 30.0%
AATCAGAAGAACCAAGAATT+TGG - chr4_1:41178055-41178074 Msa0547780:CDS 30.0%
ATCAGAAGAACCAAGAATTT+GGG - chr4_1:41178056-41178075 Msa0547780:CDS 30.0%
!!! CAGTATGCTTCTGTTTTTTA+AGG + chr4_1:41178585-41178604 None:intergenic 30.0%
TCACCATTGAATTTCAAAAC+TGG - chr4_1:41178884-41178903 Msa0547780:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG + chr4_1:41178890-41178909 None:intergenic 30.0%
! AGGGTTTTTATGATAAGCTT+TGG - chr4_1:41174338-41174357 Msa0547780:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG - chr4_1:41174369-41174388 Msa0547780:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG - chr4_1:41174370-41174389 Msa0547780:intron 30.0%
ATGTTGAAGATGCAAATGTT+TGG - chr4_1:41179164-41179183 Msa0547780:CDS 30.0%
TGTTGAAGATGCAAATGTTT+GGG - chr4_1:41179165-41179184 Msa0547780:CDS 30.0%
TAATTATCCACCAAAGTCTT+TGG - chr4_1:41179201-41179220 Msa0547780:CDS 30.0%
AAAGAATTGACCAAAGACTT+TGG + chr4_1:41179214-41179233 None:intergenic 30.0%
! TTTCATGGAGAAGTATAGTT+GGG - chr4_1:41179231-41179250 Msa0547780:CDS 30.0%
GGAAACTATTCGATCAAAAG+AGG - chr4_1:41173184-41173203 Msa0547780:CDS 35.0%
CAACACAAGATAGAATGCTA+GGG - chr4_1:41173247-41173266 Msa0547780:CDS 35.0%
!! GACAACAAGAACATCGATTT+CGG + chr4_1:41173505-41173524 None:intergenic 35.0%
AGTGTACAATATCACTGGAA+TGG - chr4_1:41173602-41173621 Msa0547780:CDS 35.0%
GTGTACAATATCACTGGAAT+GGG - chr4_1:41173603-41173622 Msa0547780:CDS 35.0%
ATCATTGATCTATCATTGCC+AGG + chr4_1:41173738-41173757 None:intergenic 35.0%
ACAATTATACGAGTCATCTC+TGG + chr4_1:41173877-41173896 None:intergenic 35.0%
TGCCAATAAGAGAACTTCTT+AGG - chr4_1:41174012-41174031 Msa0547780:CDS 35.0%
AAGAGAACTTCTTAGGTTTC+TGG - chr4_1:41174019-41174038 Msa0547780:CDS 35.0%
!! TCTAGTTCTAAGTCTTCTAG+TGG - chr4_1:41174080-41174099 Msa0547780:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG - chr4_1:41174179-41174198 Msa0547780:CDS 35.0%
! AGAATGACACTACATCGTTT+TGG - chr4_1:41174242-41174261 Msa0547780:CDS 35.0%
GCAAAAAAGAGGCTCAAAAA+AGG - chr4_1:41174311-41174330 Msa0547780:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG - chr4_1:41174344-41174363 Msa0547780:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG - chr4_1:41174405-41174424 Msa0547780:intron 35.0%
TGTTGGAGATGCAAATGTTT+GGG - chr4_1:41174406-41174425 Msa0547780:intron 35.0%
AATCCTTTCATGGAGAAGTA+TGG - chr4_1:41174467-41174486 Msa0547780:intron 35.0%
AGATTTCTTGACAAGGATCA+AGG - chr4_1:41174637-41174656 Msa0547780:intron 35.0%
TGGTGATAAACCATTGATCA+AGG + chr4_1:41174742-41174761 None:intergenic 35.0%
CACTTAAAAAGAAACCAACC+AGG + chr4_1:41174829-41174848 None:intergenic 35.0%
! TAGTGTGCTAGTTTATAGCT+AGG - chr4_1:41175006-41175025 Msa0547780:intron 35.0%
! AGTGTGCTAGTTTATAGCTA+GGG - chr4_1:41175007-41175026 Msa0547780:intron 35.0%
ATTGATAAGAACCATGTGTC+GGG + chr4_1:41175226-41175245 None:intergenic 35.0%
ATGGTTCTTATCAATACCTC+TGG - chr4_1:41175231-41175250 Msa0547780:intron 35.0%
TGGTTCTTATCAATACCTCT+GGG - chr4_1:41175232-41175251 Msa0547780:intron 35.0%
! ACTTGCACCATTTGTTGATT+TGG - chr4_1:41175255-41175274 Msa0547780:intron 35.0%
!! CTTGCACCATTTGTTGATTT+GGG - chr4_1:41175256-41175275 Msa0547780:intron 35.0%
GTTAGTCCCAAATCAACAAA+TGG + chr4_1:41175265-41175284 None:intergenic 35.0%
! GATTTGGGACTAACAATGAT+TGG - chr4_1:41175271-41175290 Msa0547780:intron 35.0%
ATAACTCATAAAGCCCAAGA+AGG - chr4_1:41175302-41175321 Msa0547780:intron 35.0%
! CTTTTTATAGCGTTCCTTCT+TGG + chr4_1:41175319-41175338 None:intergenic 35.0%
!! AGTACTTAGCTTCTAAGGTA+AGG - chr4_1:41175339-41175358 Msa0547780:intron 35.0%
!! GTGTTTCTAGACAAGAACAT+TGG - chr4_1:41175446-41175465 Msa0547780:intron 35.0%
TGCCTTCACTAACAACATTT+GGG + chr4_1:41175568-41175587 None:intergenic 35.0%
ATGCCTTCACTAACAACATT+TGG + chr4_1:41175569-41175588 None:intergenic 35.0%
GAAGTTGCAAGAGAAAAACA+TGG - chr4_1:41175628-41175647 Msa0547780:intron 35.0%
AAGAGAAAAACATGGAGCAT+CGG - chr4_1:41175636-41175655 Msa0547780:intron 35.0%
ACATCGAGAGAAAGATATAG+AGG - chr4_1:41175766-41175785 Msa0547780:intron 35.0%
CATCGAGAGAAAGATATAGA+GGG - chr4_1:41175767-41175786 Msa0547780:intron 35.0%
GACAACCAAATTATTTCCCA+AGG - chr4_1:41175843-41175862 Msa0547780:intron 35.0%
GAGAAAGGTTAAAACACCTT+GGG + chr4_1:41175862-41175881 None:intergenic 35.0%
AGAGAAAGGTTAAAACACCT+TGG + chr4_1:41175863-41175882 None:intergenic 35.0%
GGAAGGTTGAAATCTGAATT+TGG + chr4_1:41175963-41175982 None:intergenic 35.0%
! GATTAACATTTGGGTTTGGA+AGG + chr4_1:41175980-41175999 None:intergenic 35.0%
CTATGCTGCAAAATGTTTGT+AGG - chr4_1:41176018-41176037 Msa0547780:intron 35.0%
! GAAGTCTTGGAAATTTTGGA+GGG + chr4_1:41176142-41176161 None:intergenic 35.0%
! AGAAGTCTTGGAAATTTTGG+AGG + chr4_1:41176143-41176162 None:intergenic 35.0%
! CAAAACTCTTTGGAAGGATA+TGG + chr4_1:41176199-41176218 None:intergenic 35.0%
AGATCTCAAAACTCTTTGGA+AGG + chr4_1:41176205-41176224 None:intergenic 35.0%
AAATAGAATTCACACCACCT+TGG + chr4_1:41176327-41176346 None:intergenic 35.0%
TGTGAATTCTATTTAGCAGC+AGG - chr4_1:41176333-41176352 Msa0547780:intron 35.0%
! TCAAGGAATTTTCCAACTTG+TGG + chr4_1:41176452-41176471 None:intergenic 35.0%
TTTCTTCTTTCCATGGTTTG+TGG + chr4_1:41176494-41176513 None:intergenic 35.0%
! CTTCTTGTTTCTTCTTTCCA+TGG + chr4_1:41176501-41176520 None:intergenic 35.0%
TACTAGTGTCCATTTATCAC+AGG + chr4_1:41176737-41176756 None:intergenic 35.0%
! TGCACGTTAGTTTATACTGA+CGG + chr4_1:41176908-41176927 None:intergenic 35.0%
GAGGTGATGTTGTAAAATAG+TGG + chr4_1:41176939-41176958 None:intergenic 35.0%
TGACAGTGACACCTAATTAA+GGG + chr4_1:41177018-41177037 None:intergenic 35.0%
TTGACAGTGACACCTAATTA+AGG + chr4_1:41177019-41177038 None:intergenic 35.0%
ATGTTTGCCTTCAATGATCA+TGG - chr4_1:41177312-41177331 Msa0547780:intron 35.0%
!! TTTTGGAAAACCTTTAGGTG+TGG + chr4_1:41177655-41177674 None:intergenic 35.0%
TTTATAAGGGTTGAGTGTGT+GGG + chr4_1:41177793-41177812 None:intergenic 35.0%
! TTTTATAAGGGTTGAGTGTG+TGG + chr4_1:41177794-41177813 None:intergenic 35.0%
!!! GCTAGAGGAAGTGTTTTATA+AGG + chr4_1:41177807-41177826 None:intergenic 35.0%
! AGAGTGGGGTTATAGAATTT+TGG + chr4_1:41177864-41177883 None:intergenic 35.0%
CAACACAAGATAGAATGCTA+GGG - chr4_1:41173247-41173266 Msa0547780:CDS 35.0%
CTCATCTATACCCAAATTCT+TGG + chr4_1:41178069-41178088 None:intergenic 35.0%
! GTAAAAGTGTACAATCTCAC+CGG - chr4_1:41178362-41178381 Msa0547780:CDS 35.0%
ATTCAAAAGGAAGATGAGCA+GGG - chr4_1:41178665-41178684 Msa0547780:CDS 35.0%
!! GTAGGCTTGGTTTTCATTTA+GGG - chr4_1:41178687-41178706 Msa0547780:CDS 35.0%
!!! AGACTTTTGTTGCTGCTTTT+GGG + chr4_1:41178721-41178740 None:intergenic 35.0%
!!! AAGACTTTTGTTGCTGCTTT+TGG + chr4_1:41178722-41178741 None:intergenic 35.0%
! ACCCAAAATTTTGCCAACAA+GGG - chr4_1:41178766-41178785 Msa0547780:intron 35.0%
! TCCCTTGTTGGCAAAATTTT+GGG + chr4_1:41178770-41178789 None:intergenic 35.0%
! TTCCCTTGTTGGCAAAATTT+TGG + chr4_1:41178771-41178790 None:intergenic 35.0%
AGTTCTTCTAAGTCTTCAAC+TGG - chr4_1:41178842-41178861 Msa0547780:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG - chr4_1:41174179-41174198 Msa0547780:CDS 35.0%
! AGAATGACACTACATCGTTT+TGG - chr4_1:41174242-41174261 Msa0547780:CDS 35.0%
GCAAAAAAGAGGCTCAAAAA+AGG - chr4_1:41174311-41174330 Msa0547780:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG - chr4_1:41174344-41174363 Msa0547780:CDS 35.0%
GTCTTTGGTCAATTCTTTCA+TGG - chr4_1:41179216-41179235 Msa0547780:CDS 35.0%
! CTTTCATGGAGAAGTATAGT+TGG - chr4_1:41179230-41179249 Msa0547780:CDS 35.0%
!! CTTGTGTTGGCTTGTAACAT+TGG + chr4_1:41173236-41173255 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG + chr4_1:41173249-41173268 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG - chr4_1:41173246-41173265 Msa0547780:CDS 40.0%
CTCAAAGCCATTGTAAGTTG+CGG - chr4_1:41173336-41173355 Msa0547780:CDS 40.0%
GCCTTCAATGACATTTCTTG+GGG + chr4_1:41173382-41173401 None:intergenic 40.0%
GGCCTTCAATGACATTTCTT+GGG + chr4_1:41173383-41173402 None:intergenic 40.0%
!! AAGAACATCGATTTCGGAAG+GGG + chr4_1:41173499-41173518 None:intergenic 40.0%
!! CAAGAACATCGATTTCGGAA+GGG + chr4_1:41173500-41173519 None:intergenic 40.0%
!! ACAAGAACATCGATTTCGGA+AGG + chr4_1:41173501-41173520 None:intergenic 40.0%
ATGATAAGCGACGATAGTGA+GGG + chr4_1:41173552-41173571 None:intergenic 40.0%
AATGATAAGCGACGATAGTG+AGG + chr4_1:41173553-41173572 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG - chr4_1:41173709-41173728 Msa0547780:CDS 40.0%
CTTAGTCCAAATTGGTATCC+TGG - chr4_1:41173717-41173736 Msa0547780:CDS 40.0%
TCATTGCCAGGATACCAATT+TGG + chr4_1:41173726-41173745 None:intergenic 40.0%
! CATGCTCGTCTTCCTTTTTA+AGG + chr4_1:41173902-41173921 None:intergenic 40.0%
CTTAAAAAGGAAGACGAGCA+TGG - chr4_1:41173900-41173919 Msa0547780:CDS 40.0%
AAGCTCTTGTTGCTACCAAT+GGG + chr4_1:41173956-41173975 None:intergenic 40.0%
AAAGCTCTTGTTGCTACCAA+TGG + chr4_1:41173957-41173976 None:intergenic 40.0%
!! AGTTCTAAGTCTTCTAGTGG+TGG - chr4_1:41174083-41174102 Msa0547780:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG - chr4_1:41174152-41174171 Msa0547780:CDS 40.0%
! TGGTAGTTTGTGGTATGTGT+TGG - chr4_1:41174277-41174296 Msa0547780:CDS 40.0%
! GGTAGTTTGTGGTATGTGTT+GGG - chr4_1:41174278-41174297 Msa0547780:CDS 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG - chr4_1:41174279-41174298 Msa0547780:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG - chr4_1:41174300-41174319 Msa0547780:CDS 40.0%
AGAGGCTCAAAAAAGGTGAT+AGG - chr4_1:41174318-41174337 Msa0547780:CDS 40.0%
GAGGCTCAAAAAAGGTGATA+GGG - chr4_1:41174319-41174338 Msa0547780:CDS 40.0%
TGGGAAGTGATGAAAGATGT+TGG - chr4_1:41174389-41174408 Msa0547780:intron 40.0%
AAAGGATTGATCAACGACTC+TGG + chr4_1:41174455-41174474 None:intergenic 40.0%
GTCGTTGATCAATCCTTTCA+TGG - chr4_1:41174457-41174476 Msa0547780:intron 40.0%
CAACCATACTTCTCCATGAA+AGG + chr4_1:41174473-41174492 None:intergenic 40.0%
! CTTTCATGGAGAAGTATGGT+TGG - chr4_1:41174471-41174490 Msa0547780:intron 40.0%
ATACATATATTGTGGGGACC+TGG - chr4_1:41174808-41174827 Msa0547780:intron 40.0%
GTAGTTGTGTTAGTCAGAAC+AGG - chr4_1:41174941-41174960 Msa0547780:intron 40.0%
! AACGGACTTTGTATCCTAGT+TGG + chr4_1:41175132-41175151 None:intergenic 40.0%
GTCATTCAGTGATTCCTCAA+CGG + chr4_1:41175150-41175169 None:intergenic 40.0%
ACTTAGACCCTATCTAGACA+AGG - chr4_1:41175168-41175187 Msa0547780:intron 40.0%
GAATCCTCCTTGTCTAGATA+GGG + chr4_1:41175178-41175197 None:intergenic 40.0%
TGGGACTAACAATGATTGGA+TGG - chr4_1:41175275-41175294 Msa0547780:intron 40.0%
! GGTGGTTTCTTAGGGTTTTA+AGG + chr4_1:41175392-41175411 None:intergenic 40.0%
!! AACGTTGGTGTCAATTTGAG+TGG + chr4_1:41175531-41175550 None:intergenic 40.0%
TGCCCAAATGTTGTTAGTGA+AGG - chr4_1:41175563-41175582 Msa0547780:intron 40.0%
! AGAGAAAAACATGGAGCATC+GGG - chr4_1:41175637-41175656 Msa0547780:intron 40.0%
GGAAGAAGACCATTTGAAGA+AGG - chr4_1:41175670-41175689 Msa0547780:intron 40.0%
CTTCTTGACCCTCCATTTAA+CGG + chr4_1:41175724-41175743 None:intergenic 40.0%
AAGATATAGAGGGAGAGAGT+TGG - chr4_1:41175777-41175796 Msa0547780:intron 40.0%
AGATATAGAGGGAGAGAGTT+GGG - chr4_1:41175778-41175797 Msa0547780:intron 40.0%
TGTTTCGATGTATGACTCGA+GGG + chr4_1:41175932-41175951 None:intergenic 40.0%
TTGTTTCGATGTATGACTCG+AGG + chr4_1:41175933-41175952 None:intergenic 40.0%
! AACTCTTTGGAAGGATATGG+TGG + chr4_1:41176196-41176215 None:intergenic 40.0%
CATAGTCCTAGGATTCAGTA+GGG + chr4_1:41176250-41176269 None:intergenic 40.0%
TATGGACGAGTTAAGGCTTA+GGG - chr4_1:41176266-41176285 Msa0547780:intron 40.0%
TTAGGGTGGAAAACATACCA+AGG - chr4_1:41176283-41176302 Msa0547780:intron 40.0%
ATTCTATTTAGCAGCAGGTC+AGG - chr4_1:41176338-41176357 Msa0547780:intron 40.0%
! ATGGTTTGTGGTGCTTGTTT+GGG + chr4_1:41176482-41176501 None:intergenic 40.0%
CATTTATCACAGGAACCTGA+AGG + chr4_1:41176727-41176746 None:intergenic 40.0%
! CTTCAGGTTCCTGTGATAAA+TGG - chr4_1:41176725-41176744 Msa0547780:intron 40.0%
! GCTGAGGGATTAGTAAAACA+TGG - chr4_1:41176773-41176792 Msa0547780:intron 40.0%
AAATATCCACACAAAGAGGG+AGG + chr4_1:41176958-41176977 None:intergenic 40.0%
CAATGTAAAGCTGTTGGATC+TGG + chr4_1:41177601-41177620 None:intergenic 40.0%
!! TGGGAAAGTATTCAAGCTAG+AGG + chr4_1:41177822-41177841 None:intergenic 40.0%
!!! TGGAGAGAGTTTTGAAGGAT+GGG + chr4_1:41177841-41177860 None:intergenic 40.0%
!! TTTGGTGGAGAGAGTTTTGA+AGG + chr4_1:41177846-41177865 None:intergenic 40.0%
! GTGGGGTTATAGAATTTTGG+TGG + chr4_1:41177861-41177880 None:intergenic 40.0%
AACTCCATTTGAGAGAGAGT+GGG + chr4_1:41177879-41177898 None:intergenic 40.0%
!! CTTGTGTTGGCTTGTAACAT+TGG + chr4_1:41173236-41173255 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG + chr4_1:41173249-41173268 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG - chr4_1:41173246-41173265 Msa0547780:CDS 40.0%
CTCAAAGCCATTGTAAGTTC+CGG - chr4_1:41178101-41178120 Msa0547780:intron 40.0%
GCACCAAGAAACATCTTTGA+AGG - chr4_1:41178143-41178162 Msa0547780:intron 40.0%
!! AAGAACGTCGATTTCTGAAG+GGG + chr4_1:41178264-41178283 None:intergenic 40.0%
!! CAAGAACGTCGATTTCTGAA+GGG + chr4_1:41178265-41178284 None:intergenic 40.0%
!! ACAAGAACGTCGATTTCTGA+AGG + chr4_1:41178266-41178285 None:intergenic 40.0%
CGACGATAAAGAAGGAAGAA+TGG + chr4_1:41178309-41178328 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG + chr4_1:41178317-41178336 None:intergenic 40.0%
! CGTCGTGTCTCATTTTGTAA+CGG + chr4_1:41173578-41173597 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG - chr4_1:41173709-41173728 Msa0547780:CDS 40.0%
CTTAGTCCAAATTGGTACAC+TGG - chr4_1:41178482-41178501 Msa0547780:CDS 40.0%
TCATTGCCAGTGTACCAATT+TGG + chr4_1:41178491-41178510 None:intergenic 40.0%
AACGGAAAAGACAATTGGCT+AGG + chr4_1:41178526-41178545 None:intergenic 40.0%
CATTCAAAAGGAAGATGAGC+AGG - chr4_1:41178664-41178683 Msa0547780:CDS 40.0%
!! GGTAGGCTTGGTTTTCATTT+AGG - chr4_1:41178686-41178705 Msa0547780:CDS 40.0%
! CACCCAAAATTTTGCCAACA+AGG - chr4_1:41178765-41178784 Msa0547780:intron 40.0%
AACCTAAGCAATTCCCTTGT+TGG + chr4_1:41178782-41178801 None:intergenic 40.0%
TCTTCTAAGTCTTCAACTGG+TGG - chr4_1:41178845-41178864 Msa0547780:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG - chr4_1:41174152-41174171 Msa0547780:CDS 40.0%
! TGGTAGTTTGTGGTATGTGT+TGG - chr4_1:41174277-41174296 Msa0547780:CDS 40.0%
! GGTAGTTTGTGGTATGTGTT+GGG - chr4_1:41174278-41174297 Msa0547780:CDS 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG - chr4_1:41174279-41174298 Msa0547780:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG - chr4_1:41174300-41174319 Msa0547780:CDS 40.0%
AGAGGCTCAAAAAAGGTGAT+AGG - chr4_1:41174318-41174337 Msa0547780:CDS 40.0%
GAGGCTCAAAAAAGGTGATA+GGG - chr4_1:41174319-41174338 Msa0547780:CDS 40.0%
GAATTGACCAAAGACTTTGG+TGG + chr4_1:41179211-41179230 None:intergenic 40.0%
TAGTTGGGTCAATGAAGTTG+AGG - chr4_1:41179246-41179265 Msa0547780:CDS 40.0%
! ATGCTAGGGACTGAGTTTTG+TGG - chr4_1:41173261-41173280 Msa0547780:CDS 45.0%
GCCCCAAGAAATGTCATTGA+AGG - chr4_1:41173378-41173397 Msa0547780:CDS 45.0%
CGGCCTTCAATGACATTTCT+TGG + chr4_1:41173384-41173403 None:intergenic 45.0%
GGGAAATAGCTGATCTTGCA+AGG + chr4_1:41173479-41173498 None:intergenic 45.0%
!! GCCAATTGTCTTTTTCGCAC+CGG - chr4_1:41173762-41173781 Msa0547780:CDS 45.0%
ACCGGTGCGAAAAAGACAAT+TGG + chr4_1:41173766-41173785 None:intergenic 45.0%
!! AATTGTCTTTTTCGCACCGG+TGG - chr4_1:41173765-41173784 Msa0547780:CDS 45.0%
CAAAAGAATGGCACAACCAC+CGG + chr4_1:41173784-41173803 None:intergenic 45.0%
TGTTTAGTCAGGACGCATCA+CGG - chr4_1:41173849-41173868 Msa0547780:CDS 45.0%
AAAGGAAGACGAGCATGGTA+CGG - chr4_1:41173905-41173924 Msa0547780:CDS 45.0%
TCTAAGTCTTCTAGTGGTGG+AGG - chr4_1:41174086-41174105 Msa0547780:CDS 45.0%
! CATTTTTGCCTCCATACAGG+AGG - chr4_1:41174155-41174174 Msa0547780:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG + chr4_1:41174169-41174188 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG - chr4_1:41174173-41174192 Msa0547780:CDS 45.0%
! CGATGTAGTGTCATTCTTGC+TGG + chr4_1:41174239-41174258 None:intergenic 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG - chr4_1:41174257-41174276 Msa0547780:CDS 45.0%
ACACTTCTGCTGGTAGTTTG+TGG - chr4_1:41174267-41174286 Msa0547780:CDS 45.0%
! TGGTTGGCTCAATGAAGTTG+AGG - chr4_1:41174487-41174506 Msa0547780:intron 45.0%
ATATATTGTGGGGACCTGGT+TGG - chr4_1:41174812-41174831 Msa0547780:intron 45.0%
GGTGTATTGTACCTCAGGAT+CGG - chr4_1:41175028-41175047 Msa0547780:intron 45.0%
CTAGGATACAAAGTCCGTTG+AGG - chr4_1:41175133-41175152 Msa0547780:intron 45.0%
TAGACCCTATCTAGACAAGG+AGG - chr4_1:41175171-41175190 Msa0547780:intron 45.0%
CGAATCCTCCTTGTCTAGAT+AGG + chr4_1:41175179-41175198 None:intergenic 45.0%
!! CGGGTAAGGGTTTTGTGTAT+TGG + chr4_1:41175207-41175226 None:intergenic 45.0%
AAGAACCATGTGTCGGGTAA+GGG + chr4_1:41175220-41175239 None:intergenic 45.0%
TAAGAACCATGTGTCGGGTA+AGG + chr4_1:41175221-41175240 None:intergenic 45.0%
AGGTCACAGGTGGTTTCTTA+GGG + chr4_1:41175400-41175419 None:intergenic 45.0%
AAGAACATTGGCGTACACAG+TGG - chr4_1:41175458-41175477 Msa0547780:intron 45.0%
AGAACATTGGCGTACACAGT+GGG - chr4_1:41175459-41175478 Msa0547780:intron 45.0%
CTGAAGATGTTAGTGGAGCT+AGG + chr4_1:41175508-41175527 None:intergenic 45.0%
TGAGTGGCTGAAGATGTTAG+TGG + chr4_1:41175515-41175534 None:intergenic 45.0%
AGGCATGAATGATGTCGTAC+CGG - chr4_1:41175583-41175602 Msa0547780:intron 45.0%
AAAGTTGCCATGAGTCTCTC+CGG + chr4_1:41175605-41175624 None:intergenic 45.0%
AGAGACTCATGGCAACTTTG+AGG - chr4_1:41175606-41175625 Msa0547780:intron 45.0%
CCTTCGCTTCCTTCTTCAAA+TGG + chr4_1:41175682-41175701 None:intergenic 45.0%
CCATTTGAAGAAGGAAGCGA+AGG - chr4_1:41175679-41175698 Msa0547780:intron 45.0%
GAGCTACTCCGTTAAATGGA+GGG - chr4_1:41175713-41175732 Msa0547780:intron 45.0%
GATATAGAGGGAGAGAGTTG+GGG - chr4_1:41175779-41175798 Msa0547780:intron 45.0%
ACCTCCATAACTAGTCACAG+AGG - chr4_1:41175815-41175834 Msa0547780:intron 45.0%
CCTCCATAACTAGTCACAGA+GGG - chr4_1:41175816-41175835 Msa0547780:intron 45.0%
TTTCCAAGACTTCTTGAGGG+TGG - chr4_1:41176149-41176168 Msa0547780:intron 45.0%
CACTAACCCTACTGAATCCT+AGG - chr4_1:41176241-41176260 Msa0547780:intron 45.0%
CCATAGTCCTAGGATTCAGT+AGG + chr4_1:41176251-41176270 None:intergenic 45.0%
CCTACTGAATCCTAGGACTA+TGG - chr4_1:41176248-41176267 Msa0547780:intron 45.0%
CTTAACTCGTCCATAGTCCT+AGG + chr4_1:41176261-41176280 None:intergenic 45.0%
CTAGGACTATGGACGAGTTA+AGG - chr4_1:41176259-41176278 Msa0547780:intron 45.0%
CTATGGACGAGTTAAGGCTT+AGG - chr4_1:41176265-41176284 Msa0547780:intron 45.0%
ATAGGATTGAGCATGTGAGC+TGG - chr4_1:41176388-41176407 Msa0547780:intron 45.0%
TAGGATTGAGCATGTGAGCT+GGG - chr4_1:41176389-41176408 Msa0547780:intron 45.0%
! CATGGTTTGTGGTGCTTGTT+TGG + chr4_1:41176483-41176502 None:intergenic 45.0%
CAAACAAGCACCACAAACCA+TGG - chr4_1:41176481-41176500 Msa0547780:intron 45.0%
GTGTGTCAATGTCCCTTAGT+AGG + chr4_1:41177174-41177193 None:intergenic 45.0%
CGATTAGTGTTGCGATTGCA+CGG - chr4_1:41177484-41177503 Msa0547780:intron 45.0%
GCTGCACAATGTAAAGCTGT+TGG + chr4_1:41177607-41177626 None:intergenic 45.0%
GCAGCTACTGCATATGATCT+AGG - chr4_1:41177625-41177644 Msa0547780:intron 45.0%
!!! GTGGAGAGAGTTTTGAAGGA+TGG + chr4_1:41177842-41177861 None:intergenic 45.0%
TAACCCCACTCTCTCTCAAA+TGG - chr4_1:41177872-41177891 Msa0547780:intron 45.0%
ACTCCATTTGAGAGAGAGTG+GGG + chr4_1:41177878-41177897 None:intergenic 45.0%
GAACTCCATTTGAGAGAGAG+TGG + chr4_1:41177880-41177899 None:intergenic 45.0%
! ATGCTAGGGACTGAGTTTTG+TGG - chr4_1:41173261-41173280 Msa0547780:CDS 45.0%
! CGGAACTTACAATGGCTTTG+AGG + chr4_1:41178103-41178122 None:intergenic 45.0%
GCCATTGTAAGTTCCGGAAT+CGG - chr4_1:41178107-41178126 Msa0547780:intron 45.0%
CGGCCTTCAAAGATGTTTCT+TGG + chr4_1:41178149-41178168 None:intergenic 45.0%
GGGAAATCGCTGATCTAGTA+AGG + chr4_1:41178244-41178263 None:intergenic 45.0%
AGTGTACAATCTCACCGGAA+TGG - chr4_1:41178367-41178386 Msa0547780:CDS 45.0%
GTGTACAATCTCACCGGAAT+GGG - chr4_1:41178368-41178387 Msa0547780:CDS 45.0%
ACTTGCACTACAACCCATTC+CGG + chr4_1:41178384-41178403 None:intergenic 45.0%
! GCCAATTGTCTTTTCCGTTC+CGG - chr4_1:41178527-41178546 Msa0547780:CDS 45.0%
! AATTGTCTTTTCCGTTCCGG+CGG - chr4_1:41178530-41178549 Msa0547780:CDS 45.0%
TGTTTAGTACGAACGCACCA+CGG - chr4_1:41178614-41178633 Msa0547780:CDS 45.0%
AAAAGGAAGATGAGCAGGGT+AGG - chr4_1:41178669-41178688 Msa0547780:CDS 45.0%
TGCCAACAAGGGAATTGCTT+AGG - chr4_1:41178777-41178796 Msa0547780:intron 45.0%
! CATTTTTGCCTCCATACAGG+AGG - chr4_1:41174155-41174174 Msa0547780:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG + chr4_1:41174169-41174188 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG - chr4_1:41174173-41174192 Msa0547780:CDS 45.0%
! CGATGTAGTGTCATTCTTGC+TGG + chr4_1:41174239-41174258 None:intergenic 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG - chr4_1:41174257-41174276 Msa0547780:CDS 45.0%
ACACTTCTGCTGGTAGTTTG+TGG - chr4_1:41174267-41174286 Msa0547780:CDS 45.0%
!!! ATAAAAATATTTTAATGTTT+TGG + chr4_1:41177672-41177691 None:intergenic 5.0%
GCCATTGTAAGTTGCGGCAT+TGG - chr4_1:41173342-41173361 Msa0547780:CDS 50.0%
GCCAATGCCGCAACTTACAA+TGG + chr4_1:41173346-41173365 None:intergenic 50.0%
AGATCCCGTCGTTCAGTGTT+GGG + chr4_1:41173416-41173435 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG + chr4_1:41174166-41174185 None:intergenic 50.0%
GTGGTATGTGTTGGGGTACA+TGG - chr4_1:41174286-41174305 Msa0547780:CDS 50.0%
GGATTGATCAACGACTCTGG+TGG + chr4_1:41174452-41174471 None:intergenic 50.0%
GCTAGGGTGTATTGTACCTC+AGG - chr4_1:41175023-41175042 Msa0547780:intron 50.0%
GTGCTTGATGTCCATCGTCA+GGG + chr4_1:41175056-41175075 None:intergenic 50.0%
AGTGCTTGATGTCCATCGTC+AGG + chr4_1:41175057-41175076 None:intergenic 50.0%
! ACGATGGACATCAAGCACTG+CGG - chr4_1:41175058-41175077 Msa0547780:intron 50.0%
ACGAAGGGTCTCGCATATCA+AGG - chr4_1:41175097-41175116 Msa0547780:intron 50.0%
CAAGGTCAAGCAAGCCAACT+AGG - chr4_1:41175115-41175134 Msa0547780:intron 50.0%
CAAAACCCTTACCCGACACA+TGG - chr4_1:41175212-41175231 Msa0547780:intron 50.0%
ACAAATGGTGCAAGTCCCAG+AGG + chr4_1:41175250-41175269 None:intergenic 50.0%
CAGGTCACAGGTGGTTTCTT+AGG + chr4_1:41175401-41175420 None:intergenic 50.0%
CACATTCTTAGGGTTTCCCC+TGG + chr4_1:41175429-41175448 None:intergenic 50.0%
GAACATTGGCGTACACAGTG+GGG - chr4_1:41175460-41175479 Msa0547780:intron 50.0%
!! GAAGGAAGCGAAGGCACTAA+AGG - chr4_1:41175688-41175707 Msa0547780:intron 50.0%
GGAGGAGCTACTCCGTTAAA+TGG - chr4_1:41175709-41175728 Msa0547780:intron 50.0%
GGAGCTACTCCGTTAAATGG+AGG - chr4_1:41175712-41175731 Msa0547780:intron 50.0%
GAGAGAGTTGGGGCAAGAAA+TGG - chr4_1:41175789-41175808 Msa0547780:intron 50.0%
! CCCTCTGTGACTAGTTATGG+AGG + chr4_1:41175819-41175838 None:intergenic 50.0%
! CCACCCTCTGTGACTAGTTA+TGG + chr4_1:41175822-41175841 None:intergenic 50.0%
CCATAACTAGTCACAGAGGG+TGG - chr4_1:41175819-41175838 Msa0547780:intron 50.0%
TCGATGTATGACTCGAGGGT+TGG + chr4_1:41175928-41175947 None:intergenic 50.0%
GAGCGACAAAAGCCACAAGT+TGG - chr4_1:41176437-41176456 Msa0547780:intron 50.0%
GTTTGTGGTGCTTGTTTGGG+AGG + chr4_1:41176479-41176498 None:intergenic 50.0%
!! CTAGTATTCTGGAGTTCGCG+CGG - chr4_1:41176751-41176770 Msa0547780:intron 50.0%
ACATCACCTCCCTCTTTGTG+TGG - chr4_1:41176949-41176968 Msa0547780:intron 50.0%
TTTCCATACCAGCGAGTGCT+TGG - chr4_1:41177148-41177167 Msa0547780:intron 50.0%
TCTAGGTGTGCCACACCTAA+AGG - chr4_1:41177642-41177661 Msa0547780:intron 50.0%
ATAAGGGTTGAGTGTGTGGG+TGG + chr4_1:41177790-41177809 None:intergenic 50.0%
! GCCGATTCCGGAACTTACAA+TGG + chr4_1:41178111-41178130 None:intergenic 50.0%
!! GTAAGTTTGCTCGCCGATTC+CGG + chr4_1:41178123-41178142 None:intergenic 50.0%
! TCAGTGTTGGGGATGATTCG+CGG + chr4_1:41178169-41178188 None:intergenic 50.0%
TCATCCCCAACACTGAACGA+CGG - chr4_1:41178173-41178192 Msa0547780:CDS 50.0%
AGATCCCGTCGTTCAGTGTT+GGG + chr4_1:41173416-41173435 None:intergenic 50.0%
GCCGGAACGGAAAAGACAAT+TGG + chr4_1:41178531-41178550 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG + chr4_1:41174166-41174185 None:intergenic 50.0%
GTGGTATGTGTTGGGGTACA+TGG - chr4_1:41174286-41174305 Msa0547780:CDS 50.0%
! TCAGTGTTGGGGATGCTTCG+CGG + chr4_1:41173404-41173423 None:intergenic 55.0%
GCATCCCCAACACTGAACGA+CGG - chr4_1:41173408-41173427 Msa0547780:CDS 55.0%
CATCCCCAACACTGAACGAC+GGG - chr4_1:41173409-41173428 Msa0547780:CDS 55.0%
GATCCCGTCGTTCAGTGTTG+GGG + chr4_1:41173415-41173434 None:intergenic 55.0%
GAGATCCCGTCGTTCAGTGT+TGG + chr4_1:41173417-41173436 None:intergenic 55.0%
GAACGACGGGATCTCAGAGA+TGG - chr4_1:41173422-41173441 Msa0547780:CDS 55.0%
CGACGATAGTGAGGGAACAG+AGG + chr4_1:41173544-41173563 None:intergenic 55.0%
GAAGACGAGCATGGTACGGT+TGG - chr4_1:41173909-41173928 Msa0547780:CDS 55.0%
! CGATGGACATCAAGCACTGC+GGG - chr4_1:41175059-41175078 Msa0547780:intron 55.0%
ATGCGAGACCCTTCGTCCTT+GGG + chr4_1:41175093-41175112 None:intergenic 55.0%
TATGCGAGACCCTTCGTCCT+TGG + chr4_1:41175094-41175113 None:intergenic 55.0%
TCTTAGGGTTTCCCCTGGTC+AGG + chr4_1:41175424-41175443 None:intergenic 55.0%
TGTCGTACCGGAGAGACTCA+TGG - chr4_1:41175595-41175614 Msa0547780:intron 55.0%
!! GGAAGCGAAGGCACTAAAGG+AGG - chr4_1:41175691-41175710 Msa0547780:intron 55.0%
CCTCCACCCTCAAGAAGTCT+TGG + chr4_1:41176155-41176174 None:intergenic 55.0%
CCAAGACTTCTTGAGGGTGG+AGG - chr4_1:41176152-41176171 Msa0547780:intron 55.0%
GGACGAGTTAAGGCTTAGGG+TGG - chr4_1:41176269-41176288 Msa0547780:intron 55.0%
CTTGTTTGGGAGGTGGGTCA+AGG + chr4_1:41176469-41176488 None:intergenic 55.0%
GTGGTGCTTGTTTGGGAGGT+GGG + chr4_1:41176475-41176494 None:intergenic 55.0%
TGTGGTGCTTGTTTGGGAGG+TGG + chr4_1:41176476-41176495 None:intergenic 55.0%
TTAGTAGGCCAAGCACTCGC+TGG + chr4_1:41177159-41177178 None:intergenic 55.0%
AGCGAGTGCTTGGCCTACTA+AGG - chr4_1:41177158-41177177 Msa0547780:intron 55.0%
GCGAGTGCTTGGCCTACTAA+GGG - chr4_1:41177159-41177178 Msa0547780:intron 55.0%
CATCCCCAACACTGAACGAC+GGG - chr4_1:41173409-41173428 Msa0547780:CDS 55.0%
GATCCCGTCGTTCAGTGTTG+GGG + chr4_1:41173415-41173434 None:intergenic 55.0%
GAGATCCCGTCGTTCAGTGT+TGG + chr4_1:41173417-41173436 None:intergenic 55.0%
! GAACGACGGGATCTCTGAGA+TGG - chr4_1:41178187-41178206 Msa0547780:CDS 55.0%
CAAAAGAATCGCGCAACCGC+CGG + chr4_1:41178549-41178568 None:intergenic 55.0%
AAGAGTCTTCTCTTGCGCCG+TGG + chr4_1:41178634-41178653 None:intergenic 55.0%
GAAGATGAGCAGGGTAGGCT+TGG - chr4_1:41178674-41178693 Msa0547780:CDS 55.0%
!! TCGTCAGGGTACCGATCCTG+AGG + chr4_1:41175042-41175061 None:intergenic 60.0%
CAGGATCGGTACCCTGACGA+TGG - chr4_1:41175042-41175061 Msa0547780:intron 60.0%
ACCTGTGACCTGCCTGACCA+GGG - chr4_1:41175409-41175428 Msa0547780:intron 60.0%
!! GGAGCATCGGGCAAGACATG+AGG - chr4_1:41175649-41175668 Msa0547780:intron 60.0%
AGGCCAAGCACTCGCTGGTA+TGG + chr4_1:41177154-41177173 None:intergenic 60.0%
CACCCACGCCCAAGGACGAA+GGG - chr4_1:41175082-41175101 Msa0547780:intron 65.0%
GACCCTTCGTCCTTGGGCGT+GGG + chr4_1:41175087-41175106 None:intergenic 65.0%
AGACCCTTCGTCCTTGGGCG+TGG + chr4_1:41175088-41175107 None:intergenic 65.0%
CTGGTCAGGCAGGTCACAGG+TGG + chr4_1:41175410-41175429 None:intergenic 65.0%
CACCTGTGACCTGCCTGACC+AGG - chr4_1:41175408-41175427 Msa0547780:intron 65.0%
CCTGTGACCTGCCTGACCAG+GGG - chr4_1:41175410-41175429 Msa0547780:intron 65.0%
AGGGTTTCCCCTGGTCAGGC+AGG + chr4_1:41175420-41175439 None:intergenic 65.0%
!! TTCTGGAGTTCGCGCGGCTG+AGG - chr4_1:41176757-41176776 Msa0547780:intron 65.0%
! TCTGGAGTTCGCGCGGCTGA+GGG - chr4_1:41176758-41176777 Msa0547780:intron 65.0%
GAATCGCGCAACCGCCGGAA+CGG + chr4_1:41178544-41178563 None:intergenic 65.0%
GCACCCACGCCCAAGGACGA+AGG - chr4_1:41175081-41175100 Msa0547780:intron 70.0%
CCCCTGGTCAGGCAGGTCAC+AGG + chr4_1:41175413-41175432 None:intergenic 70.0%
ACTGCGGGCACCCACGCCCA+AGG - chr4_1:41175074-41175093 Msa0547780:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41173126 41179306 41173126 ID=Msa0547780;Name=Msa0547780
chr4_1 mRNA 41173126 41179306 41173126 ID=Msa0547780-mRNA-1;Parent=Msa0547780;Name=Msa0547780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|7|0|837
chr4_1 exon 41179081 41179306 41179081 ID=Msa0547780-mRNA-1:exon:10578;Parent=Msa0547780-mRNA-1
chr4_1 exon 41178796 41179032 41178796 ID=Msa0547780-mRNA-1:exon:10577;Parent=Msa0547780-mRNA-1
chr4_1 exon 41178585 41178780 41178585 ID=Msa0547780-mRNA-1:exon:10576;Parent=Msa0547780-mRNA-1
chr4_1 exon 41178362 41178572 41178362 ID=Msa0547780-mRNA-1:exon:10575;Parent=Msa0547780-mRNA-1
chr4_1 exon 41178154 41178340 41178154 ID=Msa0547780-mRNA-1:exon:10574;Parent=Msa0547780-mRNA-1
chr4_1 exon 41177889 41178099 41177889 ID=Msa0547780-mRNA-1:exon:10573;Parent=Msa0547780-mRNA-1
chr4_1 exon 41173126 41174371 41173126 ID=Msa0547780-mRNA-1:exon:10572;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41179081 41179306 41179081 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41178796 41179032 41178796 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41178585 41178780 41178585 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41178362 41178572 41178362 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41178154 41178340 41178154 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41177889 41178099 41177889 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
chr4_1 CDS 41173126 41174371 41173126 ID=Msa0547780-mRNA-1:cds;Parent=Msa0547780-mRNA-1
Gene Sequence

>Msa0547780

ATGGAGTTCCTCTCTTTACTTTATGTGTTTCTAGCATTGTACATATGTTTCCTAATTTGGAAACTATTCGATCAAAAGAGGGACCAAGAGTGTTACATATTAGATTACCAATGTTACAAGCCAACACAAGATAGAATGCTAGGGACTGAGTTTTGTGGCAAATTAATCAGAAGAACAGAAAATTTGGGTCTAAATGAGTACAAATTTCTGCTCAAAGCCATTGTAAGCCGCGAAGCATCCCCAACACTGAACGACGGGATCTCAGAGATGGAAGAGTTTTTCGACGACAGCATTGCAAAACTCCTTGCAAGATCAGCTATTTCCCCTTCCGAAATCGATGTTCTTGTTGTCAACATCTCAATGTTCACCTCTGTTCCCTCACTATCGTCGCTTATCATTAATCGTTACAAAATGAGACACGACGTAAAAGTGTACAATATCACTGGAATGGGTTGTAGTGCTAATATTGTTAAAAACATTTTCAAATCACAAAGAAACAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTATCCTGGCAATGATAGATCAATGATCTTAGCCAATTGTCTTTTTCGCACCGGTGGTTGTGCCATTCTTTTGACAAACAAAAGATCCTTAAAGAACAAAAGTATATTGAAATTGAAGACGCATCACGGCGCCAGAGATGACTCGTATAATTGTTGCCTTAAAAAGGAAGACGAGCATGGTACGGTTGGTTTTTATTTATCAAAAACTCTCCCATTGGTAGCAACAAGAGCTTTTGTTGAGAATTTAAGGGTAATTTCACCCAAAATTTTGCCAATAAGAGAACTTCTTAGGTTTCTGGTTGTATCACTTTTTAAGAAACTCAAGATATCTTCTAGTGGTGGAGGAACAAGAACTACTAAATCACCATTGAATTTTAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAAAGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGAATGACACTACATCGTTTTGGTAACACTTCTGCTGGTGATAGGGTTTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAAAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATGATTATCCACCAGAGTCGTTGATCAATCCTTTCATGGAGAAGTATGGTTGGCTCAATGAAGTTGAGGATGCAACCAACTTTGAACTTCCTGATTTTCTTAAAAGAACCAAGAATTTGGGTATAGATGAGTACAAATTTCTCCTCAAAGCCATTGTAAGTTCCGGAATCGGCGAGCAAACTTACGCACCAAGAAACATCTTTGAAGGCCGCGAATCATCCCCAACACTGAACGACGGGATCTCTGAGATGGAAGAGTTTTTCAACGACAGCGTTGCAAAACTCCTTACTAGATCAGCGATTTCCCCTTCAGAAATCGACGTTCTTGTCGTCAACATCTCAATGCTCGCCATTCTTCCTTCTTTATCGTCGCGAATCATTAACCGTTACAAAATGAGACACGACGTAAAAGTGTACAATCTCACCGGAATGGGTTGTAGTGCAAGTCTTATTTCATTAGACATTGTTAAAAACATTTTCAAATCACAAAGAAATAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTACACTGGCAATGATAGATCAATGATCCTAGCCAATTGTCTTTTCCGTTCCGGCGGTTGCGCGATTCTTTTGACAAATAAAAGATCCTTAAAAAACAGAAGCATACTGAAATTGAAGTGTTTAGTACGAACGCACCACGGCGCAAGAGAAGACTCTTACAATTGTTGCATTCAAAAGGAAGATGAGCAGGGTAGGCTTGGTTTTCATTTAGGGAAAACTCTCCCAAAAGCAGCAACAAAAGTCTTTGTTGACAATTTAAGGGTAATTTCACCCAAAATTTTGCCAACAAGGGAATTGCTTAGGTTTCTTCTTGTGTTACTTTTCAAGAAACTTAAAATAGCTACTAGTTCTTCTAAGTCTTCAACTGGTGGAACAATATCTACAAAATCACCATTGAATTTCAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAAAGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGAATGACACTACATCGTTTTGGTAACACTTCTGCTGGTAGTTTGTGGTATGTGTTGGGGTACATGGAAGCAAAAAAGAGGCTCAAAAAAGGTGATAGGGTTTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAAAGATGTTGAAGATGCAAATGTTTGGGAAGATTGTATTGATAATTATCCACCAAAGTCTTTGGTCAATTCTTTCATGGAGAAGTATAGTTGGGTCAATGAAGTTGAGGATGTAAACAACTATGATCTTCCTGACTTTCTCAAGTGA
Protein sequence

>Msa0547780

MEFLSLLYVFLALYICFLIWKLFDQKRDQECYILDYQCYKPTQDRMLGTEFCGKLIRRTENLGLNEYKFLLKAIVSREASPTLNDGISEMEEFFDDSIAKLLARSAISPSEIDVLVVNISMFTSVPSLSSLIINRYKMRHDVKVYNITGMGCSANIVKNIFKSQRNKLALLVTSESLSPNWYPGNDRSMILANCLFRTGGCAILLTNKRSLKNKSILKLKTHHGARDDSYNCCLKKEDEHGTVGFYLSKTLPLVATRAFVENLRVISPKILPIRELLRFLVVSLFKKLKISSSGGGTRTTKSPLNFKTGVDHFCLHTGGKAVIDGIGKSLDLSEYDLEPARMTLHRFGNTSAGDRVFMISFGAGFKCNSCLWEVMKDVGDANVWEDCIDDYPPESLINPFMEKYGWLNEVEDATNFELPDFLKRTKNLGIDEYKFLLKAIVSSGIGEQTYAPRNIFEGRESSPTLNDGISEMEEFFNDSVAKLLTRSAISPSEIDVLVVNISMLAILPSLSSRIINRYKMRHDVKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKNRSILKLKCLVRTHHGAREDSYNCCIQKEDEQGRLGFHLGKTLPKAATKVFVDNLRVISPKILPTRELLRFLLVLLFKKLKIATSSSKSSTGGTISTKSPLNFKTGVDHFCLHTGGKAVIDGIGKSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMKDVEDANVWEDCIDNYPPKSLVNSFMEKYSWVNEVEDVNNYDLPDFLK*