AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581350 MtrunA17_Chr4g0072601 95.539 269 7 1 1 264 21 289 0.0 531
Msa0581350 MtrunA17_Chr4g0072611 75.000 264 61 1 2 260 19 282 7.41e-154 430
Msa0581350 MtrunA17_Chr7g0258911 75.379 264 60 1 2 260 18 281 4.28e-148 415
Msa0581350 MtrunA17_Chr4g0072671 72.761 268 64 2 1 259 19 286 6.30e-143 402
Msa0581350 MtrunA17_Chr4g0071341 70.229 262 72 2 5 260 22 283 1.16e-133 379
Msa0581350 MtrunA17_Chr8g0377841 65.283 265 81 3 1 259 23 282 3.36e-127 362
Msa0581350 MtrunA17_Chr2g0299061 63.806 268 87 2 1 258 19 286 1.25e-126 361
Msa0581350 MtrunA17_Chr3g0122021 66.023 259 77 2 5 258 25 277 4.05e-123 352
Msa0581350 MtrunA17_Chr3g0122031 66.023 259 77 2 5 258 25 277 5.15e-123 352
Msa0581350 MtrunA17_Chr4g0072681 64.198 243 74 3 29 258 1 243 6.48e-112 322
Msa0581350 MtrunA17_Chr8g0389641 56.371 259 66 3 5 258 26 242 8.08e-103 299
Msa0581350 MtrunA17_Chr6g0486581 52.612 268 114 5 1 258 19 283 1.40e-94 280
Msa0581350 MtrunA17_Chr5g0443391 48.120 266 128 2 2 262 22 282 3.21e-90 268
Msa0581350 MtrunA17_Chr6g0461761 53.360 253 107 4 15 259 39 288 4.54e-90 268
Msa0581350 MtrunA17_Chr6g0461731 52.569 253 109 4 15 259 62 311 1.23e-89 268
Msa0581350 MtrunA17_Chr4g0054451 49.225 258 118 5 10 258 36 289 3.97e-89 266
Msa0581350 MtrunA17_Chr4g0054431 49.225 258 118 5 10 258 34 287 4.20e-89 266
Msa0581350 MtrunA17_Chr7g0252631 49.624 266 117 5 2 258 30 287 6.95e-87 260
Msa0581350 MtrunA17_Chr7g0252601 52.000 250 113 3 15 258 39 287 8.73e-87 260
Msa0581350 MtrunA17_Chr3g0096651 49.597 248 117 2 16 258 38 282 1.41e-86 259
Msa0581350 MtrunA17_Chr7g0252621 49.624 266 117 5 2 258 30 287 1.70e-86 259
Msa0581350 MtrunA17_Chr1g0206681 46.992 266 134 2 2 260 28 293 6.05e-86 258
Msa0581350 MtrunA17_Chr2g0323161 49.402 251 112 4 23 259 38 287 2.59e-85 256
Msa0581350 MtrunA17_Chr4g0023961 48.249 257 118 4 22 264 39 294 1.34e-83 252
Msa0581350 MtrunA17_Chr8g0390201 53.333 210 91 4 55 258 1 209 5.40e-77 232
Msa0581350 MtrunA17_Chr1g0206081 43.657 268 134 4 6 260 33 296 5.22e-76 233
Msa0581350 MtrunA17_Chr8g0340001 46.352 233 117 4 32 258 1 231 1.73e-64 201
Msa0581350 MtrunA17_Chr4g0072641 67.176 131 29 1 130 260 34 150 6.70e-61 189
Msa0581350 MtrunA17_Chr4g0028221 42.149 242 120 6 30 258 70 304 8.03e-58 186
Msa0581350 MtrunA17_Chr7g0264731 39.474 266 139 7 7 259 36 292 2.31e-56 182
Msa0581350 MtrunA17_Chr2g0327411 37.945 253 137 6 10 249 56 301 6.58e-55 179
Msa0581350 MtrunA17_Chr1g0180451 38.202 267 139 8 7 258 39 294 1.49e-54 177
Msa0581350 MtrunA17_Chr8g0375981 36.078 255 152 4 16 260 39 292 2.67e-53 176
Msa0581350 MtrunA17_Chr2g0303861 39.453 256 139 6 10 258 31 277 1.54e-52 172
Msa0581350 MtrunA17_Chr1g0161951 37.786 262 143 8 16 263 41 296 7.79e-51 169
Msa0581350 MtrunA17_Chr8g0365231 37.308 260 145 8 15 258 53 310 2.05e-50 167
Msa0581350 MtrunA17_Chr2g0303721 38.776 245 139 8 16 256 38 275 7.76e-50 165
Msa0581350 MtrunA17_Chr5g0410621 37.262 263 148 6 13 260 47 307 2.19e-48 163
Msa0581350 MtrunA17_Chr7g0235541 40.367 218 111 6 55 261 1 210 5.69e-45 150
Msa0581350 MtrunA17_Chr8g0382041 33.712 264 155 8 16 264 42 300 2.34e-41 144
Msa0581350 MtrunA17_Chr8g0374231 43.925 107 51 3 159 260 1 103 1.89e-24 94.4
Msa0581350 MtrunA17_Chr4g0072631 74.510 51 13 0 5 55 28 78 5.27e-21 85.1
Msa0581350 MtrunA17_Chr8g0350711 33.333 174 103 6 30 196 54 221 6.01e-14 69.3
Msa0581350 MtrunA17_Chr8g0390181 44.615 65 34 1 6 70 26 88 3.23e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581350 AT4G25810.1 70.189 265 72 2 1 258 19 283 3.08e-142 400
Msa0581350 AT5G57560.1 68.182 264 76 2 3 258 18 281 1.74e-139 394
Msa0581350 AT5G57550.1 68.966 261 73 2 3 258 25 282 2.83e-137 388
Msa0581350 AT4G30270.1 66.540 263 69 2 5 262 21 269 6.52e-132 374
Msa0581350 AT2G18800.1 64.184 282 83 5 1 264 21 302 1.75e-130 372
Msa0581350 AT5G48070.1 64.639 263 83 3 3 259 24 282 1.25e-128 366
Msa0581350 AT4G30280.1 64.528 265 84 3 1 259 22 282 5.41e-123 352
Msa0581350 AT5G57530.1 61.303 261 96 1 5 260 24 284 1.74e-121 348
Msa0581350 AT3G23730.1 59.774 266 98 2 2 258 21 286 2.85e-121 348
Msa0581350 AT1G65310.1 63.498 263 86 3 3 259 24 282 3.11e-120 345
Msa0581350 AT1G65310.2 63.498 263 86 3 3 259 46 304 3.55e-120 345
Msa0581350 AT4G14130.1 60.687 262 97 2 3 258 23 284 4.00e-120 345
Msa0581350 AT4G30290.1 63.019 265 88 3 1 259 17 277 1.29e-119 343
Msa0581350 AT5G57540.1 59.387 261 101 1 5 260 23 283 3.78e-119 342
Msa0581350 AT4G25820.1 58.868 265 104 1 1 260 23 287 1.84e-115 333
Msa0581350 AT5G65730.1 46.008 263 133 4 3 258 30 290 4.24e-87 261
Msa0581350 AT5G13870.2 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa0581350 AT5G13870.1 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa0581350 AT5G13870.3 52.174 253 108 4 15 258 39 287 2.79e-86 259
Msa0581350 AT4G03210.1 51.852 243 108 3 24 258 43 284 1.26e-85 257
Msa0581350 AT4G37800.1 48.263 259 121 5 11 260 37 291 3.76e-85 256
Msa0581350 AT4G28850.1 47.674 258 123 4 14 261 35 290 7.56e-85 255
Msa0581350 AT2G06850.1 50.198 253 113 4 15 258 42 290 2.57e-82 249
Msa0581350 AT4G03210.2 51.477 237 103 4 30 258 24 256 3.38e-81 245
Msa0581350 AT2G14620.1 45.693 267 136 4 2 260 31 296 7.84e-79 240
Msa0581350 AT2G06850.2 51.304 230 99 4 38 258 5 230 6.06e-78 236
Msa0581350 AT1G11545.1 44.569 267 125 6 11 260 41 301 9.77e-77 235
Msa0581350 AT4G13090.1 46.640 253 125 4 14 258 38 288 3.03e-73 226
Msa0581350 AT2G14620.2 47.826 230 111 4 39 260 18 246 1.43e-71 220
Msa0581350 AT2G14620.3 48.214 224 107 4 45 260 13 235 6.60e-70 215
Msa0581350 AT3G25050.1 43.969 257 132 5 10 258 37 289 1.18e-69 216
Msa0581350 AT4G13080.1 45.200 250 129 4 14 258 45 291 1.11e-68 214
Msa0581350 AT2G36870.1 40.000 265 137 6 7 258 42 297 3.30e-57 185
Msa0581350 AT1G14720.1 37.743 257 145 7 16 260 39 292 2.74e-52 173
Msa0581350 AT3G44990.1 40.244 246 121 8 29 258 58 293 6.55e-52 171
Msa0581350 AT1G32170.1 36.604 265 151 7 10 260 34 295 2.57e-51 171
Msa0581350 AT1G10550.1 36.015 261 143 7 19 258 52 309 7.65e-49 164
Msa0581350 AT2G01850.1 35.798 257 150 7 16 260 39 292 1.23e-48 164
Msa0581350 AT3G48580.1 37.121 264 139 10 1 258 31 273 3.66e-43 148
Msa0581350 AT4G18990.1 33.213 277 159 7 10 262 42 316 4.15e-43 150
Msa0581350 AT4G18990.2 35.000 220 121 6 63 262 25 242 1.69e-38 136
Msa0581350 AT3G48580.3 37.445 227 120 8 38 258 4 214 1.60e-37 132
Msa0581350 AT2G36870.2 42.446 139 65 3 7 132 42 178 5.99e-27 103
Msa0581350 AT3G48580.2 31.818 264 133 11 1 258 31 253 7.38e-26 102

Find 69 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATAATCAATATCTTTA+TGG 0.128432 4_1:-86734128 Msa0581350:CDS
GAGAACAACAATTCTATTTA+TGG 0.140855 4_1:-86733833 Msa0581350:CDS
AATCTCATTGGCTGCTTCTT+TGG 0.175421 4_1:+86733062 None:intergenic
TCCATAAAGATATTGATTAT+TGG 0.219272 4_1:+86734127 None:intergenic
ATTGGCTGCTTCTTTGGATA+TGG 0.238008 4_1:+86733068 None:intergenic
TGAAATAGACTTTGAATTCT+TGG 0.240382 4_1:-86733919 Msa0581350:CDS
GACCCTGAGGGAATCGTTTA+AGG 0.250841 4_1:+86732784 None:intergenic
TATTGATGGCAGACCAATTA+GGG 0.305687 4_1:-86733120 Msa0581350:CDS
AAGTTCTTGAATTCCCTAAT+TGG 0.320227 4_1:+86733107 None:intergenic
TTCCTAAAAGAAGCAGTAAA+TGG 0.325310 4_1:+86732966 None:intergenic
CTATTGATGGCAGACCAATT+AGG 0.330217 4_1:-86733121 Msa0581350:CDS
CAAATCAGAAAAGGCTCAAA+TGG 0.340400 4_1:-86732845 Msa0581350:CDS
ATGCAAATTAAACTTGTTCC+TGG 0.361969 4_1:-86734095 Msa0581350:CDS
GAAATAGACTTTGAATTCTT+GGG 0.378927 4_1:-86733918 Msa0581350:CDS
ATTCCCTCAGGGTCTCCCTT+TGG 0.410581 4_1:-86732775 Msa0581350:CDS
ACTCTTCTTCTGACAATGCT+TGG 0.416402 4_1:-86732890 Msa0581350:CDS
GTTCTCTGTCCCCTTTGCCT+AGG 0.418397 4_1:+86733850 None:intergenic
TTCTCTGTCCCCTTTGCCTA+GGG 0.435604 4_1:+86733851 None:intergenic
GTCTGTGGAATGCTGATGAT+TGG 0.441709 4_1:-86733031 Msa0581350:CDS
CTAGACAGAACCTCTGGCTC+TGG 0.460483 4_1:-86734158 Msa0581350:CDS
ATGTGTACACCCTAGGCAAA+GGG 0.461356 4_1:-86733860 Msa0581350:CDS
TAGGTATGAAAATCTGTAGT+TGG 0.461780 4_1:+86733804 None:intergenic
AATTAGGGAATTCAAGAACT+TGG 0.476768 4_1:-86733105 Msa0581350:CDS
GAAACTTACACAACATGTGC+AGG 0.480987 4_1:+86733765 None:intergenic
AGACTTGAATATAATCTCAT+TGG 0.482257 4_1:+86733050 None:intergenic
AATGATAAGCAAACGAAAGA+TGG 0.487788 4_1:+86732662 None:intergenic
ATTGGACAAAACACAACCAT+TGG 0.488431 4_1:+86732935 None:intergenic
ACGAAGTCATGAGAATTAAG+AGG 0.489173 4_1:-86732738 Msa0581350:exon
CTTGTTCCTGGAAATTCAGC+TGG 0.496538 4_1:-86734083 Msa0581350:CDS
ATCAAGATGTTAGTATCACT+TGG 0.496547 4_1:-86734232 Msa0581350:CDS
TAGATTCTACAAATCAGAAA+AGG 0.498615 4_1:-86732854 Msa0581350:CDS
TGACCTTAAACGATTCCCTC+AGG 0.499561 4_1:-86732787 Msa0581350:CDS
TTTGCAAGAAGAAATTCCAT+TGG 0.499781 4_1:+86732917 None:intergenic
ACATTGGTATGAACTATGTA+AGG 0.504779 4_1:+86733879 None:intergenic
ACCGTGCCAGCTGAATTTCC+AGG 0.514387 4_1:+86734077 None:intergenic
TTTAGGAACTTCAAAGCCAA+TGG 0.515491 4_1:-86732951 Msa0581350:CDS
AGCATTGTCAGAAGAAGAGT+TGG 0.525258 4_1:+86732893 None:intergenic
AGGATTCCAGAGAAAAGAAT+AGG 0.527569 4_1:+86733785 None:intergenic
TCAAGATGTTAGTATCACTT+GGG 0.531310 4_1:-86734231 Msa0581350:CDS
ACGTTCAGAAGGGTCATTGT+GGG 0.534482 4_1:-86733943 Msa0581350:CDS
AAATCAGAAAAGGCTCAAAT+GGG 0.537276 4_1:-86732844 Msa0581350:CDS
TTAATTCTCATGACTTCGTA+CGG 0.539231 4_1:+86732742 None:intergenic
TCTGTGGAATGCTGATGATT+GGG 0.547719 4_1:-86733030 Msa0581350:CDS
TCCTGGAAATTCAGCTGGCA+CGG 0.548180 4_1:-86734078 Msa0581350:intron
CTGTCTCTAGACAGAACCTC+TGG 0.548223 4_1:-86734164 Msa0581350:CDS
GCATTGCAGTTACGTTCAGA+AGG 0.549452 4_1:-86733954 Msa0581350:intron
TACGGACAGTGCATTCCAAA+GGG 0.551810 4_1:+86732760 None:intergenic
TTTGCCTAGGGTGTACACAT+TGG 0.559431 4_1:+86733863 None:intergenic
GTGGACTTGTGAAAACAGAT+TGG 0.561998 4_1:-86732998 Msa0581350:CDS
AATGTGTACACCCTAGGCAA+AGG 0.565362 4_1:-86733861 Msa0581350:CDS
TGAGATTATATTCAAGTCTG+TGG 0.566225 4_1:-86733046 Msa0581350:CDS
GTACGGACAGTGCATTCCAA+AGG 0.571008 4_1:+86732759 None:intergenic
TACAAGTAATAAACTACTAG+AGG 0.585236 4_1:+86732708 None:intergenic
CATACCAATGTGTACACCCT+AGG 0.600781 4_1:-86733867 Msa0581350:CDS
GACCTTAAACGATTCCCTCA+GGG 0.603618 4_1:-86732786 Msa0581350:CDS
GATGATTGGGCAACAAGAGG+TGG 0.606066 4_1:-86733017 Msa0581350:CDS
TTCAAGAACTTGGAGAGTGA+AGG 0.610761 4_1:-86733095 Msa0581350:CDS
CAAGATGTTAGTATCACTTG+GGG 0.610855 4_1:-86734230 Msa0581350:CDS
GAATTCTTGGGAAATTTGAG+TGG 0.630242 4_1:-86733906 Msa0581350:CDS
CATTGCAGTTACGTTCAGAA+GGG 0.632405 4_1:-86733953 Msa0581350:intron
TACGTTCAGAAGGGTCATTG+TGG 0.637977 4_1:-86733944 Msa0581350:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.638116 4_1:+86734148 None:intergenic
AGATGTTAGTATCACTTGGG+GGG 0.655003 4_1:-86734228 Msa0581350:CDS
ATTCCAAAGGGAGACCCTGA+GGG 0.664464 4_1:+86732772 None:intergenic
CATTCCAAAGGGAGACCCTG+AGG 0.667653 4_1:+86732771 None:intergenic
AGAGGTAAGATTGTGAACAA+TGG 0.680526 4_1:-86734200 Msa0581350:CDS
GCTGATGATTGGGCAACAAG+AGG 0.682230 4_1:-86733020 Msa0581350:CDS
TGTGTACACCCTAGGCAAAG+GGG 0.687067 4_1:-86733859 Msa0581350:CDS
AAGATGTTAGTATCACTTGG+GGG 0.699999 4_1:-86734229 Msa0581350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAAACATATTAATA+AGG + chr4_1:86732861-86732880 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - chr4_1:86732865-86732884 Msa0581350:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr4_1:86733322-86733341 Msa0581350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr4_1:86733323-86733342 Msa0581350:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG + chr4_1:86733323-86733342 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr4_1:86733322-86733341 Msa0581350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr4_1:86733323-86733342 Msa0581350:intron 10.0%
!! AAACATTAAACATATTAATA+AGG + chr4_1:86732861-86732880 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - chr4_1:86732865-86732884 Msa0581350:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr4_1:86733322-86733341 Msa0581350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr4_1:86733323-86733342 Msa0581350:intron 10.0%
!!! TACATATTTTCAAAAATTTA+AGG + chr4_1:86733323-86733342 None:intergenic 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - chr4_1:86733322-86733341 Msa0581350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - chr4_1:86733323-86733342 Msa0581350:intron 10.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - chr4_1:86733152-86733171 Msa0581350:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - chr4_1:86733261-86733280 Msa0581350:intron 15.0%
!!! ATTTTCAAAAATTTAAGGAT+TGG + chr4_1:86733350-86733369 None:intergenic 15.0%
!! TATTTATCAAAATTAAGGAT+TGG + chr4_1:86733382-86733401 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - chr4_1:86733589-86733608 Msa0581350:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + chr4_1:86733682-86733701 None:intergenic 15.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - chr4_1:86733152-86733171 Msa0581350:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - chr4_1:86733261-86733280 Msa0581350:intron 15.0%
!!! ATTTTCAAAAATTTAAGGAT+TGG + chr4_1:86733350-86733369 None:intergenic 15.0%
!! TATTTATCAAAATTAAGGAT+TGG + chr4_1:86733382-86733401 None:intergenic 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - chr4_1:86733589-86733608 Msa0581350:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + chr4_1:86733682-86733701 None:intergenic 15.0%
!! TCCAATAATCAATATCTTTA+TGG - chr4_1:86732751-86732770 Msa0581350:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG + chr4_1:86732755-86732774 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG - chr4_1:86733282-86733301 Msa0581350:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG - chr4_1:86733563-86733582 Msa0581350:intron 20.0%
!! TCCAATAATCAATATCTTTA+TGG - chr4_1:86732751-86732770 Msa0581350:CDS 20.0%
!!! TCCATAAAGATATTGATTAT+TGG + chr4_1:86732755-86732774 None:intergenic 20.0%
!!! GGATCAAATTTCAAATTTTA+AGG - chr4_1:86733282-86733301 Msa0581350:intron 20.0%
!! AACAAATTATATGTACCAAT+TGG - chr4_1:86733563-86733582 Msa0581350:intron 20.0%
! TGAAATAGACTTTGAATTCT+TGG - chr4_1:86732960-86732979 Msa0581350:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - chr4_1:86732961-86732980 Msa0581350:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - chr4_1:86733046-86733065 Msa0581350:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - chr4_1:86733291-86733310 Msa0581350:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - chr4_1:86733292-86733311 Msa0581350:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - chr4_1:86733444-86733463 Msa0581350:intron 25.0%
! GACAATGCATAATATATACA+AGG + chr4_1:86733495-86733514 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + chr4_1:86733581-86733600 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - chr4_1:86733745-86733764 Msa0581350:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG + chr4_1:86733832-86733851 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - chr4_1:86734025-86734044 Msa0581350:intron 25.0%
! TACAAGTAATAAACTACTAG+AGG + chr4_1:86734174-86734193 None:intergenic 25.0%
! TGAAATAGACTTTGAATTCT+TGG - chr4_1:86732960-86732979 Msa0581350:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - chr4_1:86732961-86732980 Msa0581350:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - chr4_1:86733046-86733065 Msa0581350:CDS 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - chr4_1:86733291-86733310 Msa0581350:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - chr4_1:86733292-86733311 Msa0581350:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - chr4_1:86733444-86733463 Msa0581350:intron 25.0%
! GACAATGCATAATATATACA+AGG + chr4_1:86733495-86733514 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + chr4_1:86733581-86733600 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - chr4_1:86733745-86733764 Msa0581350:intron 25.0%
! AGACTTGAATATAATCTCAT+TGG + chr4_1:86733832-86733851 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - chr4_1:86734025-86734044 Msa0581350:intron 25.0%
! TACAAGTAATAAACTACTAG+AGG + chr4_1:86734174-86734193 None:intergenic 25.0%
ATCAAGATGTTAGTATCACT+TGG - chr4_1:86732647-86732666 Msa0581350:three_prime_UTR 30.0%
TCAAGATGTTAGTATCACTT+GGG - chr4_1:86732648-86732667 Msa0581350:three_prime_UTR 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - chr4_1:86732784-86732803 Msa0581350:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + chr4_1:86733003-86733022 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + chr4_1:86733078-86733097 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - chr4_1:86733088-86733107 Msa0581350:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - chr4_1:86733447-86733466 Msa0581350:intron 30.0%
CATAATATATACAAGGTCTG+AGG + chr4_1:86733488-86733507 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - chr4_1:86733723-86733742 Msa0581350:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + chr4_1:86733775-86733794 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - chr4_1:86733774-86733793 Msa0581350:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - chr4_1:86733833-86733852 Msa0581350:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + chr4_1:86733916-86733935 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + chr4_1:86733965-86733984 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - chr4_1:86734035-86734054 Msa0581350:intron 30.0%
TTAATTCTCATGACTTCGTA+CGG + chr4_1:86734140-86734159 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG + chr4_1:86734220-86734239 None:intergenic 30.0%
ATCAAGATGTTAGTATCACT+TGG - chr4_1:86732647-86732666 Msa0581350:three_prime_UTR 30.0%
TCAAGATGTTAGTATCACTT+GGG - chr4_1:86732648-86732667 Msa0581350:three_prime_UTR 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - chr4_1:86732784-86732803 Msa0581350:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + chr4_1:86733003-86733022 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + chr4_1:86733078-86733097 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - chr4_1:86733088-86733107 Msa0581350:CDS 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - chr4_1:86733447-86733466 Msa0581350:intron 30.0%
CATAATATATACAAGGTCTG+AGG + chr4_1:86733488-86733507 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - chr4_1:86733723-86733742 Msa0581350:intron 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + chr4_1:86733775-86733794 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - chr4_1:86733774-86733793 Msa0581350:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - chr4_1:86733833-86733852 Msa0581350:CDS 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + chr4_1:86733916-86733935 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + chr4_1:86733965-86733984 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - chr4_1:86734035-86734054 Msa0581350:intron 30.0%
TTAATTCTCATGACTTCGTA+CGG + chr4_1:86734140-86734159 None:intergenic 30.0%
AATGATAAGCAAACGAAAGA+TGG + chr4_1:86734220-86734239 None:intergenic 30.0%
CAAGATGTTAGTATCACTTG+GGG - chr4_1:86732649-86732668 Msa0581350:three_prime_UTR 35.0%
AAGATGTTAGTATCACTTGG+GGG - chr4_1:86732650-86732669 Msa0581350:three_prime_UTR 35.0%
AGAGGTAAGATTGTGAACAA+TGG - chr4_1:86732679-86732698 Msa0581350:three_prime_UTR 35.0%
GAATTCTTGGGAAATTTGAG+TGG - chr4_1:86732973-86732992 Msa0581350:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + chr4_1:86733097-86733116 None:intergenic 35.0%
! ATGCAGAGTTTGAAACACAT+AGG - chr4_1:86733415-86733434 Msa0581350:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - chr4_1:86733450-86733469 Msa0581350:intron 35.0%
! AAGGTCTGAGGTTTAAACTT+CGG + chr4_1:86733476-86733495 None:intergenic 35.0%
TATCAACTGAGCTAAAGTCA+CGG - chr4_1:86733517-86733536 Msa0581350:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + chr4_1:86733712-86733731 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - chr4_1:86733759-86733778 Msa0581350:intron 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - chr4_1:86733911-86733930 Msa0581350:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - chr4_1:86733928-86733947 Msa0581350:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG + chr4_1:86733947-86733966 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - chr4_1:86733946-86733965 Msa0581350:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - chr4_1:86734034-86734053 Msa0581350:intron 35.0%
ACGAAGTCATGAGAATTAAG+AGG - chr4_1:86734141-86734160 Msa0581350:CDS 35.0%
CAAGATGTTAGTATCACTTG+GGG - chr4_1:86732649-86732668 Msa0581350:three_prime_UTR 35.0%
AAGATGTTAGTATCACTTGG+GGG - chr4_1:86732650-86732669 Msa0581350:three_prime_UTR 35.0%
AGAGGTAAGATTGTGAACAA+TGG - chr4_1:86732679-86732698 Msa0581350:three_prime_UTR 35.0%
GAATTCTTGGGAAATTTGAG+TGG - chr4_1:86732973-86732992 Msa0581350:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + chr4_1:86733097-86733116 None:intergenic 35.0%
! ATGCAGAGTTTGAAACACAT+AGG - chr4_1:86733415-86733434 Msa0581350:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - chr4_1:86733450-86733469 Msa0581350:intron 35.0%
! AAGGTCTGAGGTTTAAACTT+CGG + chr4_1:86733476-86733495 None:intergenic 35.0%
TATCAACTGAGCTAAAGTCA+CGG - chr4_1:86733517-86733536 Msa0581350:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + chr4_1:86733712-86733731 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - chr4_1:86733759-86733778 Msa0581350:intron 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - chr4_1:86733911-86733930 Msa0581350:CDS 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - chr4_1:86733928-86733947 Msa0581350:CDS 35.0%
ATTGGACAAAACACAACCAT+TGG + chr4_1:86733947-86733966 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - chr4_1:86733946-86733965 Msa0581350:CDS 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - chr4_1:86734034-86734053 Msa0581350:intron 35.0%
ACGAAGTCATGAGAATTAAG+AGG - chr4_1:86734141-86734160 Msa0581350:CDS 35.0%
AGATGTTAGTATCACTTGGG+GGG - chr4_1:86732651-86732670 Msa0581350:three_prime_UTR 40.0%
CATTGCAGTTACGTTCAGAA+GGG - chr4_1:86732926-86732945 Msa0581350:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + chr4_1:86733117-86733136 None:intergenic 40.0%
! CTATTGATGGCAGACCAATT+AGG - chr4_1:86733758-86733777 Msa0581350:intron 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - chr4_1:86733784-86733803 Msa0581350:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + chr4_1:86733814-86733833 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + chr4_1:86733820-86733839 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - chr4_1:86733849-86733868 Msa0581350:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG - chr4_1:86733881-86733900 Msa0581350:CDS 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + chr4_1:86733989-86734008 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - chr4_1:86733989-86734008 Msa0581350:intron 40.0%
AGATGTTAGTATCACTTGGG+GGG - chr4_1:86732651-86732670 Msa0581350:three_prime_UTR 40.0%
CATTGCAGTTACGTTCAGAA+GGG - chr4_1:86732926-86732945 Msa0581350:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + chr4_1:86733117-86733136 None:intergenic 40.0%
! CTATTGATGGCAGACCAATT+AGG - chr4_1:86733758-86733777 Msa0581350:intron 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - chr4_1:86733784-86733803 Msa0581350:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + chr4_1:86733814-86733833 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + chr4_1:86733820-86733839 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - chr4_1:86733849-86733868 Msa0581350:CDS 40.0%
GTGGACTTGTGAAAACAGAT+TGG - chr4_1:86733881-86733900 Msa0581350:CDS 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + chr4_1:86733989-86734008 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - chr4_1:86733989-86734008 Msa0581350:intron 40.0%
TTAGTATCACTTGGGGGGAT+GGG - chr4_1:86732656-86732675 Msa0581350:three_prime_UTR 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - chr4_1:86732796-86732815 Msa0581350:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - chr4_1:86732925-86732944 Msa0581350:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - chr4_1:86732935-86732954 Msa0581350:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - chr4_1:86732936-86732955 Msa0581350:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - chr4_1:86733012-86733031 Msa0581350:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG + chr4_1:86733019-86733038 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - chr4_1:86733018-86733037 Msa0581350:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG - chr4_1:86733019-86733038 Msa0581350:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG - chr4_1:86733848-86733867 Msa0581350:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG - chr4_1:86734092-86734111 Msa0581350:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - chr4_1:86734093-86734112 Msa0581350:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG + chr4_1:86734122-86734141 None:intergenic 45.0%
TTAGTATCACTTGGGGGGAT+GGG - chr4_1:86732656-86732675 Msa0581350:three_prime_UTR 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - chr4_1:86732796-86732815 Msa0581350:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - chr4_1:86732925-86732944 Msa0581350:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - chr4_1:86732935-86732954 Msa0581350:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - chr4_1:86732936-86732955 Msa0581350:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - chr4_1:86733012-86733031 Msa0581350:CDS 45.0%
TTTGCCTAGGGTGTACACAT+TGG + chr4_1:86733019-86733038 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - chr4_1:86733018-86733037 Msa0581350:CDS 45.0%
ATGTGTACACCCTAGGCAAA+GGG - chr4_1:86733019-86733038 Msa0581350:CDS 45.0%
GTCTGTGGAATGCTGATGAT+TGG - chr4_1:86733848-86733867 Msa0581350:CDS 45.0%
TGACCTTAAACGATTCCCTC+AGG - chr4_1:86734092-86734111 Msa0581350:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - chr4_1:86734093-86734112 Msa0581350:CDS 45.0%
TACGGACAGTGCATTCCAAA+GGG + chr4_1:86734122-86734141 None:intergenic 45.0%
!!! ATTTTTGAAATTTATAAAAA+TGG + chr4_1:86733229-86733248 None:intergenic 5.0%
!! ATATTTATTTATCAAAATTA+AGG + chr4_1:86733387-86733406 None:intergenic 5.0%
!!! ATTTTTGAAATTTATAAAAA+TGG + chr4_1:86733229-86733248 None:intergenic 5.0%
!! ATATTTATTTATCAAAATTA+AGG + chr4_1:86733387-86733406 None:intergenic 5.0%
GTTAGTATCACTTGGGGGGA+TGG - chr4_1:86732655-86732674 Msa0581350:three_prime_UTR 50.0%
CTGTCTCTAGACAGAACCTC+TGG - chr4_1:86732715-86732734 Msa0581350:three_prime_UTR 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - chr4_1:86732801-86732820 Msa0581350:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - chr4_1:86733020-86733039 Msa0581350:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + chr4_1:86733031-86733050 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - chr4_1:86733859-86733878 Msa0581350:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG - chr4_1:86733862-86733881 Msa0581350:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG + chr4_1:86734098-86734117 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG + chr4_1:86734110-86734129 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG + chr4_1:86734123-86734142 None:intergenic 50.0%
GTTAGTATCACTTGGGGGGA+TGG - chr4_1:86732655-86732674 Msa0581350:three_prime_UTR 50.0%
CTGTCTCTAGACAGAACCTC+TGG - chr4_1:86732715-86732734 Msa0581350:three_prime_UTR 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - chr4_1:86732801-86732820 Msa0581350:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - chr4_1:86733020-86733039 Msa0581350:CDS 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + chr4_1:86733031-86733050 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - chr4_1:86733859-86733878 Msa0581350:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG - chr4_1:86733862-86733881 Msa0581350:CDS 50.0%
GACCCTGAGGGAATCGTTTA+AGG + chr4_1:86734098-86734117 None:intergenic 50.0%
ATTCCAAAGGGAGACCCTGA+GGG + chr4_1:86734110-86734129 None:intergenic 50.0%
GTACGGACAGTGCATTCCAA+AGG + chr4_1:86734123-86734142 None:intergenic 50.0%
! CTAGACAGAACCTCTGGCTC+TGG - chr4_1:86732721-86732740 Msa0581350:three_prime_UTR 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + chr4_1:86732734-86732753 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + chr4_1:86732805-86732824 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + chr4_1:86733032-86733051 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG - chr4_1:86734104-86734123 Msa0581350:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG + chr4_1:86734111-86734130 None:intergenic 55.0%
! CTAGACAGAACCTCTGGCTC+TGG - chr4_1:86732721-86732740 Msa0581350:three_prime_UTR 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + chr4_1:86732734-86732753 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + chr4_1:86732805-86732824 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + chr4_1:86733032-86733051 None:intergenic 55.0%
ATTCCCTCAGGGTCTCCCTT+TGG - chr4_1:86734104-86734123 Msa0581350:CDS 55.0%
CATTCCAAAGGGAGACCCTG+AGG + chr4_1:86734111-86734130 None:intergenic 55.0%
ATCACTTGGGGGGATGGGAG+AGG - chr4_1:86732661-86732680 Msa0581350:three_prime_UTR 60.0%
ATCACTTGGGGGGATGGGAG+AGG - chr4_1:86732661-86732680 Msa0581350:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86732622 86734279 86732622 ID=Msa0581350;Name=Msa0581350
chr4_1 mRNA 86732622 86734279 86732622 ID=Msa0581350-mRNA-1;Parent=Msa0581350;Name=Msa0581350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.66|1|1|1|3|127|264
chr4_1 exon 86732622 86733148 86732622 ID=Msa0581350-mRNA-1:exon:32124;Parent=Msa0581350-mRNA-1
chr4_1 exon 86733774 86733967 86733774 ID=Msa0581350-mRNA-1:exon:32123;Parent=Msa0581350-mRNA-1
chr4_1 exon 86734079 86734279 86734079 ID=Msa0581350-mRNA-1:exon:32122;Parent=Msa0581350-mRNA-1
chr4_1 CDS 86734079 86734279 86734079 ID=Msa0581350-mRNA-1:cds;Parent=Msa0581350-mRNA-1
chr4_1 CDS 86733774 86733967 86733774 ID=Msa0581350-mRNA-1:cds;Parent=Msa0581350-mRNA-1
chr4_1 CDS 86732749 86733148 86732749 ID=Msa0581350-mRNA-1:cds;Parent=Msa0581350-mRNA-1
chr4_1 three_prime_UTR 86732622 86732748 86732622 ID=Msa0581350-mRNA-1:three_prime_utr;Parent=Msa0581350-mRNA-1
Gene Sequence

>Msa0581350

ATGGTAGCTTTTGCTGGAAACTTGTATCAAGATGTTAGTATCACTTGGGGGGATGGGAGAGGTAAGATTGTGAACAATGGTCAGCTTCTAACTCTGTCTCTAGACAGAACCTCTGGCTCTGGCTTTCAATCCAATAATCAATATCTTTATGGAAAGATTGACATGCAAATTAAACTTGTTCCTGGAAATTCAGCTGGCACGTTACGTTCAGAAGGGTCATTGTGGGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGTGGTGATCCTTACATAGTTCATACCAATGTGTACACCCTAGGCAAAGGGGACAGAGAACAACAATTCTATTTATGGTTTGATCCAACTACAGATTTTCATACCTATTCTTTTCTCTGGAATCCTGCACATGTTGTATTTTCTATTGATGGCAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGAAGGTGTTCCATATCCAAAGAAGCAGCCAATGAGATTATATTCAAGTCTGTGGAATGCTGATGATTGGGCAACAAGAGGTGGACTTGTGAAAACAGATTGGAGTCAAGCTCCATTTACTGCTTCTTTTAGGAACTTCAAAGCCAATGGTTGTGTTTTGTCCAATGGAATTTCTTCTTGCAAATCCAACTCTTCTTCTGACAATGCTTGGTTGTATCAACAGCTAGATTCTACAAATCAGAAAAGGCTCAAATGGGTGCAGAAGAATTACATGATTTACAATTACTGCAATGACCTTAAACGATTCCCTCAGGGTCTCCCTTTGGAATGCACTGTCCGTACGAAGTCATGA

Protein sequence

>Msa0581350

MVAFAGNLYQDVSITWGDGRGKIVNNGQLLTLSLDRTSGSGFQSNNQYLYGKIDMQIKLVPGNSAGTLRSEGSLWDEIDFEFLGNLSGDPYIVHTNVYTLGKGDREQQFYLWFDPTTDFHTYSFLWNPAHVVFSIDGRPIREFKNLESEGVPYPKKQPMRLYSSLWNADDWATRGGLVKTDWSQAPFTASFRNFKANGCVLSNGISSCKSNSSSDNAWLYQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQGLPLECTVRTKS*