AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063510 MtrunA17_Chr7g0242711 100.000 72 0 0 1 72 1 72 9.89e-49 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063510 AT5G01350.1 55.882 68 30 0 2 69 3 70 2.56e-22 81.6

Find 29 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAGATTGAAGATGTTTC+TGG 0.207138 7_2:-55433241 None:intergenic
GTGACACGTGCGAGGGTTAT+TGG 0.244673 7_2:-55433154 None:intergenic
TAGTATTCTAATCTTGTCTT+TGG 0.292395 7_2:-55435786 None:intergenic
TGACACGTGCGAGGGTTATT+GGG 0.311408 7_2:-55433153 None:intergenic
AGAGTTAGCTGAGCAGTTAA+AGG 0.355352 7_2:+55435473 Msa1063510:CDS
CCTTGATGGATTGTGATGTT+AGG 0.359617 7_2:-55433262 None:intergenic
GAAGAAATTACAAACCTTGA+TGG 0.360492 7_2:-55433276 None:intergenic
AGCAGTGATTCTTTCATTTG+TGG 0.379898 7_2:+55435620 Msa1063510:exon
AGTGAGGACATCAAAGAATA+TGG 0.394875 7_2:+55435342 Msa1063510:CDS
ATTTGTGGCTGCTTTGCTGA+AGG 0.444834 7_2:+55435635 Msa1063510:three_prime_UTR
ACTGCAAACCTCTGAAATGC+AGG 0.473854 7_2:-55435322 None:intergenic
CTCTTACTTTGTCAATGAAG+TGG 0.484729 7_2:+55433579 Msa1063510:CDS
CTTGATGGATTGTGATGTTA+GGG 0.489033 7_2:-55433261 None:intergenic
TTGTCAATGGTCTTGCCAAC+AGG 0.492451 7_2:+55433602 Msa1063510:CDS
CATAATGAGATGGGATGTAA+TGG 0.493082 7_2:+55435741 Msa1063510:three_prime_UTR
TGTTACGCAGTTTGAAGTTG+AGG 0.494130 7_2:+55433517 Msa1063510:intron
GTCAATGAAGTGGTTGTCAA+TGG 0.500920 7_2:+55433589 Msa1063510:CDS
TTTGTGGCTGCTTTGCTGAA+GGG 0.500966 7_2:+55435636 Msa1063510:three_prime_UTR
AGAAACTCTTTCATTTGTTG+CGG 0.519205 7_2:+55433085 None:intergenic
CCTAACATCACAATCCATCA+AGG 0.536122 7_2:+55433262 Msa1063510:five_prime_UTR
CTCTTTCATTTGTTGCGGAT+AGG 0.556108 7_2:+55433090 Msa1063510:five_prime_UTR
GACACGTGCGAGGGTTATTG+GGG 0.560328 7_2:-55433152 None:intergenic
TTCGCAGCCCTGCATTTCAG+AGG 0.564752 7_2:+55435314 Msa1063510:intron
ACAAATGAAAGAATCACTGC+TGG 0.590287 7_2:-55435618 None:intergenic
CATTTCAGAGGTTTGCAGTG+AGG 0.594381 7_2:+55435326 Msa1063510:CDS
CTGCAAACCTCTGAAATGCA+GGG 0.596012 7_2:-55435321 None:intergenic
AGAAAACAGTGACACGTGCG+AGG 0.596427 7_2:-55433162 None:intergenic
GAAAACAGTGACACGTGCGA+GGG 0.657689 7_2:-55433161 None:intergenic
ACACGTGCGAGGGTTATTGG+GGG 0.720119 7_2:-55433151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAAAATAAAAATTAC+AGG - chr7_2:55433301-55433320 None:intergenic 10.0%
!! AAGGATAATTAAAAAAAATA+GGG - chr7_2:55433353-55433372 None:intergenic 10.0%
!!! TTTCTATTTTAAATTATTGA+AGG + chr7_2:55435853-55435872 Msa1063510:three_prime_UTR 10.0%
!!! ATTAAAAAAAATAGGGTTTT+TGG - chr7_2:55433346-55433365 None:intergenic 15.0%
!! GAAGGATAATTAAAAAAAAT+AGG - chr7_2:55433354-55433373 None:intergenic 15.0%
!! TGCTGTATTAATAATTATAT+TGG - chr7_2:55433973-55433992 None:intergenic 15.0%
!!! AATATTTTCTATTTTCAGAT+AGG + chr7_2:55434869-55434888 Msa1063510:intron 15.0%
!! GATCATAAATACAATTATTA+GGG - chr7_2:55435080-55435099 None:intergenic 15.0%
!! TGATCATAAATACAATTATT+AGG - chr7_2:55435081-55435100 None:intergenic 15.0%
!!! TCATGAAAAGATTGAATTTT+TGG + chr7_2:55433446-55433465 Msa1063510:intron 20.0%
!! ATAAAATAAAAATCACCTGT+TGG - chr7_2:55433620-55433639 None:intergenic 20.0%
!! TATAATTATTAATACAGCAC+AGG + chr7_2:55433974-55433993 Msa1063510:intron 20.0%
!! ATAATTATTAATACAGCACA+GGG + chr7_2:55433975-55433994 Msa1063510:intron 20.0%
!!! CTTTGTAACAATTATTTTCA+TGG - chr7_2:55434666-55434685 None:intergenic 20.0%
!! CAAAAATGAGAATCTTATAT+GGG - chr7_2:55435129-55435148 None:intergenic 20.0%
!! TATGGAAGAAATTTCAAAAA+AGG + chr7_2:55435360-55435379 Msa1063510:CDS 20.0%
!! ATGGAAGAAATTTCAAAAAA+GGG + chr7_2:55435361-55435380 Msa1063510:CDS 20.0%
!!! AACAAAAATGTAGTTGATTT+TGG + chr7_2:55435712-55435731 Msa1063510:three_prime_UTR 20.0%
! TGGTAAAATAAAATTAGAGC+TGG - chr7_2:55433326-55433345 None:intergenic 25.0%
!!! GATTTTTTCCGAAAACATTT+AGG + chr7_2:55433379-55433398 Msa1063510:intron 25.0%
! ATTAGAGGTGAATTGTTATA+TGG + chr7_2:55433410-55433429 Msa1063510:intron 25.0%
! TTAGAGGTGAATTGTTATAT+GGG + chr7_2:55433411-55433430 Msa1063510:intron 25.0%
!!! AAACATCATTAGTTGATGAT+TGG + chr7_2:55433811-55433830 Msa1063510:intron 25.0%
! AAGTTAACCATAGAAAAACT+TGG + chr7_2:55433862-55433881 Msa1063510:intron 25.0%
!!! CTTCAACAGTTTTAAAGTAA+AGG - chr7_2:55434075-55434094 None:intergenic 25.0%
!!! CTTTACTTTAAAACTGTTGA+AGG + chr7_2:55434073-55434092 Msa1063510:intron 25.0%
! ATTGATATCTATAACAGTCA+CGG - chr7_2:55434275-55434294 None:intergenic 25.0%
! CTGTTATAGATATCAATCTT+AGG + chr7_2:55434278-55434297 Msa1063510:intron 25.0%
!! TTTACAGTTTTTGCTACAAT+AGG + chr7_2:55435038-55435057 Msa1063510:intron 25.0%
! CAATTATTAGGGAGAAAATT+GGG - chr7_2:55435069-55435088 None:intergenic 25.0%
! ACAATTATTAGGGAGAAAAT+TGG - chr7_2:55435070-55435089 None:intergenic 25.0%
! GCAAAAATGAGAATCTTATA+TGG - chr7_2:55435130-55435149 None:intergenic 25.0%
! CTCTAAGTTCACATTATTAT+TGG + chr7_2:55435152-55435171 Msa1063510:intron 25.0%
!! CACATTATTATTGGCTATTA+AGG + chr7_2:55435161-55435180 Msa1063510:intron 25.0%
! AATTCAAAAGCAGGAAAATT+TGG - chr7_2:55435197-55435216 None:intergenic 25.0%
! AACATTAACATTAGAAGTGA+TGG - chr7_2:55435284-55435303 None:intergenic 25.0%
! CTAATGTTAATGTTTCATTG+TGG + chr7_2:55435290-55435309 Msa1063510:intron 25.0%
!!! TGTATTACCTCCATTTTTTT+CGG - chr7_2:55435504-55435523 None:intergenic 25.0%
!!! TTGGTTTTTACATAATGAGA+TGG + chr7_2:55435731-55435750 Msa1063510:three_prime_UTR 25.0%
!! TGGTTTTTACATAATGAGAT+GGG + chr7_2:55435732-55435751 Msa1063510:three_prime_UTR 25.0%
! TAGTATTCTAATCTTGTCTT+TGG - chr7_2:55435789-55435808 None:intergenic 25.0%
GAAGAAATTACAAACCTTGA+TGG - chr7_2:55433279-55433298 None:intergenic 30.0%
! TATCTCGTCCTAAATGTTTT+CGG - chr7_2:55433390-55433409 None:intergenic 30.0%
! ATTTAGGACGAGATAATTAG+AGG + chr7_2:55433395-55433414 Msa1063510:intron 30.0%
TTGAAGTTGAGGAAAAAACA+TGG + chr7_2:55433528-55433547 Msa1063510:exon 30.0%
! GACTCCAATTTCTTAGATTT+TGG + chr7_2:55433684-55433703 Msa1063510:intron 30.0%
! TCCAATTTCTTAGATTTTGG+TGG + chr7_2:55433687-55433706 Msa1063510:intron 30.0%
TCCACCAAAATCTAAGAAAT+TGG - chr7_2:55433691-55433710 None:intergenic 30.0%
! TTGATGATTGGTGTGAAAAA+TGG + chr7_2:55433823-55433842 Msa1063510:intron 30.0%
CATTCTATGACATTGTCATT+AGG + chr7_2:55433903-55433922 Msa1063510:intron 30.0%
! AATTATATTGGCTGCAAAAG+TGG - chr7_2:55433961-55433980 None:intergenic 30.0%
AAGGTGATCTTTATCAGTAT+CGG - chr7_2:55434056-55434075 None:intergenic 30.0%
TAGATATCAATCTTAGGTAG+TGG + chr7_2:55434284-55434303 Msa1063510:intron 30.0%
AGGGTTATATAGGGTTATAT+AGG - chr7_2:55434399-55434418 None:intergenic 30.0%
CATAAGGAAGAATGTGAAAA+AGG - chr7_2:55434476-55434495 None:intergenic 30.0%
CCTAATATGGATTCAAATGT+AGG - chr7_2:55434520-55434539 None:intergenic 30.0%
CCTACATTTGAATCCATATT+AGG + chr7_2:55434517-55434536 Msa1063510:intron 30.0%
TTCAAAAGAAGGAATCTGAT+TGG + chr7_2:55434565-55434584 Msa1063510:intron 30.0%
TCTCAACTCTCTAATATTGA+CGG - chr7_2:55434626-55434645 None:intergenic 30.0%
CTTCAAAGCACAATGAAAAT+TGG - chr7_2:55434754-55434773 None:intergenic 30.0%
AGACCAAATTAGAGTAGTTT+AGG + chr7_2:55434772-55434791 Msa1063510:intron 30.0%
! ATAGGACGTTTTTCTCTTAA+TGG + chr7_2:55434887-55434906 Msa1063510:intron 30.0%
AGAATCTTATATGGGATGAA+TGG - chr7_2:55435121-55435140 None:intergenic 30.0%
!! TCCTGCTTTTGAATTATCTA+AGG + chr7_2:55435202-55435221 Msa1063510:intron 30.0%
TCCTTAGATAATTCAAAAGC+AGG - chr7_2:55435206-55435225 None:intergenic 30.0%
TATTGACCATGTGAACAAAT+CGG + chr7_2:55435409-55435428 Msa1063510:intron 30.0%
!! CTTGATGGATTGTGATGTTA+GGG - chr7_2:55433264-55433283 None:intergenic 35.0%
TTCGGAAAAAATCGAACAGA+AGG - chr7_2:55433372-55433391 None:intergenic 35.0%
!!! TGGTGGCAATTTTTTGCATA+GGG + chr7_2:55433552-55433571 Msa1063510:CDS 35.0%
CTCTTACTTTGTCAATGAAG+TGG + chr7_2:55433579-55433598 Msa1063510:CDS 35.0%
AAGGTTGTTCCAATTAAGAG+AGG + chr7_2:55433653-55433672 Msa1063510:intron 35.0%
AGGTTGTTCCAATTAAGAGA+GGG + chr7_2:55433654-55433673 Msa1063510:intron 35.0%
GGTGTGAAAAATGGAAAACT+TGG + chr7_2:55433832-55433851 Msa1063510:intron 35.0%
! CCTAATGCCAAGTTTTTCTA+TGG - chr7_2:55433872-55433891 None:intergenic 35.0%
CCATAGAAAAACTTGGCATT+AGG + chr7_2:55433869-55433888 Msa1063510:intron 35.0%
TCTATGACATTGTCATTAGG+TGG + chr7_2:55433906-55433925 Msa1063510:intron 35.0%
!! TGATCTTTATCAGTATCGGT+AGG - chr7_2:55434052-55434071 None:intergenic 35.0%
! TCAATCTTAGGTAGTGGTAT+TGG + chr7_2:55434290-55434309 Msa1063510:intron 35.0%
TAACCAAATTGAGCAGCATA+TGG - chr7_2:55434429-55434448 None:intergenic 35.0%
! GTAAGAGCATAGACAACAAT+AGG + chr7_2:55434722-55434741 Msa1063510:intron 35.0%
GAGCCTAAACTACTCTAATT+TGG - chr7_2:55434778-55434797 None:intergenic 35.0%
!! AGTAGTTTAGGCTCTAAACT+AGG + chr7_2:55434784-55434803 Msa1063510:intron 35.0%
GTCCAATAGTTAGAGATAGA+GGG - chr7_2:55434938-55434957 None:intergenic 35.0%
AGTCCAATAGTTAGAGATAG+AGG - chr7_2:55434939-55434958 None:intergenic 35.0%
AAAGACGGTTGATCATATGA+AGG - chr7_2:55434964-55434983 None:intergenic 35.0%
CATAGAACCATATGCAAAGA+CGG - chr7_2:55434979-55434998 None:intergenic 35.0%
! GTCTTTGCATATGGTTCTAT+GGG + chr7_2:55434978-55434997 Msa1063510:intron 35.0%
! AAACTGTAAAGTGCCATCTT+AGG - chr7_2:55435028-55435047 None:intergenic 35.0%
AGTGAGGACATCAAAGAATA+TGG + chr7_2:55435342-55435361 Msa1063510:CDS 35.0%
ATTGACCATGTGAACAAATC+GGG + chr7_2:55435410-55435429 Msa1063510:intron 35.0%
!! GGTTGACTTTTGTGTTATTC+TGG + chr7_2:55435431-55435450 Msa1063510:intron 35.0%
AAAGGACCTTCCGAAAAAAA+TGG + chr7_2:55435491-55435510 Msa1063510:CDS 35.0%
!!! TTACCTCCATTTTTTTCGGA+AGG - chr7_2:55435500-55435519 None:intergenic 35.0%
ACAAATGAAAGAATCACTGC+TGG - chr7_2:55435621-55435640 None:intergenic 35.0%
AGCAGTGATTCTTTCATTTG+TGG + chr7_2:55435620-55435639 Msa1063510:exon 35.0%
CATAATGAGATGGGATGTAA+TGG + chr7_2:55435741-55435760 Msa1063510:three_prime_UTR 35.0%
! CTCTTTCATTTGTTGCGGAT+AGG + chr7_2:55433090-55433109 Msa1063510:five_prime_UTR 40.0%
GGGAAGATTGAAGATGTTTC+TGG - chr7_2:55433244-55433263 None:intergenic 40.0%
!! CCTTGATGGATTGTGATGTT+AGG - chr7_2:55433265-55433284 None:intergenic 40.0%
CCTAACATCACAATCCATCA+AGG + chr7_2:55433262-55433281 Msa1063510:five_prime_UTR 40.0%
! TGTTACGCAGTTTGAAGTTG+AGG + chr7_2:55433517-55433536 Msa1063510:intron 40.0%
AGTTGAGGAAAAAACATGGC+TGG + chr7_2:55433532-55433551 Msa1063510:exon 40.0%
!!! CTGGTGGCAATTTTTTGCAT+AGG + chr7_2:55433551-55433570 Msa1063510:CDS 40.0%
GTCAATGAAGTGGTTGTCAA+TGG + chr7_2:55433589-55433608 Msa1063510:CDS 40.0%
TTGTTCCAATTAAGAGAGGG+AGG + chr7_2:55433657-55433676 Msa1063510:intron 40.0%
TGTTCCAATTAAGAGAGGGA+GGG + chr7_2:55433658-55433677 Msa1063510:intron 40.0%
!! ATCAGTATCGGTAGGAACAA+GGG - chr7_2:55434044-55434063 None:intergenic 40.0%
!! TATCAGTATCGGTAGGAACA+AGG - chr7_2:55434045-55434064 None:intergenic 40.0%
GGCTGAAAGAGGGTTATATA+GGG - chr7_2:55434408-55434427 None:intergenic 40.0%
TGGCTGAAAGAGGGTTATAT+AGG - chr7_2:55434409-55434428 None:intergenic 40.0%
! TGTGAAAAAGGAGCATGATG+AGG - chr7_2:55434464-55434483 None:intergenic 40.0%
ATGTGTGGAAGGTTTGCATA+AGG - chr7_2:55434492-55434511 None:intergenic 40.0%
TATGGATTCAAATGTAGGCC+TGG - chr7_2:55434515-55434534 None:intergenic 40.0%
TGAATCCATATTAGGACCTC+TGG + chr7_2:55434525-55434544 Msa1063510:intron 40.0%
TTTGAACCCATCTACGTTGT+AGG - chr7_2:55434551-55434570 None:intergenic 40.0%
! ACGTAGATGGGTTCAAAAGA+AGG + chr7_2:55434554-55434573 Msa1063510:intron 40.0%
!! AAGGAATCTGATTGGTTCTG+TGG + chr7_2:55434573-55434592 Msa1063510:intron 40.0%
! CAACTAAGCCTTATCCTACT+AGG + chr7_2:55434817-55434836 Msa1063510:intron 40.0%
CTATTCCACCTAGTAGGATA+AGG - chr7_2:55434828-55434847 None:intergenic 40.0%
CTTATCCTACTAGGTGGAAT+AGG + chr7_2:55434826-55434845 Msa1063510:intron 40.0%
TAAAGCCTATTCCACCTAGT+AGG - chr7_2:55434834-55434853 None:intergenic 40.0%
ACTAGGTGGAATAGGCTTTA+TGG + chr7_2:55434834-55434853 Msa1063510:intron 40.0%
CTCCCTCTATCTCTAACTAT+TGG + chr7_2:55434933-55434952 Msa1063510:intron 40.0%
TGATCAACCGTCTTTGCATA+TGG + chr7_2:55434969-55434988 Msa1063510:intron 40.0%
! CGTCTTTGCATATGGTTCTA+TGG + chr7_2:55434977-55434996 Msa1063510:intron 40.0%
! ATTGGCTATTAAGGTGCTCA+TGG + chr7_2:55435170-55435189 Msa1063510:intron 40.0%
! TTGGCTATTAAGGTGCTCAT+GGG + chr7_2:55435171-55435190 Msa1063510:intron 40.0%
GTGATGGTAATAAGCACACA+AGG - chr7_2:55435268-55435287 None:intergenic 40.0%
AGAGTTAGCTGAGCAGTTAA+AGG + chr7_2:55435473-55435492 Msa1063510:CDS 40.0%
TGAGGAAAAAACATGGCTGG+TGG + chr7_2:55433535-55433554 Msa1063510:exon 45.0%
! TTGTCAATGGTCTTGCCAAC+AGG + chr7_2:55433602-55433621 Msa1063510:CDS 45.0%
ACGAGCATGTGAATCTAACG+AGG - chr7_2:55433777-55433796 None:intergenic 45.0%
CATTGTCATTAGGTGGCTTG+TGG + chr7_2:55433913-55433932 Msa1063510:intron 45.0%
TAAAATCGATGTTCCCCCTC+AGG + chr7_2:55434005-55434024 Msa1063510:intron 45.0%
AAAATCGATGTTCCCCCTCA+GGG + chr7_2:55434006-55434025 Msa1063510:intron 45.0%
TATGGTTTCAAACCCTGAGG+GGG - chr7_2:55434021-55434040 None:intergenic 45.0%
GTATGGTTTCAAACCCTGAG+GGG - chr7_2:55434022-55434041 None:intergenic 45.0%
GGTATGGTTTCAAACCCTGA+GGG - chr7_2:55434023-55434042 None:intergenic 45.0%
TATCGGTAGGAACAAGGGTA+TGG - chr7_2:55434039-55434058 None:intergenic 45.0%
AGTGAGTGAGCATATCAGCA+CGG - chr7_2:55434180-55434199 None:intergenic 45.0%
!! CTTTTGACTCACGCATCTGT+TGG + chr7_2:55434230-55434249 Msa1063510:intron 45.0%
AGCAGCATATGGCTGAAAGA+GGG - chr7_2:55434418-55434437 None:intergenic 45.0%
CAGCCATATGCTGCTCAATT+TGG + chr7_2:55434423-55434442 Msa1063510:intron 45.0%
! GAAAAAGGAGCATGATGAGG+TGG - chr7_2:55434461-55434480 None:intergenic 45.0%
! CTAAGCCTTATCCTACTAGG+TGG + chr7_2:55434820-55434839 Msa1063510:intron 45.0%
AAGTGCCATCTTAGGTGGTT+CGG - chr7_2:55435020-55435039 None:intergenic 45.0%
! CTGTAAAGTGCCATCTTAGG+TGG - chr7_2:55435025-55435044 None:intergenic 45.0%
!! CTGCAAACCTCTGAAATGCA+GGG - chr7_2:55435324-55435343 None:intergenic 45.0%
!! ACTGCAAACCTCTGAAATGC+AGG - chr7_2:55435325-55435344 None:intergenic 45.0%
CATTTCAGAGGTTTGCAGTG+AGG + chr7_2:55435326-55435345 Msa1063510:CDS 45.0%
! GTCAACCCGATTTGTTCACA+TGG - chr7_2:55435418-55435437 None:intergenic 45.0%
GGACCTTCCGAAAAAAATGG+AGG + chr7_2:55435494-55435513 Msa1063510:CDS 45.0%
! ATTTGTGGCTGCTTTGCTGA+AGG + chr7_2:55435635-55435654 Msa1063510:three_prime_UTR 45.0%
! TTTGTGGCTGCTTTGCTGAA+GGG + chr7_2:55435636-55435655 Msa1063510:three_prime_UTR 45.0%
!!! ATTTATTTAATTTTGAATTT+TGG + chr7_2:55433492-55433511 Msa1063510:intron 5.0%
!!! TTTTATTTTTTTGATATTTA+AGG + chr7_2:55433634-55433653 Msa1063510:intron 5.0%
TGACACGTGCGAGGGTTATT+GGG - chr7_2:55433156-55433175 None:intergenic 50.0%
GAAAACAGTGACACGTGCGA+GGG - chr7_2:55433164-55433183 None:intergenic 50.0%
AGAAAACAGTGACACGTGCG+AGG - chr7_2:55433165-55433184 None:intergenic 50.0%
CTCTCCCTCCCTCTCTTAAT+TGG - chr7_2:55433665-55433684 None:intergenic 50.0%
GTGGTGCAATGCATAAGCTG+CGG - chr7_2:55433942-55433961 None:intergenic 50.0%
GGGTATGGTTTCAAACCCTG+AGG - chr7_2:55434024-55434043 None:intergenic 50.0%
CTGATGACAAACACGAGGCT+TGG - chr7_2:55434134-55434153 None:intergenic 50.0%
! GTGTGCTGATGACAAACACG+AGG - chr7_2:55434139-55434158 None:intergenic 50.0%
GTGAGTGAGCATATCAGCAC+GGG - chr7_2:55434179-55434198 None:intergenic 50.0%
GAGCAGCATATGGCTGAAAG+AGG - chr7_2:55434419-55434438 None:intergenic 50.0%
TGCAAACCTTCCACACATCC+AGG + chr7_2:55434494-55434513 Msa1063510:intron 50.0%
CAAATGTAGGCCTGGATGTG+TGG - chr7_2:55434507-55434526 None:intergenic 50.0%
GTAGGCCAGAGGTCCTAATA+TGG - chr7_2:55434533-55434552 None:intergenic 50.0%
CTCTGGCCTACAACGTAGAT+GGG + chr7_2:55434542-55434561 Msa1063510:intron 50.0%
CATGTCCGAACCACCTAAGA+TGG + chr7_2:55435012-55435031 Msa1063510:intron 50.0%
ACACGTGCGAGGGTTATTGG+GGG - chr7_2:55433154-55433173 None:intergenic 55.0%
GACACGTGCGAGGGTTATTG+GGG - chr7_2:55433155-55433174 None:intergenic 55.0%
GTGACACGTGCGAGGGTTAT+TGG - chr7_2:55433157-55433176 None:intergenic 55.0%
GTGCAATGCATAAGCTGCGG+CGG - chr7_2:55433939-55433958 None:intergenic 55.0%
CAGACGCAAGACTTGCAAGG+GGG - chr7_2:55434110-55434129 None:intergenic 55.0%
CCAGACGCAAGACTTGCAAG+GGG - chr7_2:55434111-55434130 None:intergenic 55.0%
GCCAGACGCAAGACTTGCAA+GGG - chr7_2:55434112-55434131 None:intergenic 55.0%
GAGCATGATGAGGTGGCAAG+GGG - chr7_2:55434454-55434473 None:intergenic 55.0%
GGAGCATGATGAGGTGGCAA+GGG - chr7_2:55434455-55434474 None:intergenic 55.0%
! AGGAGCATGATGAGGTGGCA+AGG - chr7_2:55434456-55434475 None:intergenic 55.0%
TGTAGGCCTGGATGTGTGGA+AGG - chr7_2:55434503-55434522 None:intergenic 55.0%
CCATCTACGTTGTAGGCCAG+AGG - chr7_2:55434544-55434563 None:intergenic 55.0%
CCTCTGGCCTACAACGTAGA+TGG + chr7_2:55434541-55434560 Msa1063510:intron 55.0%
AGCAGACTGCAGAGGCAGAA+GGG + chr7_2:55434598-55434617 Msa1063510:intron 55.0%
TTCGCAGCCCTGCATTTCAG+AGG + chr7_2:55435314-55435333 Msa1063510:intron 55.0%
CCCCTTGCAAGTCTTGCGTC+TGG + chr7_2:55434108-55434127 Msa1063510:intron 60.0%
GGCCAGACGCAAGACTTGCA+AGG - chr7_2:55434113-55434132 None:intergenic 60.0%
GTCATCAGCACACCCTCTGC+TGG + chr7_2:55434146-55434165 Msa1063510:intron 60.0%
CTTCTGCCTCTGCAGTCTGC+TGG - chr7_2:55434599-55434618 None:intergenic 60.0%
CAGCAGACTGCAGAGGCAGA+AGG + chr7_2:55434597-55434616 Msa1063510:intron 60.0%
TCAGCACACCCTCTGCTGGC+TGG + chr7_2:55434150-55434169 Msa1063510:intron 65.0%
! ACGGGTTGCCAGCCAGCAGA+GGG - chr7_2:55434161-55434180 None:intergenic 65.0%
CTGTGGCCAGCAGACTGCAG+AGG + chr7_2:55434590-55434609 Msa1063510:intron 65.0%
! CACGGGTTGCCAGCCAGCAG+AGG - chr7_2:55434162-55434181 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 55433086 55435943 55433086 ID=Msa1063510;Name=Msa1063510
chr7_2 mRNA 55433086 55435943 55433086 ID=Msa1063510-mRNA-1;Parent=Msa1063510;Name=Msa1063510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=218|1|1|1|0.5|0.4|5|316|72
chr7_2 exon 55433086 55433283 55433086 ID=Msa1063510-mRNA-1:exon:10346;Parent=Msa1063510-mRNA-1
chr7_2 exon 55433527 55433623 55433527 ID=Msa1063510-mRNA-1:exon:10347;Parent=Msa1063510-mRNA-1
chr7_2 exon 55435321 55435382 55435321 ID=Msa1063510-mRNA-1:exon:10348;Parent=Msa1063510-mRNA-1
chr7_2 exon 55435457 55435515 55435457 ID=Msa1063510-mRNA-1:exon:10349;Parent=Msa1063510-mRNA-1
chr7_2 exon 55435607 55435943 55435607 ID=Msa1063510-mRNA-1:exon:10350;Parent=Msa1063510-mRNA-1
chr7_2 five_prime_UTR 55433086 55433283 55433086 ID=Msa1063510-mRNA-1:five_prime_utr;Parent=Msa1063510-mRNA-1
chr7_2 five_prime_UTR 55433527 55433546 55433527 ID=Msa1063510-mRNA-1:five_prime_utr;Parent=Msa1063510-mRNA-1
chr7_2 CDS 55433547 55433623 55433547 ID=Msa1063510-mRNA-1:cds;Parent=Msa1063510-mRNA-1
chr7_2 CDS 55435321 55435382 55435321 ID=Msa1063510-mRNA-1:cds;Parent=Msa1063510-mRNA-1
chr7_2 CDS 55435457 55435515 55435457 ID=Msa1063510-mRNA-1:cds;Parent=Msa1063510-mRNA-1
chr7_2 CDS 55435607 55435627 55435607 ID=Msa1063510-mRNA-1:cds;Parent=Msa1063510-mRNA-1
chr7_2 three_prime_UTR 55435628 55435943 55435628 ID=Msa1063510-mRNA-1:three_prime_utr;Parent=Msa1063510-mRNA-1
Gene Sequence

>Msa1063510

ATGGCTGGTGGCAATTTTTTGCATAGGGTTATCTCTTACTTTGTCAATGAAGTGGTTGTCAATGGTCTTGCCAACAGCCCTGCATTTCAGAGGTTTGCAGTGAGGACATCAAAGAATATGGAAGAAATTTCAAAAAAGGCTATTCAAACGCAGAAAGAGTTAGCTGAGCAGTTAAAGGACCTTCCGAAAAAAATGGAGTCTTTCAAGAACCAGCAGTGA

Protein sequence

>Msa1063510

MAGGNFLHRVISYFVNEVVVNGLANSPAFQRFAVRTSKNMEEISKKAIQTQKELAEQLKDLPKKMESFKNQQ*