AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029260 MtrunA17_Chr1g0186001 100.000 217 0 0 1 217 1 217 8.18e-163 447
Msa0029260 MtrunA17_Chr8g0381851 65.919 223 62 5 1 217 1 215 1.36e-99 288
Msa0029260 MtrunA17_Chr4g0050311 68.947 190 52 3 35 217 9 198 3.05e-88 258
Msa0029260 MtrunA17_Chr1g0182761 63.687 179 58 1 46 217 105 283 8.98e-62 194
Msa0029260 MtrunA17_Chr1g0170731 57.609 92 32 1 101 192 3 87 2.05e-32 113
Msa0029260 MtrunA17_Chr3g0087861 36.872 179 100 7 43 211 454 629 1.05e-21 92.8
Msa0029260 MtrunA17_Chr8g0351991 36.170 141 77 6 79 211 623 758 2.99e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029260 AT5G51120.1 78.804 184 37 2 35 217 45 227 8.59e-103 296
Msa0029260 AT5G65260.1 69.683 221 61 4 1 217 1 219 3.20e-102 295
Msa0029260 AT5G10350.1 68.326 221 61 4 1 217 1 216 8.16e-102 294
Msa0029260 AT5G51120.2 64.706 221 40 2 35 217 45 265 1.19e-94 277
Msa0029260 AT5G10350.2 68.599 207 56 4 1 203 1 202 3.37e-93 271
Msa0029260 AT5G51120.3 82.014 139 24 1 80 217 4 142 1.18e-80 237
Msa0029260 AT5G10350.4 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0029260 AT5G10350.3 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0029260 AT5G10350.5 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0029260 AT5G10350.6 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0029260 AT3G12640.4 33.636 110 62 2 89 187 467 576 1.41e-12 66.6
Msa0029260 AT3G12640.2 33.636 110 62 2 89 187 499 608 1.65e-12 66.2
Msa0029260 AT3G12640.3 33.636 110 62 2 89 187 499 608 1.65e-12 66.2
Msa0029260 AT3G12640.1 33.636 110 62 2 89 187 475 584 1.74e-12 66.2
Msa0029260 AT2G24350.2 32.857 140 80 6 35 165 254 388 4.07e-11 62.0
Msa0029260 AT2G24350.1 32.857 140 80 6 35 165 383 517 7.22e-11 61.6

Find 81 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAAAGAATATTATAAA+AGG 0.204372 1_1:+54562155 Msa0029260:five_prime_UTR
CAGGAAGAGCACGAAGTTTA+TGG 0.241947 1_1:+54562301 Msa0029260:CDS
GTTCTTATTCTCAACTTAAT+AGG 0.248384 1_1:+54566613 Msa0029260:exon
ACAATATTGACAGACAAATT+TGG 0.277446 1_1:+54565098 Msa0029260:CDS
TTGTAATAATGTTTATTTGA+TGG 0.287713 1_1:+54566688 Msa0029260:three_prime_UTR
TCAGAAATTTATATGAATTT+CGG 0.301138 1_1:+54566952 Msa0029260:three_prime_UTR
AAATGCTGTTGGACTTCTTC+AGG 0.339186 1_1:-54565047 None:intergenic
TTAAATGCCCTTAACTGTTA+AGG 0.350727 1_1:+54566745 Msa0029260:three_prime_UTR
GTTGAGAATAAGAACTAGTA+TGG 0.363623 1_1:-54566605 None:intergenic
ATGAATTTCGGTGATCGAAT+TGG 0.373691 1_1:+54566964 Msa0029260:three_prime_UTR
TCTTTCCACCATATGCTTAC+GGG 0.386901 1_1:+54565401 Msa0029260:CDS
ATGTACATCCTTAACAGTTA+AGG 0.397703 1_1:-54566753 None:intergenic
GCAAAACGTACAAATGTTCC+TGG 0.402106 1_1:+54565313 Msa0029260:CDS
TTCTTTCCACCATATGCTTA+CGG 0.403589 1_1:+54565400 Msa0029260:CDS
TCTACATAAGCAAATCCTTT+CGG 0.404767 1_1:-54565125 None:intergenic
CCTAACCTTGGTGGTGTGAT+TGG 0.419662 1_1:-54562404 None:intergenic
TGTACATCCTTAACAGTTAA+GGG 0.419777 1_1:-54566752 None:intergenic
TTCTGTATCTCAAGCTGAAA+AGG 0.437005 1_1:+54562753 Msa0029260:CDS
ATTAAAAGAATATTATAAAA+GGG 0.443442 1_1:+54562156 Msa0029260:five_prime_UTR
CTTCCGTACTGCTTCAATCC+AGG 0.447125 1_1:-54565331 None:intergenic
AAAGAGATGGGCGCTGTTCA+AGG 0.456481 1_1:+54562580 Msa0029260:CDS
AGACGATAGAGTAGCGAAGA+TGG 0.465591 1_1:+54562276 Msa0029260:exon
AATAGTGGAGGCAACTATGC+AGG 0.472943 1_1:+54566840 Msa0029260:three_prime_UTR
ACATCTTTATTATAAAGATA+AGG 0.480340 1_1:+54566641 Msa0029260:three_prime_UTR
CTGCTGGTTTCCGCGGTAGG+AGG 0.481689 1_1:+54565359 Msa0029260:CDS
ATAGAAGACCCACCCGATAC+AGG 0.483334 1_1:+54566582 Msa0029260:CDS
TCAAGCTGAAAAGGAGGAAG+TGG 0.486267 1_1:+54562762 Msa0029260:CDS
ATCCATGTCAACCTCTTCAT+CGG 0.493847 1_1:-54562335 None:intergenic
CTCCTACCGCGGAAACCAGC+AGG 0.495710 1_1:-54565358 None:intergenic
TAAACTATTCAGTTCAATGT+TGG 0.496084 1_1:+54566910 Msa0029260:three_prime_UTR
AGAACTAGTATGGCCTGTAT+CGG 0.496323 1_1:-54566595 None:intergenic
ATAGCTTACCCGTAAGCATA+TGG 0.502661 1_1:-54565409 None:intergenic
TCCATGTCAACCTCTTCATC+GGG 0.505267 1_1:-54562334 None:intergenic
GAACGACAAGGAGAAGAAGA+AGG 0.509991 1_1:+54562243 Msa0029260:five_prime_UTR
GAACTAGTATGGCCTGTATC+GGG 0.512109 1_1:-54566594 None:intergenic
GAGGTTTACCTGTGCAATAG+TGG 0.512371 1_1:+54566825 Msa0029260:three_prime_UTR
TTTAAAGTTAGTTTGAAGCA+GGG 0.512660 1_1:+54567009 Msa0029260:three_prime_UTR
AAGAATGGTGCAGGCATGAA+AGG 0.514431 1_1:-54565382 None:intergenic
TTAAATGAAACTGAATTGCA+TGG 0.518323 1_1:+54565185 Msa0029260:CDS
TAAGCATATGGTGGAAAGAA+TGG 0.526698 1_1:-54565397 None:intergenic
TCGAATTGGTTATGTGCTGT+TGG 0.529283 1_1:+54566978 Msa0029260:three_prime_UTR
CACAGGACTGAAAATGCTGT+TGG 0.529319 1_1:-54565058 None:intergenic
TAGAGTAGCGAAGATGGAGC+AGG 0.531579 1_1:+54562282 Msa0029260:exon
GACAAATTTGGTCAACCGAA+AGG 0.538920 1_1:+54565110 Msa0029260:CDS
TATGGTGGAAAGAATGGTGC+AGG 0.545682 1_1:-54565391 None:intergenic
CGGGTGGGTCTTCTATATCT+CGG 0.548551 1_1:-54566575 None:intergenic
GCATGAAAGGCCTCCTACCG+CGG 0.549694 1_1:-54565369 None:intergenic
AACCCTAACCCTAACCTTGG+TGG 0.550125 1_1:-54562413 None:intergenic
GACTCTGTTCACAGTACCAC+AGG 0.550448 1_1:-54565075 None:intergenic
CAGGTAAACCTCAATGACTC+AGG 0.554663 1_1:-54566814 None:intergenic
ATTGCATGGCCGACAGCTGA+AGG 0.563098 1_1:+54565199 Msa0029260:CDS
CAGTACGGAAGAAGACCTGC+TGG 0.568352 1_1:+54565343 Msa0029260:CDS
GACCTGCTGGTTTCCGCGGT+AGG 0.570934 1_1:+54565356 Msa0029260:CDS
AGCTAAGGTTGAGAAAGAGA+TGG 0.576917 1_1:+54562567 Msa0029260:CDS
TCAAATAAACATTATTACAA+TGG 0.582290 1_1:-54566685 None:intergenic
GATGCTCGATCGATCTATGT+TGG 0.582767 1_1:+54562784 Msa0029260:CDS
TCAATGACTCAGGGAAAATG+AGG 0.585147 1_1:-54566804 None:intergenic
AGTTGCCTCCACTATTGCAC+AGG 0.586210 1_1:-54566833 None:intergenic
ATGTACTATATCGACAAAGT+AGG 0.590533 1_1:+54566774 Msa0029260:three_prime_UTR
CTTATTCTCAACTTAATAGG+CGG 0.591121 1_1:+54566616 Msa0029260:three_prime_UTR
GCTAAGGTTGAGAAAGAGAT+GGG 0.591216 1_1:+54562568 Msa0029260:CDS
TTGATGTTCAGCATCTATGT+CGG 0.596596 1_1:-54562359 None:intergenic
CTAGTATGGCCTGTATCGGG+TGG 0.600648 1_1:-54566591 None:intergenic
TCCCGATGAAGAGGTTGACA+TGG 0.607730 1_1:+54562333 Msa0029260:CDS
ATAGTGGAGGCAACTATGCA+GGG 0.608735 1_1:+54566841 Msa0029260:three_prime_UTR
GTTCCTGGATTGAAGCAGTA+CGG 0.610328 1_1:+54565328 Msa0029260:CDS
TCTTCGCGAAATGCAAGCTA+AGG 0.612879 1_1:+54562552 Msa0029260:CDS
TGTATCTCAAGCTGAAAAGG+AGG 0.614985 1_1:+54562756 Msa0029260:CDS
TGAGATACAGAAGACCCAGC+AGG 0.620132 1_1:-54562742 None:intergenic
AATTGGAGGATATGAAGAAG+AGG 0.623414 1_1:+54562500 Msa0029260:CDS
GTTTGAAGCAGGGTTTACTG+TGG 0.625360 1_1:+54567019 Msa0029260:three_prime_UTR
AGAAGACCTGCTGGTTTCCG+CGG 0.627211 1_1:+54565352 Msa0029260:CDS
TAGTATGGCCTGTATCGGGT+GGG 0.627864 1_1:-54566590 None:intergenic
GCTTACCCGTAAGCATATGG+TGG 0.644904 1_1:-54565406 None:intergenic
GAAGAGGCTGAAAGAGATCG+AGG 0.648698 1_1:+54562516 Msa0029260:CDS
TGCTGACATTCCCGATGAAG+AGG 0.653227 1_1:+54562324 Msa0029260:CDS
AGGTAAACCTCAATGACTCA+GGG 0.660836 1_1:-54566813 None:intergenic
GTTTACCTGTGCAATAGTGG+AGG 0.663378 1_1:+54566828 Msa0029260:three_prime_UTR
CGCATCCAATCACACCACCA+AGG 0.672127 1_1:+54562399 Msa0029260:CDS
GAGAGAGTGAGAGAACGACA+AGG 0.682441 1_1:+54562231 Msa0029260:five_prime_UTR
ATAGATGCTGAACATCAAGA+AGG 0.684507 1_1:+54562364 Msa0029260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCATAAATAAAATCAA+AGG - chr1_1:54562828-54562847 None:intergenic 10.0%
!!! AATGTTGATTTAATTTTTTT+TGG + chr1_1:54563101-54563120 Msa0029260:intron 10.0%
!!! ATGTTGATTTAATTTTTTTT+GGG + chr1_1:54563102-54563121 Msa0029260:intron 10.0%
!!! AAGATAGTTTTTTTAAAAAA+TGG - chr1_1:54563620-54563639 None:intergenic 10.0%
!! ATTATAAACATGTAAATATT+TGG - chr1_1:54564530-54564549 None:intergenic 10.0%
!!! ATGATTTTTATTTTATGATT+TGG + chr1_1:54566339-54566358 Msa0029260:intron 10.0%
!!! AAAATGTTTTTATTTATTCA+CGG + chr1_1:54566499-54566518 Msa0029260:intron 10.0%
!! AATTTAATGTTTGGATTATT+GGG + chr1_1:54563051-54563070 Msa0029260:intron 15.0%
!!! TGTTGATTTAATTTTTTTTG+GGG + chr1_1:54563103-54563122 Msa0029260:intron 15.0%
!!! AAATGTTCTAAATTCTAATA+GGG - chr1_1:54563365-54563384 None:intergenic 15.0%
!!! TAGTTTTTTTAAAAAATGGA+AGG - chr1_1:54563616-54563635 None:intergenic 15.0%
!! TTAAAAAAACTATCTTGAAA+AGG + chr1_1:54563624-54563643 Msa0029260:intron 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr1_1:54564206-54564225 Msa0029260:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr1_1:54564207-54564226 Msa0029260:intron 15.0%
!! TTTAAAAAATTTGGATGATA+TGG - chr1_1:54564484-54564503 None:intergenic 15.0%
!!! TAGATAGATCTAAAATTATA+TGG + chr1_1:54564725-54564744 Msa0029260:intron 15.0%
!! ATAATTCAATTAAAACCAAA+TGG - chr1_1:54565273-54565292 None:intergenic 15.0%
!!! ATTTGGTTTTAATTGAATTA+TGG + chr1_1:54565272-54565291 Msa0029260:intron 15.0%
!!! ATTTTTATTTTATGATTTGG+TGG + chr1_1:54566342-54566361 Msa0029260:intron 15.0%
!! AATAATTAAACATAAAGCAT+GGG - chr1_1:54566525-54566544 None:intergenic 15.0%
!! TAATAATTAAACATAAAGCA+TGG - chr1_1:54566526-54566545 None:intergenic 15.0%
!! ACATCTTTATTATAAAGATA+AGG + chr1_1:54566641-54566660 Msa0029260:three_prime_UTR 15.0%
!! TCAAATAAACATTATTACAA+TGG - chr1_1:54566688-54566707 None:intergenic 15.0%
!! TTGTAATAATGTTTATTTGA+TGG + chr1_1:54566688-54566707 Msa0029260:three_prime_UTR 15.0%
!! TCAGAAATTTATATGAATTT+CGG + chr1_1:54566952-54566971 Msa0029260:three_prime_UTR 15.0%
!!! TCTTAATTTTATATGCAACA+AGG - chr1_1:54562125-54562144 None:intergenic 20.0%
!! TAGGTTAAGAATTTAATGTT+TGG + chr1_1:54563042-54563061 Msa0029260:intron 20.0%
!! GAATTTAATGTTTGGATTAT+TGG + chr1_1:54563050-54563069 Msa0029260:intron 20.0%
!!! GTTGATTTAATTTTTTTTGG+GGG + chr1_1:54563104-54563123 Msa0029260:intron 20.0%
!!! AATGTCGATTTTTGTTTTTT+TGG + chr1_1:54563241-54563260 Msa0029260:intron 20.0%
!!! ATGTCGATTTTTGTTTTTTT+GGG + chr1_1:54563242-54563261 Msa0029260:intron 20.0%
!!! AATGTTCTAAATTCTAATAG+GGG - chr1_1:54563364-54563383 None:intergenic 20.0%
!!! CAAATGTTCTAAATTCTAAT+AGG - chr1_1:54563366-54563385 None:intergenic 20.0%
!!! CTATTAGAATTTAGAACATT+TGG + chr1_1:54563364-54563383 Msa0029260:intron 20.0%
!! AAATTAATGAAAAGTGAAAC+AGG - chr1_1:54563520-54563539 None:intergenic 20.0%
!!! AATTTTATTTTTAGAGTGTG+TGG + chr1_1:54563535-54563554 Msa0029260:intron 20.0%
!! CTATTTAACAACACTTAATT+CGG - chr1_1:54563866-54563885 None:intergenic 20.0%
!! TATGAAAGATTATGAAATAG+CGG + chr1_1:54563962-54563981 Msa0029260:intron 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG - chr1_1:54564143-54564162 None:intergenic 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - chr1_1:54564144-54564163 None:intergenic 20.0%
!!! TTTTAAGCACTTAAATTTCA+TGG + chr1_1:54564642-54564661 Msa0029260:intron 20.0%
!! TTTAAGCACTTAAATTTCAT+GGG + chr1_1:54564643-54564662 Msa0029260:intron 20.0%
!!! TAATTTTAGATCTATCTAGA+TGG - chr1_1:54564723-54564742 None:intergenic 20.0%
!!! TTTTTGAGATTTAAATGACA+TGG - chr1_1:54564960-54564979 None:intergenic 20.0%
!! TTAAATCTCAAAAACTTCAA+CGG + chr1_1:54564966-54564985 Msa0029260:intron 20.0%
!!! ATGTTTACTTTTTGTGTAAA+TGG + chr1_1:54565534-54565553 Msa0029260:intron 20.0%
!! CGATATTTAAATAAAACTAG+TGG + chr1_1:54565575-54565594 Msa0029260:intron 20.0%
!! ATTTAAATAAAACTAGTGGA+TGG + chr1_1:54565579-54565598 Msa0029260:intron 20.0%
!! ATAGTAATACATCTAATGAT+AGG + chr1_1:54565615-54565634 Msa0029260:intron 20.0%
!! AAAACTGTATATATACTTGT+TGG - chr1_1:54565789-54565808 None:intergenic 20.0%
!!! AACAAGTATATATACAGTTT+TGG + chr1_1:54565788-54565807 Msa0029260:intron 20.0%
!! TAGCTTATTCTGATATAATA+AGG + chr1_1:54566052-54566071 Msa0029260:intron 20.0%
!! ATATTTAGAAACAACTTGTA+CGG + chr1_1:54566146-54566165 Msa0029260:intron 20.0%
!! AATATTAAAAAAACAAAGCC+TGG - chr1_1:54566466-54566485 None:intergenic 20.0%
!!! CAATAGTTTACTAAGTTTTT+CGG + chr1_1:54566872-54566891 Msa0029260:three_prime_UTR 20.0%
! ATTCAGATCTGTTTATCATT+TGG + chr1_1:54562674-54562693 Msa0029260:intron 25.0%
!! TTATCATTTGGCTCAATTAT+TGG + chr1_1:54562686-54562705 Msa0029260:intron 25.0%
!! TTGCTTACAGTTTGAATTTT+AGG + chr1_1:54563023-54563042 Msa0029260:intron 25.0%
!! ATGTTCTAAATTCTAATAGG+GGG - chr1_1:54563363-54563382 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr1_1:54564120-54564139 None:intergenic 25.0%
!!! TGTTTTGGTTAATAACTAGT+AGG + chr1_1:54564230-54564249 Msa0029260:intron 25.0%
!!! GCTCTTATTGTTAGTTTTAA+TGG - chr1_1:54564397-54564416 None:intergenic 25.0%
!! ATTAAGTCAGATATGTTTTC+AGG - chr1_1:54564454-54564473 None:intergenic 25.0%
!!! CCTGGGTATTTTAAAAAATT+TGG - chr1_1:54564493-54564512 None:intergenic 25.0%
!!! CCAAATTTTTTAAAATACCC+AGG + chr1_1:54564490-54564509 Msa0029260:intron 25.0%
! CCATAACATTTACAAATGAT+CGG - chr1_1:54564562-54564581 None:intergenic 25.0%
! GAGTATACTAAAATAGTTAG+AGG + chr1_1:54564665-54564684 Msa0029260:intron 25.0%
! ACTAAAATAGTTAGAGGAAT+AGG + chr1_1:54564671-54564690 Msa0029260:intron 25.0%
! CTAAAATAGTTAGAGGAATA+GGG + chr1_1:54564672-54564691 Msa0029260:intron 25.0%
! AAAATGCATTAGATATGTGA+GGG - chr1_1:54564914-54564933 None:intergenic 25.0%
! AAAAATGCATTAGATATGTG+AGG - chr1_1:54564915-54564934 None:intergenic 25.0%
!!! TGGTTTCTAAAATATGAATC+AGG + chr1_1:54565007-54565026 Msa0029260:intron 25.0%
! ACAATATTGACAGACAAATT+TGG + chr1_1:54565098-54565117 Msa0029260:CDS 25.0%
! TTAAATGAAACTGAATTGCA+TGG + chr1_1:54565185-54565204 Msa0029260:CDS 25.0%
! ATTAAAACCAAATGGAAACA+TGG - chr1_1:54565265-54565284 None:intergenic 25.0%
! TGTATAACCAAAAACTACAT+AGG + chr1_1:54565750-54565769 Msa0029260:intron 25.0%
! GTATAACCAAAAACTACATA+GGG + chr1_1:54565751-54565770 Msa0029260:intron 25.0%
! TATTACCACATTTAATGATG+TGG - chr1_1:54566291-54566310 None:intergenic 25.0%
! ATAGAGAAAGAATGACAATT+AGG - chr1_1:54566414-54566433 None:intergenic 25.0%
! TTAATATTTCTTCACAATCC+AGG + chr1_1:54566445-54566464 Msa0029260:intron 25.0%
!! AAATAATTTTTCCATGCAGA+AGG + chr1_1:54566549-54566568 Msa0029260:intron 25.0%
!! AATAATTTTTCCATGCAGAA+GGG + chr1_1:54566550-54566569 Msa0029260:intron 25.0%
! GTTCTTATTCTCAACTTAAT+AGG + chr1_1:54566613-54566632 Msa0029260:exon 25.0%
! TAAACTATTCAGTTCAATGT+TGG + chr1_1:54566910-54566929 Msa0029260:three_prime_UTR 25.0%
!!! TTTTAAAGTTAGTTTGAAGC+AGG + chr1_1:54567008-54567027 Msa0029260:three_prime_UTR 25.0%
!! TTTAAAGTTAGTTTGAAGCA+GGG + chr1_1:54567009-54567028 Msa0029260:three_prime_UTR 25.0%
TACCATAGACAAAAATCTCT+CGG + chr1_1:54562199-54562218 Msa0029260:five_prime_UTR 30.0%
!! TTAACATGAATCGATTTTGC+AGG + chr1_1:54562477-54562496 Msa0029260:intron 30.0%
!!! TTTTTGATTTTAGATCCTGC+TGG + chr1_1:54562727-54562746 Msa0029260:intron 30.0%
!!! TTTTGATTTTAGATCCTGCT+GGG + chr1_1:54562728-54562747 Msa0029260:intron 30.0%
! ACTCAATTCTGCAATCTTTT+TGG + chr1_1:54562971-54562990 Msa0029260:intron 30.0%
TAATGTTTGGATTATTGGGA+TGG + chr1_1:54563055-54563074 Msa0029260:intron 30.0%
! GACTTTTCAGAAACATGTTA+AGG - chr1_1:54563166-54563185 None:intergenic 30.0%
TGAAAACTAAAACTGCTTGT+CGG - chr1_1:54563214-54563233 None:intergenic 30.0%
! TGTTCTAAATTCTAATAGGG+GGG - chr1_1:54563362-54563381 None:intergenic 30.0%
AAAACTAAAACTGCCTATTG+GGG - chr1_1:54563390-54563409 None:intergenic 30.0%
CAAAACTAAAACTGCCTATT+GGG - chr1_1:54563391-54563410 None:intergenic 30.0%
TCAAAACTAAAACTGCCTAT+TGG - chr1_1:54563392-54563411 None:intergenic 30.0%
! AGCTTTATATAACTAGCCAT+AGG - chr1_1:54563460-54563479 None:intergenic 30.0%
TAAGCACCTATAAAGTTGTT+TGG + chr1_1:54563479-54563498 Msa0029260:intron 30.0%
CCAATTCCAAACAACTTTAT+AGG - chr1_1:54563488-54563507 None:intergenic 30.0%
! CCTATAAAGTTGTTTGGAAT+TGG + chr1_1:54563485-54563504 Msa0029260:intron 30.0%
!!! TATTTTTAGAGTGTGTGGAA+TGG + chr1_1:54563540-54563559 Msa0029260:intron 30.0%
GGTAATTTAGAAATTGAGCA+TGG + chr1_1:54563706-54563725 Msa0029260:intron 30.0%
TCTGATATCATGTCCTTTAA+AGG + chr1_1:54563765-54563784 Msa0029260:intron 30.0%
GGAAACTAAAACACCTTTAA+AGG - chr1_1:54563781-54563800 None:intergenic 30.0%
AGGAAAACAAACTAATGCTA+GGG - chr1_1:54563802-54563821 None:intergenic 30.0%
GTTGTTAAATAGCAGTATAG+CGG + chr1_1:54563874-54563893 Msa0029260:intron 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr1_1:54564215-54564234 Msa0029260:intron 30.0%
ATATAACCCAAATTGGACTT+CGG + chr1_1:54564356-54564375 Msa0029260:intron 30.0%
AAATTTGGATGATATGGATC+TGG - chr1_1:54564478-54564497 None:intergenic 30.0%
CCGATCATTTGTAAATGTTA+TGG + chr1_1:54564559-54564578 Msa0029260:intron 30.0%
TATGGTAAACTTCTCATAAC+TGG + chr1_1:54564577-54564596 Msa0029260:intron 30.0%
TTAGATCTATCTAGATGGTT+TGG - chr1_1:54564718-54564737 None:intergenic 30.0%
ATATGGCCTATCTGTATTTA+TGG + chr1_1:54564742-54564761 Msa0029260:intron 30.0%
TCTACATAAGCAAATCCTTT+CGG - chr1_1:54565128-54565147 None:intergenic 30.0%
ATAAAAATACCTTCAGCTGT+CGG - chr1_1:54565211-54565230 None:intergenic 30.0%
! TGAATTATGGTTTTTCCTTC+AGG + chr1_1:54565285-54565304 Msa0029260:intron 30.0%
CAAAAGCAACAATGAATTCT+GGG - chr1_1:54565465-54565484 None:intergenic 30.0%
ACAAAAGCAACAATGAATTC+TGG - chr1_1:54565466-54565485 None:intergenic 30.0%
! GACATCCAATGTGTAAATTT+TGG + chr1_1:54565494-54565513 Msa0029260:intron 30.0%
AGATGCCAAAATTTACACAT+TGG - chr1_1:54565502-54565521 None:intergenic 30.0%
GGTATACACTACAGTTAAAA+TGG + chr1_1:54565844-54565863 Msa0029260:intron 30.0%
TACACTACAGTTAAAATGGA+TGG + chr1_1:54565848-54565867 Msa0029260:intron 30.0%
AGAGAATGAACGAACAATAA+AGG - chr1_1:54566234-54566253 None:intergenic 30.0%
TGTTAAAAATTGACTGTGAC+TGG + chr1_1:54566365-54566384 Msa0029260:intron 30.0%
GTTGAGAATAAGAACTAGTA+TGG - chr1_1:54566608-54566627 None:intergenic 30.0%
CTTATTCTCAACTTAATAGG+CGG + chr1_1:54566616-54566635 Msa0029260:three_prime_UTR 30.0%
TTAAATGCCCTTAACTGTTA+AGG + chr1_1:54566745-54566764 Msa0029260:three_prime_UTR 30.0%
TGTACATCCTTAACAGTTAA+GGG - chr1_1:54566755-54566774 None:intergenic 30.0%
ATGTACATCCTTAACAGTTA+AGG - chr1_1:54566756-54566775 None:intergenic 30.0%
ATGTACTATATCGACAAAGT+AGG + chr1_1:54566774-54566793 Msa0029260:three_prime_UTR 30.0%
TTGATGTTCAGCATCTATGT+CGG - chr1_1:54562362-54562381 None:intergenic 35.0%
ATAGATGCTGAACATCAAGA+AGG + chr1_1:54562364-54562383 Msa0029260:CDS 35.0%
!! TGAATCGATTTTGCAGGAAT+TGG + chr1_1:54562483-54562502 Msa0029260:intron 35.0%
AATTGGAGGATATGAAGAAG+AGG + chr1_1:54562500-54562519 Msa0029260:CDS 35.0%
TTCTGTATCTCAAGCTGAAA+AGG + chr1_1:54562753-54562772 Msa0029260:CDS 35.0%
TAGAACGTTTAGGTGTATGA+TGG + chr1_1:54562923-54562942 Msa0029260:intron 35.0%
! CAATTCTGCAATCTTTTTGG+CGG + chr1_1:54562974-54562993 Msa0029260:intron 35.0%
CAAAGATGCACCTAAAAACT+CGG - chr1_1:54563003-54563022 None:intergenic 35.0%
TTTGGATTATTGGGATGGAT+GGG + chr1_1:54563060-54563079 Msa0029260:intron 35.0%
AAAACTAAAACTGCTTGTCG+GGG - chr1_1:54563212-54563231 None:intergenic 35.0%
GAAAACTAAAACTGCTTGTC+GGG - chr1_1:54563213-54563232 None:intergenic 35.0%
!! TTTCAACTACTTGGTGCATA+TGG - chr1_1:54563306-54563325 None:intergenic 35.0%
!! GATCGTTGTTTTCAACTACT+TGG - chr1_1:54563315-54563334 None:intergenic 35.0%
ATTGATTGAACCAAAAACCC+TGG + chr1_1:54563423-54563442 Msa0029260:intron 35.0%
! AAAAGTGAAACAGGCTGTTT+TGG - chr1_1:54563511-54563530 None:intergenic 35.0%
!!! ATTGAGCATGGTTTTGTCAA+AGG + chr1_1:54563718-54563737 Msa0029260:intron 35.0%
GAGGAAAACAAACTAATGCT+AGG - chr1_1:54563803-54563822 None:intergenic 35.0%
!!! GCATTAGTTTGTTTTCCTCT+TGG + chr1_1:54563804-54563823 Msa0029260:intron 35.0%
!!! TAGTTTGTTTTCCTCTTGGA+AGG + chr1_1:54563808-54563827 Msa0029260:intron 35.0%
!! AGTTTGTTTTCCTCTTGGAA+GGG + chr1_1:54563809-54563828 Msa0029260:intron 35.0%
TTACAGATCGCAGAATATAG+CGG - chr1_1:54564028-54564047 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1_1:54564085-54564104 None:intergenic 35.0%
! AACTTGCACCTTAGTGTTTT+AGG + chr1_1:54564264-54564283 Msa0029260:intron 35.0%
CACAGAGATATAACCCAAAT+TGG + chr1_1:54564349-54564368 Msa0029260:intron 35.0%
TTGAAACCGAAGTCCAATTT+GGG - chr1_1:54564365-54564384 None:intergenic 35.0%
ATTGAAACCGAAGTCCAATT+TGG - chr1_1:54564366-54564385 None:intergenic 35.0%
ATTGGACTTCGGTTTCAATT+TGG + chr1_1:54564367-54564386 Msa0029260:intron 35.0%
ATAAGAGCTACTAGACCATT+TGG + chr1_1:54564409-54564428 Msa0029260:intron 35.0%
CATTCAGGTAATCAACCAAA+TGG - chr1_1:54564427-54564446 None:intergenic 35.0%
!! ATGTTTTCAGGATCACATTC+AGG - chr1_1:54564442-54564461 None:intergenic 35.0%
TGGTTTCTTACAAGTTACCT+GGG - chr1_1:54564510-54564529 None:intergenic 35.0%
TTGGTTTCTTACAAGTTACC+TGG - chr1_1:54564511-54564530 None:intergenic 35.0%
! GTTTGGCCTAAAGTTTTCTT+TGG - chr1_1:54564701-54564720 None:intergenic 35.0%
CATGGACCATAAATACAGAT+AGG - chr1_1:54564751-54564770 None:intergenic 35.0%
CTATCTGTATTTATGGTCCA+TGG + chr1_1:54564749-54564768 Msa0029260:intron 35.0%
!! AGCATTTGATGTGTTGATTC+TGG + chr1_1:54564881-54564900 Msa0029260:intron 35.0%
! GGAGTGTTAATTCATCAAAC+TGG + chr1_1:54564987-54565006 Msa0029260:intron 35.0%
AATCACTCCATGTTTCCATT+TGG + chr1_1:54565255-54565274 Msa0029260:intron 35.0%
! TAAGCATATGGTGGAAAGAA+TGG - chr1_1:54565400-54565419 None:intergenic 35.0%
TTCTTTCCACCATATGCTTA+CGG + chr1_1:54565400-54565419 Msa0029260:CDS 35.0%
! AGGAAAGTATACAGAACATG+AGG - chr1_1:54565674-54565693 None:intergenic 35.0%
! ATGCATCCCTATGTAGTTTT+TGG - chr1_1:54565760-54565779 None:intergenic 35.0%
CTACAGTTAAAATGGATGGA+TGG + chr1_1:54565852-54565871 Msa0029260:intron 35.0%
AGATTGTAGTCCATGCATTT+AGG + chr1_1:54565941-54565960 Msa0029260:intron 35.0%
GATTGTAGTCCATGCATTTA+GGG + chr1_1:54565942-54565961 Msa0029260:intron 35.0%
AAGTTACAAACACTCATGAC+AGG + chr1_1:54566087-54566106 Msa0029260:intron 35.0%
TTAGAAACAACTTGTACGGA+CGG + chr1_1:54566150-54566169 Msa0029260:intron 35.0%
! ACGAACAATAAAGGTATGCT+TGG - chr1_1:54566225-54566244 None:intergenic 35.0%
CATTGCCACATCATTAAATG+TGG + chr1_1:54566283-54566302 Msa0029260:intron 35.0%
GAGAAAGAATGACAATTAGG+AGG - chr1_1:54566411-54566430 None:intergenic 35.0%
! CACGAAGCTTCTTTTTACAT+AGG + chr1_1:54566719-54566738 Msa0029260:three_prime_UTR 35.0%
ATGAATTTCGGTGATCGAAT+TGG + chr1_1:54566964-54566983 Msa0029260:three_prime_UTR 35.0%
! CACCGAGAGATTTTTGTCTA+TGG - chr1_1:54562204-54562223 None:intergenic 40.0%
TAGACAAAAATCTCTCGGTG+CGG + chr1_1:54562204-54562223 Msa0029260:five_prime_UTR 40.0%
ATCCATGTCAACCTCTTCAT+CGG - chr1_1:54562338-54562357 None:intergenic 40.0%
AGGGTTAGGGTTAACGAATT+AGG + chr1_1:54562424-54562443 Msa0029260:intron 40.0%
GGGTTAGGGTTAACGAATTA+GGG + chr1_1:54562425-54562444 Msa0029260:intron 40.0%
AGGGTTAACGAATTAGGGTT+TGG + chr1_1:54562430-54562449 Msa0029260:intron 40.0%
GGGTTAACGAATTAGGGTTT+GGG + chr1_1:54562431-54562450 Msa0029260:intron 40.0%
!! ATCGATTTTGCAGGAATTGG+AGG + chr1_1:54562486-54562505 Msa0029260:intron 40.0%
AGCTAAGGTTGAGAAAGAGA+TGG + chr1_1:54562567-54562586 Msa0029260:CDS 40.0%
GCTAAGGTTGAGAAAGAGAT+GGG + chr1_1:54562568-54562587 Msa0029260:CDS 40.0%
TGTATCTCAAGCTGAAAAGG+AGG + chr1_1:54562756-54562775 Msa0029260:CDS 40.0%
AGTGCTCAAGTAGAACGTTT+AGG + chr1_1:54562913-54562932 Msa0029260:intron 40.0%
GTTTGGATTATTGGGATGGA+TGG + chr1_1:54563059-54563078 Msa0029260:intron 40.0%
!! GGGCTGAATGTTCTAGAAAA+GGG - chr1_1:54563192-54563211 None:intergenic 40.0%
CTGCACGTGATTGACTAATA+CGG + chr1_1:54563279-54563298 Msa0029260:intron 40.0%
TGCACGTGATTGACTAATAC+GGG + chr1_1:54563280-54563299 Msa0029260:intron 40.0%
TTAGAACATTTGGCCCCAAT+AGG + chr1_1:54563374-54563393 Msa0029260:intron 40.0%
TTGAACCAAAAACCCTGGTA+TGG + chr1_1:54563428-54563447 Msa0029260:intron 40.0%
TTGGAAGGGACATGTTATCA+GGG + chr1_1:54563823-54563842 Msa0029260:intron 40.0%
GCTATATCACTATCGCATAG+CGG + chr1_1:54563898-54563917 Msa0029260:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1_1:54564081-54564100 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1_1:54564082-54564101 None:intergenic 40.0%
!! TTGCACCTTAGTGTTTTAGG+TGG + chr1_1:54564267-54564286 Msa0029260:intron 40.0%
!! TGCACCTTAGTGTTTTAGGT+GGG + chr1_1:54564268-54564287 Msa0029260:intron 40.0%
AAGCATTACCATGCAGTACA+GGG - chr1_1:54564624-54564643 None:intergenic 40.0%
! AAAGCATTACCATGCAGTAC+AGG - chr1_1:54564625-54564644 None:intergenic 40.0%
GGGAGACCAAAGAAAACTTT+AGG + chr1_1:54564692-54564711 Msa0029260:intron 40.0%
TTATGGTCCATGGCAGAATA+TGG + chr1_1:54564759-54564778 Msa0029260:intron 40.0%
! TGTCGTTTGATCCATGTAGT+CGG + chr1_1:54564782-54564801 Msa0029260:intron 40.0%
!! TACCAAAGCTTTTTCCCACA+AGG - chr1_1:54564813-54564832 None:intergenic 40.0%
AAATGCTGTTGGACTTCTTC+AGG - chr1_1:54565050-54565069 None:intergenic 40.0%
GACAAATTTGGTCAACCGAA+AGG + chr1_1:54565110-54565129 Msa0029260:CDS 40.0%
GCAAAACGTACAAATGTTCC+TGG + chr1_1:54565313-54565332 Msa0029260:CDS 40.0%
TCTTTCCACCATATGCTTAC+GGG + chr1_1:54565401-54565420 Msa0029260:CDS 40.0%
ATAGCTTACCCGTAAGCATA+TGG - chr1_1:54565412-54565431 None:intergenic 40.0%
CATTAACAAGCACGCTTATG+TGG - chr1_1:54565644-54565663 None:intergenic 40.0%
! TCCTTGCAAGTGTACTTTTG+TGG + chr1_1:54565690-54565709 Msa0029260:intron 40.0%
! CCTTGCAAGTGTACTTTTGT+GGG + chr1_1:54565691-54565710 Msa0029260:intron 40.0%
CAGCAACAACACTAACTGAA+TGG + chr1_1:54565823-54565842 Msa0029260:intron 40.0%
! ACTGGATCAACAGTAGGTTT+TGG + chr1_1:54566383-54566402 Msa0029260:intron 40.0%
AGAACTAGTATGGCCTGTAT+CGG - chr1_1:54566598-54566617 None:intergenic 40.0%
TCAATGACTCAGGGAAAATG+AGG - chr1_1:54566807-54566826 None:intergenic 40.0%
! TCATTTTCCCTGAGTCATTG+AGG + chr1_1:54566806-54566825 Msa0029260:three_prime_UTR 40.0%
AGGTAAACCTCAATGACTCA+GGG - chr1_1:54566816-54566835 None:intergenic 40.0%
TCGAATTGGTTATGTGCTGT+TGG + chr1_1:54566978-54566997 Msa0029260:three_prime_UTR 40.0%
GAACGACAAGGAGAAGAAGA+AGG + chr1_1:54562243-54562262 Msa0029260:five_prime_UTR 45.0%
AGACGATAGAGTAGCGAAGA+TGG + chr1_1:54562276-54562295 Msa0029260:exon 45.0%
! CAGGAAGAGCACGAAGTTTA+TGG + chr1_1:54562301-54562320 Msa0029260:CDS 45.0%
TCCATGTCAACCTCTTCATC+GGG - chr1_1:54562337-54562356 None:intergenic 45.0%
CAATCACACCACCAAGGTTA+GGG + chr1_1:54562405-54562424 Msa0029260:intron 45.0%
GTTAACCCTAACCCTAACCT+TGG - chr1_1:54562419-54562438 None:intergenic 45.0%
TCTTCGCGAAATGCAAGCTA+AGG + chr1_1:54562552-54562571 Msa0029260:CDS 45.0%
TCAAGCTGAAAAGGAGGAAG+TGG + chr1_1:54562762-54562781 Msa0029260:CDS 45.0%
GATGCTCGATCGATCTATGT+TGG + chr1_1:54562784-54562803 Msa0029260:CDS 45.0%
! TTGGCGGTTTCCGAGTTTTT+AGG + chr1_1:54562990-54563009 Msa0029260:intron 45.0%
!! GGGGCTGAATGTTCTAGAAA+AGG - chr1_1:54563193-54563212 None:intergenic 45.0%
ACCAAAAACCCTGGTATGGT+AGG + chr1_1:54563432-54563451 Msa0029260:intron 45.0%
! ACCTACCATACCAGGGTTTT+TGG - chr1_1:54563436-54563455 None:intergenic 45.0%
CATAGGTACCTACCATACCA+GGG - chr1_1:54563443-54563462 None:intergenic 45.0%
AGTGTGTGGAATGGTTGAGA+TGG + chr1_1:54563549-54563568 Msa0029260:intron 45.0%
GTGTGTGGAATGGTTGAGAT+GGG + chr1_1:54563550-54563569 Msa0029260:intron 45.0%
GAATGGTTGAGATGGGAAAG+AGG + chr1_1:54563557-54563576 Msa0029260:intron 45.0%
GAGATGGGAAAGAGGTTGTA+TGG + chr1_1:54563565-54563584 Msa0029260:intron 45.0%
GTGTTGTACATGTAGCCAGT+TGG + chr1_1:54563663-54563682 Msa0029260:intron 45.0%
GTACATGTAGCCAGTTGGTT+TGG + chr1_1:54563668-54563687 Msa0029260:intron 45.0%
!! TGTAGCCAGTTGGTTTGGTT+TGG + chr1_1:54563673-54563692 Msa0029260:intron 45.0%
GATAACATGTCCCTTCCAAG+AGG - chr1_1:54563822-54563841 None:intergenic 45.0%
CTTGGAAGGGACATGTTATC+AGG + chr1_1:54563822-54563841 Msa0029260:intron 45.0%
GCTGTGCTATAGCATTGTTG+CGG + chr1_1:54563990-54564009 Msa0029260:intron 45.0%
GGTGGGTGCAAGTTAACAAA+TGG - chr1_1:54564064-54564083 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1_1:54564075-54564094 Msa0029260:intron 45.0%
TGCACCCACCTAAAACACTA+AGG - chr1_1:54564275-54564294 None:intergenic 45.0%
AACGACACCATATTCTGCCA+TGG - chr1_1:54564769-54564788 None:intergenic 45.0%
!! CAAAGCTTTTTCCCACAAGG+TGG - chr1_1:54564810-54564829 None:intergenic 45.0%
CACCTTGTGGGAAAAAGCTT+TGG + chr1_1:54564808-54564827 Msa0029260:intron 45.0%
CACAGGACTGAAAATGCTGT+TGG - chr1_1:54565061-54565080 None:intergenic 45.0%
! CAACAGCATTTTCAGTCCTG+TGG + chr1_1:54565059-54565078 Msa0029260:CDS 45.0%
! TACGTTTTGCAGACACCTGA+AGG - chr1_1:54565303-54565322 None:intergenic 45.0%
GTTCCTGGATTGAAGCAGTA+CGG + chr1_1:54565328-54565347 Msa0029260:CDS 45.0%
AAGAATGGTGCAGGCATGAA+AGG - chr1_1:54565385-54565404 None:intergenic 45.0%
! TATGGTGGAAAGAATGGTGC+AGG - chr1_1:54565394-54565413 None:intergenic 45.0%
! CCCACAAAAGTACACTTGCA+AGG - chr1_1:54565694-54565713 None:intergenic 45.0%
! CAAGTGTACTTTTGTGGGCA+GGG + chr1_1:54565696-54565715 Msa0029260:intron 45.0%
! TCAGTTAGTGTTGTTGCTGC+AGG - chr1_1:54565822-54565841 None:intergenic 45.0%
ATCTTGTGTGCCTGCTATCA+TGG + chr1_1:54565917-54565936 Msa0029260:intron 45.0%
CTACAATCTGCCATGATAGC+AGG - chr1_1:54565930-54565949 None:intergenic 45.0%
TGTAGTCCATGCATTTAGGG+TGG + chr1_1:54565945-54565964 Msa0029260:intron 45.0%
CCAAAACCACCCTAAATGCA+TGG - chr1_1:54565954-54565973 None:intergenic 45.0%
!! CCATGCATTTAGGGTGGTTT+TGG + chr1_1:54565951-54565970 Msa0029260:intron 45.0%
ACTGTGACTGGATCAACAGT+AGG + chr1_1:54566377-54566396 Msa0029260:intron 45.0%
GAACTAGTATGGCCTGTATC+GGG - chr1_1:54566597-54566616 None:intergenic 45.0%
CAGGTAAACCTCAATGACTC+AGG - chr1_1:54566817-54566836 None:intergenic 45.0%
GAGGTTTACCTGTGCAATAG+TGG + chr1_1:54566825-54566844 Msa0029260:three_prime_UTR 45.0%
GTTTACCTGTGCAATAGTGG+AGG + chr1_1:54566828-54566847 Msa0029260:three_prime_UTR 45.0%
! AATAGTGGAGGCAACTATGC+AGG + chr1_1:54566840-54566859 Msa0029260:three_prime_UTR 45.0%
! ATAGTGGAGGCAACTATGCA+GGG + chr1_1:54566841-54566860 Msa0029260:three_prime_UTR 45.0%
! GTTTGAAGCAGGGTTTACTG+TGG + chr1_1:54567019-54567038 Msa0029260:three_prime_UTR 45.0%
!! TATTAAAAGAATATTATAAA+AGG + chr1_1:54562155-54562174 Msa0029260:five_prime_UTR 5.0%
!! ATTAAAAGAATATTATAAAA+GGG + chr1_1:54562156-54562175 Msa0029260:five_prime_UTR 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG + chr1_1:54564155-54564174 Msa0029260:intron 5.0%
GAGAGAGTGAGAGAACGACA+AGG + chr1_1:54562231-54562250 Msa0029260:five_prime_UTR 50.0%
TAGAGTAGCGAAGATGGAGC+AGG + chr1_1:54562282-54562301 Msa0029260:exon 50.0%
TGCTGACATTCCCGATGAAG+AGG + chr1_1:54562324-54562343 Msa0029260:CDS 50.0%
TCCCGATGAAGAGGTTGACA+TGG + chr1_1:54562333-54562352 Msa0029260:CDS 50.0%
!! CCTAACCTTGGTGGTGTGAT+TGG - chr1_1:54562407-54562426 None:intergenic 50.0%
CCAATCACACCACCAAGGTT+AGG + chr1_1:54562404-54562423 Msa0029260:intron 50.0%
ACACCACCAAGGTTAGGGTT+AGG + chr1_1:54562410-54562429 Msa0029260:intron 50.0%
CACCACCAAGGTTAGGGTTA+GGG + chr1_1:54562411-54562430 Msa0029260:intron 50.0%
AACCCTAACCCTAACCTTGG+TGG - chr1_1:54562416-54562435 None:intergenic 50.0%
GAAGAGGCTGAAAGAGATCG+AGG + chr1_1:54562516-54562535 Msa0029260:CDS 50.0%
! AAAGAGATGGGCGCTGTTCA+AGG + chr1_1:54562580-54562599 Msa0029260:CDS 50.0%
TGAGATACAGAAGACCCAGC+AGG - chr1_1:54562745-54562764 None:intergenic 50.0%
CCATAGGTACCTACCATACC+AGG - chr1_1:54563444-54563463 None:intergenic 50.0%
CCTGGTATGGTAGGTACCTA+TGG + chr1_1:54563441-54563460 Msa0029260:intron 50.0%
TCGCTCCAAACCAAACCAAC+TGG - chr1_1:54563681-54563700 None:intergenic 50.0%
!! GTTTGGTTTGGAGCGAGTCT+GGG + chr1_1:54563685-54563704 Msa0029260:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG - chr1_1:54564323-54564342 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - chr1_1:54564324-54564343 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_1:54564323-54564342 None:intergenic 50.0%
ATGCAGTACAGGGCTGATGA+AGG - chr1_1:54564614-54564633 None:intergenic 50.0%
TTCATCAGCCCTGTACTGCA+TGG + chr1_1:54564613-54564632 Msa0029260:intron 50.0%
ACAAGGTGGAACCGACTACA+TGG - chr1_1:54564796-54564815 None:intergenic 50.0%
! ATGTAGTCGGTTCCACCTTG+TGG + chr1_1:54564795-54564814 Msa0029260:intron 50.0%
! TGTAGTCGGTTCCACCTTGT+GGG + chr1_1:54564796-54564815 Msa0029260:intron 50.0%
GACTCTGTTCACAGTACCAC+AGG - chr1_1:54565078-54565097 None:intergenic 50.0%
CTTCCGTACTGCTTCAATCC+AGG - chr1_1:54565334-54565353 None:intergenic 50.0%
GCTTACCCGTAAGCATATGG+TGG - chr1_1:54565409-54565428 None:intergenic 50.0%
! GCAAGTGTACTTTTGTGGGC+AGG + chr1_1:54565695-54565714 Msa0029260:intron 50.0%
TATCTCGGAACCCTTCTGCA+TGG - chr1_1:54566563-54566582 None:intergenic 50.0%
CGGGTGGGTCTTCTATATCT+CGG - chr1_1:54566578-54566597 None:intergenic 50.0%
ATAGAAGACCCACCCGATAC+AGG + chr1_1:54566582-54566601 Msa0029260:CDS 50.0%
TAGTATGGCCTGTATCGGGT+GGG - chr1_1:54566593-54566612 None:intergenic 50.0%
AGTTGCCTCCACTATTGCAC+AGG - chr1_1:54566836-54566855 None:intergenic 50.0%
CGCATCCAATCACACCACCA+AGG + chr1_1:54562399-54562418 Msa0029260:CDS 55.0%
!! GGTTTGGTTTGGAGCGAGTC+TGG + chr1_1:54563684-54563703 Msa0029260:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG - chr1_1:54564321-54564340 None:intergenic 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG - chr1_1:54564322-54564341 None:intergenic 55.0%
ATTGCATGGCCGACAGCTGA+AGG + chr1_1:54565199-54565218 Msa0029260:CDS 55.0%
CAGTACGGAAGAAGACCTGC+TGG + chr1_1:54565343-54565362 Msa0029260:CDS 55.0%
!! AGAAGACCTGCTGGTTTCCG+CGG + chr1_1:54565352-54565371 Msa0029260:CDS 55.0%
CTAGTATGGCCTGTATCGGG+TGG - chr1_1:54566594-54566613 None:intergenic 55.0%
TGTGTGTGTGTGTGTGGGGG+GGG - chr1_1:54564319-54564338 None:intergenic 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG - chr1_1:54564320-54564339 None:intergenic 60.0%
GCATGAAAGGCCTCCTACCG+CGG - chr1_1:54565372-54565391 None:intergenic 60.0%
TGTGTGTGTGTGTGGGGGGG+GGG - chr1_1:54564317-54564336 None:intergenic 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG - chr1_1:54564318-54564337 None:intergenic 65.0%
!! GACCTGCTGGTTTCCGCGGT+AGG + chr1_1:54565356-54565375 Msa0029260:CDS 65.0%
CTCCTACCGCGGAAACCAGC+AGG - chr1_1:54565361-54565380 None:intergenic 65.0%
!! CTGCTGGTTTCCGCGGTAGG+AGG + chr1_1:54565359-54565378 Msa0029260:CDS 65.0%
TGTGTGTGTGTGGGGGGGGG+GGG - chr1_1:54564315-54564334 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG - chr1_1:54564316-54564335 None:intergenic 70.0%
TGTGTGTGTGGGGGGGGGGG+GGG - chr1_1:54564313-54564332 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG - chr1_1:54564314-54564333 None:intergenic 75.0%
! TGTGTGTGGGGGGGGGGGGG+GGG - chr1_1:54564311-54564330 None:intergenic 80.0%
! GTGTGTGTGGGGGGGGGGGG+GGG - chr1_1:54564312-54564331 None:intergenic 80.0%
! TGTGTGGGGGGGGGGGGGGG+GGG - chr1_1:54564309-54564328 None:intergenic 85.0%
! GTGTGTGGGGGGGGGGGGGG+GGG - chr1_1:54564310-54564329 None:intergenic 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG - chr1_1:54564307-54564326 None:intergenic 90.0%
! GTGTGGGGGGGGGGGGGGGG+GGG - chr1_1:54564308-54564327 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54562087 54567059 54562087 ID=Msa0029260;Name=Msa0029260
chr1_1 mRNA 54562087 54567059 54562087 ID=Msa0029260-mRNA-1;Parent=Msa0029260;Name=Msa0029260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=208|1|1|1|0.8|0.66|6|446|217
chr1_1 exon 54562087 54562420 54562087 ID=Msa0029260-mRNA-1:exon:16228;Parent=Msa0029260-mRNA-1
chr1_1 exon 54562499 54562601 54562499 ID=Msa0029260-mRNA-1:exon:16229;Parent=Msa0029260-mRNA-1
chr1_1 exon 54562740 54562810 54562740 ID=Msa0029260-mRNA-1:exon:16230;Parent=Msa0029260-mRNA-1
chr1_1 exon 54565029 54565220 54565029 ID=Msa0029260-mRNA-1:exon:16231;Parent=Msa0029260-mRNA-1
chr1_1 exon 54565307 54565422 54565307 ID=Msa0029260-mRNA-1:exon:16232;Parent=Msa0029260-mRNA-1
chr1_1 exon 54566568 54567059 54566568 ID=Msa0029260-mRNA-1:exon:16233;Parent=Msa0029260-mRNA-1
chr1_1 five_prime_UTR 54562087 54562294 54562087 ID=Msa0029260-mRNA-1:five_prime_utr;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54562295 54562420 54562295 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54562499 54562601 54562499 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54562740 54562810 54562740 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54565029 54565220 54565029 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54565307 54565422 54565307 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 CDS 54566568 54566613 54566568 ID=Msa0029260-mRNA-1:cds;Parent=Msa0029260-mRNA-1
chr1_1 three_prime_UTR 54566614 54567059 54566614 ID=Msa0029260-mRNA-1:three_prime_utr;Parent=Msa0029260-mRNA-1
Gene Sequence

>Msa0029260

ATGGAGCAGGAAGAGCACGAAGTTTATGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGCTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGAAGGGTTCCGAGATATAGAAGACCCACCCGATACAGGCCATACTAG

Protein sequence

>Msa0029260

MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYGRVPRYRRPTRYRPY*