AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169300 MtrunA17_Chr1g0186001 100.000 217 0 0 1 217 1 217 8.18e-163 447
Msa0169300 MtrunA17_Chr8g0381851 65.919 223 62 5 1 217 1 215 1.36e-99 288
Msa0169300 MtrunA17_Chr4g0050311 68.947 190 52 3 35 217 9 198 3.05e-88 258
Msa0169300 MtrunA17_Chr1g0182761 63.687 179 58 1 46 217 105 283 8.98e-62 194
Msa0169300 MtrunA17_Chr1g0170731 57.609 92 32 1 101 192 3 87 2.05e-32 113
Msa0169300 MtrunA17_Chr3g0087861 36.872 179 100 7 43 211 454 629 1.05e-21 92.8
Msa0169300 MtrunA17_Chr8g0351991 36.170 141 77 6 79 211 623 758 2.99e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169300 AT5G51120.1 78.804 184 37 2 35 217 45 227 8.59e-103 296
Msa0169300 AT5G65260.1 69.683 221 61 4 1 217 1 219 3.20e-102 295
Msa0169300 AT5G10350.1 68.326 221 61 4 1 217 1 216 8.16e-102 294
Msa0169300 AT5G51120.2 64.706 221 40 2 35 217 45 265 1.19e-94 277
Msa0169300 AT5G10350.2 68.599 207 56 4 1 203 1 202 3.37e-93 271
Msa0169300 AT5G51120.3 82.014 139 24 1 80 217 4 142 1.18e-80 237
Msa0169300 AT5G10350.4 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0169300 AT5G10350.3 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0169300 AT5G10350.5 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0169300 AT5G10350.6 71.579 95 23 3 127 217 1 95 2.27e-39 131
Msa0169300 AT3G12640.4 33.636 110 62 2 89 187 467 576 1.41e-12 66.6
Msa0169300 AT3G12640.2 33.636 110 62 2 89 187 499 608 1.65e-12 66.2
Msa0169300 AT3G12640.3 33.636 110 62 2 89 187 499 608 1.65e-12 66.2
Msa0169300 AT3G12640.1 33.636 110 62 2 89 187 475 584 1.74e-12 66.2
Msa0169300 AT2G24350.2 32.857 140 80 6 35 165 254 388 4.07e-11 62.0
Msa0169300 AT2G24350.1 32.857 140 80 6 35 165 383 517 7.22e-11 61.6

Find 81 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAAAGAATATTATAAA+AGG 0.204372 1_4:+52516554 Msa0169300:five_prime_UTR
CAGGAAGAGCACGAAGTTTA+TGG 0.241947 1_4:+52516700 Msa0169300:CDS
GTTCTTATTCTCAACTTAAT+AGG 0.248384 1_4:+52521134 Msa0169300:exon
ACAATATTGACAGACAAATT+TGG 0.277446 1_4:+52519619 Msa0169300:CDS
TTGTAATAATGTTTATTTGA+TGG 0.287713 1_4:+52521209 Msa0169300:three_prime_UTR
TCAGAAATTTATATGAATTT+CGG 0.301138 1_4:+52521473 Msa0169300:three_prime_UTR
AAATGCTGTTGGACTTCTTC+AGG 0.339186 1_4:-52519568 None:intergenic
TTAAATGCCCTTAACTGTTA+AGG 0.350727 1_4:+52521266 Msa0169300:three_prime_UTR
GTTGAGAATAAGAACTAGTA+TGG 0.363623 1_4:-52521126 None:intergenic
ATGAATTTCGGTGATCGAAT+TGG 0.373691 1_4:+52521485 Msa0169300:three_prime_UTR
TCTTTCCACCATATGCTTAC+GGG 0.386901 1_4:+52519922 Msa0169300:CDS
ATGTACATCCTTAACAGTTA+AGG 0.397703 1_4:-52521274 None:intergenic
GCAAAACGTACAAATGTTCC+TGG 0.402106 1_4:+52519834 Msa0169300:CDS
TTCTTTCCACCATATGCTTA+CGG 0.403589 1_4:+52519921 Msa0169300:CDS
TCTACATAAGCAAATCCTTT+CGG 0.404767 1_4:-52519646 None:intergenic
CCTAACCTTGGTGGTGTGAT+TGG 0.419662 1_4:-52516803 None:intergenic
TGTACATCCTTAACAGTTAA+GGG 0.419777 1_4:-52521273 None:intergenic
TTCTGTATCTCAAGCTGAAA+AGG 0.437005 1_4:+52517152 Msa0169300:CDS
ATTAAAAGAATATTATAAAA+GGG 0.443442 1_4:+52516555 Msa0169300:five_prime_UTR
CTTCCGTACTGCTTCAATCC+AGG 0.447125 1_4:-52519852 None:intergenic
AAAGAGATGGGCGCTGTTCA+AGG 0.456481 1_4:+52516979 Msa0169300:CDS
AGACGATAGAGTAGCGAAGA+TGG 0.465591 1_4:+52516675 Msa0169300:exon
AATAGTGGAGGCAACTATGC+AGG 0.472943 1_4:+52521361 Msa0169300:three_prime_UTR
ACATCTTTATTATAAAGATA+AGG 0.480340 1_4:+52521162 Msa0169300:three_prime_UTR
CTGCTGGTTTCCGCGGTAGG+AGG 0.481689 1_4:+52519880 Msa0169300:CDS
ATAGAAGACCCACCCGATAC+AGG 0.483334 1_4:+52521103 Msa0169300:CDS
TCAAGCTGAAAAGGAGGAAG+TGG 0.486267 1_4:+52517161 Msa0169300:CDS
ATCCATGTCAACCTCTTCAT+CGG 0.493847 1_4:-52516734 None:intergenic
CTCCTACCGCGGAAACCAGC+AGG 0.495710 1_4:-52519879 None:intergenic
TAAACTATTCAGTTCAATGT+TGG 0.496084 1_4:+52521431 Msa0169300:three_prime_UTR
AGAACTAGTATGGCCTGTAT+CGG 0.496323 1_4:-52521116 None:intergenic
ATAGCTTACCCGTAAGCATA+TGG 0.502661 1_4:-52519930 None:intergenic
TCCATGTCAACCTCTTCATC+GGG 0.505267 1_4:-52516733 None:intergenic
GAACGACAAGGAGAAGAAGA+AGG 0.509991 1_4:+52516642 Msa0169300:five_prime_UTR
GAACTAGTATGGCCTGTATC+GGG 0.512109 1_4:-52521115 None:intergenic
GAGGTTTACCTGTGCAATAG+TGG 0.512371 1_4:+52521346 Msa0169300:three_prime_UTR
TTTAAAGTTAGTTTGAAGCA+GGG 0.512660 1_4:+52521530 Msa0169300:three_prime_UTR
AAGAATGGTGCAGGCATGAA+AGG 0.514431 1_4:-52519903 None:intergenic
TTAAATGAAACTGAATTGCA+TGG 0.518323 1_4:+52519706 Msa0169300:CDS
TAAGCATATGGTGGAAAGAA+TGG 0.526698 1_4:-52519918 None:intergenic
TCGAATTGGTTATGTGCTGT+TGG 0.529283 1_4:+52521499 Msa0169300:three_prime_UTR
CACAGGACTGAAAATGCTGT+TGG 0.529319 1_4:-52519579 None:intergenic
TAGAGTAGCGAAGATGGAGC+AGG 0.531579 1_4:+52516681 Msa0169300:exon
GACAAATTTGGTCAACCGAA+AGG 0.538920 1_4:+52519631 Msa0169300:CDS
TATGGTGGAAAGAATGGTGC+AGG 0.545682 1_4:-52519912 None:intergenic
CGGGTGGGTCTTCTATATCT+CGG 0.548551 1_4:-52521096 None:intergenic
GCATGAAAGGCCTCCTACCG+CGG 0.549694 1_4:-52519890 None:intergenic
AACCCTAACCCTAACCTTGG+TGG 0.550125 1_4:-52516812 None:intergenic
GACTCTGTTCACAGTACCAC+AGG 0.550448 1_4:-52519596 None:intergenic
CAGGTAAACCTCAATGACTC+AGG 0.554663 1_4:-52521335 None:intergenic
ATTGCATGGCCGACAGCTGA+AGG 0.563098 1_4:+52519720 Msa0169300:CDS
CAGTACGGAAGAAGACCTGC+TGG 0.568352 1_4:+52519864 Msa0169300:CDS
GACCTGCTGGTTTCCGCGGT+AGG 0.570934 1_4:+52519877 Msa0169300:CDS
AGCTAAGGTTGAGAAAGAGA+TGG 0.576917 1_4:+52516966 Msa0169300:CDS
TCAAATAAACATTATTACAA+TGG 0.582290 1_4:-52521206 None:intergenic
GATGCTCGATCGATCTATGT+TGG 0.582767 1_4:+52517183 Msa0169300:CDS
TCAATGACTCAGGGAAAATG+AGG 0.585147 1_4:-52521325 None:intergenic
AGTTGCCTCCACTATTGCAC+AGG 0.586210 1_4:-52521354 None:intergenic
ATGTACTATATCGACAAAGT+AGG 0.590533 1_4:+52521295 Msa0169300:three_prime_UTR
CTTATTCTCAACTTAATAGG+CGG 0.591121 1_4:+52521137 Msa0169300:three_prime_UTR
GCTAAGGTTGAGAAAGAGAT+GGG 0.591216 1_4:+52516967 Msa0169300:CDS
TTGATGTTCAGCATCTATGT+CGG 0.596596 1_4:-52516758 None:intergenic
CTAGTATGGCCTGTATCGGG+TGG 0.600648 1_4:-52521112 None:intergenic
TCCCGATGAAGAGGTTGACA+TGG 0.607730 1_4:+52516732 Msa0169300:CDS
ATAGTGGAGGCAACTATGCA+GGG 0.608735 1_4:+52521362 Msa0169300:three_prime_UTR
GTTCCTGGATTGAAGCAGTA+CGG 0.610328 1_4:+52519849 Msa0169300:CDS
TCTTCGCGAAATGCAAGCTA+AGG 0.612879 1_4:+52516951 Msa0169300:CDS
TGTATCTCAAGCTGAAAAGG+AGG 0.614985 1_4:+52517155 Msa0169300:CDS
TGAGATACAGAAGACCCAGC+AGG 0.620132 1_4:-52517141 None:intergenic
AATTGGAGGATATGAAGAAG+AGG 0.623414 1_4:+52516899 Msa0169300:CDS
GTTTGAAGCAGGGTTTACTG+TGG 0.625360 1_4:+52521540 Msa0169300:three_prime_UTR
AGAAGACCTGCTGGTTTCCG+CGG 0.627211 1_4:+52519873 Msa0169300:CDS
TAGTATGGCCTGTATCGGGT+GGG 0.627864 1_4:-52521111 None:intergenic
GCTTACCCGTAAGCATATGG+TGG 0.644904 1_4:-52519927 None:intergenic
GAAGAGGCTGAAAGAGATCG+AGG 0.648698 1_4:+52516915 Msa0169300:CDS
TGCTGACATTCCCGATGAAG+AGG 0.653227 1_4:+52516723 Msa0169300:CDS
AGGTAAACCTCAATGACTCA+GGG 0.660836 1_4:-52521334 None:intergenic
GTTTACCTGTGCAATAGTGG+AGG 0.663378 1_4:+52521349 Msa0169300:three_prime_UTR
CGCATCCAATCACACCACCA+AGG 0.672127 1_4:+52516798 Msa0169300:CDS
GAGAGAGTGAGAGAACGACA+AGG 0.682441 1_4:+52516630 Msa0169300:five_prime_UTR
ATAGATGCTGAACATCAAGA+AGG 0.684507 1_4:+52516763 Msa0169300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATCATAAATAAAATCAA+AGG - chr1_4:52517227-52517246 None:intergenic 10.0%
!!! AATGTTGATTTAATTTTTTT+TGG + chr1_4:52517500-52517519 Msa0169300:intron 10.0%
!!! ATGTTGATTTAATTTTTTTT+GGG + chr1_4:52517501-52517520 Msa0169300:intron 10.0%
!!! AAGATAGTTTTTTTAAAAAA+TGG - chr1_4:52518019-52518038 None:intergenic 10.0%
!!! TCTTAAACTTTATTTTAATT+AGG + chr1_4:52518695-52518714 Msa0169300:intron 10.0%
!! ATTATAAACATGTAAATATT+TGG - chr1_4:52519044-52519063 None:intergenic 10.0%
!!! ATGATTTTTATTTTATGATT+TGG + chr1_4:52520860-52520879 Msa0169300:intron 10.0%
!!! AAAATGTTTTTATTTATTCA+CGG + chr1_4:52521020-52521039 Msa0169300:intron 10.0%
!! AATTTAATGTTTGGATTATT+GGG + chr1_4:52517450-52517469 Msa0169300:intron 15.0%
!!! TGTTGATTTAATTTTTTTTG+GGG + chr1_4:52517502-52517521 Msa0169300:intron 15.0%
!!! AAATGTTCTAAATTCTAATA+GGG - chr1_4:52517764-52517783 None:intergenic 15.0%
!!! TAGTTTTTTTAAAAAATGGA+AGG - chr1_4:52518015-52518034 None:intergenic 15.0%
!! TTAAAAAAACTATCTTGAAA+AGG + chr1_4:52518023-52518042 Msa0169300:intron 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr1_4:52518605-52518624 Msa0169300:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr1_4:52518606-52518625 Msa0169300:intron 15.0%
!! AATATTTGTTTATAATAGCA+TGG + chr1_4:52518741-52518760 Msa0169300:intron 15.0%
!! ATATTTGTTTATAATAGCAT+GGG + chr1_4:52518742-52518761 Msa0169300:intron 15.0%
!! TTTAAAAAATTTGGATGATA+TGG - chr1_4:52518998-52519017 None:intergenic 15.0%
!!! TAGATAGATCTAAAATTATA+TGG + chr1_4:52519239-52519258 Msa0169300:intron 15.0%
!! ATAATTCAATTAAAACCAAA+TGG - chr1_4:52519794-52519813 None:intergenic 15.0%
!!! ATTTGGTTTTAATTGAATTA+TGG + chr1_4:52519793-52519812 Msa0169300:intron 15.0%
!!! ATTTTTATTTTATGATTTGG+TGG + chr1_4:52520863-52520882 Msa0169300:intron 15.0%
!! AATAATTAAACATAAAGCAT+GGG - chr1_4:52521046-52521065 None:intergenic 15.0%
!! TAATAATTAAACATAAAGCA+TGG - chr1_4:52521047-52521066 None:intergenic 15.0%
!! ACATCTTTATTATAAAGATA+AGG + chr1_4:52521162-52521181 Msa0169300:three_prime_UTR 15.0%
!! TCAAATAAACATTATTACAA+TGG - chr1_4:52521209-52521228 None:intergenic 15.0%
!! TTGTAATAATGTTTATTTGA+TGG + chr1_4:52521209-52521228 Msa0169300:three_prime_UTR 15.0%
!! TCAGAAATTTATATGAATTT+CGG + chr1_4:52521473-52521492 Msa0169300:three_prime_UTR 15.0%
!!! TCTTAATTTTATATGCAACA+AGG - chr1_4:52516524-52516543 None:intergenic 20.0%
!! TAGGTTAAGAATTTAATGTT+TGG + chr1_4:52517441-52517460 Msa0169300:intron 20.0%
!! GAATTTAATGTTTGGATTAT+TGG + chr1_4:52517449-52517468 Msa0169300:intron 20.0%
!!! GTTGATTTAATTTTTTTTGG+GGG + chr1_4:52517503-52517522 Msa0169300:intron 20.0%
!!! AATGTCGATTTTTGTTTTTT+TGG + chr1_4:52517640-52517659 Msa0169300:intron 20.0%
!!! ATGTCGATTTTTGTTTTTTT+GGG + chr1_4:52517641-52517660 Msa0169300:intron 20.0%
!!! AATGTTCTAAATTCTAATAG+GGG - chr1_4:52517763-52517782 None:intergenic 20.0%
!!! CAAATGTTCTAAATTCTAAT+AGG - chr1_4:52517765-52517784 None:intergenic 20.0%
!!! CTATTAGAATTTAGAACATT+TGG + chr1_4:52517763-52517782 Msa0169300:intron 20.0%
!! AAATTAATGAAAAGTGAAAC+AGG - chr1_4:52517919-52517938 None:intergenic 20.0%
!!! AATTTTATTTTTAGAGTGTG+TGG + chr1_4:52517934-52517953 Msa0169300:intron 20.0%
!! CTATTTAACAACACTTAATT+CGG - chr1_4:52518265-52518284 None:intergenic 20.0%
!! TATGAAAGATTATGAAATAG+CGG + chr1_4:52518361-52518380 Msa0169300:intron 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG - chr1_4:52518542-52518561 None:intergenic 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - chr1_4:52518543-52518562 None:intergenic 20.0%
!!! TTTTAAGCACTTAAATTTCA+TGG + chr1_4:52519156-52519175 Msa0169300:intron 20.0%
!! TTTAAGCACTTAAATTTCAT+GGG + chr1_4:52519157-52519176 Msa0169300:intron 20.0%
!!! TAATTTTAGATCTATCTAGA+TGG - chr1_4:52519237-52519256 None:intergenic 20.0%
!!! TTTTTGAGATTTAAATGACA+TGG - chr1_4:52519483-52519502 None:intergenic 20.0%
!! TTAAATCTCAAAAACTTCAA+CGG + chr1_4:52519489-52519508 Msa0169300:intron 20.0%
!!! ATGTTTACTTTTTGTGTAAA+TGG + chr1_4:52520055-52520074 Msa0169300:intron 20.0%
!! CGATATTTAAATAAAACTAG+TGG + chr1_4:52520096-52520115 Msa0169300:intron 20.0%
!! ATTTAAATAAAACTAGTGGA+TGG + chr1_4:52520100-52520119 Msa0169300:intron 20.0%
!! ATAGTAATACATCTAATGAT+AGG + chr1_4:52520136-52520155 Msa0169300:intron 20.0%
!! AAAACTGTATATATACTTGT+TGG - chr1_4:52520310-52520329 None:intergenic 20.0%
!!! AACAAGTATATATACAGTTT+TGG + chr1_4:52520309-52520328 Msa0169300:intron 20.0%
!! TAGCTTATTCTGATATAATA+AGG + chr1_4:52520573-52520592 Msa0169300:intron 20.0%
!! ATATTTAGAAACAACTTGTA+CGG + chr1_4:52520667-52520686 Msa0169300:intron 20.0%
!!! CAATAGTTTACTAAGTTTTT+CGG + chr1_4:52521393-52521412 Msa0169300:three_prime_UTR 20.0%
! ATTCAGATCTGTTTATCATT+TGG + chr1_4:52517073-52517092 Msa0169300:intron 25.0%
!! TTATCATTTGGCTCAATTAT+TGG + chr1_4:52517085-52517104 Msa0169300:intron 25.0%
!!! TTTTTTATTTTAGATCCTGC+TGG + chr1_4:52517126-52517145 Msa0169300:intron 25.0%
!!! TTTTTATTTTAGATCCTGCT+GGG + chr1_4:52517127-52517146 Msa0169300:intron 25.0%
!! TTGCTTACAGTTTGAATTTT+AGG + chr1_4:52517422-52517441 Msa0169300:intron 25.0%
!! ATGTTCTAAATTCTAATAGG+GGG - chr1_4:52517762-52517781 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr1_4:52518519-52518538 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + chr1_4:52518629-52518648 Msa0169300:intron 25.0%
!!! ACAAATGTTTTAGTAGTAGT+AGG - chr1_4:52518674-52518693 None:intergenic 25.0%
!!! TGTTTTGGTTAATAACTAGT+AGG + chr1_4:52518765-52518784 Msa0169300:intron 25.0%
! CACATATATATAACCCAAAT+TGG + chr1_4:52518863-52518882 Msa0169300:intron 25.0%
!!! GCTCTTATTGTTAGTTTTAA+TGG - chr1_4:52518911-52518930 None:intergenic 25.0%
!! ATTAAGTCAGATATGTTTTC+AGG - chr1_4:52518968-52518987 None:intergenic 25.0%
!!! CCTGGGTATTTTAAAAAATT+TGG - chr1_4:52519007-52519026 None:intergenic 25.0%
!!! CCAAATTTTTTAAAATACCC+AGG + chr1_4:52519004-52519023 Msa0169300:intron 25.0%
! CCATAACATTTACAAATGAT+CGG - chr1_4:52519076-52519095 None:intergenic 25.0%
! GAGTATACTAAAATAGTTAG+AGG + chr1_4:52519179-52519198 Msa0169300:intron 25.0%
! ACTAAAATAGTTAGAGGAAT+AGG + chr1_4:52519185-52519204 Msa0169300:intron 25.0%
! CTAAAATAGTTAGAGGAATA+GGG + chr1_4:52519186-52519205 Msa0169300:intron 25.0%
! AAAATGCATTAGATATGTGA+GGG - chr1_4:52519437-52519456 None:intergenic 25.0%
! AAAAATGCATTAGATATGTG+AGG - chr1_4:52519438-52519457 None:intergenic 25.0%
! ACAATATTGACAGACAAATT+TGG + chr1_4:52519619-52519638 Msa0169300:CDS 25.0%
! TTAAATGAAACTGAATTGCA+TGG + chr1_4:52519706-52519725 Msa0169300:CDS 25.0%
! ATTAAAACCAAATGGAAACA+TGG - chr1_4:52519786-52519805 None:intergenic 25.0%
! TGTATAACCAAAAACTACAT+AGG + chr1_4:52520271-52520290 Msa0169300:intron 25.0%
! GTATAACCAAAAACTACATA+GGG + chr1_4:52520272-52520291 Msa0169300:intron 25.0%
! TATTACCACATTTAATGATG+TGG - chr1_4:52520812-52520831 None:intergenic 25.0%
! ATAGAGAAAGAATGACAATT+AGG - chr1_4:52520935-52520954 None:intergenic 25.0%
!! AAATAATTTTTCCATGCAGA+AGG + chr1_4:52521070-52521089 Msa0169300:intron 25.0%
!! AATAATTTTTCCATGCAGAA+GGG + chr1_4:52521071-52521090 Msa0169300:intron 25.0%
! GTTCTTATTCTCAACTTAAT+AGG + chr1_4:52521134-52521153 Msa0169300:exon 25.0%
! TAAACTATTCAGTTCAATGT+TGG + chr1_4:52521431-52521450 Msa0169300:three_prime_UTR 25.0%
!!! TTTTAAAGTTAGTTTGAAGC+AGG + chr1_4:52521529-52521548 Msa0169300:three_prime_UTR 25.0%
!! TTTAAAGTTAGTTTGAAGCA+GGG + chr1_4:52521530-52521549 Msa0169300:three_prime_UTR 25.0%
TACCATAGACAAAAATCTCT+CGG + chr1_4:52516598-52516617 Msa0169300:five_prime_UTR 30.0%
!! TTAACATGAATCGATTTTGC+AGG + chr1_4:52516876-52516895 Msa0169300:intron 30.0%
! ACTCAATTCTGCAATCTTTT+TGG + chr1_4:52517370-52517389 Msa0169300:intron 30.0%
TAATGTTTGGATTATTGGGA+TGG + chr1_4:52517454-52517473 Msa0169300:intron 30.0%
! GACTTTTCAGAAACATGTTA+AGG - chr1_4:52517565-52517584 None:intergenic 30.0%
TGAAAACTAAAACTGCTTGT+CGG - chr1_4:52517613-52517632 None:intergenic 30.0%
! TGTTCTAAATTCTAATAGGG+GGG - chr1_4:52517761-52517780 None:intergenic 30.0%
AAAACTAAAACTGCCTATTG+GGG - chr1_4:52517789-52517808 None:intergenic 30.0%
CAAAACTAAAACTGCCTATT+GGG - chr1_4:52517790-52517809 None:intergenic 30.0%
TCAAAACTAAAACTGCCTAT+TGG - chr1_4:52517791-52517810 None:intergenic 30.0%
! AGCTTTATATAACTAGCCAT+AGG - chr1_4:52517859-52517878 None:intergenic 30.0%
TAAGCACCTATAAAGTTGTT+TGG + chr1_4:52517878-52517897 Msa0169300:intron 30.0%
CCAATTCCAAACAACTTTAT+AGG - chr1_4:52517887-52517906 None:intergenic 30.0%
! CCTATAAAGTTGTTTGGAAT+TGG + chr1_4:52517884-52517903 Msa0169300:intron 30.0%
!!! TATTTTTAGAGTGTGTGGAA+TGG + chr1_4:52517939-52517958 Msa0169300:intron 30.0%
GGTAATTTAGAAATTGAGCA+TGG + chr1_4:52518105-52518124 Msa0169300:intron 30.0%
TCTGATATCATGTCCTTTAA+AGG + chr1_4:52518164-52518183 Msa0169300:intron 30.0%
GGAAACTAAAACACCTTTAA+AGG - chr1_4:52518180-52518199 None:intergenic 30.0%
AGGAAAACAAACTAATGCTA+GGG - chr1_4:52518201-52518220 None:intergenic 30.0%
GTTGTTAAATAGCAGTATAG+CGG + chr1_4:52518273-52518292 Msa0169300:intron 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr1_4:52518614-52518633 Msa0169300:intron 30.0%
! TTATAATAGCATGGGTGTTT+TGG + chr1_4:52518750-52518769 Msa0169300:intron 30.0%
ATATAACCCAAATTGGACTT+CGG + chr1_4:52518870-52518889 Msa0169300:intron 30.0%
AAATTTGGATGATATGGATC+TGG - chr1_4:52518992-52519011 None:intergenic 30.0%
CCGATCATTTGTAAATGTTA+TGG + chr1_4:52519073-52519092 Msa0169300:intron 30.0%
TATGGTAAACTTCTCATAAC+TGG + chr1_4:52519091-52519110 Msa0169300:intron 30.0%
TTAGATCTATCTAGATGGTT+TGG - chr1_4:52519232-52519251 None:intergenic 30.0%
ATATGGCCTATCTGTATTTA+TGG + chr1_4:52519256-52519275 Msa0169300:intron 30.0%
! ACTGGTTTCTAATATGAATC+AGG + chr1_4:52519528-52519547 Msa0169300:intron 30.0%
TCTACATAAGCAAATCCTTT+CGG - chr1_4:52519649-52519668 None:intergenic 30.0%
ATAAAAATACCTTCAGCTGT+CGG - chr1_4:52519732-52519751 None:intergenic 30.0%
! TGAATTATGGTTTTTCCTTC+AGG + chr1_4:52519806-52519825 Msa0169300:intron 30.0%
CAAAAGCAACAATGAATTCT+GGG - chr1_4:52519986-52520005 None:intergenic 30.0%
ACAAAAGCAACAATGAATTC+TGG - chr1_4:52519987-52520006 None:intergenic 30.0%
! GACATCCAATGTGTAAATTT+TGG + chr1_4:52520015-52520034 Msa0169300:intron 30.0%
AGATGCCAAAATTTACACAT+TGG - chr1_4:52520023-52520042 None:intergenic 30.0%
GGTATACACTACAGTTAAAA+TGG + chr1_4:52520365-52520384 Msa0169300:intron 30.0%
TACACTACAGTTAAAATGGA+TGG + chr1_4:52520369-52520388 Msa0169300:intron 30.0%
AGAGAATGAACGAACAATAA+AGG - chr1_4:52520755-52520774 None:intergenic 30.0%
TGTTAAAAATTGACTGTGAC+TGG + chr1_4:52520886-52520905 Msa0169300:intron 30.0%
GTTGAGAATAAGAACTAGTA+TGG - chr1_4:52521129-52521148 None:intergenic 30.0%
CTTATTCTCAACTTAATAGG+CGG + chr1_4:52521137-52521156 Msa0169300:three_prime_UTR 30.0%
TTAAATGCCCTTAACTGTTA+AGG + chr1_4:52521266-52521285 Msa0169300:three_prime_UTR 30.0%
TGTACATCCTTAACAGTTAA+GGG - chr1_4:52521276-52521295 None:intergenic 30.0%
ATGTACATCCTTAACAGTTA+AGG - chr1_4:52521277-52521296 None:intergenic 30.0%
ATGTACTATATCGACAAAGT+AGG + chr1_4:52521295-52521314 Msa0169300:three_prime_UTR 30.0%
TTGATGTTCAGCATCTATGT+CGG - chr1_4:52516761-52516780 None:intergenic 35.0%
ATAGATGCTGAACATCAAGA+AGG + chr1_4:52516763-52516782 Msa0169300:CDS 35.0%
!! TGAATCGATTTTGCAGGAAT+TGG + chr1_4:52516882-52516901 Msa0169300:intron 35.0%
AATTGGAGGATATGAAGAAG+AGG + chr1_4:52516899-52516918 Msa0169300:CDS 35.0%
TTCTGTATCTCAAGCTGAAA+AGG + chr1_4:52517152-52517171 Msa0169300:CDS 35.0%
TAGAACGTTTAGGTGTATGA+TGG + chr1_4:52517322-52517341 Msa0169300:intron 35.0%
! CAATTCTGCAATCTTTTTGG+CGG + chr1_4:52517373-52517392 Msa0169300:intron 35.0%
CAAAGATGCACCTAAAAACT+CGG - chr1_4:52517402-52517421 None:intergenic 35.0%
TTTGGATTATTGGGATGGAT+GGG + chr1_4:52517459-52517478 Msa0169300:intron 35.0%
AAAACTAAAACTGCTTGTCG+GGG - chr1_4:52517611-52517630 None:intergenic 35.0%
GAAAACTAAAACTGCTTGTC+GGG - chr1_4:52517612-52517631 None:intergenic 35.0%
!! TTTCAACTACTTGGTGCATA+TGG - chr1_4:52517705-52517724 None:intergenic 35.0%
!! GATCGTTGTTTTCAACTACT+TGG - chr1_4:52517714-52517733 None:intergenic 35.0%
ATTGATTGAACCAAAAACCC+TGG + chr1_4:52517822-52517841 Msa0169300:intron 35.0%
! AAAAGTGAAACAGGCTGTTT+TGG - chr1_4:52517910-52517929 None:intergenic 35.0%
!!! ATTGAGCATGGTTTTGTCAA+AGG + chr1_4:52518117-52518136 Msa0169300:intron 35.0%
GAGGAAAACAAACTAATGCT+AGG - chr1_4:52518202-52518221 None:intergenic 35.0%
!!! GCATTAGTTTGTTTTCCTCT+TGG + chr1_4:52518203-52518222 Msa0169300:intron 35.0%
!!! TAGTTTGTTTTCCTCTTGGA+AGG + chr1_4:52518207-52518226 Msa0169300:intron 35.0%
!! AGTTTGTTTTCCTCTTGGAA+GGG + chr1_4:52518208-52518227 Msa0169300:intron 35.0%
TTACAGATCGCAGAATATAG+CGG - chr1_4:52518427-52518446 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1_4:52518484-52518503 None:intergenic 35.0%
! AACTTGCACCTTAGTGTTTT+AGG + chr1_4:52518799-52518818 Msa0169300:intron 35.0%
TTGAAACCGAAGTCCAATTT+GGG - chr1_4:52518879-52518898 None:intergenic 35.0%
ATTGAAACCGAAGTCCAATT+TGG - chr1_4:52518880-52518899 None:intergenic 35.0%
ATTGGACTTCGGTTTCAATT+TGG + chr1_4:52518881-52518900 Msa0169300:intron 35.0%
ATAAGAGCTACTAGACCATT+TGG + chr1_4:52518923-52518942 Msa0169300:intron 35.0%
CATTCAGGTAATCAACCAAA+TGG - chr1_4:52518941-52518960 None:intergenic 35.0%
!! ATGTTTTCAGGATCACATTC+AGG - chr1_4:52518956-52518975 None:intergenic 35.0%
TGGTTTCTTACAAGTTACCT+GGG - chr1_4:52519024-52519043 None:intergenic 35.0%
TTGGTTTCTTACAAGTTACC+TGG - chr1_4:52519025-52519044 None:intergenic 35.0%
! GTTTGGCCTAAAGTTTTCTT+TGG - chr1_4:52519215-52519234 None:intergenic 35.0%
CATGGACCATAAATACAGAT+AGG - chr1_4:52519265-52519284 None:intergenic 35.0%
CTATCTGTATTTATGGTCCA+TGG + chr1_4:52519263-52519282 Msa0169300:intron 35.0%
! TGTGTGTTCAAGATTGATTC+TGG + chr1_4:52519404-52519423 Msa0169300:intron 35.0%
! GGAGTGTTAATTCATCAAAC+TGG + chr1_4:52519510-52519529 Msa0169300:intron 35.0%
AATCACTCCATGTTTCCATT+TGG + chr1_4:52519776-52519795 Msa0169300:intron 35.0%
! TAAGCATATGGTGGAAAGAA+TGG - chr1_4:52519921-52519940 None:intergenic 35.0%
TTCTTTCCACCATATGCTTA+CGG + chr1_4:52519921-52519940 Msa0169300:CDS 35.0%
! AGGAAAGTATACAGAACATG+AGG - chr1_4:52520195-52520214 None:intergenic 35.0%
! ATGCATCCCTATGTAGTTTT+TGG - chr1_4:52520281-52520300 None:intergenic 35.0%
CTACAGTTAAAATGGATGGA+TGG + chr1_4:52520373-52520392 Msa0169300:intron 35.0%
AGATTGTAGTCCATGCATTT+AGG + chr1_4:52520462-52520481 Msa0169300:intron 35.0%
GATTGTAGTCCATGCATTTA+GGG + chr1_4:52520463-52520482 Msa0169300:intron 35.0%
AAGTTACAAACACTCATGAC+AGG + chr1_4:52520608-52520627 Msa0169300:intron 35.0%
TTAGAAACAACTTGTACGGA+CGG + chr1_4:52520671-52520690 Msa0169300:intron 35.0%
! ACGAACAATAAAGGTATGCT+TGG - chr1_4:52520746-52520765 None:intergenic 35.0%
CATTGCCACATCATTAAATG+TGG + chr1_4:52520804-52520823 Msa0169300:intron 35.0%
GAGAAAGAATGACAATTAGG+AGG - chr1_4:52520932-52520951 None:intergenic 35.0%
! CACGAAGCTTCTTTTTACAT+AGG + chr1_4:52521240-52521259 Msa0169300:three_prime_UTR 35.0%
ATGAATTTCGGTGATCGAAT+TGG + chr1_4:52521485-52521504 Msa0169300:three_prime_UTR 35.0%
! CACCGAGAGATTTTTGTCTA+TGG - chr1_4:52516603-52516622 None:intergenic 40.0%
TAGACAAAAATCTCTCGGTG+CGG + chr1_4:52516603-52516622 Msa0169300:five_prime_UTR 40.0%
ATCCATGTCAACCTCTTCAT+CGG - chr1_4:52516737-52516756 None:intergenic 40.0%
AGGGTTAGGGTTAACGAATT+AGG + chr1_4:52516823-52516842 Msa0169300:intron 40.0%
GGGTTAGGGTTAACGAATTA+GGG + chr1_4:52516824-52516843 Msa0169300:intron 40.0%
AGGGTTAACGAATTAGGGTT+TGG + chr1_4:52516829-52516848 Msa0169300:intron 40.0%
GGGTTAACGAATTAGGGTTT+GGG + chr1_4:52516830-52516849 Msa0169300:intron 40.0%
!! ATCGATTTTGCAGGAATTGG+AGG + chr1_4:52516885-52516904 Msa0169300:intron 40.0%
AGCTAAGGTTGAGAAAGAGA+TGG + chr1_4:52516966-52516985 Msa0169300:CDS 40.0%
GCTAAGGTTGAGAAAGAGAT+GGG + chr1_4:52516967-52516986 Msa0169300:CDS 40.0%
TGTATCTCAAGCTGAAAAGG+AGG + chr1_4:52517155-52517174 Msa0169300:CDS 40.0%
AGTGCTCAAGTAGAACGTTT+AGG + chr1_4:52517312-52517331 Msa0169300:intron 40.0%
GTTTGGATTATTGGGATGGA+TGG + chr1_4:52517458-52517477 Msa0169300:intron 40.0%
!! GGGCTGAATGTTCTAGAAAA+GGG - chr1_4:52517591-52517610 None:intergenic 40.0%
CTGCACGTGATTGACTAATA+CGG + chr1_4:52517678-52517697 Msa0169300:intron 40.0%
TGCACGTGATTGACTAATAC+GGG + chr1_4:52517679-52517698 Msa0169300:intron 40.0%
TTAGAACATTTGGCCCCAAT+AGG + chr1_4:52517773-52517792 Msa0169300:intron 40.0%
TTGAACCAAAAACCCTGGTA+TGG + chr1_4:52517827-52517846 Msa0169300:intron 40.0%
TTGGAAGGGACATGTTATCA+GGG + chr1_4:52518222-52518241 Msa0169300:intron 40.0%
GCTATATCACTATCGCATAG+CGG + chr1_4:52518297-52518316 Msa0169300:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1_4:52518480-52518499 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1_4:52518481-52518500 None:intergenic 40.0%
!! TTGCACCTTAGTGTTTTAGG+TGG + chr1_4:52518802-52518821 Msa0169300:intron 40.0%
!! TGCACCTTAGTGTTTTAGGT+GGG + chr1_4:52518803-52518822 Msa0169300:intron 40.0%
AAGCATTACCATGCAGTACA+GGG - chr1_4:52519138-52519157 None:intergenic 40.0%
! AAAGCATTACCATGCAGTAC+AGG - chr1_4:52519139-52519158 None:intergenic 40.0%
GGGAGACCAAAGAAAACTTT+AGG + chr1_4:52519206-52519225 Msa0169300:intron 40.0%
TTATGGTCCATGGCAGAATA+TGG + chr1_4:52519273-52519292 Msa0169300:intron 40.0%
! TGTCGTTTGATCCATGTAGT+CGG + chr1_4:52519296-52519315 Msa0169300:intron 40.0%
!! TACCAAAGCTTTTTCCCACA+AGG - chr1_4:52519327-52519346 None:intergenic 40.0%
AAATGCTGTTGGACTTCTTC+AGG - chr1_4:52519571-52519590 None:intergenic 40.0%
GACAAATTTGGTCAACCGAA+AGG + chr1_4:52519631-52519650 Msa0169300:CDS 40.0%
GCAAAACGTACAAATGTTCC+TGG + chr1_4:52519834-52519853 Msa0169300:CDS 40.0%
TCTTTCCACCATATGCTTAC+GGG + chr1_4:52519922-52519941 Msa0169300:CDS 40.0%
ATAGCTTACCCGTAAGCATA+TGG - chr1_4:52519933-52519952 None:intergenic 40.0%
CATTAACAAGCACGCTTATG+TGG - chr1_4:52520165-52520184 None:intergenic 40.0%
! TCCTTGCAAGTGTACTTTTG+TGG + chr1_4:52520211-52520230 Msa0169300:intron 40.0%
! CCTTGCAAGTGTACTTTTGT+GGG + chr1_4:52520212-52520231 Msa0169300:intron 40.0%
CAGCAACAACACTAACTGAA+TGG + chr1_4:52520344-52520363 Msa0169300:intron 40.0%
! ACTGGATCAACAGTAGGTTT+TGG + chr1_4:52520904-52520923 Msa0169300:intron 40.0%
AGAACTAGTATGGCCTGTAT+CGG - chr1_4:52521119-52521138 None:intergenic 40.0%
TCAATGACTCAGGGAAAATG+AGG - chr1_4:52521328-52521347 None:intergenic 40.0%
! TCATTTTCCCTGAGTCATTG+AGG + chr1_4:52521327-52521346 Msa0169300:three_prime_UTR 40.0%
AGGTAAACCTCAATGACTCA+GGG - chr1_4:52521337-52521356 None:intergenic 40.0%
TCGAATTGGTTATGTGCTGT+TGG + chr1_4:52521499-52521518 Msa0169300:three_prime_UTR 40.0%
GAACGACAAGGAGAAGAAGA+AGG + chr1_4:52516642-52516661 Msa0169300:five_prime_UTR 45.0%
AGACGATAGAGTAGCGAAGA+TGG + chr1_4:52516675-52516694 Msa0169300:exon 45.0%
! CAGGAAGAGCACGAAGTTTA+TGG + chr1_4:52516700-52516719 Msa0169300:CDS 45.0%
TCCATGTCAACCTCTTCATC+GGG - chr1_4:52516736-52516755 None:intergenic 45.0%
CAATCACACCACCAAGGTTA+GGG + chr1_4:52516804-52516823 Msa0169300:intron 45.0%
GTTAACCCTAACCCTAACCT+TGG - chr1_4:52516818-52516837 None:intergenic 45.0%
TCTTCGCGAAATGCAAGCTA+AGG + chr1_4:52516951-52516970 Msa0169300:CDS 45.0%
TCAAGCTGAAAAGGAGGAAG+TGG + chr1_4:52517161-52517180 Msa0169300:CDS 45.0%
GATGCTCGATCGATCTATGT+TGG + chr1_4:52517183-52517202 Msa0169300:CDS 45.0%
! TTGGCGGTTTCCGAGTTTTT+AGG + chr1_4:52517389-52517408 Msa0169300:intron 45.0%
!! GGGGCTGAATGTTCTAGAAA+AGG - chr1_4:52517592-52517611 None:intergenic 45.0%
ACCAAAAACCCTGGTATGGT+AGG + chr1_4:52517831-52517850 Msa0169300:intron 45.0%
! ACCTACCATACCAGGGTTTT+TGG - chr1_4:52517835-52517854 None:intergenic 45.0%
CATAGGTACCTACCATACCA+GGG - chr1_4:52517842-52517861 None:intergenic 45.0%
AGTGTGTGGAATGGTTGAGA+TGG + chr1_4:52517948-52517967 Msa0169300:intron 45.0%
GTGTGTGGAATGGTTGAGAT+GGG + chr1_4:52517949-52517968 Msa0169300:intron 45.0%
GAATGGTTGAGATGGGAAAG+AGG + chr1_4:52517956-52517975 Msa0169300:intron 45.0%
GAGATGGGAAAGAGGTTGTA+TGG + chr1_4:52517964-52517983 Msa0169300:intron 45.0%
GTGTTGTACATGTAGCCAGT+TGG + chr1_4:52518062-52518081 Msa0169300:intron 45.0%
GTACATGTAGCCAGTTGGTT+TGG + chr1_4:52518067-52518086 Msa0169300:intron 45.0%
!! TGTAGCCAGTTGGTTTGGTT+TGG + chr1_4:52518072-52518091 Msa0169300:intron 45.0%
GATAACATGTCCCTTCCAAG+AGG - chr1_4:52518221-52518240 None:intergenic 45.0%
CTTGGAAGGGACATGTTATC+AGG + chr1_4:52518221-52518240 Msa0169300:intron 45.0%
GCTGTGCTATAGCATTGTTG+CGG + chr1_4:52518389-52518408 Msa0169300:intron 45.0%
GGTGGGTGCAAGTTAACAAA+TGG - chr1_4:52518463-52518482 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1_4:52518474-52518493 Msa0169300:intron 45.0%
TGCACCCACCTAAAACACTA+AGG - chr1_4:52518810-52518829 None:intergenic 45.0%
TGTGTGTGTGTGTGTATGTG+GGG - chr1_4:52518843-52518862 None:intergenic 45.0%
GTGTGTGTGTGTGTGTATGT+GGG - chr1_4:52518844-52518863 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTATG+TGG - chr1_4:52518845-52518864 None:intergenic 45.0%
AACGACACCATATTCTGCCA+TGG - chr1_4:52519283-52519302 None:intergenic 45.0%
!! CAAAGCTTTTTCCCACAAGG+TGG - chr1_4:52519324-52519343 None:intergenic 45.0%
CACCTTGTGGGAAAAAGCTT+TGG + chr1_4:52519322-52519341 Msa0169300:intron 45.0%
CACAGGACTGAAAATGCTGT+TGG - chr1_4:52519582-52519601 None:intergenic 45.0%
! CAACAGCATTTTCAGTCCTG+TGG + chr1_4:52519580-52519599 Msa0169300:CDS 45.0%
! TACGTTTTGCAGACACCTGA+AGG - chr1_4:52519824-52519843 None:intergenic 45.0%
GTTCCTGGATTGAAGCAGTA+CGG + chr1_4:52519849-52519868 Msa0169300:CDS 45.0%
AAGAATGGTGCAGGCATGAA+AGG - chr1_4:52519906-52519925 None:intergenic 45.0%
! TATGGTGGAAAGAATGGTGC+AGG - chr1_4:52519915-52519934 None:intergenic 45.0%
! CCCACAAAAGTACACTTGCA+AGG - chr1_4:52520215-52520234 None:intergenic 45.0%
! CAAGTGTACTTTTGTGGGCA+GGG + chr1_4:52520217-52520236 Msa0169300:intron 45.0%
! TCAGTTAGTGTTGTTGCTGC+AGG - chr1_4:52520343-52520362 None:intergenic 45.0%
ATCTTGTGTGCCTGCTATCA+TGG + chr1_4:52520438-52520457 Msa0169300:intron 45.0%
CTACAATCTGCCATGATAGC+AGG - chr1_4:52520451-52520470 None:intergenic 45.0%
TGTAGTCCATGCATTTAGGG+TGG + chr1_4:52520466-52520485 Msa0169300:intron 45.0%
CCAAAACCACCCTAAATGCA+TGG - chr1_4:52520475-52520494 None:intergenic 45.0%
!! CCATGCATTTAGGGTGGTTT+TGG + chr1_4:52520472-52520491 Msa0169300:intron 45.0%
ACTGTGACTGGATCAACAGT+AGG + chr1_4:52520898-52520917 Msa0169300:intron 45.0%
GAACTAGTATGGCCTGTATC+GGG - chr1_4:52521118-52521137 None:intergenic 45.0%
CAGGTAAACCTCAATGACTC+AGG - chr1_4:52521338-52521357 None:intergenic 45.0%
GAGGTTTACCTGTGCAATAG+TGG + chr1_4:52521346-52521365 Msa0169300:three_prime_UTR 45.0%
GTTTACCTGTGCAATAGTGG+AGG + chr1_4:52521349-52521368 Msa0169300:three_prime_UTR 45.0%
! AATAGTGGAGGCAACTATGC+AGG + chr1_4:52521361-52521380 Msa0169300:three_prime_UTR 45.0%
! ATAGTGGAGGCAACTATGCA+GGG + chr1_4:52521362-52521381 Msa0169300:three_prime_UTR 45.0%
! GTTTGAAGCAGGGTTTACTG+TGG + chr1_4:52521540-52521559 Msa0169300:three_prime_UTR 45.0%
!! TATTAAAAGAATATTATAAA+AGG + chr1_4:52516554-52516573 Msa0169300:five_prime_UTR 5.0%
!! ATTAAAAGAATATTATAAAA+GGG + chr1_4:52516555-52516574 Msa0169300:five_prime_UTR 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG + chr1_4:52518554-52518573 Msa0169300:intron 5.0%
GAGAGAGTGAGAGAACGACA+AGG + chr1_4:52516630-52516649 Msa0169300:five_prime_UTR 50.0%
TAGAGTAGCGAAGATGGAGC+AGG + chr1_4:52516681-52516700 Msa0169300:exon 50.0%
TGCTGACATTCCCGATGAAG+AGG + chr1_4:52516723-52516742 Msa0169300:CDS 50.0%
TCCCGATGAAGAGGTTGACA+TGG + chr1_4:52516732-52516751 Msa0169300:CDS 50.0%
!! CCTAACCTTGGTGGTGTGAT+TGG - chr1_4:52516806-52516825 None:intergenic 50.0%
CCAATCACACCACCAAGGTT+AGG + chr1_4:52516803-52516822 Msa0169300:intron 50.0%
ACACCACCAAGGTTAGGGTT+AGG + chr1_4:52516809-52516828 Msa0169300:intron 50.0%
CACCACCAAGGTTAGGGTTA+GGG + chr1_4:52516810-52516829 Msa0169300:intron 50.0%
AACCCTAACCCTAACCTTGG+TGG - chr1_4:52516815-52516834 None:intergenic 50.0%
GAAGAGGCTGAAAGAGATCG+AGG + chr1_4:52516915-52516934 Msa0169300:CDS 50.0%
! AAAGAGATGGGCGCTGTTCA+AGG + chr1_4:52516979-52516998 Msa0169300:CDS 50.0%
TGAGATACAGAAGACCCAGC+AGG - chr1_4:52517144-52517163 None:intergenic 50.0%
CCATAGGTACCTACCATACC+AGG - chr1_4:52517843-52517862 None:intergenic 50.0%
CCTGGTATGGTAGGTACCTA+TGG + chr1_4:52517840-52517859 Msa0169300:intron 50.0%
TCGCTCCAAACCAAACCAAC+TGG - chr1_4:52518080-52518099 None:intergenic 50.0%
!! GTTTGGTTTGGAGCGAGTCT+GGG + chr1_4:52518084-52518103 Msa0169300:intron 50.0%
GTGTGTGTGTGTGTATGTGG+GGG - chr1_4:52518842-52518861 None:intergenic 50.0%
ATGCAGTACAGGGCTGATGA+AGG - chr1_4:52519128-52519147 None:intergenic 50.0%
TTCATCAGCCCTGTACTGCA+TGG + chr1_4:52519127-52519146 Msa0169300:intron 50.0%
ACAAGGTGGAACCGACTACA+TGG - chr1_4:52519310-52519329 None:intergenic 50.0%
! ATGTAGTCGGTTCCACCTTG+TGG + chr1_4:52519309-52519328 Msa0169300:intron 50.0%
! TGTAGTCGGTTCCACCTTGT+GGG + chr1_4:52519310-52519329 Msa0169300:intron 50.0%
GACTCTGTTCACAGTACCAC+AGG - chr1_4:52519599-52519618 None:intergenic 50.0%
CTTCCGTACTGCTTCAATCC+AGG - chr1_4:52519855-52519874 None:intergenic 50.0%
GCTTACCCGTAAGCATATGG+TGG - chr1_4:52519930-52519949 None:intergenic 50.0%
! GCAAGTGTACTTTTGTGGGC+AGG + chr1_4:52520216-52520235 Msa0169300:intron 50.0%
TATCTCGGAACCCTTCTGCA+TGG - chr1_4:52521084-52521103 None:intergenic 50.0%
CGGGTGGGTCTTCTATATCT+CGG - chr1_4:52521099-52521118 None:intergenic 50.0%
ATAGAAGACCCACCCGATAC+AGG + chr1_4:52521103-52521122 Msa0169300:CDS 50.0%
TAGTATGGCCTGTATCGGGT+GGG - chr1_4:52521114-52521133 None:intergenic 50.0%
AGTTGCCTCCACTATTGCAC+AGG - chr1_4:52521357-52521376 None:intergenic 50.0%
CGCATCCAATCACACCACCA+AGG + chr1_4:52516798-52516817 Msa0169300:CDS 55.0%
!! GGTTTGGTTTGGAGCGAGTC+TGG + chr1_4:52518083-52518102 Msa0169300:intron 55.0%
ATTGCATGGCCGACAGCTGA+AGG + chr1_4:52519720-52519739 Msa0169300:CDS 55.0%
CAGTACGGAAGAAGACCTGC+TGG + chr1_4:52519864-52519883 Msa0169300:CDS 55.0%
!! AGAAGACCTGCTGGTTTCCG+CGG + chr1_4:52519873-52519892 Msa0169300:CDS 55.0%
CTAGTATGGCCTGTATCGGG+TGG - chr1_4:52521115-52521134 None:intergenic 55.0%
GCATGAAAGGCCTCCTACCG+CGG - chr1_4:52519893-52519912 None:intergenic 60.0%
!! GACCTGCTGGTTTCCGCGGT+AGG + chr1_4:52519877-52519896 Msa0169300:CDS 65.0%
CTCCTACCGCGGAAACCAGC+AGG - chr1_4:52519882-52519901 None:intergenic 65.0%
!! CTGCTGGTTTCCGCGGTAGG+AGG + chr1_4:52519880-52519899 Msa0169300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52516486 52521580 52516486 ID=Msa0169300;Name=Msa0169300
chr1_4 mRNA 52516486 52521580 52516486 ID=Msa0169300-mRNA-1;Parent=Msa0169300;Name=Msa0169300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=208|1|1|1|0.8|0.66|6|446|217
chr1_4 exon 52516486 52516819 52516486 ID=Msa0169300-mRNA-1:exon:15587;Parent=Msa0169300-mRNA-1
chr1_4 exon 52516898 52517000 52516898 ID=Msa0169300-mRNA-1:exon:15588;Parent=Msa0169300-mRNA-1
chr1_4 exon 52517139 52517209 52517139 ID=Msa0169300-mRNA-1:exon:15589;Parent=Msa0169300-mRNA-1
chr1_4 exon 52519550 52519741 52519550 ID=Msa0169300-mRNA-1:exon:15590;Parent=Msa0169300-mRNA-1
chr1_4 exon 52519828 52519943 52519828 ID=Msa0169300-mRNA-1:exon:15591;Parent=Msa0169300-mRNA-1
chr1_4 exon 52521089 52521580 52521089 ID=Msa0169300-mRNA-1:exon:15592;Parent=Msa0169300-mRNA-1
chr1_4 five_prime_UTR 52516486 52516693 52516486 ID=Msa0169300-mRNA-1:five_prime_utr;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52516694 52516819 52516694 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52516898 52517000 52516898 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52517139 52517209 52517139 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52519550 52519741 52519550 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52519828 52519943 52519828 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 CDS 52521089 52521134 52521089 ID=Msa0169300-mRNA-1:cds;Parent=Msa0169300-mRNA-1
chr1_4 three_prime_UTR 52521135 52521580 52521135 ID=Msa0169300-mRNA-1:three_prime_utr;Parent=Msa0169300-mRNA-1
Gene Sequence

>Msa0169300

ATGGAGCAGGAAGAGCACGAAGTTTATGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGCTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGAAGGGTTCCGAGATATAGAAGACCCACCCGATACAGGCCATACTAG

Protein sequence

>Msa0169300

MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYGRVPRYRRPTRYRPY*