AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1454680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1454680 MtrunA17_Chr2g0287391 73.469 196 16 3 1 180 1 176 7.87e-76 232
Msa1454680 MtrunA17_Chr2g0287391 47.059 68 36 0 253 320 12 79 5.93e-12 63.9
Msa1454680 MtrunA17_Chr2g0287371 83.784 74 12 0 249 322 10 83 1.05e-35 130
Msa1454680 MtrunA17_Chr2g0287371 91.429 35 3 0 325 359 194 228 2.25e-14 72.0
Msa1454680 MtrunA17_Chr2g0287321 43.590 156 45 2 255 367 22 177 2.50e-32 119
Msa1454680 MtrunA17_Chr2g0287381 91.525 59 5 0 192 250 1 59 4.56e-31 112
Msa1454680 MtrunA17_Chr2g0287401 39.375 160 56 1 249 367 7 166 1.03e-24 99.0
Msa1454680 MtrunA17_Chr2g0287401 34.694 196 72 5 1 180 1 156 7.68e-15 71.6
Msa1454680 MtrunA17_Chr2g0286581 34.804 204 94 5 3 190 13 193 2.01e-24 99.0
Msa1454680 MtrunA17_Chr2g0286581 53.521 71 33 0 250 320 18 88 2.32e-17 79.7
Msa1454680 MtrunA17_Chr2g0287311 58.904 73 30 0 248 320 16 88 2.20e-22 94.0
Msa1454680 MtrunA17_Chr2g0287311 38.500 200 101 5 1 180 11 208 9.87e-18 81.3
Msa1454680 MtrunA17_Chr2g0288061 57.353 68 29 0 251 318 11 78 1.63e-16 77.0
Msa1454680 MtrunA17_Chr1g0170131 53.731 67 31 0 254 320 7 73 1.89e-16 77.8
Msa1454680 MtrunA17_Chr2g0287351 63.636 55 20 0 250 304 7 61 1.23e-15 76.3
Msa1454680 MtrunA17_Chr5g0420551 53.030 66 31 0 255 320 8 73 2.02e-15 75.1
Msa1454680 MtrunA17_Chr1g0156951 51.389 72 35 0 254 325 7 78 5.86e-15 73.6
Msa1454680 MtrunA17_Chr2g0287421 62.963 54 20 0 255 308 13 66 1.16e-14 71.6
Msa1454680 MtrunA17_Chr2g0287331 47.887 71 37 0 255 325 9 79 3.87e-14 68.6
Msa1454680 MtrunA17_Chr4g0019961 50.746 67 33 0 254 320 11 77 5.03e-14 70.1
Msa1454680 MtrunA17_Chr2g0287301 35.075 134 53 2 255 354 23 156 1.04e-13 68.2
Msa1454680 MtrunA17_Chr1g0156961 50.000 50 25 0 256 305 27 76 8.20e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 63 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGTTTGTCACATAATA+AGG 0.235361 tig0035375:-22216 Msa1454680:CDS
AAGTAGCCTTTCATTCTTCT+TGG 0.256471 tig0035375:+22241 Msa1454680:intergenic
GATAAACCAGCAGAAAGTTT+TGG 0.268570 tig0035375:+18048 Msa1454680:intergenic
TTCTGACGTGGATAATCTTT+TGG 0.310646 tig0035375:-23971 Msa1454680:CDS
GAATATGAATGTAGCTTCTA+AGG 0.326077 tig0035375:-22147 Msa1454680:CDS
CAAGCAATCCTCAGGAATTA+AGG 0.327825 tig0035375:-18526 Msa1454680:CDS
ATCCTCCAGTGCTTGGGATT+GGG 0.342543 tig0035375:+23894 Msa1454680:intergenic
GAAGAATGAAAGGCTACTTA+TGG 0.345047 tig0035375:-22237 Msa1454680:CDS
TTGATAACCCAACTCAGATT+TGG 0.351782 tig0035375:+22173 Msa1454680:intergenic
TATCCTCCAGTGCTTGGGAT+TGG 0.354112 tig0035375:+23893 Msa1454680:intergenic
TCCGGAAGAACCACCGTGTT+TGG 0.360103 tig0035375:+24399 Msa1454680:intergenic
CGAATTGAAACGGGTGTTGA+TGG 0.362790 tig0035375:-24001 Msa1454680:CDS
TTTCAGTGAACGCTCTTAGA+AGG 0.381654 tig0035375:+18447 Msa1454680:intergenic
ATTATGTCAACAATTCTATC+TGG 0.383029 tig0035375:-22288 Msa1454680:CDS
AGATCTAACCTCCAAGGCTT+TGG 0.383571 tig0035375:-24235 Msa1454680:CDS
ATTTCGATTATCAGTTCTTC+CGG 0.390404 tig0035375:+24381 Msa1454680:intergenic
ATCTGTTTAGTTCAAGCAAC+GGG 0.414443 tig0035375:-22124 Msa1454680:CDS
CATTATATCCTCCAGTGCTT+GGG 0.417270 tig0035375:+23888 Msa1454680:intergenic
TCATTATATCCTCCAGTGCT+TGG 0.419753 tig0035375:+23887 Msa1454680:intergenic
ACCAAACACGGTGGTTCTTC+CGG 0.423653 tig0035375:-24400 Msa1454680:CDS
AGCTTAGACCAAATCTGAGT+TGG 0.428182 tig0035375:-22181 Msa1454680:CDS
ATTTCGATTATCAACTCCTC+AGG 0.438283 tig0035375:+18566 Msa1454680:intergenic
TCATTTCCAGAGTTGATTCA+AGG 0.453871 tig0035375:-24359 Msa1454680:CDS
GTGTCTCCAAAACTTTCTGC+TGG 0.454560 tig0035375:-18054 Msa1454680:CDS
TCTGGAAGAAGATTTAGAAA+TGG 0.461463 tig0035375:-22270 Msa1454680:CDS
GCTTAGACCAAATCTGAGTT+GGG 0.485257 tig0035375:-22180 Msa1454680:CDS
AATCGCCGTTCTACTTGTTA+CGG 0.485512 tig0035375:-18426 Msa1454680:CDS
AGCAATGACGGCGGAAGCAA+CGG 0.488849 tig0035375:-24430 None:intergenic
GCACTTTCAGAGCTTGTTCA+CGG 0.493716 tig0035375:-24265 Msa1454680:CDS
TGCTTGACTCAACTCTAGAA+AGG 0.494070 tig0035375:+18543 Msa1454680:intergenic
GGACTGTTCCAAAGCCTTGG+AGG 0.494324 tig0035375:+24227 Msa1454680:intergenic
TCTTCTTCTTCCTCCTCTTG+AGG 0.507183 tig0035375:+24162 Msa1454680:intergenic
ATTGGACTGTTCCAAAGCCT+TGG 0.508501 tig0035375:+24224 Msa1454680:intergenic
TAAGGTGTGTTTGCAAGTTG+TGG 0.508710 tig0035375:-18508 Msa1454680:CDS
CTCTTAGAAGGTGATTCTCC+AGG 0.523863 tig0035375:+18459 Msa1454680:intergenic
AGTATTCCTTGAATCAACTC+TGG 0.529325 tig0035375:+24353 Msa1454680:intergenic
AGTTGAGTCAAGCAATCCTC+AGG 0.537079 tig0035375:-18534 Msa1454680:CDS
AGTTTGTCACATAATAAGGA+TGG 0.549319 tig0035375:-22212 Msa1454680:CDS
GCAAACCCAATCCCAAGCAC+TGG 0.551500 tig0035375:-23899 Msa1454680:CDS
CAAGGAATACTCTGCAACTG+AGG 0.574910 tig0035375:-24341 Msa1454680:CDS
CGCGGTCATGCCTCAAGAGG+AGG 0.582975 tig0035375:-24172 Msa1454680:CDS
AAAGGTCCAAGAAGAATGAA+AGG 0.591888 tig0035375:-22247 Msa1454680:CDS
GATCTGTTTAGTTCAAGCAA+CGG 0.596444 tig0035375:-22125 Msa1454680:CDS
AACCCAATCCCAAGCACTGG+AGG 0.597028 tig0035375:-23896 Msa1454680:CDS
AAGAAGATTTAGAAATGGAA+AGG 0.597603 tig0035375:-22265 Msa1454680:CDS
GTTCAAGCAACGGGAAAGTG+AGG 0.599428 tig0035375:-22115 Msa1454680:CDS
CAGAGATGACATTCAAGCTG+TGG 0.602704 tig0035375:-18090 Msa1454680:CDS
AACGGCGGTGTCACCAAACA+CGG 0.611937 tig0035375:-24412 Msa1454680:CDS
AGATGACATTCAAGCTGTGG+AGG 0.612823 tig0035375:-18087 Msa1454680:CDS
CAAACACACCTTAATTCCTG+AGG 0.617063 tig0035375:+18518 Msa1454680:intergenic
GTTTGTCACATAATAAGGAT+GGG 0.619352 tig0035375:-22211 Msa1454680:CDS
TAACGCGGTCATGCCTCAAG+AGG 0.630152 tig0035375:-24175 Msa1454680:CDS
TTTCGATTATCAACTCCTCA+GGG 0.631075 tig0035375:+18567 Msa1454680:intergenic
ATGTTGCGATATGAAAGCAT+TGG 0.637121 tig0035375:+24206 Msa1454680:intergenic
CATCAAAGATCTAACCTCCA+AGG 0.641038 tig0035375:-24241 Msa1454680:CDS
AATGACGGCGGAAGCAACGG+CGG 0.652409 tig0035375:-24427 Msa1454680:CDS
AAAGACCGTAACAAGTAGAA+CGG 0.654192 tig0035375:+18421 Msa1454680:intergenic
ACTGAACATGATTCTCCCTG+AGG 0.698815 tig0035375:-18582 Msa1454680:CDS
GATGGATTTAGTTTCTGACG+TGG 0.707895 tig0035375:-23983 Msa1454680:CDS
CTTAACGAGAGCAATGACGG+CGG 0.742276 tig0035375:-24439 None:intergenic
ATTGGGTTTGCATATCAACG+TGG 0.746293 tig0035375:+23911 Msa1454680:intergenic
GGCGGTGTCACCAAACACGG+TGG 0.758113 tig0035375:-24409 Msa1454680:CDS
GCAACATATTATAAATAACG+CGG 0.783690 tig0035375:-24190 Msa1454680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTATATATTTTTTT+AGG - tig0035375:23643-23662 Msa1454680:intron 0.0%
!!! AATATTTATATATTTTTTTA+GGG - tig0035375:23644-23663 Msa1454680:intron 0.0%
!! ATTTATTTGATTATCTAATA+TGG - tig0035375:19581-19600 Msa1454680:intron 10.0%
!! TAAAAATAAATCAATAAATC+AGG - tig0035375:21076-21095 Msa1454680:intron 10.0%
!! AAAAATAAATCAATAAATCA+GGG - tig0035375:21077-21096 Msa1454680:intron 10.0%
!!! TTTTTCCTTAAAATATAAAA+AGG + tig0035375:21232-21251 Msa1454680:intergenic 10.0%
!! AAATTGTGATTATATTTATA+CGG - tig0035375:21941-21960 Msa1454680:intron 10.0%
!! TGAAAACTATAAATTAATTA+AGG - tig0035375:22245-22264 Msa1454680:CDS 10.0%
!! GAAAACTATAAATTAATTAA+GGG - tig0035375:22246-22265 Msa1454680:CDS 10.0%
!! TTCTAAACAATAATTATATT+TGG + tig0035375:23419-23438 Msa1454680:intergenic 10.0%
!! ATTTAGTAAAAAAATATAGT+AGG + tig0035375:23589-23608 Msa1454680:intergenic 10.0%
!!! TTAGATATTTTGATGTTATT+GGG - tig0035375:18739-18758 Msa1454680:intron 15.0%
!!! TTTATTTTGATTCATAATGT+TGG - tig0035375:19095-19114 Msa1454680:intron 15.0%
!! TTAAAATATATAGCAAGAAT+CGG + tig0035375:19456-19475 Msa1454680:intergenic 15.0%
!!! ATTCTTGCTATATATTTTAA+TGG - tig0035375:19456-19475 Msa1454680:intron 15.0%
!!! TTCTTGCTATATATTTTAAT+GGG - tig0035375:19457-19476 Msa1454680:intron 15.0%
!!! ATTTTAGAATGTCATTTTTA+CGG - tig0035375:19523-19542 Msa1454680:intron 15.0%
!!! ATCTGAGTTATTTAATTTTT+AGG - tig0035375:19859-19878 Msa1454680:intron 15.0%
!!! TTATATTTTAAGGAAAAACT+AGG - tig0035375:21234-21253 Msa1454680:intron 15.0%
!! TAATATTAAAATGAAAGCTA+AGG - tig0035375:21873-21892 Msa1454680:intron 15.0%
!! AATTGTGATTATATTTATAC+GGG - tig0035375:21942-21961 Msa1454680:intron 15.0%
!! TCAACAATATTGAAATAAAT+TGG + tig0035375:22029-22048 Msa1454680:intergenic 15.0%
!! TAATGTAATTATAAAACTTC+TGG + tig0035375:22087-22106 Msa1454680:intergenic 15.0%
!! TATATCAATAAATTACCTTT+AGG + tig0035375:22190-22209 Msa1454680:intergenic 15.0%
!! AAAAATACATATTAAATCGT+TGG + tig0035375:22290-22309 Msa1454680:intergenic 15.0%
!! ATATATACCATATTACATAT+AGG - tig0035375:22877-22896 Msa1454680:intron 15.0%
!!! ATCTTTTTATAAAAAATACG+AGG - tig0035375:23082-23101 Msa1454680:intron 15.0%
!!! AGGAATTATTTATTTTGAAA+TGG - tig0035375:23102-23121 Msa1454680:intron 15.0%
!! TATATTTCATAGATATAACA+TGG + tig0035375:23251-23270 Msa1454680:intergenic 15.0%
!! TAACATTTACCATTAAAAAA+AGG - tig0035375:23391-23410 Msa1454680:intron 15.0%
!!! AGTTTGTCTTTTTTCTTTTT+TGG - tig0035375:18648-18667 Msa1454680:intron 20.0%
!!! TTAATCTGAAATTACAATGA+AGG - tig0035375:18712-18731 Msa1454680:intron 20.0%
!!! GTTAGATATTTTGATGTTAT+TGG - tig0035375:18738-18757 Msa1454680:intron 20.0%
!!! ACTGCAAATAATTTTACAAT+TGG + tig0035375:18924-18943 Msa1454680:intergenic 20.0%
!! AAATTAAAGGAAAAGAGAAT+GGG + tig0035375:19134-19153 Msa1454680:intergenic 20.0%
!!! AGTATCATGATTTTAAGATT+TGG - tig0035375:19185-19204 Msa1454680:intron 20.0%
!!! GTATCATGATTTTAAGATTT+GGG - tig0035375:19186-19205 Msa1454680:intron 20.0%
!! TGTAAAATTATTTACAGTTG+TGG - tig0035375:19483-19502 Msa1454680:intron 20.0%
!!! GTAAAAATGACATTCTAAAA+TGG + tig0035375:19524-19543 Msa1454680:intergenic 20.0%
!!! TTTTAGAATGTCATTTTTAC+GGG - tig0035375:19524-19543 Msa1454680:intron 20.0%
!! GAAAATAAAAACAAAATCAG+CGG + tig0035375:20493-20512 Msa1454680:intergenic 20.0%
!! ATAAAAATGACATACTAACA+TGG + tig0035375:20756-20775 Msa1454680:intergenic 20.0%
!!! ATTAGTTTTTCATTGATGTA+AGG - tig0035375:20774-20793 Msa1454680:intron 20.0%
!! TATACACATTTACAATGTTT+GGG + tig0035375:20992-21011 Msa1454680:intergenic 20.0%
!! TTATACACATTTACAATGTT+TGG + tig0035375:20993-21012 Msa1454680:intergenic 20.0%
!! GAAAATTGAATGACTAAAAT+TGG - tig0035375:21045-21064 Msa1454680:intron 20.0%
!! AAATATAAAAAGGCTTTCAA+TGG + tig0035375:21222-21241 Msa1454680:intergenic 20.0%
!!! GAAAGCCTTTTTATATTTTA+AGG - tig0035375:21224-21243 Msa1454680:intron 20.0%
!!! TATTAAATCGTTGGTTTAAT+TGG + tig0035375:22281-22300 Msa1454680:intergenic 20.0%
!!! CAATTTCAAGAATTAATTTG+TGG + tig0035375:22338-22357 Msa1454680:intergenic 20.0%
!! ATAGAAACCTATATGTAATA+TGG + tig0035375:22887-22906 Msa1454680:intergenic 20.0%
!!! CTTTTTTCTTTTCTTTTTCT+TGG + tig0035375:23055-23074 Msa1454680:intergenic 20.0%
!!! TATTTATTTTGAAATGGAGT+TGG - tig0035375:23108-23127 Msa1454680:intron 20.0%
!! TATATCTATGAAATATACTG+AGG - tig0035375:23254-23273 Msa1454680:intron 20.0%
!!! GAAAGAGATAAGTTTTAAAT+AGG - tig0035375:23323-23342 Msa1454680:intron 20.0%
!!! TATTTGGTACCTTTTTTTAA+TGG + tig0035375:23403-23422 Msa1454680:intergenic 20.0%
!!! TTTTTGTCGATTGTAAAAAA+AGG - tig0035375:23447-23466 Msa1454680:intron 20.0%
!!! TTTTGTCGATTGTAAAAAAA+GGG - tig0035375:23448-23467 Msa1454680:intron 20.0%
!!! ATATATTTTTTTAGGGGAAA+AGG - tig0035375:23651-23670 Msa1454680:intron 20.0%
!! TTCCGAAGTATAAAAAAAAT+CGG - tig0035375:23746-23765 Msa1454680:intron 20.0%
!!! ATAATCTATTGAAGATTTTG+AGG - tig0035375:24303-24322 Msa1454680:intron 20.0%
! GCAACATATTATAAATAACG+CGG - tig0035375:18252-18271 Msa1454680:intron 25.0%
! AAGAAAAAGACGAATTGAAA+CGG - tig0035375:18431-18450 Msa1454680:CDS 25.0%
!! ATAATCTTTTGGTGAATCTT+CGG - tig0035375:18482-18501 Msa1454680:CDS 25.0%
! GGTTATCTGATTATCTTATA+TGG - tig0035375:18669-18688 Msa1454680:intron 25.0%
! CTCAAATTGTTGTAAATGAA+TGG - tig0035375:18785-18804 Msa1454680:intron 25.0%
!!! GAATGGATTAATTAGTTGAA+TGG - tig0035375:18802-18821 Msa1454680:intron 25.0%
! TGTAAAATTATTTGCAGTTG+TGG - tig0035375:18926-18945 Msa1454680:intron 25.0%
! AAATTTCAATCTTTCATGTG+AGG - tig0035375:18951-18970 Msa1454680:intron 25.0%
! GGAAAAATTATTTGCTCAAA+TGG - tig0035375:19022-19041 Msa1454680:intron 25.0%
! GAAATTAAAGGAAAAGAGAA+TGG + tig0035375:19135-19154 Msa1454680:intergenic 25.0%
! AATCATGATACTCATTACAT+AGG + tig0035375:19177-19196 Msa1454680:intergenic 25.0%
!!! ATTAGTGTTTTTGATGCTAT+TGG - tig0035375:19663-19682 Msa1454680:intron 25.0%
!!! TTAGTGTTTTTGATGCTATT+GGG - tig0035375:19664-19683 Msa1454680:intron 25.0%
! GAGACTCAAATATTAAAACA+AGG + tig0035375:19968-19987 Msa1454680:intergenic 25.0%
! TCTTTACTATTTGAGTGTTT+GGG + tig0035375:19990-20009 Msa1454680:intergenic 25.0%
! ATCTTTACTATTTGAGTGTT+TGG + tig0035375:19991-20010 Msa1454680:intergenic 25.0%
! CACTCAAATAGTAAAGATAA+AGG - tig0035375:19993-20012 Msa1454680:intron 25.0%
! ATTGTGCAATTTAACAATTG+AGG - tig0035375:20087-20106 Msa1454680:intron 25.0%
! TACAATACTTGAGTGATTAA+AGG - tig0035375:20127-20146 Msa1454680:intron 25.0%
! ATTATGTCAACAATTCTATC+TGG - tig0035375:20154-20173 Msa1454680:intron 25.0%
! AAGAAGATTTAGAAATGGAA+AGG - tig0035375:20177-20196 Msa1454680:intron 25.0%
!!! TGGTTCTTGCTATATTTTAA+TGG - tig0035375:20688-20707 Msa1454680:intron 25.0%
!!! GGTTCTTGCTATATTTTAAT+GGG - tig0035375:20689-20708 Msa1454680:intron 25.0%
!! TTGAAATTTTATCACAACTG+CGG + tig0035375:20729-20748 Msa1454680:intergenic 25.0%
! AAACTAAAGGAAAAGAAAGA+GGG + tig0035375:20915-20934 Msa1454680:intergenic 25.0%
!!! TTAGCTTCTCACTTTTAAAT+TGG + tig0035375:21142-21161 Msa1454680:intergenic 25.0%
! ATTTAAAAGTGAGAAGCTAA+TGG - tig0035375:21142-21161 Msa1454680:intron 25.0%
! AATGGCATAATTGTACTATT+TGG - tig0035375:21160-21179 Msa1454680:intron 25.0%
! ATGGCATAATTGTACTATTT+GGG - tig0035375:21161-21180 Msa1454680:intron 25.0%
!!! TATTTTAAGGAAAAACTAGG+AGG - tig0035375:21237-21256 Msa1454680:intron 25.0%
!!! ATTTTAAGGAAAAACTAGGA+GGG - tig0035375:21238-21257 Msa1454680:intron 25.0%
!! TTCTTCATTGTCAATCATTT+TGG - tig0035375:21342-21361 Msa1454680:intron 25.0%
!! TAATGCTTTTGTTAACATCA+AGG + tig0035375:21369-21388 Msa1454680:intergenic 25.0%
! ATGTAAACAAATGTGAAATG+CGG + tig0035375:21599-21618 Msa1454680:intergenic 25.0%
! ATTAACGATATGTTATGTGT+TGG + tig0035375:21651-21670 Msa1454680:intergenic 25.0%
! CAAAAAAAAATACCGTGAAA+GGG - tig0035375:21677-21696 Msa1454680:intron 25.0%
! AATTTGAAAAGCTCTCTTTA+TGG + tig0035375:21774-21793 Msa1454680:intergenic 25.0%
!! AGAGCTTTTCAAATTCAATT+GGG - tig0035375:21779-21798 Msa1454680:intron 25.0%
!!! TATTATTTTGCAAGCAAGTT+GGG + tig0035375:21858-21877 Msa1454680:intergenic 25.0%
!!! ATATTATTTTGCAAGCAAGT+TGG + tig0035375:21859-21878 Msa1454680:intergenic 25.0%
! AAAATGAAAGCTAAGGAATT+TGG - tig0035375:21880-21899 Msa1454680:intron 25.0%
! TATTCTGTCTCGAAAAAATA+TGG + tig0035375:21993-22012 Msa1454680:intergenic 25.0%
! AACATATGCAAATTACTACA+TGG + tig0035375:22123-22142 Msa1454680:intergenic 25.0%
!! TTTTCAGTAACTCATTATCA+TGG - tig0035375:22146-22165 Msa1454680:CDS 25.0%
!!! CAATAAATTACCTTTAGGAT+TGG + tig0035375:22185-22204 Msa1454680:intergenic 25.0%
! TTCTTGAAATTGAAGATCAT+CGG - tig0035375:22346-22365 Msa1454680:intron 25.0%
! TTTCGTTAAAAACGTTAATC+TGG - tig0035375:22378-22397 Msa1454680:intron 25.0%
!!! CCATTTGATTTATTTTCCAA+CGG - tig0035375:22665-22684 Msa1454680:intron 25.0%
! GAATTCGTTCACTTATATTA+AGG - tig0035375:22716-22735 Msa1454680:intron 25.0%
! TAGAGCACACAAAAATTAAA+GGG + tig0035375:22781-22800 Msa1454680:intergenic 25.0%
!!! ATTTTTTTGTTGACGGAATT+CGG + tig0035375:23727-23746 Msa1454680:intergenic 25.0%
!!! CTCCGATTTTTTTTATACTT+CGG + tig0035375:23751-23770 Msa1454680:intergenic 25.0%
!!! GTTCAATTTCTGAGATTTTA+GGG + tig0035375:23819-23838 Msa1454680:intergenic 25.0%
!! AGTTTTTGATATTCAATTCC+TGG - tig0035375:23965-23984 Msa1454680:CDS 25.0%
! ATCTTCAATAGATTATCCAA+AGG + tig0035375:24299-24318 Msa1454680:intergenic 25.0%
!!! AAGATTTTGAGGTATTTGAA+AGG - tig0035375:24314-24333 Msa1454680:intron 25.0%
!!! AGATTTTGAGGTATTTGAAA+GGG - tig0035375:24315-24334 Msa1454680:intron 25.0%
ATTTCGATTATCAGTTCTTC+CGG + tig0035375:18064-18083 Msa1454680:intergenic 30.0%
AAGTGCTTCTTAAGGAATTT+AGG + tig0035375:18163-18182 Msa1454680:intergenic 30.0%
AGAAAAAGACGAATTGAAAC+GGG - tig0035375:18432-18451 Msa1454680:CDS 30.0%
AAGACAAACTCTGAATTAAG+AGG + tig0035375:18638-18657 Msa1454680:intergenic 30.0%
TCTTTGACCTGATAATATGT+TGG - tig0035375:18851-18870 Msa1454680:intron 30.0%
!! ATATGTTGGCTTCTTCTTAT+TGG - tig0035375:18865-18884 Msa1454680:intron 30.0%
! CTTATGTGTGTTTTACTTCT+AGG - tig0035375:19060-19079 Msa1454680:intron 30.0%
!! GTTAGTGATTTTGATGCTAT+CGG - tig0035375:19292-19311 Msa1454680:intron 30.0%
!! TTAGTGATTTTGATGCTATC+GGG - tig0035375:19293-19312 Msa1454680:intron 30.0%
TCTTTGACCTGATAATACAT+TGG - tig0035375:19406-19425 Msa1454680:intron 30.0%
!! TAGTGTTTTTGATGCTATTG+GGG - tig0035375:19665-19684 Msa1454680:intron 30.0%
CGGATAAAAATGACATAACA+GGG + tig0035375:19789-19808 Msa1454680:intergenic 30.0%
ACGGATAAAAATGACATAAC+AGG + tig0035375:19790-19809 Msa1454680:intergenic 30.0%
ATCCGTGTTTCACATAATAA+AGG - tig0035375:19804-19823 Msa1454680:intron 30.0%
TCCGTGTTTCACATAATAAA+GGG - tig0035375:19805-19824 Msa1454680:intron 30.0%
ACAAGGATACTAACTACTTA+GGG + tig0035375:19951-19970 Msa1454680:intergenic 30.0%
AACAAGGATACTAACTACTT+AGG + tig0035375:19952-19971 Msa1454680:intergenic 30.0%
AATACTTGAGTGATTAAAGG+TGG - tig0035375:20130-20149 Msa1454680:intron 30.0%
ATACTTGAGTGATTAAAGGT+GGG - tig0035375:20131-20150 Msa1454680:intron 30.0%
TCTGGAAGAAGATTTAGAAA+TGG - tig0035375:20172-20191 Msa1454680:intron 30.0%
AGTTTGTCACATAATAAGGA+TGG - tig0035375:20230-20249 Msa1454680:intron 30.0%
GTTTGTCACATAATAAGGAT+GGG - tig0035375:20231-20250 Msa1454680:intron 30.0%
GAATATGAATGTAGCTTCTA+AGG - tig0035375:20295-20314 Msa1454680:intron 30.0%
!! AAAGTGAGGAATTTTAATGG+AGG - tig0035375:20341-20360 Msa1454680:intron 30.0%
!! AAGTGAGGAATTTTAATGGA+GGG - tig0035375:20342-20361 Msa1454680:intron 30.0%
! TTATTTTCATTCGCATCTCA+AGG + tig0035375:20446-20465 Msa1454680:intergenic 30.0%
GCATCAAAATCACATTTCAA+AGG + tig0035375:20517-20536 Msa1454680:intergenic 30.0%
!!! GAGATGGTTTCTTTTTCAAA+TGG - tig0035375:20559-20578 Msa1454680:intron 30.0%
TTCAAATGGTTGTGAATGAA+TGG - tig0035375:20573-20592 Msa1454680:intron 30.0%
TCTTTGATCTGATAATACAC+CGG - tig0035375:20640-20659 Msa1454680:intron 30.0%
TGAAGAAGTAAACACACATA+AGG + tig0035375:20831-20850 Msa1454680:intergenic 30.0%
TGTTTACTTCTTCAACTTCT+AGG - tig0035375:20837-20856 Msa1454680:intron 30.0%
AACTAAAGGAAAAGAAAGAG+GGG + tig0035375:20914-20933 Msa1454680:intergenic 30.0%
GAAACTAAAGGAAAAGAAAG+AGG + tig0035375:20916-20935 Msa1454680:intergenic 30.0%
TTACTTAGGGGACTAAAAAT+GGG + tig0035375:20940-20959 Msa1454680:intergenic 30.0%
ATTACTTAGGGGACTAAAAA+TGG + tig0035375:20941-20960 Msa1454680:intergenic 30.0%
ACCATGATACTCATTACTTA+GGG + tig0035375:20953-20972 Msa1454680:intergenic 30.0%
AACCATGATACTCATTACTT+AGG + tig0035375:20954-20973 Msa1454680:intergenic 30.0%
TGATTGACAATGAAGAATGA+GGG + tig0035375:21339-21358 Msa1454680:intergenic 30.0%
ATGATTGACAATGAAGAATG+AGG + tig0035375:21340-21359 Msa1454680:intergenic 30.0%
ATCAGTCAAAAATGCTGATA+TGG - tig0035375:21390-21409 Msa1454680:intron 30.0%
ATCCAAGTCACAATTCAATT+TGG + tig0035375:21430-21449 Msa1454680:intergenic 30.0%
! AATTGAATTGTGACTTGGAT+AGG - tig0035375:21430-21449 Msa1454680:intron 30.0%
! ATTGAATTGTGACTTGGATA+GGG - tig0035375:21431-21450 Msa1454680:intron 30.0%
TGGTTATTGAGGTTTGAATA+CGG + tig0035375:21521-21540 Msa1454680:intergenic 30.0%
!!! CCTTTCACGGTATTTTTTTT+TGG + tig0035375:21679-21698 Msa1454680:intergenic 30.0%
CCAAAAAAAAATACCGTGAA+AGG - tig0035375:21676-21695 Msa1454680:intron 30.0%
ACATGAAATGAAATGAAGCT+TGG + tig0035375:21737-21756 Msa1454680:intergenic 30.0%
! GAGAGCTTTTCAAATTCAAT+TGG - tig0035375:21778-21797 Msa1454680:intron 30.0%
! GAGCTTTTCAAATTCAATTG+GGG - tig0035375:21780-21799 Msa1454680:intron 30.0%
GCAAGTGTTTATTACAGTTT+AGG - tig0035375:22400-22419 Msa1454680:intron 30.0%
GAGTGATAATACTTCATTGT+TGG - tig0035375:22516-22535 Msa1454680:intron 30.0%
!! ATGCAAATACTGAAGTATTG+AGG + tig0035375:22558-22577 Msa1454680:intergenic 30.0%
GAAATAAAGATGAATGTTGC+AGG + tig0035375:22605-22624 Msa1454680:intergenic 30.0%
CCGTTGGAAAATAAATCAAA+TGG + tig0035375:22668-22687 Msa1454680:intergenic 30.0%
GTAGAGCACACAAAAATTAA+AGG + tig0035375:22782-22801 Msa1454680:intergenic 30.0%
AACGAAGTTGTAAATCCATT+TGG - tig0035375:22928-22947 Msa1454680:intron 30.0%
ACGAAGTTGTAAATCCATTT+GGG - tig0035375:22929-22948 Msa1454680:intron 30.0%
! GTCTCAAGTTCAATGTTTTA+CGG - tig0035375:23007-23026 Msa1454680:intron 30.0%
CTATGAAATATACTGAGGTT+TGG - tig0035375:23259-23278 Msa1454680:intron 30.0%
!!! AAAAGGAGAGTTATTTTGAG+AGG - tig0035375:23668-23687 Msa1454680:intron 30.0%
!!! AAAGGAGAGTTATTTTGAGA+GGG - tig0035375:23669-23688 Msa1454680:intron 30.0%
!!! CTTCGGAATTTTTTTGTTGA+CGG + tig0035375:23734-23753 Msa1454680:intergenic 30.0%
!! ATTTGGAGCATTTTCGATTT+CGG + tig0035375:23774-23793 Msa1454680:intergenic 30.0%
!!! CGTTCAATTTCTGAGATTTT+AGG + tig0035375:23820-23839 Msa1454680:intergenic 30.0%
AAATCTCAGAAATTGAACGA+CGG - tig0035375:23821-23840 Msa1454680:intron 30.0%
TTATCAATTACATCCATCAC+CGG + tig0035375:24251-24270 Msa1454680:intergenic 30.0%
! TCATTTCCAGAGTTGATTCA+AGG - tig0035375:18083-18102 Msa1454680:CDS 35.0%
AGTATTCCTTGAATCAACTC+TGG + tig0035375:18092-18111 Msa1454680:intergenic 35.0%
! ATGTTGCGATATGAAAGCAT+TGG + tig0035375:18239-18258 Msa1454680:intergenic 35.0%
! TTCTGACGTGGATAATCTTT+TGG - tig0035375:18471-18490 Msa1454680:CDS 35.0%
GAAGAAGCCAACATATTATC+AGG + tig0035375:18861-18880 Msa1454680:intergenic 35.0%
CTAAACATGGGGGAAATTAA+AGG + tig0035375:19147-19166 Msa1454680:intergenic 35.0%
ATAGGAGACTCACTAAACAT+GGG + tig0035375:19159-19178 Msa1454680:intergenic 35.0%
TGTGTACCATTGAAAGATGA+AGG - tig0035375:19227-19246 Msa1454680:intron 35.0%
! CTTTTGCCTTCATCTTTCAA+TGG + tig0035375:19236-19255 Msa1454680:intergenic 35.0%
ACTTCCTCAAATTGTTAGTG+TGG - tig0035375:19266-19285 Msa1454680:intron 35.0%
CATTCCACACTAACAATTTG+AGG + tig0035375:19273-19292 Msa1454680:intergenic 35.0%
GAAGAAGCCAATGTATTATC+AGG + tig0035375:19416-19435 Msa1454680:intergenic 35.0%
!! ATACATTGGCTTCTTCTTGT+TGG - tig0035375:19420-19439 Msa1454680:intron 35.0%
CTCAAATGGTTGTGAATGAA+TGG - tig0035375:19710-19729 Msa1454680:intron 35.0%
CCCCTTTATTATGTGAAACA+CGG + tig0035375:19809-19828 Msa1454680:intergenic 35.0%
CCGTGTTTCACATAATAAAG+GGG - tig0035375:19806-19825 Msa1454680:intron 35.0%
ACTACTTAGGGGACAAAAAA+GGG + tig0035375:19939-19958 Msa1454680:intergenic 35.0%
AACTACTTAGGGGACAAAAA+AGG + tig0035375:19940-19959 Msa1454680:intergenic 35.0%
CAAGGATACTAACTACTTAG+GGG + tig0035375:19950-19969 Msa1454680:intergenic 35.0%
AATTAGAGCTTATCGTGTGA+TGG - tig0035375:20045-20064 Msa1454680:intron 35.0%
ATTAGAGCTTATCGTGTGAT+GGG - tig0035375:20046-20065 Msa1454680:intron 35.0%
AAAGGTCCAAGAAGAATGAA+AGG - tig0035375:20195-20214 Msa1454680:intron 35.0%
AAGTAGCCTTTCATTCTTCT+TGG + tig0035375:20204-20223 Msa1454680:intergenic 35.0%
GAAGAATGAAAGGCTACTTA+TGG - tig0035375:20205-20224 Msa1454680:intron 35.0%
GGAGAGTTTGTCACATAATA+AGG - tig0035375:20226-20245 Msa1454680:intron 35.0%
! TTGATAACCCAACTCAGATT+TGG + tig0035375:20272-20291 Msa1454680:intergenic 35.0%
! GATCTGTTTAGTTCAAGCAA+CGG - tig0035375:20317-20336 Msa1454680:intron 35.0%
! ATCTGTTTAGTTCAAGCAAC+GGG - tig0035375:20318-20337 Msa1454680:intron 35.0%
! GGGAAAGTGAGGAATTTTAA+TGG - tig0035375:20338-20357 Msa1454680:intron 35.0%
!! AGTGAGGAATTTTAATGGAG+GGG - tig0035375:20343-20362 Msa1454680:intron 35.0%
!!! AGTCATTCATGGTTTTGAGT+TGG - tig0035375:20392-20411 Msa1454680:intron 35.0%
TTGTGTTCAGAAAACAGAGA+TGG - tig0035375:20543-20562 Msa1454680:intron 35.0%
!! AAGAAGCATTCTTTGTTCAG+TGG + tig0035375:20624-20643 Msa1454680:intergenic 35.0%
AATATAGCAAGAACCAGTTC+TGG + tig0035375:20684-20703 Msa1454680:intergenic 35.0%
CTAAAAATGGGGGAAACTAA+AGG + tig0035375:20928-20947 Msa1454680:intergenic 35.0%
TACTTAGGGGACTAAAAATG+GGG + tig0035375:20939-20958 Msa1454680:intergenic 35.0%
CCATGATACTCATTACTTAG+GGG + tig0035375:20952-20971 Msa1454680:intergenic 35.0%
AATCAGGGTTTATTGCACAA+TGG - tig0035375:21092-21111 Msa1454680:intron 35.0%
TTGCACAATGGAGAAACATT+AGG - tig0035375:21104-21123 Msa1454680:intron 35.0%
TGCACAATGGAGAAACATTA+GGG - tig0035375:21105-21124 Msa1454680:intron 35.0%
AGTGTAAGACGTTGTCATAT+TGG - tig0035375:21285-21304 Msa1454680:intron 35.0%
GAAGAATGAGGGATTTAACT+AGG + tig0035375:21328-21347 Msa1454680:intergenic 35.0%
GACCAAATTGAATTGTGACT+TGG - tig0035375:21425-21444 Msa1454680:intron 35.0%
! ATGTTATTCCCCCTTCATTT+TGG + tig0035375:21458-21477 Msa1454680:intergenic 35.0%
GGAAGTGATGATAAAGAAGA+AGG + tig0035375:21485-21504 Msa1454680:intergenic 35.0%
GGTTATTGAGGTTTGAATAC+GGG + tig0035375:21520-21539 Msa1454680:intergenic 35.0%
ATGGAGAAACTTGGTTATTG+AGG + tig0035375:21532-21551 Msa1454680:intergenic 35.0%
!! ATCAGTTAAGAAGCATCACT+TGG + tig0035375:21555-21574 Msa1454680:intergenic 35.0%
AACTGATGTTCATTGCTATC+AGG - tig0035375:21568-21587 Msa1454680:intron 35.0%
!!! CACGGTATTTTTTTTTGGAG+AGG + tig0035375:21674-21693 Msa1454680:intergenic 35.0%
AAGGATATCTCGTGATTGAA+CGG - tig0035375:21707-21726 Msa1454680:intron 35.0%
TGAAATGAAATGAAGCTTGG+TGG + tig0035375:21734-21753 Msa1454680:intergenic 35.0%
!! AATTGGGGATTTTAATCTGC+AGG - tig0035375:21795-21814 Msa1454680:intron 35.0%
GTAACTCATTATCATGGCAA+AGG - tig0035375:22152-22171 Msa1454680:CDS 35.0%
! CATTGCAATTTTGCAAAGAG+TGG - tig0035375:22472-22491 Msa1454680:intron 35.0%
AGAGTGGATACAGAAGAAAA+TGG - tig0035375:22488-22507 Msa1454680:intron 35.0%
TGGATACAGAAGAAAATGGA+GGG - tig0035375:22492-22511 Msa1454680:intron 35.0%
GTGTGCTCTACTTCAAAATT+TGG - tig0035375:22791-22810 Msa1454680:intron 35.0%
AGTTGTAAATCCATTTGGGT+TGG - tig0035375:22933-22952 Msa1454680:intron 35.0%
!! CTTGAGAAGAGTATTATCCA+AGG + tig0035375:22987-23006 Msa1454680:intergenic 35.0%
CTTGGATAATACTCTTCTCA+AGG - tig0035375:22985-23004 Msa1454680:intron 35.0%
! ACGGTGTCAATTTAACAACA+AGG - tig0035375:23026-23045 Msa1454680:intron 35.0%
TTTAGGGATTCATTTCCGTT+CGG + tig0035375:23803-23822 Msa1454680:intergenic 35.0%
TTTCGATTATCAACTCCTCA+GGG + tig0035375:23878-23897 Msa1454680:intergenic 35.0%
ATTTCGATTATCAACTCCTC+AGG + tig0035375:23879-23898 Msa1454680:intergenic 35.0%
AAAGACCGTAACAAGTAGAA+CGG + tig0035375:24024-24043 Msa1454680:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+CGG - tig0035375:18307-18326 Msa1454680:intron 35.0%
TGTAATTGATAAGATACGCC+AGG - tig0035375:24259-24278 Msa1454680:CDS 35.0%
! GATAAACCAGCAGAAAGTTT+TGG + tig0035375:24397-24416 Msa1454680:intergenic 35.0%
GAATTCCATCGTTTGCAAAC+GGG + tig0035375:18127-18146 Msa1454680:intergenic 40.0%
CGAATTCCATCGTTTGCAAA+CGG + tig0035375:18128-18147 Msa1454680:intergenic 40.0%
!! AGCTCTGAAAGTGCTTCTTA+AGG + tig0035375:18171-18190 Msa1454680:intergenic 40.0%
CATCAAAGATCTAACCTCCA+AGG - tig0035375:18201-18220 Msa1454680:intron 40.0%
! GATGGATTTAGTTTCTGACG+TGG - tig0035375:18459-18478 Msa1454680:CDS 40.0%
ATTGGGTTTGCATATCAACG+TGG + tig0035375:18534-18553 Msa1454680:intergenic 40.0%
CATTATATCCTCCAGTGCTT+GGG + tig0035375:18557-18576 Msa1454680:intergenic 40.0%
TCATTATATCCTCCAGTGCT+TGG + tig0035375:18558-18577 Msa1454680:intergenic 40.0%
TGCAAACTCATTTGCACTTG+TGG - tig0035375:19001-19020 Msa1454680:intron 40.0%
! AAAGAGAATGGGTTTGCACA+AGG + tig0035375:19123-19142 Msa1454680:intergenic 40.0%
TAGGAGACTCACTAAACATG+GGG + tig0035375:19158-19177 Msa1454680:intergenic 40.0%
CATAGGAGACTCACTAAACA+TGG + tig0035375:19160-19179 Msa1454680:intergenic 40.0%
ATTGGGGTTGTGTTCAGATA+TGG - tig0035375:19681-19700 Msa1454680:intron 40.0%
AGATATGGTTCTCGCTCAAA+TGG - tig0035375:19696-19715 Msa1454680:intron 40.0%
TACTTAGGGGACAAAAAAGG+GGG + tig0035375:19937-19956 Msa1454680:intergenic 40.0%
CTACTTAGGGGACAAAAAAG+GGG + tig0035375:19938-19957 Msa1454680:intergenic 40.0%
! AAAAAGCGCACAATCGCAAT+TGG - tig0035375:20017-20036 Msa1454680:intron 40.0%
TTAGAGCTTATCGTGTGATG+GGG - tig0035375:20047-20066 Msa1454680:intron 40.0%
! TCGTGTGATGGGGAAAAATT+AGG - tig0035375:20057-20076 Msa1454680:intron 40.0%
! CGTGTGATGGGGAAAAATTA+GGG - tig0035375:20058-20077 Msa1454680:intron 40.0%
AGCTTAGACCAAATCTGAGT+TGG - tig0035375:20261-20280 Msa1454680:intron 40.0%
GCTTAGACCAAATCTGAGTT+GGG - tig0035375:20262-20281 Msa1454680:intron 40.0%
GAATGGTGAAGAGTCATTCA+TGG - tig0035375:20381-20400 Msa1454680:intron 40.0%
AAAGAGGGGTTTATTGCACA+AGG + tig0035375:20900-20919 Msa1454680:intergenic 40.0%
ACTTAGGGGACTAAAAATGG+GGG + tig0035375:20938-20957 Msa1454680:intergenic 40.0%
CCCCTAAGTAATGAGTATCA+TGG - tig0035375:20949-20968 Msa1454680:intron 40.0%
ACTTTCAGGGACCAAAATGA+TGG + tig0035375:21268-21287 Msa1454680:intergenic 40.0%
GACAACGTCTTACACTTTCA+GGG + tig0035375:21281-21300 Msa1454680:intergenic 40.0%
TGACAACGTCTTACACTTTC+AGG + tig0035375:21282-21301 Msa1454680:intergenic 40.0%
TTGGATAGGGACCAAAATGA+AGG - tig0035375:21444-21463 Msa1454680:intron 40.0%
TGGATAGGGACCAAAATGAA+GGG - tig0035375:21445-21464 Msa1454680:intron 40.0%
ATCACTTGGATGGAGAAACT+TGG + tig0035375:21541-21560 Msa1454680:intergenic 40.0%
!! GTTAAGAAGCATCACTTGGA+TGG + tig0035375:21551-21570 Msa1454680:intergenic 40.0%
ATTGCATTCTCTGTACTCCT+TGG - tig0035375:21620-21639 Msa1454680:intron 40.0%
!! GTTATGTGTTGGCTTTACCA+AGG + tig0035375:21640-21659 Msa1454680:intergenic 40.0%
! TCCTTTTCTCAACCCTTTCA+CGG + tig0035375:21692-21711 Msa1454680:intergenic 40.0%
ATTATCATGGCAAAGGACCT+AGG - tig0035375:22159-22178 Msa1454680:CDS 40.0%
!! ATTACCTTTAGGATTGGCCT+AGG + tig0035375:22179-22198 Msa1454680:intergenic 40.0%
!! CGTTGGTTTAATTGGACGAT+TGG + tig0035375:22273-22292 Msa1454680:intergenic 40.0%
TAGTGAACGTGAGTACATGA+CGG + tig0035375:22440-22459 Msa1454680:intergenic 40.0%
GTGGATACAGAAGAAAATGG+AGG - tig0035375:22491-22510 Msa1454680:intron 40.0%
! CTTCATTGTTGGCTGTTACA+TGG - tig0035375:22527-22546 Msa1454680:intron 40.0%
TTGCAGGTTTACTGTTCTTC+GGG + tig0035375:22589-22608 Msa1454680:intergenic 40.0%
GTTGCAGGTTTACTGTTCTT+CGG + tig0035375:22590-22609 Msa1454680:intergenic 40.0%
!! TAAATCCATTTGGGTTGGTC+TGG - tig0035375:22938-22957 Msa1454680:intron 40.0%
! ATGATCTTGGCTTGAAACCT+TGG - tig0035375:22967-22986 Msa1454680:intron 40.0%
AGATCGAACATTGACGATGT+AGG - tig0035375:23525-23544 Msa1454680:intron 40.0%
! CATGATTAGTCAGAGTGGTA+AGG + tig0035375:23559-23578 Msa1454680:intergenic 40.0%
! ACAGACATGATTAGTCAGAG+TGG + tig0035375:23564-23583 Msa1454680:intergenic 40.0%
TTAGGGATTCATTTCCGTTC+GGG + tig0035375:23802-23821 Msa1454680:intergenic 40.0%
! TGCTTGACTCAACTCTAGAA+AGG + tig0035375:23902-23921 Msa1454680:intergenic 40.0%
CAAGCAATCCTCAGGAATTA+AGG - tig0035375:23916-23935 Msa1454680:CDS 40.0%
CAAACACACCTTAATTCCTG+AGG + tig0035375:23927-23946 Msa1454680:intergenic 40.0%
TAAGGTGTGTTTGCAAGTTG+TGG - tig0035375:23934-23953 Msa1454680:CDS 40.0%
TTTCAGTGAACGCTCTTAGA+AGG + tig0035375:23998-24017 Msa1454680:intergenic 40.0%
! AATCGCCGTTCTACTTGTTA+CGG - tig0035375:24016-24035 Msa1454680:CDS 40.0%
! GATGACGATGATGATGTAGA+AGG - tig0035375:24203-24222 Msa1454680:CDS 40.0%
AGAAGGAGAAGATGTTGAAG+AGG - tig0035375:24220-24239 Msa1454680:CDS 40.0%
AGATGTTGAAGAGGAAGAAC+CGG - tig0035375:24229-24248 Msa1454680:CDS 40.0%
TGATAAGATACGCCAGGAAA+AGG - tig0035375:24265-24284 Msa1454680:CDS 40.0%
CAAGGAATACTCTGCAACTG+AGG - tig0035375:18101-18120 Msa1454680:CDS 45.0%
! GCACTTTCAGAGCTTGTTCA+CGG - tig0035375:18177-18196 Msa1454680:intron 45.0%
AGATCTAACCTCCAAGGCTT+TGG - tig0035375:18207-18226 Msa1454680:intron 45.0%
ATTGGACTGTTCCAAAGCCT+TGG + tig0035375:18221-18240 Msa1454680:intergenic 45.0%
TCTTCTTCTTCCTCCTCTTG+AGG + tig0035375:18283-18302 Msa1454680:intergenic 45.0%
!! CGAATTGAAACGGGTGTTGA+TGG - tig0035375:18441-18460 Msa1454680:CDS 45.0%
AGGAGACTCACTAAACATGG+GGG + tig0035375:19157-19176 Msa1454680:intergenic 45.0%
GGATGTGAAATGCTGCTGAA+TGG - tig0035375:20364-20383 Msa1454680:intron 45.0%
!!! TTCATGGTTTTGAGTTGGCC+TGG - tig0035375:20397-20416 Msa1454680:intron 45.0%
!!! TCATGGTTTTGAGTTGGCCT+GGG - tig0035375:20398-20417 Msa1454680:intron 45.0%
!! ATACACCGGCTTCTTCTTGT+TGG - tig0035375:20654-20673 Msa1454680:intron 45.0%
GTGTTCCAACAAGAAGAAGC+CGG + tig0035375:20662-20681 Msa1454680:intergenic 45.0%
TCTTGTTGGAACACCAGAAC+TGG - tig0035375:20668-20687 Msa1454680:intron 45.0%
! AGGAGGGCAAACCATCATTT+TGG - tig0035375:21254-21273 Msa1454680:intron 45.0%
GGATAGGGACCAAAATGAAG+GGG - tig0035375:21446-21465 Msa1454680:intron 45.0%
GATAGGGACCAAAATGAAGG+GGG - tig0035375:21447-21466 Msa1454680:intron 45.0%
GAATACGGGAGAGAGATGTT+GGG + tig0035375:21506-21525 Msa1454680:intergenic 45.0%
TGAATACGGGAGAGAGATGT+TGG + tig0035375:21507-21526 Msa1454680:intergenic 45.0%
ACCGTGAAAGGGTTGAGAAA+AGG - tig0035375:21688-21707 Msa1454680:intron 45.0%
GTCAAACAAAGCTAGACCGT+TGG + tig0035375:22684-22703 Msa1454680:intergenic 45.0%
GGTCTGGTCATCTATGATCT+TGG - tig0035375:22954-22973 Msa1454680:intron 45.0%
ACTGAACATGATTCTCCCTG+AGG - tig0035375:23860-23879 Msa1454680:intron 45.0%
AGTTGAGTCAAGCAATCCTC+AGG - tig0035375:23908-23927 Msa1454680:CDS 45.0%
CTCTTAGAAGGTGATTCTCC+AGG + tig0035375:23986-24005 Msa1454680:intergenic 45.0%
TAAGATACGCCAGGAAAAGG+AGG - tig0035375:24268-24287 Msa1454680:CDS 45.0%
CAGAGATGACATTCAAGCTG+TGG - tig0035375:24352-24371 Msa1454680:CDS 45.0%
AGATGACATTCAAGCTGTGG+AGG - tig0035375:24355-24374 Msa1454680:CDS 45.0%
GTGTCTCCAAAACTTTCTGC+TGG - tig0035375:24388-24407 Msa1454680:CDS 45.0%
!!! AAAATAAAGATTTTTTTTTA+AGG + tig0035375:22636-22655 Msa1454680:intergenic 5.0%
!!! TTTTTTTTTATTTCAAAATT+TGG - tig0035375:22741-22760 Msa1454680:intron 5.0%
!!! ATATTTATATATTTTTTTAG+GGG - tig0035375:23645-23664 Msa1454680:intron 5.0%
ACCAAACACGGTGGTTCTTC+CGG - tig0035375:18042-18061 Msa1454680:CDS 50.0%
ATCCTCCAGTGCTTGGGATT+GGG + tig0035375:18551-18570 Msa1454680:intergenic 50.0%
TATCCTCCAGTGCTTGGGAT+TGG + tig0035375:18552-18571 Msa1454680:intergenic 50.0%
GTTCAAGCAACGGGAAAGTG+AGG - tig0035375:20327-20346 Msa1454680:intron 50.0%
! CAAGTTGGGCATGTGGATTG+TGG + tig0035375:21844-21863 Msa1454680:intergenic 50.0%
! TTGCAAGCAAGTTGGGCATG+TGG + tig0035375:21851-21870 Msa1454680:intergenic 50.0%
AGGACCTAGGCCAATCCTAA+AGG - tig0035375:22172-22191 Msa1454680:CDS 50.0%
GATGACCAGACCAACCCAAA+TGG + tig0035375:22946-22965 Msa1454680:intergenic 50.0%
TTTCCGTTCGGGTCGGAATT+TGG + tig0035375:23791-23810 Msa1454680:intergenic 50.0%
GGATTCATTTCCGTTCGGGT+CGG + tig0035375:23798-23817 Msa1454680:intergenic 50.0%
! AAATTGAACGACGGCGCTGA+TGG - tig0035375:23830-23849 Msa1454680:intron 50.0%
TGAAGAGGAAGAACCGGTGA+TGG - tig0035375:24235-24254 Msa1454680:CDS 50.0%
! AAGGAGCTACCTCCTTTTCC+TGG + tig0035375:24280-24299 Msa1454680:intergenic 50.0%
GGAAAAGGAGGTAGCTCCTT+TGG - tig0035375:24280-24299 Msa1454680:intron 50.0%
!! AACGGCGGTGTCACCAAACA+CGG - tig0035375:18030-18049 Msa1454680:CDS 55.0%
TCCGGAAGAACCACCGTGTT+TGG + tig0035375:18046-18065 Msa1454680:intergenic 55.0%
TGAGGCCCGTTTGCAAACGA+TGG - tig0035375:18119-18138 Msa1454680:CDS 55.0%
GGACTGTTCCAAAGCCTTGG+AGG + tig0035375:18218-18237 Msa1454680:intergenic 55.0%
TAACGCGGTCATGCCTCAAG+AGG - tig0035375:18267-18286 Msa1454680:intron 55.0%
GCAAACCCAATCCCAAGCAC+TGG - tig0035375:18543-18562 Msa1454680:CDS 55.0%
!! AACCCAATCCCAAGCACTGG+AGG - tig0035375:18546-18565 Msa1454680:CDS 55.0%
!! TTTGAGTTGGCCTGGGAAGC+AGG - tig0035375:20405-20424 Msa1454680:intron 55.0%
CATTGTGAAGCCTGCTTCCC+AGG + tig0035375:20418-20437 Msa1454680:intergenic 55.0%
GCTCCAAATTCCGACCCGAA+CGG - tig0035375:23785-23804 Msa1454680:intron 55.0%
!! TTGAACGACGGCGCTGATGG+CGG - tig0035375:23833-23852 Msa1454680:intron 60.0%
!! GGCGGTGTCACCAAACACGG+TGG - tig0035375:18033-18052 Msa1454680:CDS 65.0%
CGCGGTCATGCCTCAAGAGG+AGG - tig0035375:18270-18289 Msa1454680:intron 65.0%
Chromosome Type Strat End Strand Name
tig0035375 gene 18016 24448 18016 ID=Msa1454680;Name=Msa1454680
tig0035375 mRNA 18016 24448 18016 ID=Msa1454680-mRNA-1;Parent=Msa1454680;Name=Msa1454680-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|5|0|368
tig0035375 exon 24338 24448 24338 ID=Msa1454680-mRNA-1:exon:19894;Parent=Msa1454680-mRNA-1
tig0035375 exon 23870 24289 23870 ID=Msa1454680-mRNA-1:exon:19893;Parent=Msa1454680-mRNA-1
tig0035375 exon 22097 22315 22097 ID=Msa1454680-mRNA-1:exon:19892;Parent=Msa1454680-mRNA-1
tig0035375 exon 18382 18606 18382 ID=Msa1454680-mRNA-1:exon:19891;Parent=Msa1454680-mRNA-1
tig0035375 exon 18016 18147 18016 ID=Msa1454680-mRNA-1:exon:19890;Parent=Msa1454680-mRNA-1
tig0035375 CDS 24338 24448 24338 ID=Msa1454680-mRNA-1:cds;Parent=Msa1454680-mRNA-1
tig0035375 CDS 23870 24289 23870 ID=Msa1454680-mRNA-1:cds;Parent=Msa1454680-mRNA-1
tig0035375 CDS 22097 22315 22097 ID=Msa1454680-mRNA-1:cds;Parent=Msa1454680-mRNA-1
tig0035375 CDS 18382 18606 18382 ID=Msa1454680-mRNA-1:cds;Parent=Msa1454680-mRNA-1
tig0035375 CDS 18016 18147 18016 ID=Msa1454680-mRNA-1:cds;Parent=Msa1454680-mRNA-1
Gene Sequence

>Msa1454680

ATGACGGCGGAAGCAACGGCGGTGTCACCAAACACGGTGGTTCTTCCGGAAGAACTGATAATCGAAATCATTTCCAGAGTTGATTCAAGGAATACTCTGCAACTGAGGCCCAAGCACTTTCAGAGCTTGTTCACGGACATCAAAGATCTAACCTCCAAGGCTTTGGAACAGTCCAATGCTTTCATATCGCAACATATTATAAATAACGCGGTCATGCCTCAAGAGGAGGAAGAAGAAGATGCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCTGCTGTTGTTGAAGAAGAAGATGTTGTTGTTGCTGCTGTTGATGAAGAAGAAGATGTTGCTGCTGTTGATGAAGAAAAAGACGAATTGAAACGGGTGTTGATGGATTTAGTTTCTGACGTGGATAATCTTTTGGTGAATCTTCGGTTTATCAAAGACAATACAGAAACTATCCACGTTGATATGCAAACCCAATCCCAAGCACTGGAGGATATAATGAAGTGTTTTCGAAGCTTTGTGGGATTATGTCAACAATTCTATCTGGAAGAAGATTTAGAAATGGAAAGGTCCAAGAAGAATGAAAGGCTACTTATGGAGAGTTTGTCACATAATAAGGATGGGTGTTTAGAGCTTAGACCAAATCTGAGTTGGGTTATCAAATTGAATATGAATGTAGCTTCTAAGGATCTGTTTAGTTCAAGCAACGGGAAAGTGAGGAATTTTAATGGAGGGGATTCACTGAACATGATTCTCCCTGAGGAGTTGATAATCGAAATCCTTTCTAGAGTTGAGTCAAGCAATCCTCAGGAATTAAGGTGTGTTTGCAAGTTGTGGAAGTCACTAGTTTTTGATATTCAATTCCTGGAGAATCACCTTCTAAGAGCGTTCACTGAAATCGCCGTTCTACTTGTTACGGTCTTTGAGAAATTAAAGTCTTTCAAGTCGCTTCAAGAAGAAGAAATTTTGAGGTATTTGAAAGGGAAATTTGAAACTATCAGAGATGACATTCAAGCTGTGGAGGATAGAGTCAAGTGTCTCCAAAACTTTCTGCTGGTTTATCTCAAGTCAGCAAAATCTTCATCTTCTTCTTAG

Protein sequence

>Msa1454680

MTAEATAVSPNTVVLPEELIIEIISRVDSRNTLQLRPKHFQSLFTDIKDLTSKALEQSNAFISQHIINNAVMPQEEEEEDAEEEEEEEEEEEEEEEEDAAVVEEEDVVVAAVDEEEDVAAVDEEKDELKRVLMDLVSDVDNLLVNLRFIKDNTETIHVDMQTQSQALEDIMKCFRSFVGLCQQFYLEEDLEMERSKKNERLLMESLSHNKDGCLELRPNLSWVIKLNMNVASKDLFSSSNGKVRNFNGGDSLNMILPEELIIEILSRVESSNPQELRCVCKLWKSLVFDIQFLENHLLRAFTEIAVLLVTVFEKLKSFKSLQEEEILRYLKGKFETIRDDIQAVEDRVKCLQNFLLVYLKSAKSSSSS*