AlfalfaGEDB | Msa0420540

M. sativa cultivar zhongmu-4 / Msa0420540

KEGG: -
GO: -
PFAM: PF03016.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0420540	AES71688.2	96.330	327	12	0	1	327	115	441	0.0	666

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0420540	sp\|Q9SSE8\|GLYT1_ARATH	68.598	328	102	1	1	327	139	466	1.13e-172	490

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0420540	G7J7C8	96.330	327	12	0	1	327	115	441	0.0	666

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011720	Msa0420540	0.824942	6.141145e-54	-8.615850e-47
Msa0012440	Msa0420540	0.832430	9.494894e-56	-8.615850e-47
Msa0057240	Msa0420540	0.830009	3.737264e-55	-8.615850e-47
Msa0060600	Msa0420540	0.803441	3.481523e-49	-8.615850e-47
Msa0130010	Msa0420540	0.817378	3.401905e-52	-8.615850e-47
Msa0149560	Msa0420540	0.834259	3.323083e-56	-8.615850e-47
Msa0151690	Msa0420540	0.804229	2.387692e-49	-8.615850e-47
Msa0203160	Msa0420540	0.829661	4.542228e-55	-8.615850e-47
Msa0219190	Msa0420540	0.828681	7.852561e-55	-8.615850e-47
Msa0420540	Msa0426330	0.835121	2.017645e-56	-8.615850e-47
Msa0420540	Msa0430820	0.801055	1.078490e-48	-8.615850e-47
Msa0420540	Msa0436460	0.829293	5.582235e-55	-8.615850e-47
Msa0420540	Msa0436500	0.800619	1.323728e-48	-8.615850e-47
Msa0420540	Msa0453520	0.804822	1.796469e-49	-8.615850e-47
Msa0420540	Msa0619980	0.831713	1.427752e-55	-8.615850e-47
Msa0420540	Msa0620260	0.823454	1.373074e-53	-8.615850e-47
Msa0420540	Msa0706370	0.830193	3.370214e-55	-8.615850e-47
Msa0420540	Msa0810020	0.819969	8.782803e-53	-8.615850e-47
Msa0420540	Msa0850500	0.823166	1.603378e-53	-8.615850e-47
Msa0420540	Msa0859560	0.808482	3.030397e-50	-8.615850e-47
Msa0420540	Msa0862100	0.811601	6.453891e-51	-8.615850e-47
Msa0420540	Msa0870620	0.804568	2.029813e-49	-8.615850e-47
Msa0420540	Msa0873190	0.805382	1.371353e-49	-8.615850e-47
Msa0420540	Msa0908170	0.801230	9.933884e-49	-8.615850e-47
Msa0420540	Msa0937550	0.800052	1.727087e-48	-8.615850e-47
Msa0420540	Msa0993530	0.800458	1.427433e-48	-8.615850e-47
Msa0420540	Msa1007350	0.801344	9.412203e-49	-8.615850e-47
Msa0420540	Msa1041530	0.801352	9.377447e-49	-8.615850e-47
Msa0420540	Msa1049010	0.824055	9.927548e-54	-8.615850e-47
Msa0420540	Msa1073350	0.807788	4.259144e-50	-8.615850e-47
Msa0420540	Msa1116930	0.805061	1.600697e-49	-8.615850e-47
Msa0420540	Msa1160400	0.804262	2.350868e-49	-8.615850e-47
Msa0420540	Msa1254190	0.810218	1.285644e-50	-8.615850e-47
Msa0420540	Msa1379990	0.849283	3.572679e-60	-8.615850e-47
Msa0420540	Msa1420060	0.848888	4.600568e-60	-8.615850e-47
Msa0420540	Msa1429420	0.827085	1.900759e-54	-8.615850e-47
Msa0257680	Msa0420540	0.828323	9.583850e-55	-8.615850e-47
Msa0277530	Msa0420540	0.816703	4.824229e-52	-8.615850e-47
Msa0298240	Msa0420540	0.804372	2.229442e-49	-8.615850e-47
Msa0335270	Msa0420540	0.831337	1.767644e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0420540	MtrunA17_Chr3g0120131	96.024	327	13	0	1	327	153	479	0.0	664
Msa0420540	MtrunA17_Chr3g0119721	96.330	327	12	0	1	327	15	341	0.0	659
Msa0420540	MtrunA17_Chr3g0131051	64.526	327	116	0	1	327	162	488	2.27e-159	454
Msa0420540	MtrunA17_Chr1g0179651	59.756	328	131	1	1	327	9	336	1.19e-150	426
Msa0420540	MtrunA17_Chr7g0265451	57.187	327	140	0	1	327	186	512	7.43e-145	418
Msa0420540	MtrunA17_Chr7g0265461	57.798	327	138	0	1	327	69	395	1.59e-143	410
Msa0420540	MtrunA17_Chr3g0137491	58.788	330	133	2	1	327	59	388	2.11e-143	410
Msa0420540	MtrunA17_Chr4g0064471	52.853	333	151	2	1	327	135	467	6.16e-126	369
Msa0420540	MtrunA17_Chr4g0064411	51.807	332	154	4	1	327	129	459	5.82e-118	348
Msa0420540	MtrunA17_Chr4g0064461	49.550	333	162	2	1	327	130	462	5.86e-114	338
Msa0420540	MtrunA17_Chr4g0055991	46.407	334	172	4	1	327	200	533	3.63e-103	312
Msa0420540	MtrunA17_Chr7g0265381	45.455	330	173	3	1	326	44	370	1.99e-101	303
Msa0420540	MtrunA17_Chr1g0197381	45.045	333	168	5	1	327	222	545	1.59e-100	306
Msa0420540	MtrunA17_Chr1g0146181	46.970	330	168	3	1	326	257	583	2.03e-100	307
Msa0420540	MtrunA17_Chr3g0140131	45.758	330	172	3	1	326	264	590	2.27e-99	305
Msa0420540	MtrunA17_Chr8g0390121	43.505	331	179	3	1	326	279	606	1.45e-97	300
Msa0420540	MtrunA17_Chr3g0140141	43.333	330	180	3	1	326	222	548	5.78e-94	289
Msa0420540	MtrunA17_Chr5g0411991	36.364	330	194	6	1	324	90	409	1.55e-68	219
Msa0420540	MtrunA17_Chr7g0253441	35.608	337	190	10	1	325	155	476	1.98e-53	182
Msa0420540	MtrunA17_Chr8g0385671	26.214	309	204	6	32	321	81	384	1.58e-30	119
Msa0420540	MtrunA17_Chr8g0385651	26.282	312	200	7	32	321	81	384	2.26e-29	116
Msa0420540	MtrunA17_Chr5g0421571	36.041	197	113	5	1	194	143	329	3.43e-29	114
Msa0420540	MtrunA17_Chr4g0028201	27.119	354	209	13	3	321	105	444	1.10e-25	106
Msa0420540	MtrunA17_Chr2g0320251	26.781	351	218	15	1	321	85	426	1.39e-24	103
Msa0420540	MtrunA17_Chr3g0092341	28.990	307	186	12	34	317	169	466	4.56e-21	93.6
Msa0420540	MtrunA17_Chr8g0377331	25.658	304	207	8	27	317	97	394	1.78e-19	88.6
Msa0420540	MtrunA17_Chr6g0460631	26.403	303	196	10	35	321	174	465	1.38e-18	86.3
Msa0420540	MtrunA17_Chr4g0043801	24.585	301	190	11	42	322	158	441	4.50e-18	84.7
Msa0420540	MtrunA17_Chr3g0122631	24.573	293	198	10	44	321	116	400	8.96e-16	77.8
Msa0420540	MtrunA17_Chr7g0254391	26.510	298	184	13	44	321	188	470	2.19e-14	73.6
Msa0420540	MtrunA17_Chr4g0039811	23.509	285	190	10	41	309	176	448	1.65e-13	71.2
Msa0420540	MtrunA17_Chr1g0200871	25.503	298	183	10	44	306	139	432	1.73e-12	67.8
Msa0420540	MtrunA17_Chr5g0436111	30.464	151	87	4	1	151	49	181	2.34e-12	66.6
Msa0420540	MtrunA17_Chr1g0159421	26.335	281	178	12	36	299	118	386	9.48e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0420540	AT3G07620.1	68.598	328	102	1	1	327	128	455	1.09e-173	489
Msa0420540	AT5G03795.1	58.104	327	137	0	1	327	186	512	3.24e-143	414
Msa0420540	AT5G25310.1	53.172	331	150	3	1	327	147	476	5.05e-132	385
Msa0420540	AT5G11130.2	53.191	329	152	2	1	327	1	329	3.01e-129	372
Msa0420540	AT5G11130.1	53.191	329	152	2	1	327	145	473	3.08e-128	375
Msa0420540	AT3G42180.4	51.488	336	154	2	1	327	1	336	1.31e-119	348
Msa0420540	AT5G33290.1	51.190	336	155	2	1	327	160	495	7.78e-119	352
Msa0420540	AT3G42180.1	51.488	336	154	2	1	327	130	465	1.59e-118	350
Msa0420540	AT5G20260.1	50.909	330	159	3	1	327	1	330	4.98e-117	341
Msa0420540	AT5G20260.3	50.909	330	159	3	1	327	28	357	7.66e-117	342
Msa0420540	AT5G20260.2	50.909	330	159	3	1	327	133	462	3.15e-116	344
Msa0420540	AT4G16745.1	48.503	334	165	4	1	327	196	529	1.09e-110	332
Msa0420540	AT4G32790.1	45.015	331	174	4	1	326	263	590	5.71e-100	306
Msa0420540	AT4G32790.3	45.015	331	174	4	1	326	263	590	5.71e-100	306
Msa0420540	AT4G32790.2	45.015	331	174	4	1	326	263	590	5.71e-100	306
Msa0420540	AT4G16745.2	46.729	321	164	4	1	314	196	516	1.08e-99	305
Msa0420540	AT5G19670.1	43.202	331	180	3	1	326	277	604	5.11e-99	304
Msa0420540	AT5G19670.2	43.202	331	180	3	1	326	277	604	5.11e-99	304
Msa0420540	AT5G37000.1	41.994	331	183	4	1	326	222	548	3.10e-91	283
Msa0420540	AT5G25820.1	44.311	334	174	7	1	326	320	649	1.03e-90	284
Msa0420540	AT5G11610.1	39.577	331	191	6	1	326	216	542	4.73e-86	269
Msa0420540	AT4G38040.1	35.758	330	196	6	1	324	100	419	7.11e-64	208
Msa0420540	AT4G38040.2	34.314	306	185	6	1	300	100	395	5.24e-52	177
Msa0420540	AT5G11610.2	35.865	237	144	5	1	233	216	448	6.36e-50	172
Msa0420540	AT1G27440.1	26.861	309	202	7	32	321	77	380	1.16e-30	120
Msa0420540	AT5G61840.1	25.073	343	223	9	5	321	49	383	4.80e-28	113
Msa0420540	AT2G28110.1	27.243	301	191	9	44	321	138	433	8.58e-24	101
Msa0420540	AT5G11610.3	36.842	114	70	1	1	112	216	329	2.50e-22	96.3
Msa0420540	AT1G67410.1	25.510	294	201	8	38	317	113	402	8.32e-21	92.8
Msa0420540	AT5G22940.1	25.157	318	201	11	36	327	146	452	1.53e-20	92.4
Msa0420540	AT5G22940.2	25.157	318	201	11	36	327	175	481	1.74e-20	92.4
Msa0420540	AT1G74680.1	27.491	291	193	8	39	317	144	428	2.70e-19	88.6
Msa0420540	AT3G45400.1	26.897	290	193	8	44	321	154	436	5.99e-18	84.7
Msa0420540	AT2G35100.1	23.022	278	195	8	42	307	125	395	1.13e-17	84.0
Msa0420540	AT3G03650.1	27.000	300	191	11	39	322	188	475	1.16e-16	80.9
Msa0420540	AT5G16890.1	27.273	231	145	9	96	309	230	454	6.36e-16	79.0
Msa0420540	AT1G34270.1	29.661	236	136	10	96	306	195	425	1.48e-13	71.6
Msa0420540	AT5G44930.2	27.232	224	135	10	95	302	175	386	9.86e-13	68.9
Msa0420540	AT5G44930.1	27.232	224	135	10	95	302	175	386	9.86e-13	68.9

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAATATTTATCAACTTAT+TGG	0.144366	3_2:+69124183	Msa0420540:CDS
CCTATTACCAAATTGATTTC+AGG	0.157605	3_2:-69124626	None:intergenic
TAAATAGCTTCTCCATTAAT+TGG	0.196021	3_2:-69124087	None:intergenic
CCTGAAATCAATTTGGTAAT+AGG	0.200221	3_2:+69124626	Msa0420540:CDS
AACATGGAACAGAACAATTT+TGG	0.213830	3_2:+69124679	Msa0420540:CDS
TATCACACAAATATGCTTAT+TGG	0.232545	3_2:+69124359	Msa0420540:CDS
AATACATGAAATTCTTAATC+TGG	0.238507	3_2:-69123914	None:intergenic
ATCATTTCCTGAAATCAATT+TGG	0.239355	3_2:+69124619	Msa0420540:CDS
TAAATTGCCTCAACAATTCT+TGG	0.244588	3_2:-69124875	None:intergenic
TTAAGAATTTCATGTATTAA+AGG	0.249830	3_2:+69123919	Msa0420540:five_prime_UTR
GGAAATGATGCATCTTTCTT+TGG	0.250368	3_2:-69124605	None:intergenic
TATTAGTGACAAAGCTGTTT+TGG	0.252682	3_2:+69124306	Msa0420540:CDS
ATATAGGATTTACCAATTAA+TGG	0.269857	3_2:+69124075	Msa0420540:exon
TATTGTTGTGATATTATAAT+AGG	0.275605	3_2:-69124911	None:intergenic
ATATGATTATTCATTCTATA+TGG	0.288339	3_2:+69125125	Msa0420540:CDS
TACTCATCTTCATTGTTTCA+TGG	0.291583	3_2:-69124814	None:intergenic
ACAGCTTTGTCACTAATAAC+TGG	0.291871	3_2:-69124301	None:intergenic
TCATGCTTTCTTGTCATGAT+TGG	0.298264	3_2:+69124407	Msa0420540:CDS
AATAGAGCATGACATGTAAA+AGG	0.325878	3_2:-69124017	None:intergenic
AAGGTTAAAACTCTTAAATA+TGG	0.328151	3_2:-69123998	None:intergenic
CATGCTTTCTTGTCATGATT+GGG	0.337722	3_2:+69124408	Msa0420540:CDS
AGAATCATAACAACACTATA+TGG	0.344592	3_2:-69124262	None:intergenic
AACAAAATTTCCTTAAGCTT+GGG	0.346625	3_2:-69125001	None:intergenic
TAGTGAAATTCCCAAGCTTA+AGG	0.365820	3_2:+69124991	Msa0420540:CDS
CAATCAAGAACATCACTAAA+AGG	0.369286	3_2:-69124941	None:intergenic
CAACAAAATTTCCTTAAGCT+TGG	0.385217	3_2:-69125002	None:intergenic
AAGTAGGCATGAGCTTCATT+TGG	0.398848	3_2:-69124235	None:intergenic
TTCACATACCATGTTGCCCT+TGG	0.411752	3_2:-69124521	None:intergenic
TGGAAAGCAATACATTGTTT+CGG	0.414984	3_2:+69124203	Msa0420540:CDS
GCTTATTGGAATAGAAGTTA+TGG	0.446862	3_2:+69124373	Msa0420540:CDS
TTATTCATTCTATATGGCTT+AGG	0.447096	3_2:+69125131	Msa0420540:CDS
TATCTTTGTTCTTCCAATGT+TGG	0.453246	3_2:-69124748	None:intergenic
TAAAATCTTTGTGTATGAAG+AGG	0.453499	3_2:+69124108	Msa0420540:CDS
ATACATGAAATTCTTAATCT+GGG	0.453869	3_2:-69123913	None:intergenic
AAAATCTTTGTGTATGAAGA+GGG	0.454200	3_2:+69124109	Msa0420540:CDS
CATGACAAGAAAGCATGAAA+TGG	0.462671	3_2:-69124402	None:intergenic
CTTGCCACTTCCCACCCACT+TGG	0.464582	3_2:-69124851	None:intergenic
GGTATGATAGCATATTGAAT+AGG	0.479856	3_2:-69123892	None:intergenic
GGAGAAACAACAGGTTTACT+TGG	0.484842	3_2:+69124647	Msa0420540:CDS
TTCATTCTATATGGCTTAGG+AGG	0.491295	3_2:+69125134	Msa0420540:CDS
AAAATTGTTCTGTTCCATGT+TGG	0.499948	3_2:-69124677	None:intergenic
ATTGCAAGAGGGTGTTAAGC+AGG	0.507234	3_2:+69125051	Msa0420540:CDS
TTGGTAATAGGAGAAACAAC+AGG	0.510462	3_2:+69124638	Msa0420540:CDS
TTGTCCAAGTGGGTGGGAAG+TGG	0.510845	3_2:+69124847	Msa0420540:CDS
ATTTCATGTATTAAAGGTGC+GGG	0.514312	3_2:+69123925	Msa0420540:five_prime_UTR
ATTGTATTTGTCCAAGTGGG+TGG	0.518103	3_2:+69124840	Msa0420540:CDS
TGTCAGATTAAAGTAGTCAA+AGG	0.523127	3_2:-69123839	None:intergenic
AACACTATATGGAAGAAAGT+AGG	0.533737	3_2:-69124251	None:intergenic
TTCCAATGTTGGAAAAGCAC+CGG	0.537930	3_2:-69124737	None:intergenic
TTCTTTGCGGGACAAATGCA+TGG	0.555063	3_2:+69124704	Msa0420540:CDS
GAAATATATGAGATTGCAAG+AGG	0.555780	3_2:+69125039	Msa0420540:CDS
TACTTGGTGGCTATCCAACA+TGG	0.562509	3_2:+69124663	Msa0420540:CDS
GAAACAACAGGTTTACTTGG+TGG	0.562533	3_2:+69124650	Msa0420540:CDS
CAGCTTTGTCACTAATAACT+GGG	0.562964	3_2:-69124300	None:intergenic
GCGGGTTGATATTGATGTTG+TGG	0.575639	3_2:+69123943	Msa0420540:five_prime_UTR
TTGTATTTGTCCAAGTGGGT+GGG	0.588230	3_2:+69124841	Msa0420540:CDS
CATAGGGACCAAGGGCAACA+TGG	0.588439	3_2:+69124513	Msa0420540:intron
AATATTGTATTTGTCCAAGT+GGG	0.593695	3_2:+69124837	Msa0420540:CDS
GGAAATTGTATCTACATATG+TGG	0.605814	3_2:+69123964	Msa0420540:five_prime_UTR
AATGCATGGTAGAATTAGAC+CGG	0.608542	3_2:+69124718	Msa0420540:CDS
GGCAAGTCCAAGAATTGTTG+AGG	0.611209	3_2:+69124868	Msa0420540:CDS
AAATATTGTATTTGTCCAAG+TGG	0.615905	3_2:+69124836	Msa0420540:CDS
AATTTCATGTATTAAAGGTG+CGG	0.624404	3_2:+69123924	Msa0420540:five_prime_UTR
AAGGGCAACATGGTATGTGA+AGG	0.631000	3_2:+69124523	Msa0420540:CDS
AAATATATGAGATTGCAAGA+GGG	0.671995	3_2:+69125040	Msa0420540:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTATATTTCATGAAAA+TGG	+	chr3_2:69124483-69124502	Msa0420540:intron	10.0%
!!!	ATTTTTATATTTCATGAAAA+TGG	+	chr3_2:69124483-69124502	Msa0420540:intron	10.0%
!!	TTAAGAATTTCATGTATTAA+AGG	+	chr3_2:69123919-69123938	Msa0420540:five_prime_UTR	15.0%
!!!	TTTTTACATAATGATGATAT+AGG	+	chr3_2:69124059-69124078	Msa0420540:five_prime_UTR	15.0%
!!!	ATTGAATATATATTTTTGCA+AGG	-	chr3_2:69124160-69124179	None:intergenic	15.0%
!!	TTGCAAAAATATATATTCAA+TGG	+	chr3_2:69124159-69124178	Msa0420540:CDS	15.0%
!!	AAAAATATATATTCAATGGA+GGG	+	chr3_2:69124163-69124182	Msa0420540:CDS	15.0%
!!	TATTGTTGTGATATTATAAT+AGG	-	chr3_2:69124914-69124933	None:intergenic	15.0%
!!	ATATGATTATTCATTCTATA+TGG	+	chr3_2:69125125-69125144	Msa0420540:CDS	15.0%
!!	TTAAGAATTTCATGTATTAA+AGG	+	chr3_2:69123919-69123938	Msa0420540:five_prime_UTR	15.0%
!!!	TTTTTACATAATGATGATAT+AGG	+	chr3_2:69124059-69124078	Msa0420540:five_prime_UTR	15.0%
!!!	ATTGAATATATATTTTTGCA+AGG	-	chr3_2:69124160-69124179	None:intergenic	15.0%
!!	TTGCAAAAATATATATTCAA+TGG	+	chr3_2:69124159-69124178	Msa0420540:CDS	15.0%
!!	AAAAATATATATTCAATGGA+GGG	+	chr3_2:69124163-69124182	Msa0420540:CDS	15.0%
!!	TATTGTTGTGATATTATAAT+AGG	-	chr3_2:69124914-69124933	None:intergenic	15.0%
!!	ATATGATTATTCATTCTATA+TGG	+	chr3_2:69125125-69125144	Msa0420540:CDS	15.0%
!!!	AATCATAGTTTTGATGAAAT+TGG	+	chr3_2:69123867-69123886	Msa0420540:five_prime_UTR	20.0%
!!	ATACATGAAATTCTTAATCT+GGG	-	chr3_2:69123916-69123935	None:intergenic	20.0%
!!	AATACATGAAATTCTTAATC+TGG	-	chr3_2:69123917-69123936	None:intergenic	20.0%
!!	AAGGTTAAAACTCTTAAATA+TGG	-	chr3_2:69124001-69124020	None:intergenic	20.0%
!!	ATATAGGATTTACCAATTAA+TGG	+	chr3_2:69124075-69124094	Msa0420540:exon	20.0%
!!	CAAAAATATATATTCAATGG+AGG	+	chr3_2:69124162-69124181	Msa0420540:CDS	20.0%
!!!	TGAAATACATCATATCTTTT+AGG	-	chr3_2:69125106-69125125	None:intergenic	20.0%
!!!	AATCATAGTTTTGATGAAAT+TGG	+	chr3_2:69123867-69123886	Msa0420540:five_prime_UTR	20.0%
!!	ATACATGAAATTCTTAATCT+GGG	-	chr3_2:69123916-69123935	None:intergenic	20.0%
!!	AATACATGAAATTCTTAATC+TGG	-	chr3_2:69123917-69123936	None:intergenic	20.0%
!!	AAGGTTAAAACTCTTAAATA+TGG	-	chr3_2:69124001-69124020	None:intergenic	20.0%
!!	ATATAGGATTTACCAATTAA+TGG	+	chr3_2:69124075-69124094	Msa0420540:exon	20.0%
!!	CAAAAATATATATTCAATGG+AGG	+	chr3_2:69124162-69124181	Msa0420540:CDS	20.0%
!!!	TGAAATACATCATATCTTTT+AGG	-	chr3_2:69125106-69125125	None:intergenic	20.0%
!	AATTTCATGTATTAAAGGTG+CGG	+	chr3_2:69123924-69123943	Msa0420540:five_prime_UTR	25.0%
!	TAAATAGCTTCTCCATTAAT+TGG	-	chr3_2:69124090-69124109	None:intergenic	25.0%
!	TAAAATCTTTGTGTATGAAG+AGG	+	chr3_2:69124108-69124127	Msa0420540:CDS	25.0%
!	AAAATCTTTGTGTATGAAGA+GGG	+	chr3_2:69124109-69124128	Msa0420540:CDS	25.0%
!	GGGAATATTTATCAACTTAT+TGG	+	chr3_2:69124183-69124202	Msa0420540:CDS	25.0%
!	AGAATCATAACAACACTATA+TGG	-	chr3_2:69124265-69124284	None:intergenic	25.0%
!	TATCACACAAATATGCTTAT+TGG	+	chr3_2:69124359-69124378	Msa0420540:CDS	25.0%
!	ATCATTTCCTGAAATCAATT+TGG	+	chr3_2:69124619-69124638	Msa0420540:CDS	25.0%
!!!	AACAATTTTGGTATTCTTTG+CGG	+	chr3_2:69124691-69124710	Msa0420540:CDS	25.0%
!!	TCATGGTATGAAATATTTTC+TGG	-	chr3_2:69124800-69124819	None:intergenic	25.0%
!	AAATATTGTATTTGTCCAAG+TGG	+	chr3_2:69124836-69124855	Msa0420540:CDS	25.0%
!	AATATTGTATTTGTCCAAGT+GGG	+	chr3_2:69124837-69124856	Msa0420540:CDS	25.0%
!!	TTTTAGTGATGTTCTTGATT+GGG	+	chr3_2:69124943-69124962	Msa0420540:CDS	25.0%
!	AACAAAATTTCCTTAAGCTT+GGG	-	chr3_2:69125004-69125023	None:intergenic	25.0%
!!	AAGCTTAAGGAAATTTTGTT+GGG	+	chr3_2:69125004-69125023	Msa0420540:CDS	25.0%
!	AAATATATGAGATTGCAAGA+GGG	+	chr3_2:69125040-69125059	Msa0420540:CDS	25.0%
!!	AATACATCATATCTTTTAGG+AGG	-	chr3_2:69125103-69125122	None:intergenic	25.0%
!	TTATTCATTCTATATGGCTT+AGG	+	chr3_2:69125131-69125150	Msa0420540:CDS	25.0%
!	AATTTCATGTATTAAAGGTG+CGG	+	chr3_2:69123924-69123943	Msa0420540:five_prime_UTR	25.0%
!	TAAATAGCTTCTCCATTAAT+TGG	-	chr3_2:69124090-69124109	None:intergenic	25.0%
!	TAAAATCTTTGTGTATGAAG+AGG	+	chr3_2:69124108-69124127	Msa0420540:CDS	25.0%
!	AAAATCTTTGTGTATGAAGA+GGG	+	chr3_2:69124109-69124128	Msa0420540:CDS	25.0%
!	GGGAATATTTATCAACTTAT+TGG	+	chr3_2:69124183-69124202	Msa0420540:CDS	25.0%
!	AGAATCATAACAACACTATA+TGG	-	chr3_2:69124265-69124284	None:intergenic	25.0%
!	TATCACACAAATATGCTTAT+TGG	+	chr3_2:69124359-69124378	Msa0420540:CDS	25.0%
!	ATCATTTCCTGAAATCAATT+TGG	+	chr3_2:69124619-69124638	Msa0420540:CDS	25.0%
!!!	AACAATTTTGGTATTCTTTG+CGG	+	chr3_2:69124691-69124710	Msa0420540:CDS	25.0%
!!	TCATGGTATGAAATATTTTC+TGG	-	chr3_2:69124800-69124819	None:intergenic	25.0%
!	AAATATTGTATTTGTCCAAG+TGG	+	chr3_2:69124836-69124855	Msa0420540:CDS	25.0%
!	AATATTGTATTTGTCCAAGT+GGG	+	chr3_2:69124837-69124856	Msa0420540:CDS	25.0%
!!	TTTTAGTGATGTTCTTGATT+GGG	+	chr3_2:69124943-69124962	Msa0420540:CDS	25.0%
!	AACAAAATTTCCTTAAGCTT+GGG	-	chr3_2:69125004-69125023	None:intergenic	25.0%
!!	AAGCTTAAGGAAATTTTGTT+GGG	+	chr3_2:69125004-69125023	Msa0420540:CDS	25.0%
!	AAATATATGAGATTGCAAGA+GGG	+	chr3_2:69125040-69125059	Msa0420540:CDS	25.0%
!!	AATACATCATATCTTTTAGG+AGG	-	chr3_2:69125103-69125122	None:intergenic	25.0%
!	TTATTCATTCTATATGGCTT+AGG	+	chr3_2:69125131-69125150	Msa0420540:CDS	25.0%
	TGTCAGATTAAAGTAGTCAA+AGG	-	chr3_2:69123842-69123861	None:intergenic	30.0%
	GGTATGATAGCATATTGAAT+AGG	-	chr3_2:69123895-69123914	None:intergenic	30.0%
!	ATTTCATGTATTAAAGGTGC+GGG	+	chr3_2:69123925-69123944	Msa0420540:five_prime_UTR	30.0%
	GGAAATTGTATCTACATATG+TGG	+	chr3_2:69123964-69123983	Msa0420540:five_prime_UTR	30.0%
	AATAGAGCATGACATGTAAA+AGG	-	chr3_2:69124020-69124039	None:intergenic	30.0%
	TGGAAAGCAATACATTGTTT+CGG	+	chr3_2:69124203-69124222	Msa0420540:CDS	30.0%
	AACACTATATGGAAGAAAGT+AGG	-	chr3_2:69124254-69124273	None:intergenic	30.0%
!	TATTAGTGACAAAGCTGTTT+TGG	+	chr3_2:69124306-69124325	Msa0420540:CDS	30.0%
!!	ATTAGTGACAAAGCTGTTTT+GGG	+	chr3_2:69124307-69124326	Msa0420540:CDS	30.0%
	GCTTATTGGAATAGAAGTTA+TGG	+	chr3_2:69124373-69124392	Msa0420540:CDS	30.0%
	CATACTCGCACTATAATTAT+CGG	-	chr3_2:69124455-69124474	None:intergenic	30.0%
!!!	ATGAAAATGGTTTTGTGCAT+AGG	+	chr3_2:69124496-69124515	Msa0420540:intron	30.0%
!!!	TGAAAATGGTTTTGTGCATA+GGG	+	chr3_2:69124497-69124516	Msa0420540:intron	30.0%
!	CCTATTACCAAATTGATTTC+AGG	-	chr3_2:69124629-69124648	None:intergenic	30.0%
!	CCTGAAATCAATTTGGTAAT+AGG	+	chr3_2:69124626-69124645	Msa0420540:CDS	30.0%
	AAAATTGTTCTGTTCCATGT+TGG	-	chr3_2:69124680-69124699	None:intergenic	30.0%
!	AACATGGAACAGAACAATTT+TGG	+	chr3_2:69124679-69124698	Msa0420540:CDS	30.0%
!!	ACAATTTTGGTATTCTTTGC+GGG	+	chr3_2:69124692-69124711	Msa0420540:CDS	30.0%
	TATCTTTGTTCTTCCAATGT+TGG	-	chr3_2:69124751-69124770	None:intergenic	30.0%
	TACTCATCTTCATTGTTTCA+TGG	-	chr3_2:69124817-69124836	None:intergenic	30.0%
	TAAATTGCCTCAACAATTCT+TGG	-	chr3_2:69124878-69124897	None:intergenic	30.0%
	CAATCAAGAACATCACTAAA+AGG	-	chr3_2:69124944-69124963	None:intergenic	30.0%
!	CTTTTAGTGATGTTCTTGAT+TGG	+	chr3_2:69124942-69124961	Msa0420540:CDS	30.0%
	CAACAAAATTTCCTTAAGCT+TGG	-	chr3_2:69125005-69125024	None:intergenic	30.0%
!	CAAGCTTAAGGAAATTTTGT+TGG	+	chr3_2:69125003-69125022	Msa0420540:CDS	30.0%
	GAAATATATGAGATTGCAAG+AGG	+	chr3_2:69125039-69125058	Msa0420540:CDS	30.0%
	TGTCAGATTAAAGTAGTCAA+AGG	-	chr3_2:69123842-69123861	None:intergenic	30.0%
	GGTATGATAGCATATTGAAT+AGG	-	chr3_2:69123895-69123914	None:intergenic	30.0%
!	ATTTCATGTATTAAAGGTGC+GGG	+	chr3_2:69123925-69123944	Msa0420540:five_prime_UTR	30.0%
	GGAAATTGTATCTACATATG+TGG	+	chr3_2:69123964-69123983	Msa0420540:five_prime_UTR	30.0%
	AATAGAGCATGACATGTAAA+AGG	-	chr3_2:69124020-69124039	None:intergenic	30.0%
	TGGAAAGCAATACATTGTTT+CGG	+	chr3_2:69124203-69124222	Msa0420540:CDS	30.0%
	AACACTATATGGAAGAAAGT+AGG	-	chr3_2:69124254-69124273	None:intergenic	30.0%
!	TATTAGTGACAAAGCTGTTT+TGG	+	chr3_2:69124306-69124325	Msa0420540:CDS	30.0%
!!	ATTAGTGACAAAGCTGTTTT+GGG	+	chr3_2:69124307-69124326	Msa0420540:CDS	30.0%
	GCTTATTGGAATAGAAGTTA+TGG	+	chr3_2:69124373-69124392	Msa0420540:CDS	30.0%
	CATACTCGCACTATAATTAT+CGG	-	chr3_2:69124455-69124474	None:intergenic	30.0%
!!!	ATGAAAATGGTTTTGTGCAT+AGG	+	chr3_2:69124496-69124515	Msa0420540:intron	30.0%
!!!	TGAAAATGGTTTTGTGCATA+GGG	+	chr3_2:69124497-69124516	Msa0420540:intron	30.0%
!	CCTATTACCAAATTGATTTC+AGG	-	chr3_2:69124629-69124648	None:intergenic	30.0%
!	CCTGAAATCAATTTGGTAAT+AGG	+	chr3_2:69124626-69124645	Msa0420540:CDS	30.0%
	AAAATTGTTCTGTTCCATGT+TGG	-	chr3_2:69124680-69124699	None:intergenic	30.0%
!	AACATGGAACAGAACAATTT+TGG	+	chr3_2:69124679-69124698	Msa0420540:CDS	30.0%
!!	ACAATTTTGGTATTCTTTGC+GGG	+	chr3_2:69124692-69124711	Msa0420540:CDS	30.0%
	TATCTTTGTTCTTCCAATGT+TGG	-	chr3_2:69124751-69124770	None:intergenic	30.0%
	TACTCATCTTCATTGTTTCA+TGG	-	chr3_2:69124817-69124836	None:intergenic	30.0%
	TAAATTGCCTCAACAATTCT+TGG	-	chr3_2:69124878-69124897	None:intergenic	30.0%
	CAATCAAGAACATCACTAAA+AGG	-	chr3_2:69124944-69124963	None:intergenic	30.0%
!	CTTTTAGTGATGTTCTTGAT+TGG	+	chr3_2:69124942-69124961	Msa0420540:CDS	30.0%
	CAACAAAATTTCCTTAAGCT+TGG	-	chr3_2:69125005-69125024	None:intergenic	30.0%
!	CAAGCTTAAGGAAATTTTGT+TGG	+	chr3_2:69125003-69125022	Msa0420540:CDS	30.0%
	GAAATATATGAGATTGCAAG+AGG	+	chr3_2:69125039-69125058	Msa0420540:CDS	30.0%
!!	GAACCTCCTCTTTTTCATTA+TGG	+	chr3_2:69124133-69124152	Msa0420540:CDS	35.0%
	CAAGGACCATAATGAAAAAG+AGG	-	chr3_2:69124142-69124161	None:intergenic	35.0%
!	CAGCTTTGTCACTAATAACT+GGG	-	chr3_2:69124303-69124322	None:intergenic	35.0%
!	ACAGCTTTGTCACTAATAAC+TGG	-	chr3_2:69124304-69124323	None:intergenic	35.0%
!	CATGACAAGAAAGCATGAAA+TGG	-	chr3_2:69124405-69124424	None:intergenic	35.0%
	TCATGCTTTCTTGTCATGAT+TGG	+	chr3_2:69124407-69124426	Msa0420540:CDS	35.0%
	CATGCTTTCTTGTCATGATT+GGG	+	chr3_2:69124408-69124427	Msa0420540:CDS	35.0%
	GGAAATGATGCATCTTTCTT+TGG	-	chr3_2:69124608-69124627	None:intergenic	35.0%
!	TTGGTAATAGGAGAAACAAC+AGG	+	chr3_2:69124638-69124657	Msa0420540:CDS	35.0%
	AATGCATGGTAGAATTAGAC+CGG	+	chr3_2:69124718-69124737	Msa0420540:CDS	35.0%
	TAGTGAAATTCCCAAGCTTA+AGG	+	chr3_2:69124991-69125010	Msa0420540:CDS	35.0%
!	AATTTTGTTGGGTATCTCTG+AGG	+	chr3_2:69125015-69125034	Msa0420540:CDS	35.0%
	TTCATTCTATATGGCTTAGG+AGG	+	chr3_2:69125134-69125153	Msa0420540:CDS	35.0%
!!	GAACCTCCTCTTTTTCATTA+TGG	+	chr3_2:69124133-69124152	Msa0420540:CDS	35.0%
	CAAGGACCATAATGAAAAAG+AGG	-	chr3_2:69124142-69124161	None:intergenic	35.0%
!	CAGCTTTGTCACTAATAACT+GGG	-	chr3_2:69124303-69124322	None:intergenic	35.0%
!	ACAGCTTTGTCACTAATAAC+TGG	-	chr3_2:69124304-69124323	None:intergenic	35.0%
!	CATGACAAGAAAGCATGAAA+TGG	-	chr3_2:69124405-69124424	None:intergenic	35.0%
	TCATGCTTTCTTGTCATGAT+TGG	+	chr3_2:69124407-69124426	Msa0420540:CDS	35.0%
	CATGCTTTCTTGTCATGATT+GGG	+	chr3_2:69124408-69124427	Msa0420540:CDS	35.0%
	GGAAATGATGCATCTTTCTT+TGG	-	chr3_2:69124608-69124627	None:intergenic	35.0%
!	TTGGTAATAGGAGAAACAAC+AGG	+	chr3_2:69124638-69124657	Msa0420540:CDS	35.0%
	AATGCATGGTAGAATTAGAC+CGG	+	chr3_2:69124718-69124737	Msa0420540:CDS	35.0%
	TAGTGAAATTCCCAAGCTTA+AGG	+	chr3_2:69124991-69125010	Msa0420540:CDS	35.0%
!	AATTTTGTTGGGTATCTCTG+AGG	+	chr3_2:69125015-69125034	Msa0420540:CDS	35.0%
	TTCATTCTATATGGCTTAGG+AGG	+	chr3_2:69125134-69125153	Msa0420540:CDS	35.0%
	GGACCATAATGAAAAAGAGG+AGG	-	chr3_2:69124139-69124158	None:intergenic	40.0%
	AAGTAGGCATGAGCTTCATT+TGG	-	chr3_2:69124238-69124257	None:intergenic	40.0%
!!!	GCTGTTTTGGGAAGAACTAT+TGG	+	chr3_2:69124319-69124338	Msa0420540:CDS	40.0%
	GGAGAAACAACAGGTTTACT+TGG	+	chr3_2:69124647-69124666	Msa0420540:CDS	40.0%
	GAAACAACAGGTTTACTTGG+TGG	+	chr3_2:69124650-69124669	Msa0420540:CDS	40.0%
!	TTCCAATGTTGGAAAAGCAC+CGG	-	chr3_2:69124740-69124759	None:intergenic	40.0%
	ATTGTATTTGTCCAAGTGGG+TGG	+	chr3_2:69124840-69124859	Msa0420540:CDS	40.0%
	TTGTATTTGTCCAAGTGGGT+GGG	+	chr3_2:69124841-69124860	Msa0420540:CDS	40.0%
	GGACCATAATGAAAAAGAGG+AGG	-	chr3_2:69124139-69124158	None:intergenic	40.0%
	AAGTAGGCATGAGCTTCATT+TGG	-	chr3_2:69124238-69124257	None:intergenic	40.0%
!!!	GCTGTTTTGGGAAGAACTAT+TGG	+	chr3_2:69124319-69124338	Msa0420540:CDS	40.0%
	GGAGAAACAACAGGTTTACT+TGG	+	chr3_2:69124647-69124666	Msa0420540:CDS	40.0%
	GAAACAACAGGTTTACTTGG+TGG	+	chr3_2:69124650-69124669	Msa0420540:CDS	40.0%
!	TTCCAATGTTGGAAAAGCAC+CGG	-	chr3_2:69124740-69124759	None:intergenic	40.0%
	ATTGTATTTGTCCAAGTGGG+TGG	+	chr3_2:69124840-69124859	Msa0420540:CDS	40.0%
	TTGTATTTGTCCAAGTGGGT+GGG	+	chr3_2:69124841-69124860	Msa0420540:CDS	40.0%
!!	GCGGGTTGATATTGATGTTG+TGG	+	chr3_2:69123943-69123962	Msa0420540:five_prime_UTR	45.0%
!	GTTTTGTGCATAGGGACCAA+GGG	+	chr3_2:69124505-69124524	Msa0420540:intron	45.0%
	TTCACATACCATGTTGCCCT+TGG	-	chr3_2:69124524-69124543	None:intergenic	45.0%
	AAGGGCAACATGGTATGTGA+AGG	+	chr3_2:69124523-69124542	Msa0420540:CDS	45.0%
!	TACTTGGTGGCTATCCAACA+TGG	+	chr3_2:69124663-69124682	Msa0420540:CDS	45.0%
	TTCTTTGCGGGACAAATGCA+TGG	+	chr3_2:69124704-69124723	Msa0420540:CDS	45.0%
	GGCAAGTCCAAGAATTGTTG+AGG	+	chr3_2:69124868-69124887	Msa0420540:CDS	45.0%
!!	ATTGCAAGAGGGTGTTAAGC+AGG	+	chr3_2:69125051-69125070	Msa0420540:CDS	45.0%
!!	GCGGGTTGATATTGATGTTG+TGG	+	chr3_2:69123943-69123962	Msa0420540:five_prime_UTR	45.0%
!	GTTTTGTGCATAGGGACCAA+GGG	+	chr3_2:69124505-69124524	Msa0420540:intron	45.0%
	TTCACATACCATGTTGCCCT+TGG	-	chr3_2:69124524-69124543	None:intergenic	45.0%
	AAGGGCAACATGGTATGTGA+AGG	+	chr3_2:69124523-69124542	Msa0420540:CDS	45.0%
!	TACTTGGTGGCTATCCAACA+TGG	+	chr3_2:69124663-69124682	Msa0420540:CDS	45.0%
	TTCTTTGCGGGACAAATGCA+TGG	+	chr3_2:69124704-69124723	Msa0420540:CDS	45.0%
	GGCAAGTCCAAGAATTGTTG+AGG	+	chr3_2:69124868-69124887	Msa0420540:CDS	45.0%
!!	ATTGCAAGAGGGTGTTAAGC+AGG	+	chr3_2:69125051-69125070	Msa0420540:CDS	45.0%
!!	GGTTTTGTGCATAGGGACCA+AGG	+	chr3_2:69124504-69124523	Msa0420540:intron	50.0%
!	GACCGGTGCTTTTCCAACAT+TGG	+	chr3_2:69124735-69124754	Msa0420540:CDS	50.0%
!!	GGTTTTGTGCATAGGGACCA+AGG	+	chr3_2:69124504-69124523	Msa0420540:intron	50.0%
!	GACCGGTGCTTTTCCAACAT+TGG	+	chr3_2:69124735-69124754	Msa0420540:CDS	50.0%
	CATAGGGACCAAGGGCAACA+TGG	+	chr3_2:69124513-69124532	Msa0420540:intron	55.0%
	TTGTCCAAGTGGGTGGGAAG+TGG	+	chr3_2:69124847-69124866	Msa0420540:CDS	55.0%
	CATAGGGACCAAGGGCAACA+TGG	+	chr3_2:69124513-69124532	Msa0420540:intron	55.0%
	TTGTCCAAGTGGGTGGGAAG+TGG	+	chr3_2:69124847-69124866	Msa0420540:CDS	55.0%
!	CTTGCCACTTCCCACCCACT+TGG	-	chr3_2:69124854-69124873	None:intergenic	60.0%
!	CTTGCCACTTCCCACCCACT+TGG	-	chr3_2:69124854-69124873	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	69123826	69125162	69123826	ID=Msa0420540;Name=Msa0420540
chr3_2	mRNA	69123826	69125162	69123826	ID=Msa0420540-mRNA-1;Parent=Msa0420540;Name=Msa0420540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=268\|1\|1\|1\|1\|1\|2\|0\|327
chr3_2	exon	69123826	69124429	69123826	ID=Msa0420540-mRNA-1:exon:16383;Parent=Msa0420540-mRNA-1
chr3_2	exon	69124518	69125162	69124518	ID=Msa0420540-mRNA-1:exon:16384;Parent=Msa0420540-mRNA-1
chr3_2	five_prime_UTR	69123826	69124093	69123826	ID=Msa0420540-mRNA-1:five_prime_utr;Parent=Msa0420540-mRNA-1
chr3_2	CDS	69124094	69124429	69124094	ID=Msa0420540-mRNA-1:cds;Parent=Msa0420540-mRNA-1
chr3_2	CDS	69124518	69125162	69124518	ID=Msa0420540-mRNA-1:cds;Parent=Msa0420540-mRNA-1

Gene Sequence

>Msa0420540

ATGGAGAAGCTATTTAAAATCTTTGTGTATGAAGAGGGAGAACCTCCTCTTTTTCATTATGGTCCTTGCAAAAATATATATTCAATGGAGGGAATATTTATCAACTTATTGGAAAGCAATACATTGTTTCGGACTCATAATCCAAATGAAGCTCATGCCTACTTTCTTCCATATAGTGTTGTTATGATTCTTGAGCATCTCTTTCACCCAGTTATTAGTGACAAAGCTGTTTTGGGAAGAACTATTGGTGATTATGTTCATATCATATCACACAAATATGCTTATTGGAATAGAAGTTATGGAGCTGACCATTTCATGCTTTCTTGTCATGATTGGGGACCAAGGGCAACATGGTATGTGAAGGAATTGTATTTCATTGCAATTCGAGTACTTTGCAATGCAAATATCTCAGAGCATTTCAATCCAAAGAAAGATGCATCATTTCCTGAAATCAATTTGGTAATAGGAGAAACAACAGGTTTACTTGGTGGCTATCCAACATGGAACAGAACAATTTTGGTATTCTTTGCGGGACAAATGCATGGTAGAATTAGACCGGTGCTTTTCCAACATTGGAAGAACAAAGATAAAGATGTGTTAGTTTATGAAAAACTTCCAGAAAATATTTCATACCATGAAACAATGAAGATGAGTAAATATTGTATTTGTCCAAGTGGGTGGGAAGTGGCAAGTCCAAGAATTGTTGAGGCAATTTATGCTGAATGTGTACCTATTATAATATCACAACAATATGTACTTCCTTTTAGTGATGTTCTTGATTGGGATTCTTTCTCTGTTCAAATTGAAGTTAGTGAAATTCCCAAGCTTAAGGAAATTTTGTTGGGTATCTCTGAGGAGAAATATATGAGATTGCAAGAGGGTGTTAAGCAGGTGCAAAGACATTTTGTAGTGAATAATCCTCCTAAAAGATATGATGTATTTCATATGATTATTCATTCTATATGGCTTAGGAGGTTGAAT

Protein sequence

>Msa0420540

MEKLFKIFVYEEGEPPLFHYGPCKNIYSMEGIFINLLESNTLFRTHNPNEAHAYFLPYSVVMILEHLFHPVISDKAVLGRTIGDYVHIISHKYAYWNRSYGADHFMLSCHDWGPRATWYVKELYFIAIRVLCNANISEHFNPKKDASFPEINLVIGETTGLLGGYPTWNRTILVFFAGQMHGRIRPVLFQHWKNKDKDVLVYEKLPENISYHETMKMSKYCICPSGWEVASPRIVEAIYAECVPIIISQQYVLPFSDVLDWDSFSVQIEVSEIPKLKEILLGISEEKYMRLQEGVKQVQRHFVVNNPPKRYDVFHMIIHSIWLRRLN