AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447440 MtrunA17_Chr4g0057211 94.797 615 32 0 1 615 1 615 0.0 1196
Msa1447440 MtrunA17_Chr1g0203981 49.142 641 274 14 12 610 8 638 0.0 577
Msa1447440 MtrunA17_Chr6g0474301 47.913 647 277 15 6 615 5 628 0.0 562
Msa1447440 MtrunA17_Chr8g0374071 36.723 354 190 8 31 370 68 401 1.62e-71 248
Msa1447440 MtrunA17_Chr8g0374071 40.000 205 115 5 398 598 725 925 1.54e-35 143
Msa1447440 MtrunA17_Chr8g0374091 37.309 327 179 6 50 370 95 401 2.40e-71 247
Msa1447440 MtrunA17_Chr8g0374091 38.725 204 119 4 398 598 721 921 2.88e-35 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447440 AT5G51920.1 44.209 613 276 12 1 604 1 556 3.15e-165 484
Msa1447440 AT4G22980.1 39.409 609 301 12 10 610 9 557 1.49e-135 407
Msa1447440 AT5G66950.1 40.367 327 170 6 50 370 93 400 6.23e-75 256
Msa1447440 AT5G66950.1 42.703 185 91 4 421 600 681 855 2.88e-35 142
Msa1447440 AT2G23520.1 38.532 327 176 6 50 370 95 402 1.79e-73 253
Msa1447440 AT2G23520.1 37.438 203 116 4 406 597 674 876 3.98e-30 127
Msa1447440 AT4G37100.1 36.612 366 196 9 63 421 110 446 4.53e-73 252
Msa1447440 AT4G37100.1 41.808 177 96 4 423 597 704 875 1.24e-33 137
Msa1447440 AT1G16540.2 21.503 572 308 23 75 589 4 491 4.68e-13 72.8
Msa1447440 AT1G16540.1 21.329 572 309 23 75 589 4 491 7.95e-13 72.0
Msa1447440 AT1G16540.3 21.329 572 309 23 75 589 4 491 8.72e-13 72.0

Find 91 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGATATTTGATTAAT+TGG 0.155783 tig0031748:-38301 Msa1447440:CDS
TCTCCATTCAATTCCTAAAT+TGG 0.170825 tig0031748:+38913 None:intergenic
ATTTCTTCTCTTAAAGATTT+AGG 0.172122 tig0031748:-38605 Msa1447440:CDS
CCGTCAAACTCTGGATTATT+AGG 0.217004 tig0031748:-38497 Msa1447440:CDS
CCACTTTATTCAAAGGTTAC+TGG 0.222847 tig0031748:-38830 Msa1447440:CDS
CAAACTATGAAGATGTTTAT+AGG 0.228960 tig0031748:-37920 Msa1447440:CDS
GAATTCACATGGTCCAATTT+AGG 0.230968 tig0031748:-38926 Msa1447440:CDS
CCTAAAGTGTCTCTTTCTTT+TGG 0.243729 tig0031748:+38728 None:intergenic
ATGAAGATGTTTATAGGTTA+TGG 0.244282 tig0031748:-37914 Msa1447440:CDS
AGGCCAATTCCCTCTCTTCT+TGG 0.281938 tig0031748:+38048 None:intergenic
GAAGATGATAACATGTAAAA+AGG 0.297027 tig0031748:-38882 Msa1447440:CDS
TGAAGATGTTTATAGGTTAT+GGG 0.323284 tig0031748:-37913 Msa1447440:CDS
AGTGAGAAGCTCTGATCCTT+TGG 0.342674 tig0031748:+39027 None:intergenic
AAAATATCAAGTTCTTTGAT+AGG 0.352408 tig0031748:-38073 Msa1447440:CDS
TGGAAAACAACCATTGAAAC+AGG 0.356867 tig0031748:+39612 None:intergenic
ATGTCTTTGGCACAAGAAAA+TGG 0.362723 tig0031748:-38785 Msa1447440:CDS
CTCAAATGAGTATAGGATAT+TGG 0.368511 tig0031748:-37970 Msa1447440:CDS
AAAATGCAACCACCATGTTC+TGG 0.372071 tig0031748:-39652 Msa1447440:CDS
TTTACTGACACTATTTGAAT+TGG 0.373946 tig0031748:+39549 None:intergenic
ATCTTTGGTGAAAATCCATC+TGG 0.378619 tig0031748:-38659 Msa1447440:CDS
GCAAATGAAGTTGAAAAGTT+AGG 0.395110 tig0031748:-38014 Msa1447440:CDS
GTCTTAACCATCTCGTTCTC+AGG 0.402171 tig0031748:+38464 None:intergenic
GGTGAAAATCCATCTGGGTT+TGG 0.402954 tig0031748:-38653 Msa1447440:CDS
AGTGTAATCAAAACATGTAT+TGG 0.413697 tig0031748:+39342 None:intergenic
AATGAAAACTAAGGCGTAAT+CGG 0.417763 tig0031748:+39102 None:intergenic
CCAGTAACCTTTGAATAAAG+TGG 0.420797 tig0031748:+38830 None:intergenic
GTAAATGTGGGAGAGATTCA+TGG 0.432348 tig0031748:+39467 None:intergenic
TTGAATTGGAAGTGTTATCA+TGG 0.434250 tig0031748:+39563 None:intergenic
TCATCACAACCCTGTTTCAA+TGG 0.435276 tig0031748:-39622 Msa1447440:CDS
GGAGATGAATGATGAAAGAT+TGG 0.441255 tig0031748:-38384 Msa1447440:CDS
TGAGAAGTTGTGGAAAATTG+AGG 0.444472 tig0031748:+39412 None:intergenic
AGAAGAGAGGGAATTGGCCT+TGG 0.450623 tig0031748:-38045 Msa1447440:CDS
AATGAACAAACCATAAAATC+AGG 0.451423 tig0031748:+38689 None:intergenic
GGTCCAATTTAGGAATTGAA+TGG 0.456840 tig0031748:-38916 Msa1447440:CDS
TTCATTTGCTTTAGTTTCCA+AGG 0.465141 tig0031748:+38028 None:intergenic
TTGATCTACTTGAGAAGTTG+TGG 0.473181 tig0031748:+39402 None:intergenic
GAGAAGTTGTGGAAAATTGA+GGG 0.473696 tig0031748:+39413 None:intergenic
TGGTTTGTGAAATGTGTGTT+GGG 0.475864 tig0031748:+39487 None:intergenic
GAACCAAGAAGAGAGGGAAT+TGG 0.478067 tig0031748:-38051 Msa1447440:CDS
AGCTCCACAATTTCTGATGA+TGG 0.487761 tig0031748:+38416 None:intergenic
CCTAATAATCCAGAGTTTGA+CGG 0.487873 tig0031748:+38497 None:intergenic
CCAAAAGAAAGAGACACTTT+AGG 0.489254 tig0031748:-38728 Msa1447440:CDS
GAGTTCTCAGAGGCAAGAAA+TGG 0.491382 tig0031748:+39586 None:intergenic
TGATCATAGCAATGAGGCAT+TGG 0.493736 tig0031748:-38999 Msa1447440:CDS
TTTCATTAATTAGAATCTAT+GGG 0.496665 tig0031748:-38229 Msa1447440:CDS
GAGAGTGCACCGTCAAACTC+TGG 0.498403 tig0031748:-38506 Msa1447440:CDS
CTCATTAGCAATGAAAACTA+AGG 0.499860 tig0031748:+39093 None:intergenic
TGGCATTTAATATATTTGAC+TGG 0.501389 tig0031748:-38175 Msa1447440:CDS
TTTCCACAAAATCAGCATCA+AGG 0.507755 tig0031748:+37874 None:intergenic
ATGGTTTGTGAAATGTGTGT+TGG 0.508371 tig0031748:+39486 None:intergenic
TTTAATATATTTGACTGGAA+AGG 0.511917 tig0031748:-38170 Msa1447440:CDS
TTGTGCAGAAGTTAGCTGAT+AGG 0.513041 tig0031748:-38127 Msa1447440:CDS
GGAATAATATCTCTCTAAGC+AGG 0.516126 tig0031748:-38106 Msa1447440:CDS
GCTAACTTCTGCACAAGTGT+TGG 0.523200 tig0031748:+38134 None:intergenic
AAAGTGGCTCAAATGAGTAT+AGG 0.526368 tig0031748:-37977 Msa1447440:CDS
TTAGGAAATGCTACAAGCAT+AGG 0.531063 tig0031748:-38587 Msa1447440:CDS
TCATTTCTATTTCAATCCAA+AGG 0.532256 tig0031748:-39043 Msa1447440:CDS
CTAGTTCTGATTCTTGTCCT+CGG 0.537895 tig0031748:+39173 None:intergenic
TGAATTGGAAGTGTTATCAT+GGG 0.542936 tig0031748:+39564 None:intergenic
ATCACCATCATCAGAAATTG+TGG 0.551638 tig0031748:-38420 Msa1447440:CDS
AATATATTAAATGCCACTGT+AGG 0.551745 tig0031748:+38182 None:intergenic
AATTGTGGAGCTACAAGGCA+TGG 0.566632 tig0031748:-38405 Msa1447440:CDS
TCAGAAATTGTGGAGCTACA+AGG 0.567806 tig0031748:-38410 Msa1447440:CDS
GGCATGTCCAAGAAGAAAAG+TGG 0.570932 tig0031748:-37993 Msa1447440:CDS
TATACGAGTCTTGTAAATGT+GGG 0.571430 tig0031748:+39455 None:intergenic
AAGACTTGAAGATGTGGCTG+AGG 0.577054 tig0031748:+39513 None:intergenic
TTGATAGGAACCAAGAAGAG+AGG 0.577292 tig0031748:-38058 Msa1447440:CDS
CGCTTCTCCTGAGAACGAGA+TGG 0.584335 tig0031748:-38471 Msa1447440:CDS
TGATAGGAACCAAGAAGAGA+GGG 0.586492 tig0031748:-38057 Msa1447440:CDS
TTATACGAGTCTTGTAAATG+TGG 0.592691 tig0031748:+39454 None:intergenic
AATAAACAACCAAACCCAGA+TGG 0.596208 tig0031748:+38644 None:intergenic
TCAGAGGCAAGAAATGGAGA+TGG 0.596800 tig0031748:+39592 None:intergenic
TCTTTGGTGAAAATCCATCT+GGG 0.598214 tig0031748:-38658 Msa1447440:CDS
GACTAAAGAAGAGCAAAATG+AGG 0.605972 tig0031748:-38444 Msa1447440:CDS
CTTTGGCACAAGAAAATGGT+TGG 0.615852 tig0031748:-38781 Msa1447440:CDS
ATTGATAGTTGCAAGAAGCA+AGG 0.622439 tig0031748:-38968 Msa1447440:CDS
GTGTGACATTGTGCAAATGT+AGG 0.624324 tig0031748:+38548 None:intergenic
TTAGACCACGCAGACTCAGT+GGG 0.643409 tig0031748:-38344 Msa1447440:CDS
GATGATGTTCCTCCAGAACA+TGG 0.646154 tig0031748:+39640 None:intergenic
TTCACATCGTGGACCTACAG+TGG 0.650419 tig0031748:-38195 Msa1447440:CDS
AGATTGGAAATTGAGTGTAG+AGG 0.650792 tig0031748:-38368 Msa1447440:CDS
ATTAGACCACGCAGACTCAG+TGG 0.651262 tig0031748:-38345 Msa1447440:CDS
ATGCAACCACCATGTTCTGG+AGG 0.655118 tig0031748:-39649 Msa1447440:CDS
CAAGTAGCGAGTAGACGACG+AGG 0.680933 tig0031748:+39261 None:intergenic
TTAGTCCCACTGAGTCTGCG+TGG 0.687077 tig0031748:+38339 None:intergenic
TGTGTATGATCATAGCAATG+AGG 0.687969 tig0031748:-39005 Msa1447440:CDS
GGGATAAAGACTTGAAGATG+TGG 0.694505 tig0031748:+39507 None:intergenic
GGAAAACAACCATTGAAACA+GGG 0.697784 tig0031748:+39613 None:intergenic
GTTATCATGGGAGTTCTCAG+AGG 0.702910 tig0031748:+39576 None:intergenic
AAGTCACAGATACTCTACCG+AGG 0.761105 tig0031748:-39190 Msa1447440:CDS
GATGTTCCTCCAGAACATGG+TGG 0.790301 tig0031748:+39643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTAATTAGAATCTA+TGG - tig0031748:39243-39262 Msa1447440:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - tig0031748:39244-39263 Msa1447440:CDS 15.0%
!!! TTTTCATTAATTAGAATCTA+TGG - tig0031748:39243-39262 Msa1447440:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - tig0031748:39244-39263 Msa1447440:CDS 15.0%
!!! ATGAATAAGAACATGATTTT+TGG + tig0031748:38189-38208 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - tig0031748:38774-38793 Msa1447440:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - tig0031748:38799-38818 Msa1447440:CDS 20.0%
!! ATTTCTTCTCTTAAAGATTT+AGG - tig0031748:38868-38887 Msa1447440:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - tig0031748:39172-39191 Msa1447440:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - tig0031748:39303-39322 Msa1447440:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - tig0031748:39400-39419 Msa1447440:CDS 20.0%
!!! ATGAATAAGAACATGATTTT+TGG + tig0031748:38189-38208 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - tig0031748:38774-38793 Msa1447440:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - tig0031748:38799-38818 Msa1447440:CDS 20.0%
!! ATTTCTTCTCTTAAAGATTT+AGG - tig0031748:38868-38887 Msa1447440:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - tig0031748:39172-39191 Msa1447440:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - tig0031748:39303-39322 Msa1447440:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - tig0031748:39400-39419 Msa1447440:CDS 20.0%
! TTTACTGACACTATTTGAAT+TGG + tig0031748:37927-37946 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + tig0031748:38134-38153 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - tig0031748:38133-38152 Msa1447440:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - tig0031748:38430-38449 Msa1447440:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - tig0031748:38591-38610 Msa1447440:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - tig0031748:38636-38655 Msa1447440:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - tig0031748:38665-38684 Msa1447440:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + tig0031748:38673-38692 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - tig0031748:38675-38694 Msa1447440:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + tig0031748:38787-38806 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + tig0031748:39228-39247 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + tig0031748:39294-39313 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - tig0031748:39298-39317 Msa1447440:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + tig0031748:39394-39413 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - tig0031748:39553-39572 Msa1447440:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - tig0031748:39559-39578 Msa1447440:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - tig0031748:39560-39579 Msa1447440:CDS 25.0%
! TTTACTGACACTATTTGAAT+TGG + tig0031748:37927-37946 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + tig0031748:38134-38153 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - tig0031748:38133-38152 Msa1447440:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - tig0031748:38430-38449 Msa1447440:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - tig0031748:38591-38610 Msa1447440:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - tig0031748:38636-38655 Msa1447440:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - tig0031748:38665-38684 Msa1447440:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + tig0031748:38673-38692 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - tig0031748:38675-38694 Msa1447440:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + tig0031748:38787-38806 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + tig0031748:39228-39247 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + tig0031748:39294-39313 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - tig0031748:39298-39317 Msa1447440:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + tig0031748:39394-39413 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - tig0031748:39553-39572 Msa1447440:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - tig0031748:39559-39578 Msa1447440:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - tig0031748:39560-39579 Msa1447440:CDS 25.0%
!! TGAATTGGAAGTGTTATCAT+GGG + tig0031748:37912-37931 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + tig0031748:37913-37932 None:intergenic 30.0%
! TATACGAGTCTTGTAAATGT+GGG + tig0031748:38021-38040 None:intergenic 30.0%
! TTATACGAGTCTTGTAAATG+TGG + tig0031748:38022-38041 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - tig0031748:38139-38158 Msa1447440:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + tig0031748:38374-38393 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + tig0031748:38383-38402 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - tig0031748:38381-38400 Msa1447440:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - tig0031748:38536-38555 Msa1447440:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + tig0031748:38563-38582 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - tig0031748:38604-38623 Msa1447440:CDS 30.0%
!! CCACGATGTGAATTTATTTT+TGG + tig0031748:39270-39289 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - tig0031748:39267-39286 Msa1447440:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + tig0031748:39448-39467 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - tig0031748:39459-39478 Msa1447440:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - tig0031748:39503-39522 Msa1447440:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - tig0031748:39610-39629 Msa1447440:CDS 30.0%
!! TGAATTGGAAGTGTTATCAT+GGG + tig0031748:37912-37931 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + tig0031748:37913-37932 None:intergenic 30.0%
! TATACGAGTCTTGTAAATGT+GGG + tig0031748:38021-38040 None:intergenic 30.0%
! TTATACGAGTCTTGTAAATG+TGG + tig0031748:38022-38041 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - tig0031748:38139-38158 Msa1447440:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + tig0031748:38374-38393 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + tig0031748:38383-38402 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - tig0031748:38381-38400 Msa1447440:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - tig0031748:38536-38555 Msa1447440:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + tig0031748:38563-38582 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - tig0031748:38604-38623 Msa1447440:CDS 30.0%
!! CCACGATGTGAATTTATTTT+TGG + tig0031748:39270-39289 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - tig0031748:39267-39286 Msa1447440:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + tig0031748:39448-39467 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - tig0031748:39459-39478 Msa1447440:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - tig0031748:39503-39522 Msa1447440:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - tig0031748:39610-39629 Msa1447440:CDS 30.0%
GGAAAACAACCATTGAAACA+GGG + tig0031748:37863-37882 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + tig0031748:37864-37883 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + tig0031748:37989-38008 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + tig0031748:37990-38009 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + tig0031748:38063-38082 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + tig0031748:38064-38083 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + tig0031748:38074-38093 None:intergenic 35.0%
TGTGTATGATCATAGCAATG+AGG - tig0031748:38468-38487 Msa1447440:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - tig0031748:38505-38524 Msa1447440:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - tig0031748:38547-38566 Msa1447440:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - tig0031748:38557-38576 Msa1447440:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + tig0031748:38646-38665 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - tig0031748:38643-38662 Msa1447440:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - tig0031748:38688-38707 Msa1447440:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + tig0031748:38748-38767 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - tig0031748:38745-38764 Msa1447440:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - tig0031748:38814-38833 Msa1447440:CDS 35.0%
TCTTTGGTGAAAATCCATCT+GGG - tig0031748:38815-38834 Msa1447440:CDS 35.0%
AATAAACAACCAAACCCAGA+TGG + tig0031748:38832-38851 None:intergenic 35.0%
TTAGGAAATGCTACAAGCAT+AGG - tig0031748:38886-38905 Msa1447440:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + tig0031748:38979-38998 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - tig0031748:39029-39048 Msa1447440:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - tig0031748:39053-39072 Msa1447440:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - tig0031748:39089-39108 Msa1447440:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - tig0031748:39105-39124 Msa1447440:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - tig0031748:39367-39386 Msa1447440:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + tig0031748:39490-39509 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - tig0031748:39496-39515 Msa1447440:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - tig0031748:39521-39540 Msa1447440:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - tig0031748:39522-39541 Msa1447440:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + tig0031748:39602-39621 None:intergenic 35.0%
GGAAAACAACCATTGAAACA+GGG + tig0031748:37863-37882 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + tig0031748:37864-37883 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + tig0031748:37989-38008 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + tig0031748:37990-38009 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + tig0031748:38063-38082 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + tig0031748:38064-38083 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + tig0031748:38074-38093 None:intergenic 35.0%
TGTGTATGATCATAGCAATG+AGG - tig0031748:38468-38487 Msa1447440:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - tig0031748:38505-38524 Msa1447440:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - tig0031748:38547-38566 Msa1447440:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - tig0031748:38557-38576 Msa1447440:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + tig0031748:38646-38665 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - tig0031748:38643-38662 Msa1447440:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - tig0031748:38688-38707 Msa1447440:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + tig0031748:38748-38767 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - tig0031748:38745-38764 Msa1447440:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - tig0031748:38814-38833 Msa1447440:CDS 35.0%
TCTTTGGTGAAAATCCATCT+GGG - tig0031748:38815-38834 Msa1447440:CDS 35.0%
AATAAACAACCAAACCCAGA+TGG + tig0031748:38832-38851 None:intergenic 35.0%
TTAGGAAATGCTACAAGCAT+AGG - tig0031748:38886-38905 Msa1447440:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + tig0031748:38979-38998 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - tig0031748:39029-39048 Msa1447440:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - tig0031748:39053-39072 Msa1447440:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - tig0031748:39089-39108 Msa1447440:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - tig0031748:39105-39124 Msa1447440:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - tig0031748:39367-39386 Msa1447440:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + tig0031748:39490-39509 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - tig0031748:39496-39515 Msa1447440:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - tig0031748:39521-39540 Msa1447440:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - tig0031748:39522-39541 Msa1447440:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + tig0031748:39602-39621 None:intergenic 35.0%
TCATCACAACCCTGTTTCAA+TGG - tig0031748:37851-37870 Msa1447440:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + tig0031748:37969-37988 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + tig0031748:38009-38028 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + tig0031748:38303-38322 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - tig0031748:38474-38493 Msa1447440:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - tig0031748:38692-38711 Msa1447440:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + tig0031748:38928-38947 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - tig0031748:38976-38995 Msa1447440:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + tig0031748:39060-39079 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - tig0031748:39063-39082 Msa1447440:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - tig0031748:39346-39365 Msa1447440:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - tig0031748:39415-39434 Msa1447440:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - tig0031748:39416-39435 Msa1447440:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - tig0031748:39574-39593 Msa1447440:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - tig0031748:39596-39615 Msa1447440:CDS 40.0%
TCATCACAACCCTGTTTCAA+TGG - tig0031748:37851-37870 Msa1447440:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + tig0031748:37969-37988 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + tig0031748:38009-38028 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + tig0031748:38303-38322 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - tig0031748:38474-38493 Msa1447440:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - tig0031748:38692-38711 Msa1447440:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + tig0031748:38928-38947 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - tig0031748:38976-38995 Msa1447440:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + tig0031748:39060-39079 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - tig0031748:39063-39082 Msa1447440:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - tig0031748:39346-39365 Msa1447440:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - tig0031748:39415-39434 Msa1447440:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - tig0031748:39416-39435 Msa1447440:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - tig0031748:39574-39593 Msa1447440:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - tig0031748:39596-39615 Msa1447440:CDS 40.0%
GATGATGTTCCTCCAGAACA+TGG + tig0031748:37836-37855 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + tig0031748:37884-37903 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + tig0031748:37890-37909 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + tig0031748:37900-37919 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + tig0031748:37963-37982 None:intergenic 45.0%
AAGTCACAGATACTCTACCG+AGG - tig0031748:38283-38302 Msa1447440:CDS 45.0%
! AGTGAGAAGCTCTGATCCTT+TGG + tig0031748:38449-38468 None:intergenic 45.0%
GGTGAAAATCCATCTGGGTT+TGG - tig0031748:38820-38839 Msa1447440:CDS 45.0%
GTCTTAACCATCTCGTTCTC+AGG + tig0031748:39012-39031 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - tig0031748:39068-39087 Msa1447440:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + tig0031748:39342-39361 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - tig0031748:39422-39441 Msa1447440:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - tig0031748:39480-39499 Msa1447440:CDS 45.0%
GATGATGTTCCTCCAGAACA+TGG + tig0031748:37836-37855 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + tig0031748:37884-37903 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + tig0031748:37890-37909 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + tig0031748:37900-37919 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + tig0031748:37963-37982 None:intergenic 45.0%
AAGTCACAGATACTCTACCG+AGG - tig0031748:38283-38302 Msa1447440:CDS 45.0%
! AGTGAGAAGCTCTGATCCTT+TGG + tig0031748:38449-38468 None:intergenic 45.0%
GGTGAAAATCCATCTGGGTT+TGG - tig0031748:38820-38839 Msa1447440:CDS 45.0%
GTCTTAACCATCTCGTTCTC+AGG + tig0031748:39012-39031 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - tig0031748:39068-39087 Msa1447440:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + tig0031748:39342-39361 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - tig0031748:39422-39441 Msa1447440:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - tig0031748:39480-39499 Msa1447440:CDS 45.0%
ATGCAACCACCATGTTCTGG+AGG - tig0031748:37824-37843 Msa1447440:CDS 50.0%
GATGTTCCTCCAGAACATGG+TGG + tig0031748:37833-37852 None:intergenic 50.0%
ATTAGACCACGCAGACTCAG+TGG - tig0031748:39128-39147 Msa1447440:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - tig0031748:39129-39148 Msa1447440:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - tig0031748:39278-39297 Msa1447440:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + tig0031748:39428-39447 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - tig0031748:39428-39447 Msa1447440:CDS 50.0%
ATGCAACCACCATGTTCTGG+AGG - tig0031748:37824-37843 Msa1447440:CDS 50.0%
GATGTTCCTCCAGAACATGG+TGG + tig0031748:37833-37852 None:intergenic 50.0%
ATTAGACCACGCAGACTCAG+TGG - tig0031748:39128-39147 Msa1447440:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - tig0031748:39129-39148 Msa1447440:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - tig0031748:39278-39297 Msa1447440:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + tig0031748:39428-39447 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - tig0031748:39428-39447 Msa1447440:CDS 50.0%
CAAGTAGCGAGTAGACGACG+AGG + tig0031748:38215-38234 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - tig0031748:38967-38986 Msa1447440:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - tig0031748:39002-39021 Msa1447440:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + tig0031748:39137-39156 None:intergenic 55.0%
CAAGTAGCGAGTAGACGACG+AGG + tig0031748:38215-38234 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - tig0031748:38967-38986 Msa1447440:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - tig0031748:39002-39021 Msa1447440:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + tig0031748:39137-39156 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0031748 gene 37824 39671 37824 ID=Msa1447440;Name=Msa1447440
tig0031748 mRNA 37824 39671 37824 ID=Msa1447440-mRNA-1;Parent=Msa1447440;Name=Msa1447440-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|615
tig0031748 exon 37824 39671 37824 ID=Msa1447440-mRNA-1:exon:15897;Parent=Msa1447440-mRNA-1
tig0031748 CDS 37824 39671 37824 ID=Msa1447440-mRNA-1:cds;Parent=Msa1447440-mRNA-1
Gene Sequence

>Msa1447440

ATGCAACCACCATGTTCTGGAGGAACATCATCACAACCCTGTTTCAATGGTTGTTTTCCATCTCCATTTCTTGCCTCTGAGAACTCCCATGATAACACTTCCAATTCAAATAGTGTCAGTAAAAATGATGACTTAGCCTCAGCCACATCTTCAAGTCTTTATCCCAACACACATTTCACAAACCATGAATCTCTCCCACATTTACAAGACTCGTATAATAACTTCATCAAATCATTCCCTCAATTTTCCACAACTTCTCAAGTAGATCAAATTCGAGATCAAGAATATCAACACTTGAATAGTCTTTCCAATACATGTTTTGATTACACTGGTTATGGTCTTTTCTCTTATGCTCAGCAGAACCAAAAATCATGTTCTTATTCATCTTCCTCGTCGTCTACTCGCTACTTGAACTTAGAACAATCGTTCTTTGATGTATCGATTAAGTCAATGAATTTGAAGTCACAGATACTCTACCGAGGACAAGAATCAGAACTAGAGTCAAGAATGAGAGAAAGAATAATGACATTTATGAATGTCTCTGAAACCGATTACGCCTTAGTTTTCATTGCTAATGAGGTATCTGCTTTTAAACTTGTATCTGATTCATTTCTATTTCAATCCAAAGGATCAGAGCTTCTCACTGTGTATGATCATAGCAATGAGGCATTGGAATTGATGATTGATAGTTGCAAGAAGCAAGGAGTGCAAATTTTATCAGCAGAATTCACATGGTCCAATTTAGGAATTGAATGGAGAAAACTAAAGAAGATGATAACATGTAAAAAGGAGAAGAGAAAAGGTAGTTTATTTGTTTTTCCACTTTATTCAAAGGTTACTGGATCACCATATTCTTATTTTTGGATGTCTTTGGCACAAGAAAATGGTTGGTGTGTAATGCTTGATTTATGTGCATTGAGACCAAAAGAAAGAGACACTTTAGGTATGTCTATGTTTAAACCTGATTTTATGGTTTGTTCATTTTACAAAATCTTTGGTGAAAATCCATCTGGGTTTGGTTGTTTATTTGTCAAAAAATCAAGTATTTCTTCTCTTAAAGATTTAGGAAATGCTACAAGCATAGGAATTATAAGTCTTGTTCCTACATTTGCACAATGTCACACTTCTAGCTCTCGTCAAAATGAGAGTGCACCGTCAAACTCTGGATTATTAGGATTCGCTTCTCCTGAGAACGAGATGGTTAAGACTAAAGAAGAGCAAAATGAGGTATCACCATCATCAGAAATTGTGGAGCTACAAGGCATGGAGATGAATGATGAAAGATTGGAAATTGAGTGTAGAGGATTAGACCACGCAGACTCAGTGGGACTAATAGTGATTAGTACAAGAACAAGATATTTGATTAATTGGCTTGTTAATGCATTAATGAGTCTTCAACATCCACATGATGAAAATAGATTTTCATTAATTAGAATCTATGGGCCAAAAATAAATTCACATCGTGGACCTACAGTGGCATTTAATATATTTGACTGGAAAGGAGAAAAGATTGATCCAACACTTGTGCAGAAGTTAGCTGATAGGAATAATATCTCTCTAAGCAGGTCCTGTTTGAAAAATATCAAGTTCTTTGATAGGAACCAAGAAGAGAGGGAATTGGCCTTGGAAACTAAAGCAAATGAAGTTGAAAAGTTAGGCATGTCCAAGAAGAAAAGTGGCTCAAATGAGTATAGGATATTGGTTTTGACTGCAACATTGGGCTTCTTGACAAACTATGAAGATGTTTATAGGTTATGGGCTTTTGTTTCTAGGTTCCTTGATGCTGATTTTGTGGAAAAAGAGAGATGGAGATACATTGCTCTAAATCAAAAAACTATTGAAGTGTGA

Protein sequence

>Msa1447440

MQPPCSGGTSSQPCFNGCFPSPFLASENSHDNTSNSNSVSKNDDLASATSSSLYPNTHFTNHESLPHLQDSYNNFIKSFPQFSTTSQVDQIRDQEYQHLNSLSNTCFDYTGYGLFSYAQQNQKSCSYSSSSSSTRYLNLEQSFFDVSIKSMNLKSQILYRGQESELESRMRERIMTFMNVSETDYALVFIANEVSAFKLVSDSFLFQSKGSELLTVYDHSNEALELMIDSCKKQGVQILSAEFTWSNLGIEWRKLKKMITCKKEKRKGSLFVFPLYSKVTGSPYSYFWMSLAQENGWCVMLDLCALRPKERDTLGMSMFKPDFMVCSFYKIFGENPSGFGCLFVKKSSISSLKDLGNATSIGIISLVPTFAQCHTSSSRQNESAPSNSGLLGFASPENEMVKTKEEQNEVSPSSEIVELQGMEMNDERLEIECRGLDHADSVGLIVISTRTRYLINWLVNALMSLQHPHDENRFSLIRIYGPKINSHRGPTVAFNIFDWKGEKIDPTLVQKLADRNNISLSRSCLKNIKFFDRNQEERELALETKANEVEKLGMSKKKSGSNEYRILVLTATLGFLTNYEDVYRLWAFVSRFLDADFVEKERWRYIALNQKTIEV*