Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437360 | RHN81020.1 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437360 | sp|Q9FZ24|PPR4_ARATH | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.21e-144 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437360 | A0A396JRT9 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033950 | Msa0437360 | 0.910972 | 1.028745e-82 | -8.615850e-47 |
| Msa0034030 | Msa0437360 | 0.907183 | 6.670561e-81 | -8.615850e-47 |
| Msa0048550 | Msa0437360 | 0.807032 | 6.161985e-50 | -8.615850e-47 |
| Msa0070700 | Msa0437360 | 0.800899 | 1.160611e-48 | -8.615850e-47 |
| Msa0105620 | Msa0437360 | 0.803304 | 3.715696e-49 | -8.615850e-47 |
| Msa0127020 | Msa0437360 | 0.806807 | 6.873871e-50 | -8.615850e-47 |
| Msa0128050 | Msa0437360 | 0.869994 | 2.039850e-66 | -8.615850e-47 |
| Msa0139350 | Msa0437360 | 0.829247 | 5.727865e-55 | -8.615850e-47 |
| Msa0144370 | Msa0437360 | 0.809026 | 2.318373e-50 | -8.615850e-47 |
| Msa0168230 | Msa0437360 | 0.817622 | 2.997084e-52 | -8.615850e-47 |
| Msa0169280 | Msa0437360 | 0.804261 | 2.351176e-49 | -8.615850e-47 |
| Msa0388700 | Msa0437360 | 0.803108 | 4.079587e-49 | -8.615850e-47 |
| Msa0437360 | Msa0482130 | 0.818882 | 1.554561e-52 | -8.615850e-47 |
| Msa0437360 | Msa0542090 | 0.836095 | 1.143798e-56 | -8.615850e-47 |
| Msa0437360 | Msa0542130 | 0.838051 | 3.616807e-57 | -8.615850e-47 |
| Msa0437360 | Msa0685140 | 0.819263 | 1.273289e-52 | -8.615850e-47 |
| Msa0437360 | Msa0689260 | 0.803725 | 3.039533e-49 | -8.615850e-47 |
| Msa0437360 | Msa0711780 | 0.815608 | 8.471147e-52 | -8.615850e-47 |
| Msa0437360 | Msa0754380 | 0.814185 | 1.752274e-51 | -8.615850e-47 |
| Msa0437360 | Msa0799260 | 0.800630 | 1.317227e-48 | -8.615850e-47 |
| Msa0437360 | Msa0830540 | 0.801500 | 8.743654e-49 | -8.615850e-47 |
| Msa0437360 | Msa0945440 | 0.814728 | 1.329039e-51 | -8.615850e-47 |
| Msa0437360 | Msa1153060 | 0.812175 | 4.839850e-51 | -8.615850e-47 |
| Msa0437360 | Msa1160590 | 0.815768 | 7.804485e-52 | -8.615850e-47 |
| Msa0437360 | Msa1174470 | 0.816944 | 4.258755e-52 | -8.615850e-47 |
| Msa0437360 | Msa1181250 | 0.825920 | 3.602436e-54 | -8.615850e-47 |
| Msa0437360 | Msa1181330 | 0.825273 | 5.128647e-54 | -8.615850e-47 |
| Msa0437360 | Msa1209260 | 0.806935 | 6.461034e-50 | -8.615850e-47 |
| Msa0437360 | Msa1224810 | 0.801134 | 1.039317e-48 | -8.615850e-47 |
| Msa0437360 | Msa1266990 | 0.817835 | 2.683784e-52 | -8.615850e-47 |
| Msa0437360 | Msa1358250 | 0.804053 | 2.598664e-49 | -8.615850e-47 |
| Msa0437360 | Msa1384190 | 0.809797 | 1.584146e-50 | -8.615850e-47 |
| Msa0437360 | Msa1400220 | 0.904673 | 9.597122e-80 | -8.615850e-47 |
| Msa0437360 | Msa1411750 | 0.817692 | 2.889957e-52 | -8.615850e-47 |
| Msa0437360 | Msa1419870 | 0.801751 | 7.768327e-49 | -8.615850e-47 |
| Msa0279220 | Msa0437360 | 0.802216 | 6.233580e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437360 | MtrunA17_Chr1g0194521 | 97.292 | 480 | 13 | 0 | 1 | 480 | 60 | 539 | 0.0 | 972 |
| Msa0437360 | MtrunA17_Chr8g0368151 | 38.377 | 456 | 265 | 7 | 40 | 480 | 29 | 483 | 1.66e-93 | 292 |
| Msa0437360 | MtrunA17_Chr2g0282091 | 30.176 | 454 | 303 | 8 | 29 | 471 | 26 | 476 | 1.77e-62 | 211 |
| Msa0437360 | MtrunA17_Chr8g0359961 | 28.846 | 416 | 293 | 3 | 30 | 442 | 32 | 447 | 6.17e-61 | 207 |
| Msa0437360 | MtrunA17_Chr1g0185601 | 30.839 | 441 | 289 | 9 | 20 | 450 | 25 | 459 | 2.07e-56 | 195 |
| Msa0437360 | MtrunA17_Chr2g0303221 | 30.189 | 424 | 280 | 8 | 13 | 430 | 19 | 432 | 3.18e-56 | 194 |
| Msa0437360 | MtrunA17_Chr4g0021331 | 30.425 | 424 | 281 | 6 | 14 | 431 | 16 | 431 | 2.40e-55 | 192 |
| Msa0437360 | MtrunA17_Chr3g0132571 | 29.252 | 441 | 295 | 8 | 20 | 450 | 26 | 459 | 7.11e-51 | 180 |
| Msa0437360 | MtrunA17_Chr2g0324251 | 27.381 | 420 | 255 | 9 | 51 | 441 | 52 | 450 | 5.56e-42 | 155 |
| Msa0437360 | MtrunA17_Chr1g0155351 | 30.241 | 291 | 199 | 4 | 46 | 332 | 69 | 359 | 1.62e-41 | 152 |
| Msa0437360 | MtrunA17_Chr8g0335951 | 32.018 | 228 | 153 | 2 | 235 | 460 | 199 | 426 | 3.12e-30 | 122 |
| Msa0437360 | MtrunA17_Chr8g0335951 | 28.082 | 292 | 170 | 8 | 9 | 264 | 46 | 333 | 3.64e-19 | 89.7 |
| Msa0437360 | MtrunA17_Chr8g0349421 | 32.653 | 196 | 131 | 1 | 251 | 445 | 3 | 198 | 1.40e-26 | 107 |
| Msa0437360 | MtrunA17_Chr7g0256181 | 23.810 | 399 | 286 | 12 | 38 | 430 | 163 | 549 | 1.68e-24 | 107 |
| Msa0437360 | MtrunA17_Chr1g0171501 | 22.931 | 423 | 306 | 12 | 29 | 445 | 139 | 547 | 2.39e-22 | 100 |
| Msa0437360 | MtrunA17_Chr2g0328121 | 23.197 | 319 | 241 | 4 | 17 | 333 | 30 | 346 | 6.32e-18 | 86.3 |
| Msa0437360 | MtrunA17_Chr8g0349431 | 40.870 | 115 | 65 | 2 | 45 | 157 | 8 | 121 | 1.43e-16 | 76.3 |
| Msa0437360 | MtrunA17_Chr8g0387281 | 22.884 | 319 | 234 | 7 | 82 | 392 | 334 | 648 | 1.71e-12 | 69.7 |
| Msa0437360 | MtrunA17_Chr7g0220481 | 29.213 | 178 | 122 | 3 | 130 | 304 | 283 | 459 | 1.20e-11 | 67.4 |
| Msa0437360 | MtrunA17_Chr8g0377751 | 22.812 | 320 | 223 | 8 | 53 | 359 | 722 | 1030 | 7.40e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437360 | AT1G02370.1 | 43.160 | 519 | 245 | 6 | 1 | 469 | 1 | 519 | 2.25e-145 | 427 |
| Msa0437360 | AT4G01990.1 | 43.542 | 480 | 249 | 8 | 11 | 469 | 6 | 484 | 2.50e-128 | 382 |
| Msa0437360 | AT1G60770.1 | 37.069 | 464 | 271 | 10 | 33 | 480 | 25 | 483 | 1.13e-89 | 282 |
| Msa0437360 | AT1G02150.1 | 34.259 | 432 | 279 | 4 | 33 | 459 | 69 | 500 | 1.33e-76 | 249 |
| Msa0437360 | AT4G21705.1 | 31.818 | 418 | 281 | 4 | 29 | 442 | 23 | 440 | 1.46e-68 | 227 |
| Msa0437360 | AT2G20710.1 | 29.540 | 413 | 284 | 5 | 32 | 441 | 39 | 447 | 1.15e-57 | 198 |
| Msa0437360 | AT4G02820.1 | 29.895 | 475 | 305 | 9 | 8 | 470 | 41 | 499 | 4.33e-55 | 192 |
| Msa0437360 | AT5G27460.1 | 29.070 | 430 | 290 | 6 | 12 | 431 | 21 | 445 | 5.80e-53 | 186 |
| Msa0437360 | AT5G09450.1 | 31.056 | 322 | 216 | 5 | 25 | 340 | 49 | 370 | 2.66e-48 | 171 |
| Msa0437360 | AT2G20710.2 | 29.942 | 344 | 235 | 4 | 100 | 441 | 13 | 352 | 5.68e-47 | 167 |
| Msa0437360 | AT1G28020.1 | 28.267 | 329 | 231 | 5 | 36 | 359 | 41 | 369 | 3.99e-32 | 129 |
| Msa0437360 | AT1G80270.1 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0437360 | AT1G80270.3 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0437360 | AT1G80270.2 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0437360 | AT1G80270.5 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0437360 | AT1G80270.4 | 26.523 | 279 | 197 | 7 | 19 | 294 | 118 | 391 | 4.30e-24 | 105 |
| Msa0437360 | AT1G15480.1 | 25.205 | 365 | 261 | 9 | 43 | 402 | 138 | 495 | 3.97e-23 | 103 |
| Msa0437360 | AT3G15590.1 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| Msa0437360 | AT3G15590.2 | 29.200 | 250 | 173 | 4 | 46 | 293 | 156 | 403 | 1.31e-22 | 101 |
| Msa0437360 | AT1G07590.1 | 24.633 | 341 | 251 | 5 | 27 | 365 | 64 | 400 | 2.41e-19 | 91.3 |
| Msa0437360 | AT3G11380.1 | 26.780 | 295 | 180 | 6 | 66 | 355 | 78 | 341 | 8.44e-18 | 86.7 |
| Msa0437360 | AT3G11380.1 | 34.722 | 144 | 90 | 4 | 57 | 196 | 372 | 515 | 4.59e-12 | 68.6 |
| Msa0437360 | AT1G28000.1 | 24.567 | 289 | 210 | 6 | 13 | 293 | 13 | 301 | 1.30e-15 | 79.0 |
| Msa0437360 | AT5G21222.1 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0437360 | AT5G21222.2 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0437360 | AT5G21222.4 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0437360 | AT5G21222.3 | 25.000 | 232 | 148 | 6 | 85 | 294 | 467 | 694 | 2.39e-12 | 70.1 |
| Msa0437360 | AT5G02860.1 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0437360 | AT5G02860.4 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0437360 | AT5G02860.2 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0437360 | AT5G02860.5 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
| Msa0437360 | AT5G02860.3 | 24.299 | 321 | 221 | 11 | 63 | 365 | 128 | 444 | 6.36e-11 | 65.5 |
Find 136 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGGTTTGCCTTCTTATT+TGG | 0.179522 | 3_2:-91613531 | None:intergenic |
| GGGCATAATAAAATTGTTTA+AGG | 0.218164 | 3_2:+91615263 | Msa0437360:CDS |
| AATTACGGCCGTTTGATTTC+CGG | 0.228375 | 3_2:+91613456 | Msa0437360:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.262779 | 3_2:+91614757 | Msa0437360:CDS |
| ATGAGTTAAGCAAGATTCTT+AGG | 0.291614 | 3_2:+91615598 | Msa0437360:CDS |
| GGCATGTTAGTTATGATTCT+AGG | 0.296691 | 3_2:+91615298 | Msa0437360:CDS |
| GTTTACTTGTTGTTTCTTGA+AGG | 0.304962 | 3_2:-91613393 | None:intergenic |
| CCATATCATTAAGCCTTCTA+AGG | 0.308417 | 3_2:-91615239 | None:intergenic |
| TTATGCTTTCTAACCTTAGA+AGG | 0.314226 | 3_2:+91615226 | Msa0437360:CDS |
| CTTTCCCTTCGATTATATAC+TGG | 0.317101 | 3_2:-91613608 | None:intergenic |
| GCTGCAGAGGACCTTTCTTT+AGG | 0.319713 | 3_2:+91615403 | Msa0437360:CDS |
| GAAAACCAGTACTTATCTTA+AGG | 0.323675 | 3_2:-91615868 | None:intergenic |
| AGGACCTTTCTTTAGGATTC+GGG | 0.341722 | 3_2:+91615410 | Msa0437360:CDS |
| GAGGACCTTTCTTTAGGATT+CGG | 0.351526 | 3_2:+91615409 | Msa0437360:CDS |
| TAGGATTCGGGAAATGTTCA+TGG | 0.370256 | 3_2:+91615422 | Msa0437360:CDS |
| CCTTAGAAGGCTTAATGATA+TGG | 0.371817 | 3_2:+91615239 | Msa0437360:CDS |
| GGAATGTTCTTGTGGGCTTA+AGG | 0.373813 | 3_2:+91616039 | Msa0437360:three_prime_UTR |
| ACAAGAACATTCCCTCCTAT+TGG | 0.387788 | 3_2:-91616029 | None:intergenic |
| TTCTTGCTGAGCCTTTATGC+TGG | 0.387794 | 3_2:+91615123 | Msa0437360:CDS |
| CATATACATAGACATCAAAT+TGG | 0.389303 | 3_2:-91614803 | None:intergenic |
| TTTATTGGAGAAAGGTCAAT+TGG | 0.391224 | 3_2:+91615449 | Msa0437360:CDS |
| CTAGTGATGATTTGATAATC+AGG | 0.397665 | 3_2:+91615834 | Msa0437360:three_prime_UTR |
| GGAAGCTGTGTCGGTCTTTG+AGG | 0.399258 | 3_2:+91615368 | Msa0437360:CDS |
| TTTACTTGTTGTTTCTTGAA+GGG | 0.405475 | 3_2:-91613392 | None:intergenic |
| ATGGGTGTGGTGTGTATTCA+TGG | 0.406971 | 3_2:-91615759 | None:intergenic |
| GTTGGTTGGTGTTGCAGTGC+AGG | 0.407651 | 3_2:+91615320 | Msa0437360:CDS |
| CTCTATGATCGAACCACAGC+AGG | 0.410581 | 3_2:-91613422 | None:intergenic |
| GTTACAAATTCTCGTGGGCT+TGG | 0.417988 | 3_2:-91615719 | None:intergenic |
| CTGCATGAGCTCAGTCCAAT+AGG | 0.427006 | 3_2:+91616014 | Msa0437360:three_prime_UTR |
| GAAGAAGAAACAGATCTTGA+TGG | 0.427741 | 3_2:+91615570 | Msa0437360:CDS |
| AATAAAATTGTTTAAGGAGT+GGG | 0.433563 | 3_2:+91615269 | Msa0437360:CDS |
| TGTTTAAGGAGTGGGAATCT+AGG | 0.433657 | 3_2:+91615277 | Msa0437360:CDS |
| TGGTGCTATGAGCCACTTAG+AGG | 0.441022 | 3_2:+91615473 | Msa0437360:CDS |
| CATTACCAGTCCCAGCATAA+AGG | 0.447077 | 3_2:-91615134 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.448455 | 3_2:+91614852 | Msa0437360:CDS |
| TCTTGCTGAGCCTTTATGCT+GGG | 0.452519 | 3_2:+91615124 | Msa0437360:CDS |
| GATAGCTCCGATTGGTCACC+GGG | 0.462784 | 3_2:-91615200 | None:intergenic |
| CATAAAGGCTCAGCAAGAAA+TGG | 0.465952 | 3_2:-91615119 | None:intergenic |
| TTAAAGAGGTTTATAGAGTG+TGG | 0.469721 | 3_2:+91615157 | Msa0437360:CDS |
| ATTTGATGTCTATGTATATG+AGG | 0.470560 | 3_2:+91614806 | Msa0437360:CDS |
| CGTCTGCGACACGGTTCCTC+CGG | 0.470565 | 3_2:-91613580 | None:intergenic |
| TTTCTAGGTCGGCTAGTCTT+CGG | 0.471475 | 3_2:-91613554 | None:intergenic |
| TATTTCCTTAAGATAAGTAC+TGG | 0.471573 | 3_2:+91615863 | Msa0437360:three_prime_UTR |
| GCACTTACAGCTTGTGGTGA+AGG | 0.473435 | 3_2:-91615531 | None:intergenic |
| TGGTATTCATACAGTATTGA+AGG | 0.474569 | 3_2:+91615680 | Msa0437360:CDS |
| TATGTGTACTTGTTCTTAGC+AGG | 0.476882 | 3_2:-91614676 | None:intergenic |
| AGAGACTCTGAGATGAATTA+CGG | 0.482119 | 3_2:+91613441 | Msa0437360:exon |
| TAAAGAGGTTTATAGAGTGT+GGG | 0.486756 | 3_2:+91615158 | Msa0437360:CDS |
| CTGAGCCTTTATGCTGGGAC+TGG | 0.488058 | 3_2:+91615129 | Msa0437360:CDS |
| AGTTATGATTCTAGGTTGGT+TGG | 0.491947 | 3_2:+91615306 | Msa0437360:CDS |
| ATAATCGAAGGGAAAGCCTT+AGG | 0.492451 | 3_2:+91613615 | Msa0437360:CDS |
| TTCAACCACTCCTTTCACTT+TGG | 0.493231 | 3_2:-91614623 | None:intergenic |
| TACGATACTTTCGAAGCTCC+TGG | 0.493561 | 3_2:-91613662 | None:intergenic |
| CACCGGGGTGATCTTCTTGA+GGG | 0.494822 | 3_2:-91615184 | None:intergenic |
| TGTTCTTGTGGGCTTAAGGC+AGG | 0.495189 | 3_2:+91616043 | Msa0437360:three_prime_UTR |
| TGTGCTGCTTTGAATGACCT+TGG | 0.495240 | 3_2:+91614925 | Msa0437360:CDS |
| ATGAATACCAGGAGATGATT+CGG | 0.497054 | 3_2:-91615667 | None:intergenic |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 3_2:+91613462 | Msa0437360:CDS |
| AGATCACCCCGGTGACCAAT+CGG | 0.504230 | 3_2:+91615193 | Msa0437360:CDS |
| TGAACTCGAGAGATGCGTCC+AGG | 0.504375 | 3_2:+91613644 | Msa0437360:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 3_2:+91615024 | Msa0437360:CDS |
| GCCCACGAGAATTTGTAACT+TGG | 0.511061 | 3_2:+91615723 | Msa0437360:exon |
| GGTCGGCTAGTCTTCGGTAA+AGG | 0.515798 | 3_2:-91613548 | None:intergenic |
| TGAGGTTGAACGTGTTTATG+AGG | 0.516026 | 3_2:+91614948 | Msa0437360:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.519103 | 3_2:-91613464 | None:intergenic |
| TGTTAGTTATGATTCTAGGT+TGG | 0.519722 | 3_2:+91615302 | Msa0437360:CDS |
| ATAGGAGGGAATGTTCTTGT+GGG | 0.520788 | 3_2:+91616032 | Msa0437360:three_prime_UTR |
| AAGATGAAGACAAAATTGAC+TGG | 0.525053 | 3_2:+91614983 | Msa0437360:CDS |
| TTGTGGGCTTAAGGCAGGAT+AGG | 0.526744 | 3_2:+91616048 | Msa0437360:three_prime_UTR |
| TACTTGTTCTTAGCAGGAGG+AGG | 0.531968 | 3_2:-91614670 | None:intergenic |
| TGGGACTGGTAATGTTAAAG+AGG | 0.532622 | 3_2:+91615143 | Msa0437360:CDS |
| AGATAGCTCCGATTGGTCAC+CGG | 0.533726 | 3_2:-91615201 | None:intergenic |
| CCCACGAGAATTTGTAACTT+GGG | 0.533882 | 3_2:+91615724 | Msa0437360:exon |
| ATTTCCCGAATCCTAAAGAA+AGG | 0.537745 | 3_2:-91615414 | None:intergenic |
| TGCTTTGAATGACCTTGGTG+AGG | 0.538207 | 3_2:+91614930 | Msa0437360:CDS |
| TCACCGGGGTGATCTTCTTG+AGG | 0.539174 | 3_2:-91615185 | None:intergenic |
| TTGGAGAAAGGTCAATTGGA+TGG | 0.539563 | 3_2:+91615453 | Msa0437360:CDS |
| AGAAAAGCACTTACAGCTTG+TGG | 0.542366 | 3_2:-91615537 | None:intergenic |
| AAAGAGGTTTATAGAGTGTG+GGG | 0.547043 | 3_2:+91615159 | Msa0437360:CDS |
| GAAGCTCTCAAGAGCTGCAG+AGG | 0.547848 | 3_2:+91615390 | Msa0437360:CDS |
| AGCTGAGCTTCCAAATAAGA+AGG | 0.548369 | 3_2:+91613521 | Msa0437360:CDS |
| GATCTTGTGTCCAAAGTGAA+AGG | 0.549809 | 3_2:+91614613 | Msa0437360:CDS |
| TCGGAGAAGTCTTCCTCCGC+CGG | 0.551873 | 3_2:-91613475 | None:intergenic |
| ACTGCATCCGAATCATCTCC+TGG | 0.552993 | 3_2:+91615660 | Msa0437360:CDS |
| AGAAATGGTAAGTTTCGCGT+TGG | 0.553517 | 3_2:-91615104 | None:intergenic |
| TTACAGCTTGTGGTGAAGGT+TGG | 0.556374 | 3_2:-91615527 | None:intergenic |
| TAATAAAATTGTTTAAGGAG+TGG | 0.559489 | 3_2:+91615268 | Msa0437360:CDS |
| TTCAATACTGTATGAATACC+AGG | 0.559830 | 3_2:-91615678 | None:intergenic |
| TCCCAAGTTACAAATTCTCG+TGG | 0.560694 | 3_2:-91615725 | None:intergenic |
| TTGAACCAGTATATAATCGA+AGG | 0.561352 | 3_2:+91613603 | Msa0437360:CDS |
| ATTGGTTGCAGATAATGGAA+TGG | 0.561950 | 3_2:+91614539 | Msa0437360:intron |
| AATAGGAGGGAATGTTCTTG+TGG | 0.564209 | 3_2:+91616031 | Msa0437360:three_prime_UTR |
| AGCTGAGTTGATGCTTAAGA+AGG | 0.568467 | 3_2:+91615059 | Msa0437360:CDS |
| TGGTAAGTTTCGCGTTGGCG+CGG | 0.569478 | 3_2:-91615099 | None:intergenic |
| CTGAAAGTGCGGCCTCTAAG+TGG | 0.571070 | 3_2:-91615485 | None:intergenic |
| ATGTCTATGTATATGAGGCT+AGG | 0.571867 | 3_2:+91614811 | Msa0437360:CDS |
| TAGATTCCATCATGCATTCG+AGG | 0.573744 | 3_2:+91613683 | Msa0437360:CDS |
| TTATCAAATCATCACTAGCT+CGG | 0.573776 | 3_2:-91615829 | None:intergenic |
| CATGGACAAGGAAGCTGTGT+CGG | 0.574022 | 3_2:+91615359 | Msa0437360:CDS |
| CATGAGCTCAGTCCAATAGG+AGG | 0.577937 | 3_2:+91616017 | Msa0437360:three_prime_UTR |
| CTGGTTCAACGTCTGCGACA+CGG | 0.577943 | 3_2:-91613589 | None:intergenic |
| ACCGTCGAAAGTTCCTCAGT+TGG | 0.578763 | 3_2:+91614837 | Msa0437360:CDS |
| ACGACTATGCACGGCTGCGA+CGG | 0.581337 | 3_2:+91613497 | Msa0437360:CDS |
| TAGAAGGCTTAATGATATGG+AGG | 0.581977 | 3_2:+91615242 | Msa0437360:CDS |
| GAGGCCGCACTTTCAGAAGT+CGG | 0.583270 | 3_2:+91615492 | Msa0437360:CDS |
| ACCAACTGAGGAACTTTCGA+CGG | 0.585028 | 3_2:-91614838 | None:intergenic |
| CATAATAAGATAGCTCCGAT+TGG | 0.585163 | 3_2:-91615208 | None:intergenic |
| GCGATACCTCGAATGCATGA+TGG | 0.585983 | 3_2:-91613689 | None:intergenic |
| GTGTACTTGTTCTTAGCAGG+AGG | 0.589015 | 3_2:-91614673 | None:intergenic |
| TGGTTAATGTTATGAAGGAG+AGG | 0.593769 | 3_2:+91614857 | Msa0437360:CDS |
| ATCACATGTGTATCATATGT+AGG | 0.598621 | 3_2:+91615795 | Msa0437360:three_prime_UTR |
| TTCATAACATTAACCAACTG+AGG | 0.600464 | 3_2:-91614850 | None:intergenic |
| AGAAGGCTTAATGATATGGA+GGG | 0.604451 | 3_2:+91615243 | Msa0437360:CDS |
| GCTAAGAACAAGTACACATA+CGG | 0.606065 | 3_2:+91614679 | Msa0437360:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.614146 | 3_2:+91614705 | Msa0437360:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 3_2:+91613459 | Msa0437360:CDS |
| GGCTTACTTGAGTCAAAACA+TGG | 0.616784 | 3_2:+91615341 | Msa0437360:CDS |
| CCCAAGTTACAAATTCTCGT+GGG | 0.622015 | 3_2:-91615724 | None:intergenic |
| CTTGAGTCAAAACATGGACA+AGG | 0.623542 | 3_2:+91615347 | Msa0437360:CDS |
| AAGAGGTTTATAGAGTGTGG+GGG | 0.627275 | 3_2:+91615160 | Msa0437360:CDS |
| AGTAAACAAAATCCCTGCTG+TGG | 0.630028 | 3_2:+91613409 | Msa0437360:five_prime_UTR |
| TGAACCAGTATATAATCGAA+GGG | 0.630767 | 3_2:+91613604 | Msa0437360:CDS |
| TCGCAGCCGTGCATAGTCGT+CGG | 0.630947 | 3_2:-91613494 | None:intergenic |
| CTAGCCGACCTAGAAAAGAC+CGG | 0.635101 | 3_2:+91613561 | Msa0437360:CDS |
| ACTTCTCCGACGACTATGCA+CGG | 0.643853 | 3_2:+91613488 | Msa0437360:CDS |
| TGAGTTGATGCTTAAGAAGG+TGG | 0.644162 | 3_2:+91615062 | Msa0437360:CDS |
| ATGAGCTCAGTCCAATAGGA+GGG | 0.651102 | 3_2:+91616018 | Msa0437360:three_prime_UTR |
| TAATGGAATGGATGATGATG+AGG | 0.652324 | 3_2:+91614551 | Msa0437360:CDS |
| CAAGGAACTAATGCTAGACA+AGG | 0.652550 | 3_2:+91614723 | Msa0437360:CDS |
| GACCCTCAAGAAGATCACCC+CGG | 0.654594 | 3_2:+91615182 | Msa0437360:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 3_2:-91615496 | None:intergenic |
| TCTATGATCGAACCACAGCA+GGG | 0.676707 | 3_2:-91613421 | None:intergenic |
| GCCGACCTAGAAAAGACCGG+AGG | 0.743237 | 3_2:+91613564 | Msa0437360:CDS |
| TGTGTCCAAAGTGAAAGGAG+TGG | 0.764655 | 3_2:+91614618 | Msa0437360:CDS |
| AAACACGTTCAACCTCACCA+AGG | 0.766259 | 3_2:-91614942 | None:intergenic |
| ATAGCTCCGATTGGTCACCG+GGG | 0.806286 | 3_2:-91615199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGATGTTTTGAT+TGG | + | chr3_2:91614521-91614540 | Msa0437360:intron | 15.0% |
| !! | TCAACATGAATCAAAATTTA+GGG | - | chr3_2:91613737-91613756 | None:intergenic | 20.0% |
| !! | TTGTTAATAAATGAATCAAC+TGG | + | chr3_2:91613988-91614007 | Msa0437360:intron | 20.0% |
| !! | AGATTTAAAGATTAACAAGT+TGG | + | chr3_2:91614369-91614388 | Msa0437360:intron | 20.0% |
| !! | TAATAAAATTGTTTAAGGAG+TGG | + | chr3_2:91615268-91615287 | Msa0437360:CDS | 20.0% |
| !! | AATAAAATTGTTTAAGGAGT+GGG | + | chr3_2:91615269-91615288 | Msa0437360:CDS | 20.0% |
| !! | TTAAAAAAGACATAAACTGT+CGG | + | chr3_2:91615958-91615977 | Msa0437360:three_prime_UTR | 20.0% |
| !!! | TTTACTTGTTGTTTCTTGAA+GGG | - | chr3_2:91613395-91613414 | None:intergenic | 25.0% |
| !! | AAATTTAGGGTGGAAAAAAT+TGG | - | chr3_2:91613724-91613743 | None:intergenic | 25.0% |
| ! | CTCAACATGAATCAAAATTT+AGG | - | chr3_2:91613738-91613757 | None:intergenic | 25.0% |
| ! | AAAATTAGTTAGAGTCGTTT+AGG | - | chr3_2:91613834-91613853 | None:intergenic | 25.0% |
| ! | ACTAATTATGTTCTGTGTAA+TGG | + | chr3_2:91613952-91613971 | Msa0437360:intron | 25.0% |
| ! | TTATATAGTAGTCACAAGAT+CGG | + | chr3_2:91614053-91614072 | Msa0437360:intron | 25.0% |
| !!! | TTTACCATCTTTTTTACGAT+AGG | - | chr3_2:91614211-91614230 | None:intergenic | 25.0% |
| !! | TAAAGATTAACAAGTTGGAT+AGG | + | chr3_2:91614374-91614393 | Msa0437360:intron | 25.0% |
| !! | AAAGATTAACAAGTTGGATA+GGG | + | chr3_2:91614375-91614394 | Msa0437360:intron | 25.0% |
| ! | TAGTATATGATAGAACACTA+TGG | + | chr3_2:91614401-91614420 | Msa0437360:intron | 25.0% |
| !! | TGAGGCAAATTAATTTTTCA+TGG | + | chr3_2:91614569-91614588 | Msa0437360:CDS | 25.0% |
| !! | GAGGCAAATTAATTTTTCAT+GGG | + | chr3_2:91614570-91614589 | Msa0437360:CDS | 25.0% |
| !!! | ATTGTCTCATTTTGATAAGA+TGG | + | chr3_2:91614747-91614766 | Msa0437360:CDS | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | + | chr3_2:91614757-91614776 | Msa0437360:CDS | 25.0% |
| ! | CATATACATAGACATCAAAT+TGG | - | chr3_2:91614806-91614825 | None:intergenic | 25.0% |
| ! | ATTTGATGTCTATGTATATG+AGG | + | chr3_2:91614806-91614825 | Msa0437360:CDS | 25.0% |
| !! | CTGAATTTACATACATTTTG+TGG | + | chr3_2:91614893-91614912 | Msa0437360:CDS | 25.0% |
| ! | GGGCATAATAAAATTGTTTA+AGG | + | chr3_2:91615263-91615282 | Msa0437360:CDS | 25.0% |
| !!! | AATGTTCATGGTGTTTTTAT+TGG | + | chr3_2:91615434-91615453 | Msa0437360:CDS | 25.0% |
| !!! | AGTAATGCAAGTTTTAATAG+AGG | - | chr3_2:91615643-91615662 | None:intergenic | 25.0% |
| !!! | GTGATTGTTTTTTCAATGAT+GGG | - | chr3_2:91615780-91615799 | None:intergenic | 25.0% |
| !!! | TGTGATTGTTTTTTCAATGA+TGG | - | chr3_2:91615781-91615800 | None:intergenic | 25.0% |
| ! | TATTTCCTTAAGATAAGTAC+TGG | + | chr3_2:91615863-91615882 | Msa0437360:three_prime_UTR | 25.0% |
| !!! | TTTCTTGAAGGGTTTTGTTA+GGG | - | chr3_2:91613384-91613403 | None:intergenic | 30.0% |
| !! | GTTTACTTGTTGTTTCTTGA+AGG | - | chr3_2:91613396-91613415 | None:intergenic | 30.0% |
| TAAAGGTTTGCCTTCTTATT+TGG | - | chr3_2:91613534-91613553 | None:intergenic | 30.0% | |
| TTGAACCAGTATATAATCGA+AGG | + | chr3_2:91613603-91613622 | Msa0437360:CDS | 30.0% | |
| TGAACCAGTATATAATCGAA+GGG | + | chr3_2:91613604-91613623 | Msa0437360:CDS | 30.0% | |
| ACATGAATCAAAATTTAGGG+TGG | - | chr3_2:91613734-91613753 | None:intergenic | 30.0% | |
| TGATGATAAACTATGAAGCA+TGG | - | chr3_2:91613912-91613931 | None:intergenic | 30.0% | |
| !!! | AATTAGTTTTGCCTTGTCTA+TGG | - | chr3_2:91613939-91613958 | None:intergenic | 30.0% |
| !!! | CGCTTATTTTATTCTCATGT+TGG | - | chr3_2:91614105-91614124 | None:intergenic | 30.0% |
| ATGACAATATTAGAGAGAGT+TGG | + | chr3_2:91614178-91614197 | Msa0437360:intron | 30.0% | |
| TGACAATATTAGAGAGAGTT+GGG | + | chr3_2:91614179-91614198 | Msa0437360:intron | 30.0% | |
| ! | AGATGGTAAAAGTTTGACTT+AGG | + | chr3_2:91614221-91614240 | Msa0437360:intron | 30.0% |
| !! | TTTTGATTGGTTGCAGATAA+TGG | + | chr3_2:91614534-91614553 | Msa0437360:intron | 30.0% |
| TTCATAACATTAACCAACTG+AGG | - | chr3_2:91614853-91614872 | None:intergenic | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | + | chr3_2:91614852-91614871 | Msa0437360:CDS | 30.0% | |
| ! | ACATACATTTTGTGGATGAA+TGG | + | chr3_2:91614901-91614920 | Msa0437360:CDS | 30.0% |
| AAGATGAAGACAAAATTGAC+TGG | + | chr3_2:91614983-91615002 | Msa0437360:CDS | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | - | chr3_2:91615023-91615042 | None:intergenic | 30.0% |
| TTAAAGAGGTTTATAGAGTG+TGG | + | chr3_2:91615157-91615176 | Msa0437360:CDS | 30.0% | |
| TAAAGAGGTTTATAGAGTGT+GGG | + | chr3_2:91615158-91615177 | Msa0437360:CDS | 30.0% | |
| TTATGCTTTCTAACCTTAGA+AGG | + | chr3_2:91615226-91615245 | Msa0437360:CDS | 30.0% | |
| TGTTAGTTATGATTCTAGGT+TGG | + | chr3_2:91615302-91615321 | Msa0437360:CDS | 30.0% | |
| !! | ATGGTGTTTTTATTGGAGAA+AGG | + | chr3_2:91615441-91615460 | Msa0437360:CDS | 30.0% |
| TTTATTGGAGAAAGGTCAAT+TGG | + | chr3_2:91615449-91615468 | Msa0437360:CDS | 30.0% | |
| ATGAGTTAAGCAAGATTCTT+AGG | + | chr3_2:91615598-91615617 | Msa0437360:CDS | 30.0% | |
| TTCAATACTGTATGAATACC+AGG | - | chr3_2:91615681-91615700 | None:intergenic | 30.0% | |
| ! | TGGTATTCATACAGTATTGA+AGG | + | chr3_2:91615680-91615699 | Msa0437360:CDS | 30.0% |
| ATCACATGTGTATCATATGT+AGG | + | chr3_2:91615795-91615814 | Msa0437360:three_prime_UTR | 30.0% | |
| TTATCAAATCATCACTAGCT+CGG | - | chr3_2:91615832-91615851 | None:intergenic | 30.0% | |
| ! | CTAGTGATGATTTGATAATC+AGG | + | chr3_2:91615834-91615853 | Msa0437360:three_prime_UTR | 30.0% |
| GAAAACCAGTACTTATCTTA+AGG | - | chr3_2:91615871-91615890 | None:intergenic | 30.0% | |
| !!! | TCTAGTTGTTTTGTTTGCTA+TGG | + | chr3_2:91615918-91615937 | Msa0437360:three_prime_UTR | 30.0% |
| !!! | GTTTCTTGAAGGGTTTTGTT+AGG | - | chr3_2:91613385-91613404 | None:intergenic | 35.0% |
| !! | AGAGACTCTGAGATGAATTA+CGG | + | chr3_2:91613441-91613460 | Msa0437360:exon | 35.0% |
| CTTTCCCTTCGATTATATAC+TGG | - | chr3_2:91613611-91613630 | None:intergenic | 35.0% | |
| ATCATCACAATCCATAGACA+AGG | + | chr3_2:91613925-91613944 | Msa0437360:intron | 35.0% | |
| AGCACCTATCGTAAAAAAGA+TGG | + | chr3_2:91614204-91614223 | Msa0437360:intron | 35.0% | |
| ! | TGGTAAAAGTTTGACTTAGG+TGG | + | chr3_2:91614224-91614243 | Msa0437360:intron | 35.0% |
| ! | GACCTGTAGATTTTGTAGTA+CGG | + | chr3_2:91614266-91614285 | Msa0437360:intron | 35.0% |
| ! | CAAGTCTTATCCCACTAATT+GGG | - | chr3_2:91614451-91614470 | None:intergenic | 35.0% |
| !! | ATTGGTTGCAGATAATGGAA+TGG | + | chr3_2:91614539-91614558 | Msa0437360:intron | 35.0% |
| ! | TAATGGAATGGATGATGATG+AGG | + | chr3_2:91614551-91614570 | Msa0437360:CDS | 35.0% |
| TATGTGTACTTGTTCTTAGC+AGG | - | chr3_2:91614679-91614698 | None:intergenic | 35.0% | |
| GCTAAGAACAAGTACACATA+CGG | + | chr3_2:91614679-91614698 | Msa0437360:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | + | chr3_2:91614705-91614724 | Msa0437360:CDS | 35.0% | |
| ATGTCTATGTATATGAGGCT+AGG | + | chr3_2:91614811-91614830 | Msa0437360:CDS | 35.0% | |
| TGGTTAATGTTATGAAGGAG+AGG | + | chr3_2:91614857-91614876 | Msa0437360:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | + | chr3_2:91615024-91615043 | Msa0437360:CDS | 35.0% | |
| AAAGAGGTTTATAGAGTGTG+GGG | + | chr3_2:91615159-91615178 | Msa0437360:CDS | 35.0% | |
| CATAATAAGATAGCTCCGAT+TGG | - | chr3_2:91615211-91615230 | None:intergenic | 35.0% | |
| CCATATCATTAAGCCTTCTA+AGG | - | chr3_2:91615242-91615261 | None:intergenic | 35.0% | |
| CCTTAGAAGGCTTAATGATA+TGG | + | chr3_2:91615239-91615258 | Msa0437360:CDS | 35.0% | |
| TAGAAGGCTTAATGATATGG+AGG | + | chr3_2:91615242-91615261 | Msa0437360:CDS | 35.0% | |
| AGAAGGCTTAATGATATGGA+GGG | + | chr3_2:91615243-91615262 | Msa0437360:CDS | 35.0% | |
| GGCATGTTAGTTATGATTCT+AGG | + | chr3_2:91615298-91615317 | Msa0437360:CDS | 35.0% | |
| !! | AGTTATGATTCTAGGTTGGT+TGG | + | chr3_2:91615306-91615325 | Msa0437360:CDS | 35.0% |
| ATTTCCCGAATCCTAAAGAA+AGG | - | chr3_2:91615417-91615436 | None:intergenic | 35.0% | |
| GAAGAAGAAACAGATCTTGA+TGG | + | chr3_2:91615570-91615589 | Msa0437360:CDS | 35.0% | |
| ATGAATACCAGGAGATGATT+CGG | - | chr3_2:91615670-91615689 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTCAATGATGGGTG+TGG | - | chr3_2:91615775-91615794 | None:intergenic | 35.0% |
| AAAAAGACATAAACTGTCGG+TGG | + | chr3_2:91615961-91615980 | Msa0437360:three_prime_UTR | 35.0% | |
| AGTAAACAAAATCCCTGCTG+TGG | + | chr3_2:91613409-91613428 | Msa0437360:five_prime_UTR | 40.0% | |
| ! | AATTACGGCCGTTTGATTTC+CGG | + | chr3_2:91613456-91613475 | Msa0437360:CDS | 40.0% |
| AGCTGAGCTTCCAAATAAGA+AGG | + | chr3_2:91613521-91613540 | Msa0437360:CDS | 40.0% | |
| ATAATCGAAGGGAAAGCCTT+AGG | + | chr3_2:91613615-91613634 | Msa0437360:CDS | 40.0% | |
| ! | CTCGAGTTCATCTTTTCCTA+AGG | - | chr3_2:91613634-91613653 | None:intergenic | 40.0% |
| TAGATTCCATCATGCATTCG+AGG | + | chr3_2:91613683-91613702 | Msa0437360:CDS | 40.0% | |
| !! | GTAACATCGACTCTGATTGA+AGG | + | chr3_2:91613773-91613792 | Msa0437360:intron | 40.0% |
| ! | TAAAGTACCACTCAAGCTGA+AGG | + | chr3_2:91614025-91614044 | Msa0437360:intron | 40.0% |
| ! | AAAGTACCACTCAAGCTGAA+GGG | + | chr3_2:91614026-91614045 | Msa0437360:intron | 40.0% |
| ACAAGATCGGTGATGTTGTA+TGG | + | chr3_2:91614066-91614085 | Msa0437360:intron | 40.0% | |
| ! | AAGTTTGACTTAGGTGGTCT+AGG | + | chr3_2:91614230-91614249 | Msa0437360:intron | 40.0% |
| CTCCGTACTACAAAATCTAC+AGG | - | chr3_2:91614271-91614290 | None:intergenic | 40.0% | |
| TGATTTGACTAACCTCCATC+TGG | - | chr3_2:91614300-91614319 | None:intergenic | 40.0% | |
| ! | GAGGTTAGTCAAATCACTTG+AGG | + | chr3_2:91614304-91614323 | Msa0437360:intron | 40.0% |
| CTTATCCCACTAATTGGGAT+CGG | - | chr3_2:91614446-91614465 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATCCCACTAAT+TGG | - | chr3_2:91614452-91614471 | None:intergenic | 40.0% |
| CCAATTAGTGGGATAAGACT+TGG | + | chr3_2:91614449-91614468 | Msa0437360:intron | 40.0% | |
| GATCTTGTGTCCAAAGTGAA+AGG | + | chr3_2:91614613-91614632 | Msa0437360:CDS | 40.0% | |
| TTCAACCACTCCTTTCACTT+TGG | - | chr3_2:91614626-91614645 | None:intergenic | 40.0% | |
| CAAGGAACTAATGCTAGACA+AGG | + | chr3_2:91614723-91614742 | Msa0437360:CDS | 40.0% | |
| TGAGGTTGAACGTGTTTATG+AGG | + | chr3_2:91614948-91614967 | Msa0437360:CDS | 40.0% | |
| !! | AGCTGAGTTGATGCTTAAGA+AGG | + | chr3_2:91615059-91615078 | Msa0437360:CDS | 40.0% |
| !! | TGAGTTGATGCTTAAGAAGG+TGG | + | chr3_2:91615062-91615081 | Msa0437360:CDS | 40.0% |
| AGAAATGGTAAGTTTCGCGT+TGG | - | chr3_2:91615107-91615126 | None:intergenic | 40.0% | |
| CATAAAGGCTCAGCAAGAAA+TGG | - | chr3_2:91615122-91615141 | None:intergenic | 40.0% | |
| ! | TGGGACTGGTAATGTTAAAG+AGG | + | chr3_2:91615143-91615162 | Msa0437360:CDS | 40.0% |
| AAGAGGTTTATAGAGTGTGG+GGG | + | chr3_2:91615160-91615179 | Msa0437360:CDS | 40.0% | |
| TGTTTAAGGAGTGGGAATCT+AGG | + | chr3_2:91615277-91615296 | Msa0437360:CDS | 40.0% | |
| GGCTTACTTGAGTCAAAACA+TGG | + | chr3_2:91615341-91615360 | Msa0437360:CDS | 40.0% | |
| CTTGAGTCAAAACATGGACA+AGG | + | chr3_2:91615347-91615366 | Msa0437360:CDS | 40.0% | |
| !! | GAGGACCTTTCTTTAGGATT+CGG | + | chr3_2:91615409-91615428 | Msa0437360:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+GGG | + | chr3_2:91615410-91615429 | Msa0437360:CDS | 40.0% |
| TAGGATTCGGGAAATGTTCA+TGG | + | chr3_2:91615422-91615441 | Msa0437360:CDS | 40.0% | |
| TTGGAGAAAGGTCAATTGGA+TGG | + | chr3_2:91615453-91615472 | Msa0437360:CDS | 40.0% | |
| !! | AGAAAAGCACTTACAGCTTG+TGG | - | chr3_2:91615540-91615559 | None:intergenic | 40.0% |
| CCCAAGTTACAAATTCTCGT+GGG | - | chr3_2:91615727-91615746 | None:intergenic | 40.0% | |
| CCCACGAGAATTTGTAACTT+GGG | + | chr3_2:91615724-91615743 | Msa0437360:exon | 40.0% | |
| TCCCAAGTTACAAATTCTCG+TGG | - | chr3_2:91615728-91615747 | None:intergenic | 40.0% | |
| ACAAGAACATTCCCTCCTAT+TGG | - | chr3_2:91616032-91616051 | None:intergenic | 40.0% | |
| AATAGGAGGGAATGTTCTTG+TGG | + | chr3_2:91616031-91616050 | Msa0437360:three_prime_UTR | 40.0% | |
| ATAGGAGGGAATGTTCTTGT+GGG | + | chr3_2:91616032-91616051 | Msa0437360:three_prime_UTR | 40.0% | |
| TCTATGATCGAACCACAGCA+GGG | - | chr3_2:91613424-91613443 | None:intergenic | 45.0% | |
| !! | TTTCTAGGTCGGCTAGTCTT+CGG | - | chr3_2:91613557-91613576 | None:intergenic | 45.0% |
| TACGATACTTTCGAAGCTCC+TGG | - | chr3_2:91613665-91613684 | None:intergenic | 45.0% | |
| AATTGTCCCTTCAGCTTGAG+TGG | - | chr3_2:91614035-91614054 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | + | chr3_2:91614136-91614155 | Msa0437360:intron | 45.0% | |
| AGTCAAATCACTTGAGGCAG+AGG | + | chr3_2:91614310-91614329 | Msa0437360:intron | 45.0% | |
| ACTAATTGGGATCGGCTACA+TGG | - | chr3_2:91614438-91614457 | None:intergenic | 45.0% | |
| ATGTAGCCGATCCCAATTAG+TGG | + | chr3_2:91614437-91614456 | Msa0437360:intron | 45.0% | |
| TGTAGCCGATCCCAATTAGT+GGG | + | chr3_2:91614438-91614457 | Msa0437360:intron | 45.0% | |
| ! | AGTGGGATAAGACTTGGTTG+TGG | + | chr3_2:91614455-91614474 | Msa0437360:intron | 45.0% |
| TGTGTCCAAAGTGAAAGGAG+TGG | + | chr3_2:91614618-91614637 | Msa0437360:CDS | 45.0% | |
| TACTTGTTCTTAGCAGGAGG+AGG | - | chr3_2:91614673-91614692 | None:intergenic | 45.0% | |
| GTGTACTTGTTCTTAGCAGG+AGG | - | chr3_2:91614676-91614695 | None:intergenic | 45.0% | |
| ACCAACTGAGGAACTTTCGA+CGG | - | chr3_2:91614841-91614860 | None:intergenic | 45.0% | |
| !! | TGTGCTGCTTTGAATGACCT+TGG | + | chr3_2:91614925-91614944 | Msa0437360:CDS | 45.0% |
| ! | TGCTTTGAATGACCTTGGTG+AGG | + | chr3_2:91614930-91614949 | Msa0437360:CDS | 45.0% |
| AAACACGTTCAACCTCACCA+AGG | - | chr3_2:91614945-91614964 | None:intergenic | 45.0% | |
| TTCTTGCTGAGCCTTTATGC+TGG | + | chr3_2:91615123-91615142 | Msa0437360:CDS | 45.0% | |
| TCTTGCTGAGCCTTTATGCT+GGG | + | chr3_2:91615124-91615143 | Msa0437360:CDS | 45.0% | |
| CATTACCAGTCCCAGCATAA+AGG | - | chr3_2:91615137-91615156 | None:intergenic | 45.0% | |
| TTACAGCTTGTGGTGAAGGT+TGG | - | chr3_2:91615530-91615549 | None:intergenic | 45.0% | |
| GTTACAAATTCTCGTGGGCT+TGG | - | chr3_2:91615722-91615741 | None:intergenic | 45.0% | |
| GCCCACGAGAATTTGTAACT+TGG | + | chr3_2:91615723-91615742 | Msa0437360:exon | 45.0% | |
| ATGGGTGTGGTGTGTATTCA+TGG | - | chr3_2:91615762-91615781 | None:intergenic | 45.0% | |
| ATGAGCTCAGTCCAATAGGA+GGG | + | chr3_2:91616018-91616037 | Msa0437360:three_prime_UTR | 45.0% | |
| GGAATGTTCTTGTGGGCTTA+AGG | + | chr3_2:91616039-91616058 | Msa0437360:three_prime_UTR | 45.0% | |
| CTCTATGATCGAACCACAGC+AGG | - | chr3_2:91613425-91613444 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | - | chr3_2:91613467-91613486 | None:intergenic | 50.0% | |
| ACTTCTCCGACGACTATGCA+CGG | + | chr3_2:91613488-91613507 | Msa0437360:CDS | 50.0% | |
| CTAGCCGACCTAGAAAAGAC+CGG | + | chr3_2:91613561-91613580 | Msa0437360:CDS | 50.0% | |
| ! | TCCTCCGGTCTTTTCTAGGT+CGG | - | chr3_2:91613568-91613587 | None:intergenic | 50.0% |
| GCGATACCTCGAATGCATGA+TGG | - | chr3_2:91613692-91613711 | None:intergenic | 50.0% | |
| GTCGTTTAGGTGTCAGACAC+CGG | - | chr3_2:91613821-91613840 | None:intergenic | 50.0% | |
| AAATAAGCGTAGCCGAGACG+AGG | + | chr3_2:91614116-91614135 | Msa0437360:intron | 50.0% | |
| CCAACACAACATCCTCGTCT+CGG | - | chr3_2:91614131-91614150 | None:intergenic | 50.0% | |
| AGTACGGAGAGTAGACCAGA+TGG | + | chr3_2:91614282-91614301 | Msa0437360:intron | 50.0% | |
| ACCGTCGAAAGTTCCTCAGT+TGG | + | chr3_2:91614837-91614856 | Msa0437360:CDS | 50.0% | |
| ! | AGATAGCTCCGATTGGTCAC+CGG | - | chr3_2:91615204-91615223 | None:intergenic | 50.0% |
| CATGGACAAGGAAGCTGTGT+CGG | + | chr3_2:91615359-91615378 | Msa0437360:CDS | 50.0% | |
| GCTGCAGAGGACCTTTCTTT+AGG | + | chr3_2:91615403-91615422 | Msa0437360:CDS | 50.0% | |
| !! | TGGTGCTATGAGCCACTTAG+AGG | + | chr3_2:91615473-91615492 | Msa0437360:CDS | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | - | chr3_2:91615499-91615518 | None:intergenic | 50.0% |
| GCACTTACAGCTTGTGGTGA+AGG | - | chr3_2:91615534-91615553 | None:intergenic | 50.0% | |
| ACTGCATCCGAATCATCTCC+TGG | + | chr3_2:91615660-91615679 | Msa0437360:CDS | 50.0% | |
| CTGCATGAGCTCAGTCCAAT+AGG | + | chr3_2:91616014-91616033 | Msa0437360:three_prime_UTR | 50.0% | |
| CATGAGCTCAGTCCAATAGG+AGG | + | chr3_2:91616017-91616036 | Msa0437360:three_prime_UTR | 50.0% | |
| TGTTCTTGTGGGCTTAAGGC+AGG | + | chr3_2:91616043-91616062 | Msa0437360:three_prime_UTR | 50.0% | |
| TTGTGGGCTTAAGGCAGGAT+AGG | + | chr3_2:91616048-91616067 | Msa0437360:three_prime_UTR | 50.0% | |
| ! | TACGGCCGTTTGATTTCCGG+CGG | + | chr3_2:91613459-91613478 | Msa0437360:CDS | 55.0% |
| !! | GGTCGGCTAGTCTTCGGTAA+AGG | - | chr3_2:91613551-91613570 | None:intergenic | 55.0% |
| ! | CGGTTCCTCCGGTCTTTTCT+AGG | - | chr3_2:91613572-91613591 | None:intergenic | 55.0% |
| CTGGTTCAACGTCTGCGACA+CGG | - | chr3_2:91613592-91613611 | None:intergenic | 55.0% | |
| TGAACTCGAGAGATGCGTCC+AGG | + | chr3_2:91613644-91613663 | Msa0437360:CDS | 55.0% | |
| GTTCCGTGTCCAACACTTGC+CGG | + | chr3_2:91613799-91613818 | Msa0437360:intron | 55.0% | |
| !! | ACACCGGCAAGTGTTGGACA+CGG | - | chr3_2:91613805-91613824 | None:intergenic | 55.0% |
| TGTCAGACACCGGCAAGTGT+TGG | - | chr3_2:91613811-91613830 | None:intergenic | 55.0% | |
| CCGAGACGAGGATGTTGTGT+TGG | + | chr3_2:91614128-91614147 | Msa0437360:intron | 55.0% | |
| ACGGAGAGTAGACCAGATGG+AGG | + | chr3_2:91614285-91614304 | Msa0437360:intron | 55.0% | |
| ! | TGGTAAGTTTCGCGTTGGCG+CGG | - | chr3_2:91615102-91615121 | None:intergenic | 55.0% |
| CTGAGCCTTTATGCTGGGAC+TGG | + | chr3_2:91615129-91615148 | Msa0437360:CDS | 55.0% | |
| GACCCTCAAGAAGATCACCC+CGG | + | chr3_2:91615182-91615201 | Msa0437360:CDS | 55.0% | |
| CACCGGGGTGATCTTCTTGA+GGG | - | chr3_2:91615187-91615206 | None:intergenic | 55.0% | |
| TCACCGGGGTGATCTTCTTG+AGG | - | chr3_2:91615188-91615207 | None:intergenic | 55.0% | |
| AGATCACCCCGGTGACCAAT+CGG | + | chr3_2:91615193-91615212 | Msa0437360:CDS | 55.0% | |
| ! | ATAGCTCCGATTGGTCACCG+GGG | - | chr3_2:91615202-91615221 | None:intergenic | 55.0% |
| ! | GATAGCTCCGATTGGTCACC+GGG | - | chr3_2:91615203-91615222 | None:intergenic | 55.0% |
| !! | GTTGGTTGGTGTTGCAGTGC+AGG | + | chr3_2:91615320-91615339 | Msa0437360:CDS | 55.0% |
| ! | GGAAGCTGTGTCGGTCTTTG+AGG | + | chr3_2:91615368-91615387 | Msa0437360:CDS | 55.0% |
| GAAGCTCTCAAGAGCTGCAG+AGG | + | chr3_2:91615390-91615409 | Msa0437360:CDS | 55.0% | |
| ! | CTGAAAGTGCGGCCTCTAAG+TGG | - | chr3_2:91615488-91615507 | None:intergenic | 55.0% |
| GAGGCCGCACTTTCAGAAGT+CGG | + | chr3_2:91615492-91615511 | Msa0437360:CDS | 55.0% | |
| TCGGAGAAGTCTTCCTCCGC+CGG | - | chr3_2:91613478-91613497 | None:intergenic | 60.0% | |
| TCGCAGCCGTGCATAGTCGT+CGG | - | chr3_2:91613497-91613516 | None:intergenic | 60.0% | |
| ACGACTATGCACGGCTGCGA+CGG | + | chr3_2:91613497-91613516 | Msa0437360:CDS | 60.0% | |
| GCCGACCTAGAAAAGACCGG+AGG | + | chr3_2:91613564-91613583 | Msa0437360:CDS | 60.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | + | chr3_2:91613462-91613481 | Msa0437360:CDS | 65.0% |
| CGTCTGCGACACGGTTCCTC+CGG | - | chr3_2:91613583-91613602 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 91613378 | 91616074 | 91613378 | ID=Msa0437360;Name=Msa0437360 |
| chr3_2 | mRNA | 91613378 | 91616074 | 91613378 | ID=Msa0437360-mRNA-1;Parent=Msa0437360;Name=Msa0437360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|334|480 |
| chr3_2 | exon | 91613378 | 91613704 | 91613378 | ID=Msa0437360-mRNA-1:exon:27330;Parent=Msa0437360-mRNA-1 |
| chr3_2 | exon | 91614550 | 91616074 | 91614550 | ID=Msa0437360-mRNA-1:exon:27331;Parent=Msa0437360-mRNA-1 |
| chr3_2 | five_prime_UTR | 91613378 | 91613452 | 91613378 | ID=Msa0437360-mRNA-1:five_prime_utr;Parent=Msa0437360-mRNA-1 |
| chr3_2 | CDS | 91613453 | 91613704 | 91613453 | ID=Msa0437360-mRNA-1:cds;Parent=Msa0437360-mRNA-1 |
| chr3_2 | CDS | 91614550 | 91615740 | 91614550 | ID=Msa0437360-mRNA-1:cds;Parent=Msa0437360-mRNA-1 |
| chr3_2 | three_prime_UTR | 91615741 | 91616074 | 91615741 | ID=Msa0437360-mRNA-1:three_prime_utr;Parent=Msa0437360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
