AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471240 MtrunA17_Chr3g0125981 83.784 370 59 1 1 369 1 370 0.0 655
Msa0471240 MtrunA17_Chr3g0126011 73.569 367 93 1 2 368 3 365 0.0 576
Msa0471240 MtrunA17_Chr3g0125991 73.297 367 94 1 2 368 3 365 0.0 569
Msa0471240 MtrunA17_Chr3g0125781 70.652 368 108 0 1 368 1 368 0.0 552
Msa0471240 MtrunA17_Chr1g0159321 71.745 361 92 2 17 367 28 388 0.0 537
Msa0471240 MtrunA17_Chr4g0045661 64.392 337 117 2 32 367 57 391 1.99e-160 455
Msa0471240 MtrunA17_Chr5g0406961 64.392 337 117 2 32 367 108 442 2.89e-160 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471240 AT1G43800.1 67.139 353 111 2 21 368 38 390 2.24e-178 501
Msa0471240 AT3G02630.1 62.130 338 124 2 32 367 59 394 1.41e-154 441
Msa0471240 AT3G02610.2 61.671 347 126 4 27 367 66 411 9.28e-154 439
Msa0471240 AT3G02610.1 61.671 347 126 4 27 367 64 409 1.03e-153 439
Msa0471240 AT2G43710.1 62.315 337 124 2 32 367 65 399 1.38e-153 438
Msa0471240 AT2G43710.2 62.315 337 124 2 32 367 65 399 1.46e-153 438
Msa0471240 AT3G02620.1 56.842 380 150 6 1 367 23 401 2.08e-151 433
Msa0471240 AT3G02620.2 56.842 380 150 6 1 367 26 404 2.18e-151 433
Msa0471240 AT5G16230.1 58.197 366 147 5 6 367 36 399 2.36e-151 432
Msa0471240 AT5G16240.1 57.808 365 139 4 6 367 40 392 2.50e-150 430
Msa0471240 AT5G16230.2 61.420 324 120 4 48 367 1 323 6.49e-145 413
Msa0471240 AT3G02620.3 61.350 326 119 4 48 367 1 325 1.80e-144 412

Find 111 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATATATAAGTAAAATT+TGG 0.134908 3_3:-73448620 Msa0471240:three_prime_UTR
TCGATCAAGTGAAGGCATTA+AGG 0.300188 3_3:-73450336 Msa0471240:CDS
CTCTTGCAGCCTCCTAATCT+TGG 0.308277 3_3:+73448783 None:intergenic
AAAACATATCTCTATCTTTC+GGG 0.321851 3_3:-73450115 Msa0471240:CDS
ATGGCAATGTGCACTCAATT+AGG 0.331509 3_3:-73450580 Msa0471240:CDS
GAGACATTGAGTATGTCTTT+TGG 0.340015 3_3:+73450494 None:intergenic
GGGTCGGGTTGATATGTTCA+TGG 0.349549 3_3:-73450095 Msa0471240:CDS
TTTAATATATAAACTAAAAC+TGG 0.353168 3_3:+73448511 None:intergenic
CAAAACATATCTCTATCTTT+CGG 0.357765 3_3:-73450116 Msa0471240:CDS
CTTGATTGGACGTTGGAGAT+TGG 0.360703 3_3:-73448869 Msa0471240:CDS
TCTATATATAAGTAAAATTT+GGG 0.365282 3_3:-73448619 Msa0471240:three_prime_UTR
GATAGCTTGGAGTTCTTGAT+TGG 0.365666 3_3:-73448883 Msa0471240:CDS
CCAACATTCCTCCACTGGTT+TGG 0.368196 3_3:+73450408 None:intergenic
TTGCTTATGGTGTAGGATAT+AGG 0.368907 3_3:-73449261 Msa0471240:intron
ACCATCATGCATCAAGTGTC+CGG 0.383908 3_3:+73448981 None:intergenic
AGTGTCCGGGCATTGTTATA+TGG 0.388397 3_3:+73448995 None:intergenic
GGGCTGTATGGACACGCTCT+TGG 0.392310 3_3:-73450171 Msa0471240:CDS
CGATCAAGTGAAGGCATTAA+GGG 0.400225 3_3:-73450335 Msa0471240:CDS
TTTCAAGTCATTAGAGAGTT+GGG 0.400750 3_3:-73450455 Msa0471240:CDS
ACAGAAAAGTGGCTCGCTCT+TGG 0.405583 3_3:+73449196 None:intergenic
AGATGAAACCTAAGTTTAGT+TGG 0.414064 3_3:-73448738 Msa0471240:CDS
TTTGGGACGGGGCCTTTAGA+TGG 0.414164 3_3:+73450530 None:intergenic
CATTGCCAACGTACCAATCA+TGG 0.428195 3_3:-73450246 Msa0471240:CDS
ATCGCTGTCATCGTCTCTGT+GGG 0.438188 3_3:+73449036 None:intergenic
GTGGGCTTGCACCCAAGATT+AGG 0.440604 3_3:-73448795 Msa0471240:CDS
GCACCAATCCATGGGCTGTA+TGG 0.441370 3_3:-73450183 Msa0471240:CDS
CTTGGACGGCTGAGGAGAAT+AGG 0.445934 3_3:-73450153 Msa0471240:CDS
TCGAAGACCCAACTAAACTT+AGG 0.447054 3_3:+73448730 None:intergenic
AAAACTACAAAATAATCGTT+TGG 0.448525 3_3:+73450295 None:intergenic
GATGAAACCTAAGTTTAGTT+GGG 0.451996 3_3:-73448737 Msa0471240:CDS
ATATCTCTATCTTTCGGGTC+GGG 0.456137 3_3:-73450110 Msa0471240:CDS
TCCTCCACTGGTTTGGCTAG+TGG 0.461572 3_3:+73450415 None:intergenic
CCAGTCTGTTAAACCATGAT+TGG 0.462427 3_3:+73450233 None:intergenic
GGCTGCCAACATTCCTCCAC+TGG 0.466668 3_3:+73450403 None:intergenic
CTGCAGAGAAATGACTGAAT+AGG 0.475282 3_3:+73448947 None:intergenic
ATATTATAAGATACTCCCTT+CGG 0.475553 3_3:+73448488 None:intergenic
TCTTGCAGCCTCCTAATCTT+GGG 0.478217 3_3:+73448784 None:intergenic
GCATAAGCAAAAGCCTTGTA+TGG 0.479543 3_3:+73449225 None:intergenic
TCTGCAGTGGCACAACGTAT+TGG 0.480986 3_3:-73448931 Msa0471240:CDS
GTACGTTGGCAATGCTTCCT+CGG 0.500450 3_3:+73450255 None:intergenic
ATCCAATACTTAATTAGAGC+TGG 0.502293 3_3:-73450061 Msa0471240:CDS
ATGGTGTAGGATATAGGAAC+AGG 0.502877 3_3:-73449255 Msa0471240:intron
TGCCAGCTCTAATTAAGTAT+TGG 0.509971 3_3:+73450059 None:intergenic
CCAATCATGGTTTAACAGAC+TGG 0.510965 3_3:-73450233 Msa0471240:CDS
CATATCTCTATCTTTCGGGT+CGG 0.512882 3_3:-73450111 Msa0471240:CDS
ATGGTTTAACAGACTGGATG+GGG 0.515527 3_3:-73450227 Msa0471240:CDS
CTGGTTCAAGCACCAATCCA+TGG 0.522757 3_3:-73450192 Msa0471240:CDS
TCATGGTTTAACAGACTGGA+TGG 0.523384 3_3:-73450229 Msa0471240:CDS
CCAAACCAGTGGAGGAATGT+TGG 0.526760 3_3:-73450408 Msa0471240:CDS
AATATATCAAGCAATGATGA+TGG 0.536988 3_3:-73450599 Msa0471240:exon
TGATAAGCAAACACTAGGGT+AGG 0.538954 3_3:+73448462 None:intergenic
GATGGGGTTGGAGACGAGAC+TGG 0.544491 3_3:-73450211 Msa0471240:CDS
TCCGACGGTAGTGAAGAGTC+TGG 0.545230 3_3:+73450367 None:intergenic
CCATCATGCATCAAGTGTCC+GGG 0.545387 3_3:+73448982 None:intergenic
TTTAACAGACTGGATGGGGT+TGG 0.546711 3_3:-73450223 Msa0471240:CDS
CATGGTTTAACAGACTGGAT+GGG 0.552177 3_3:-73450228 Msa0471240:CDS
TAGTTTATATATTAAACCGA+AGG 0.553768 3_3:-73448504 Msa0471240:three_prime_UTR
CAGCATGGCTCGACTAGCTA+AGG 0.555157 3_3:-73449166 Msa0471240:CDS
TGTATGGACACGCTCTTGGA+CGG 0.555722 3_3:-73450167 Msa0471240:CDS
TTACTTATATATAGAACTAG+AGG 0.556459 3_3:+73448627 None:intergenic
TCTACCACAATGCCATCTAA+AGG 0.559658 3_3:-73450542 Msa0471240:CDS
AAAAGTGGCTCGCTCTTGGA+AGG 0.559887 3_3:+73449200 None:intergenic
ATACTTAATTAGAGCTGGCA+TGG 0.560206 3_3:-73450056 Msa0471240:intron
CTCAATTAGGACCACGTGCG+TGG 0.562488 3_3:-73450567 Msa0471240:CDS
AGTAACCATATAACAATGCC+CGG 0.565594 3_3:-73449000 Msa0471240:CDS
GAGCGTGTCCATACAGCCCA+TGG 0.565706 3_3:+73450175 None:intergenic
GTACATGATAAGCAAACACT+AGG 0.569112 3_3:+73448457 None:intergenic
TAGTGACTACATCGATAGCT+TGG 0.572127 3_3:-73448896 Msa0471240:CDS
TATCGCTGTCATCGTCTCTG+TGG 0.572162 3_3:+73449035 None:intergenic
CCAACGCTTGCATGTATATG+TGG 0.573043 3_3:-73449132 Msa0471240:CDS
AGTTTATATATTAAACCGAA+GGG 0.575443 3_3:-73448503 Msa0471240:three_prime_UTR
TGTCCATACAGCCCATGGAT+TGG 0.576962 3_3:+73450180 None:intergenic
CCACATATACATGCAAGCGT+TGG 0.581994 3_3:+73449132 None:intergenic
TTAAACCATGATTGGTACGT+TGG 0.582627 3_3:+73450241 None:intergenic
TGGTTCAAGCACCAATCCAT+GGG 0.582779 3_3:-73450191 Msa0471240:CDS
GACACGCTCTTGGACGGCTG+AGG 0.585462 3_3:-73450161 Msa0471240:CDS
ATTCAGTCATTTCTCTGCAG+TGG 0.588279 3_3:-73448944 Msa0471240:CDS
GGCTTGCACCCAAGATTAGG+AGG 0.589066 3_3:-73448792 Msa0471240:CDS
AACAGGAAGTAATCCATACA+AGG 0.590466 3_3:-73449238 Msa0471240:CDS
TGGAGTTCTTGATTGGACGT+TGG 0.591629 3_3:-73448876 Msa0471240:CDS
CCCGGACACTTGATGCATGA+TGG 0.596093 3_3:-73448982 Msa0471240:CDS
GCCACTAGCCAAACCAGTGG+AGG 0.597505 3_3:-73450416 Msa0471240:CDS
TACTTATATATAGAACTAGA+GGG 0.597791 3_3:+73448628 None:intergenic
ACAACGTATTGGTGTGTACA+CGG 0.599250 3_3:-73448920 Msa0471240:CDS
GCTGCCGTCTGACAGAAAAG+TGG 0.600013 3_3:+73449185 None:intergenic
GATCATTGCAAAACTTCTAG+AGG 0.605970 3_3:-73449064 Msa0471240:CDS
GCTAGAGGGTTTGACAAGCG+AGG 0.609085 3_3:-73448842 Msa0471240:CDS
TGGAGATTGGAGAAGCTAGA+GGG 0.609211 3_3:-73448856 Msa0471240:CDS
GAAGGCATTAAGGGATCGAA+CGG 0.611309 3_3:-73450326 Msa0471240:CDS
AGAAATGACTGAATAGGTGT+GGG 0.611780 3_3:+73448953 None:intergenic
TTGGAGATTGGAGAAGCTAG+AGG 0.613405 3_3:-73448857 Msa0471240:CDS
TGATCGATGAACTCGTCCGA+CGG 0.617305 3_3:+73450352 None:intergenic
CGTGCACAAGAGATCGTGTG+TGG 0.620067 3_3:-73448814 Msa0471240:CDS
ACGGCTGAGGAGAATAGGCA+TGG 0.622537 3_3:-73450148 Msa0471240:CDS
GATAAGCAAACACTAGGGTA+GGG 0.622620 3_3:+73448463 None:intergenic
CATTGCAAAACTTCTAGAGG+TGG 0.625212 3_3:-73449061 Msa0471240:CDS
GCCAGACTCTTCACTACCGT+CGG 0.626247 3_3:-73450368 Msa0471240:CDS
CTAGAGGGTTTGACAAGCGA+GGG 0.626748 3_3:-73448841 Msa0471240:CDS
CGAGTTCATCGATCAAGTGA+AGG 0.629548 3_3:-73450344 Msa0471240:CDS
GCCACGAGATTGCATATGAG+AGG 0.641136 3_3:-73449086 Msa0471240:CDS
GAGAAATGACTGAATAGGTG+TGG 0.645655 3_3:+73448952 None:intergenic
TCCTCTCATATGCAATCTCG+TGG 0.655385 3_3:+73449085 None:intergenic
TACATGATAAGCAAACACTA+GGG 0.657994 3_3:+73448458 None:intergenic
GGGGCCTTTAGATGGCATTG+TGG 0.664695 3_3:+73450538 None:intergenic
GTGCACAAGAGATCGTGTGT+GGG 0.665993 3_3:-73448813 Msa0471240:CDS
GCTCGACTAGCTAAGGAGAG+AGG 0.671356 3_3:-73449159 Msa0471240:CDS
TGTGGTAGAATCCACGCACG+TGG 0.679284 3_3:+73450556 None:intergenic
TCGCTGTCATCGTCTCTGTG+GGG 0.704169 3_3:+73449037 None:intergenic
GCTGCCACTAGCCAAACCAG+TGG 0.706140 3_3:-73450419 Msa0471240:CDS
GAGTCTGGCAACAAATCATG+TGG 0.719794 3_3:+73450382 None:intergenic
AGTGGGTGACATGATCACCG+AGG 0.783297 3_3:-73450272 Msa0471240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATATATAAGTAAAATT+TGG - chr3_3:73450456-73450475 Msa0471240:CDS 10.0%
!! TCTATATATAAGTAAAATTT+GGG - chr3_3:73450457-73450476 Msa0471240:CDS 10.0%
!! TTTAATATATAAACTAAAAC+TGG + chr3_3:73450568-73450587 None:intergenic 10.0%
!! TTCTATATATAAGTAAAATT+TGG - chr3_3:73450456-73450475 Msa0471240:CDS 10.0%
!! TCTATATATAAGTAAAATTT+GGG - chr3_3:73450457-73450476 Msa0471240:CDS 10.0%
!! TTTAATATATAAACTAAAAC+TGG + chr3_3:73450568-73450587 None:intergenic 10.0%
!!! ATGATATTTTTTATACACAT+CGG + chr3_3:73449180-73449199 None:intergenic 15.0%
!! CTTAATCATAAATGAAATAA+CGG + chr3_3:73449458-73449477 None:intergenic 15.0%
!! TATTTCATTTATGATTAAGA+TGG - chr3_3:73449459-73449478 Msa0471240:intron 15.0%
!!! AGTCTAAAATAATTGTTATA+TGG - chr3_3:73449500-73449519 Msa0471240:intron 15.0%
!! TAAAATTAATTGATTGCTTA+TGG - chr3_3:73449802-73449821 Msa0471240:intron 15.0%
!!! ATGATATTTTTTATACACAT+CGG + chr3_3:73449180-73449199 None:intergenic 15.0%
!! CTTAATCATAAATGAAATAA+CGG + chr3_3:73449458-73449477 None:intergenic 15.0%
!! TATTTCATTTATGATTAAGA+TGG - chr3_3:73449459-73449478 Msa0471240:intron 15.0%
!!! AGTCTAAAATAATTGTTATA+TGG - chr3_3:73449500-73449519 Msa0471240:intron 15.0%
!! TAAAATTAATTGATTGCTTA+TGG - chr3_3:73449802-73449821 Msa0471240:intron 15.0%
!!! TTGAAAATTTCTTTCTTTTC+GGG + chr3_3:73448607-73448626 None:intergenic 20.0%
!!! CTTGAAAATTTCTTTCTTTT+CGG + chr3_3:73448608-73448627 None:intergenic 20.0%
!! AAAACTACAAAATAATCGTT+TGG + chr3_3:73448784-73448803 None:intergenic 20.0%
!!! GATTATTTTGTAGTTTTAGT+GGG - chr3_3:73448787-73448806 Msa0471240:CDS 20.0%
!!! ATATCTTTCCATATTCATTT+TGG - chr3_3:73449339-73449358 Msa0471240:intron 20.0%
!!! TATCTTTCCATATTCATTTT+GGG - chr3_3:73449340-73449359 Msa0471240:intron 20.0%
!!! TGGTAAAGATTTAAAAGTAT+GGG + chr3_3:73449368-73449387 None:intergenic 20.0%
!! AAAAGTGGAAGAAATATTAT+AGG - chr3_3:73449407-73449426 Msa0471240:intron 20.0%
!! TACTTATATATAGAACTAGA+GGG + chr3_3:73450451-73450470 None:intergenic 20.0%
!! TTACTTATATATAGAACTAG+AGG + chr3_3:73450452-73450471 None:intergenic 20.0%
!! TAGTTTATATATTAAACCGA+AGG - chr3_3:73450572-73450591 Msa0471240:CDS 20.0%
!! AGTTTATATATTAAACCGAA+GGG - chr3_3:73450573-73450592 Msa0471240:CDS 20.0%
!!! TTGAAAATTTCTTTCTTTTC+GGG + chr3_3:73448607-73448626 None:intergenic 20.0%
!!! CTTGAAAATTTCTTTCTTTT+CGG + chr3_3:73448608-73448627 None:intergenic 20.0%
!! AAAACTACAAAATAATCGTT+TGG + chr3_3:73448784-73448803 None:intergenic 20.0%
!!! GATTATTTTGTAGTTTTAGT+GGG - chr3_3:73448787-73448806 Msa0471240:CDS 20.0%
!!! ATATCTTTCCATATTCATTT+TGG - chr3_3:73449339-73449358 Msa0471240:intron 20.0%
!!! TATCTTTCCATATTCATTTT+GGG - chr3_3:73449340-73449359 Msa0471240:intron 20.0%
!!! TGGTAAAGATTTAAAAGTAT+GGG + chr3_3:73449368-73449387 None:intergenic 20.0%
!! AAAAGTGGAAGAAATATTAT+AGG - chr3_3:73449407-73449426 Msa0471240:intron 20.0%
!! TACTTATATATAGAACTAGA+GGG + chr3_3:73450451-73450470 None:intergenic 20.0%
!! TTACTTATATATAGAACTAG+AGG + chr3_3:73450452-73450471 None:intergenic 20.0%
!! TAGTTTATATATTAAACCGA+AGG - chr3_3:73450572-73450591 Msa0471240:CDS 20.0%
!! AGTTTATATATTAAACCGAA+GGG - chr3_3:73450573-73450592 Msa0471240:CDS 20.0%
! AATATATCAAGCAATGATGA+TGG - chr3_3:73448477-73448496 Msa0471240:three_prime_UTR 25.0%
!!! CGATTATTTTGTAGTTTTAG+TGG - chr3_3:73448786-73448805 Msa0471240:CDS 25.0%
! CAAAACATATCTCTATCTTT+CGG - chr3_3:73448960-73448979 Msa0471240:CDS 25.0%
! AAAACATATCTCTATCTTTC+GGG - chr3_3:73448961-73448980 Msa0471240:CDS 25.0%
! AATTTGTGTGGATCAATTTA+CGG - chr3_3:73449223-73449242 Msa0471240:CDS 25.0%
!! ATCTTTCCATATTCATTTTG+GGG - chr3_3:73449341-73449360 Msa0471240:intron 25.0%
! CTGGTAAAGATTTAAAAGTA+TGG + chr3_3:73449369-73449388 None:intergenic 25.0%
! TTAAAATCAGAGAAGATATC+TGG + chr3_3:73449388-73449407 None:intergenic 25.0%
!!! TCTTCTCTGATTTTAAAAAG+TGG - chr3_3:73449392-73449411 Msa0471240:intron 25.0%
! TTACCAAAAAAATTGTGTGT+GGG + chr3_3:73449595-73449614 None:intergenic 25.0%
! ATTACCAAAAAAATTGTGTG+TGG + chr3_3:73449596-73449615 None:intergenic 25.0%
!!! ACAATTTTTTTGGTAATGCT+TGG - chr3_3:73449599-73449618 Msa0471240:intron 25.0%
! ATTCTTACTTTGTTCCTTAA+AGG - chr3_3:73449676-73449695 Msa0471240:intron 25.0%
! TTCTTACTTTGTTCCTTAAA+GGG - chr3_3:73449677-73449696 Msa0471240:intron 25.0%
! ATCATCCATGTAAAAAAACA+GGG + chr3_3:73449762-73449781 None:intergenic 25.0%
! TATCATCCATGTAAAAAAAC+AGG + chr3_3:73449763-73449782 None:intergenic 25.0%
!! AATTTTTGTGCACTTTCATT+TGG + chr3_3:73450383-73450402 None:intergenic 25.0%
! ATATTATAAGATACTCCCTT+CGG + chr3_3:73450591-73450610 None:intergenic 25.0%
! AATATATCAAGCAATGATGA+TGG - chr3_3:73448477-73448496 Msa0471240:three_prime_UTR 25.0%
!!! CGATTATTTTGTAGTTTTAG+TGG - chr3_3:73448786-73448805 Msa0471240:CDS 25.0%
! CAAAACATATCTCTATCTTT+CGG - chr3_3:73448960-73448979 Msa0471240:CDS 25.0%
! AAAACATATCTCTATCTTTC+GGG - chr3_3:73448961-73448980 Msa0471240:CDS 25.0%
! AATTTGTGTGGATCAATTTA+CGG - chr3_3:73449223-73449242 Msa0471240:CDS 25.0%
!! ATCTTTCCATATTCATTTTG+GGG - chr3_3:73449341-73449360 Msa0471240:intron 25.0%
! CTGGTAAAGATTTAAAAGTA+TGG + chr3_3:73449369-73449388 None:intergenic 25.0%
! TTAAAATCAGAGAAGATATC+TGG + chr3_3:73449388-73449407 None:intergenic 25.0%
!!! TCTTCTCTGATTTTAAAAAG+TGG - chr3_3:73449392-73449411 Msa0471240:intron 25.0%
! TTACCAAAAAAATTGTGTGT+GGG + chr3_3:73449595-73449614 None:intergenic 25.0%
! ATTACCAAAAAAATTGTGTG+TGG + chr3_3:73449596-73449615 None:intergenic 25.0%
!!! ACAATTTTTTTGGTAATGCT+TGG - chr3_3:73449599-73449618 Msa0471240:intron 25.0%
! ATTCTTACTTTGTTCCTTAA+AGG - chr3_3:73449676-73449695 Msa0471240:intron 25.0%
! TTCTTACTTTGTTCCTTAAA+GGG - chr3_3:73449677-73449696 Msa0471240:intron 25.0%
! ATCATCCATGTAAAAAAACA+GGG + chr3_3:73449762-73449781 None:intergenic 25.0%
! TATCATCCATGTAAAAAAAC+AGG + chr3_3:73449763-73449782 None:intergenic 25.0%
!! AATTTTTGTGCACTTTCATT+TGG + chr3_3:73450383-73450402 None:intergenic 25.0%
! ATATTATAAGATACTCCCTT+CGG + chr3_3:73450591-73450610 None:intergenic 25.0%
!!! TTGGGATTTTAGGACTTTTT+GGG + chr3_3:73448566-73448585 None:intergenic 30.0%
!!! TTTGGGATTTTAGGACTTTT+TGG + chr3_3:73448567-73448586 None:intergenic 30.0%
!!! AGTATGTCTTTTGGGATTTT+AGG + chr3_3:73448576-73448595 None:intergenic 30.0%
! AGACATTGAGTATGTCTTTT+GGG + chr3_3:73448584-73448603 None:intergenic 30.0%
!!! TTTTCAAGTCATTAGAGAGT+TGG - chr3_3:73448620-73448639 Msa0471240:three_prime_UTR 30.0%
! TTTCAAGTCATTAGAGAGTT+GGG - chr3_3:73448621-73448640 Msa0471240:three_prime_UTR 30.0%
ATCCAATACTTAATTAGAGC+TGG - chr3_3:73449015-73449034 Msa0471240:CDS 30.0%
CATTCAAATGTGAATTTGTG+TGG - chr3_3:73449211-73449230 Msa0471240:CDS 30.0%
! TAGACTTTTACAAAGAGAGA+GGG + chr3_3:73449486-73449505 None:intergenic 30.0%
! TTAGACTTTTACAAAGAGAG+AGG + chr3_3:73449487-73449506 None:intergenic 30.0%
TACCAAAAAAATTGTGTGTG+GGG + chr3_3:73449594-73449613 None:intergenic 30.0%
!! TCCATCCATATGATTTTGAT+CGG + chr3_3:73449716-73449735 None:intergenic 30.0%
GTAAAAAAACAGGGTAATGT+AGG + chr3_3:73449753-73449772 None:intergenic 30.0%
!!! CATTACCCTGTTTTTTTACA+TGG - chr3_3:73449754-73449773 Msa0471240:intron 30.0%
TAATTGATTGCTTATGGTGT+AGG - chr3_3:73449808-73449827 Msa0471240:intron 30.0%
AGATGAAACCTAAGTTTAGT+TGG - chr3_3:73450338-73450357 Msa0471240:CDS 30.0%
GATGAAACCTAAGTTTAGTT+GGG - chr3_3:73450339-73450358 Msa0471240:CDS 30.0%
!!! TTGGGATTTTAGGACTTTTT+GGG + chr3_3:73448566-73448585 None:intergenic 30.0%
!!! TTTGGGATTTTAGGACTTTT+TGG + chr3_3:73448567-73448586 None:intergenic 30.0%
!!! AGTATGTCTTTTGGGATTTT+AGG + chr3_3:73448576-73448595 None:intergenic 30.0%
! AGACATTGAGTATGTCTTTT+GGG + chr3_3:73448584-73448603 None:intergenic 30.0%
!!! TTTTCAAGTCATTAGAGAGT+TGG - chr3_3:73448620-73448639 Msa0471240:three_prime_UTR 30.0%
! TTTCAAGTCATTAGAGAGTT+GGG - chr3_3:73448621-73448640 Msa0471240:three_prime_UTR 30.0%
ATCCAATACTTAATTAGAGC+TGG - chr3_3:73449015-73449034 Msa0471240:CDS 30.0%
CATTCAAATGTGAATTTGTG+TGG - chr3_3:73449211-73449230 Msa0471240:CDS 30.0%
! TAGACTTTTACAAAGAGAGA+GGG + chr3_3:73449486-73449505 None:intergenic 30.0%
! TTAGACTTTTACAAAGAGAG+AGG + chr3_3:73449487-73449506 None:intergenic 30.0%
TACCAAAAAAATTGTGTGTG+GGG + chr3_3:73449594-73449613 None:intergenic 30.0%
!! TCCATCCATATGATTTTGAT+CGG + chr3_3:73449716-73449735 None:intergenic 30.0%
GTAAAAAAACAGGGTAATGT+AGG + chr3_3:73449753-73449772 None:intergenic 30.0%
!!! CATTACCCTGTTTTTTTACA+TGG - chr3_3:73449754-73449773 Msa0471240:intron 30.0%
TAATTGATTGCTTATGGTGT+AGG - chr3_3:73449808-73449827 Msa0471240:intron 30.0%
AGATGAAACCTAAGTTTAGT+TGG - chr3_3:73450338-73450357 Msa0471240:CDS 30.0%
GATGAAACCTAAGTTTAGTT+GGG - chr3_3:73450339-73450358 Msa0471240:CDS 30.0%
!!! ATTTTAGGACTTTTTGGGAC+GGG + chr3_3:73448561-73448580 None:intergenic 35.0%
!!! GATTTTAGGACTTTTTGGGA+CGG + chr3_3:73448562-73448581 None:intergenic 35.0%
! GAGACATTGAGTATGTCTTT+TGG + chr3_3:73448585-73448604 None:intergenic 35.0%
TTAAACCATGATTGGTACGT+TGG + chr3_3:73448838-73448857 None:intergenic 35.0%
! TGCCAGCTCTAATTAAGTAT+TGG + chr3_3:73449020-73449039 None:intergenic 35.0%
ATACTTAATTAGAGCTGGCA+TGG - chr3_3:73449020-73449039 Msa0471240:CDS 35.0%
CATGCAAATACTCACATAAG+AGG + chr3_3:73449298-73449317 None:intergenic 35.0%
! AGACTTTTACAAAGAGAGAG+GGG + chr3_3:73449485-73449504 None:intergenic 35.0%
!!! TTCCCCACACACAATTTTTT+TGG - chr3_3:73449589-73449608 Msa0471240:intron 35.0%
ATGTGTAGAATGGATGAATG+TGG + chr3_3:73449629-73449648 None:intergenic 35.0%
CATTCATCCATTCTACACAT+TGG - chr3_3:73449629-73449648 Msa0471240:intron 35.0%
ATCCATTCTACACATTGGAT+CGG - chr3_3:73449634-73449653 Msa0471240:intron 35.0%
!! CCATCCATATGATTTTGATC+GGG + chr3_3:73449715-73449734 None:intergenic 35.0%
TTGCTTATGGTGTAGGATAT+AGG - chr3_3:73449815-73449834 Msa0471240:intron 35.0%
AACAGGAAGTAATCCATACA+AGG - chr3_3:73449838-73449857 Msa0471240:intron 35.0%
GATCATTGCAAAACTTCTAG+AGG - chr3_3:73450012-73450031 Msa0471240:intron 35.0%
AGTAACCATATAACAATGCC+CGG - chr3_3:73450076-73450095 Msa0471240:CDS 35.0%
AGAAATGACTGAATAGGTGT+GGG + chr3_3:73450126-73450145 None:intergenic 35.0%
!!! ATTTTAGGACTTTTTGGGAC+GGG + chr3_3:73448561-73448580 None:intergenic 35.0%
!!! GATTTTAGGACTTTTTGGGA+CGG + chr3_3:73448562-73448581 None:intergenic 35.0%
! GAGACATTGAGTATGTCTTT+TGG + chr3_3:73448585-73448604 None:intergenic 35.0%
TTAAACCATGATTGGTACGT+TGG + chr3_3:73448838-73448857 None:intergenic 35.0%
! TGCCAGCTCTAATTAAGTAT+TGG + chr3_3:73449020-73449039 None:intergenic 35.0%
ATACTTAATTAGAGCTGGCA+TGG - chr3_3:73449020-73449039 Msa0471240:CDS 35.0%
CATGCAAATACTCACATAAG+AGG + chr3_3:73449298-73449317 None:intergenic 35.0%
! AGACTTTTACAAAGAGAGAG+GGG + chr3_3:73449485-73449504 None:intergenic 35.0%
!!! TTCCCCACACACAATTTTTT+TGG - chr3_3:73449589-73449608 Msa0471240:intron 35.0%
ATGTGTAGAATGGATGAATG+TGG + chr3_3:73449629-73449648 None:intergenic 35.0%
CATTCATCCATTCTACACAT+TGG - chr3_3:73449629-73449648 Msa0471240:intron 35.0%
ATCCATTCTACACATTGGAT+CGG - chr3_3:73449634-73449653 Msa0471240:intron 35.0%
!! CCATCCATATGATTTTGATC+GGG + chr3_3:73449715-73449734 None:intergenic 35.0%
TTGCTTATGGTGTAGGATAT+AGG - chr3_3:73449815-73449834 Msa0471240:intron 35.0%
AACAGGAAGTAATCCATACA+AGG - chr3_3:73449838-73449857 Msa0471240:intron 35.0%
GATCATTGCAAAACTTCTAG+AGG - chr3_3:73450012-73450031 Msa0471240:intron 35.0%
AGTAACCATATAACAATGCC+CGG - chr3_3:73450076-73450095 Msa0471240:CDS 35.0%
AGAAATGACTGAATAGGTGT+GGG + chr3_3:73450126-73450145 None:intergenic 35.0%
ATGGCAATGTGCACTCAATT+AGG - chr3_3:73448496-73448515 Msa0471240:three_prime_UTR 40.0%
TCTACCACAATGCCATCTAA+AGG - chr3_3:73448534-73448553 Msa0471240:three_prime_UTR 40.0%
!!! TTTTAGGACTTTTTGGGACG+GGG + chr3_3:73448560-73448579 None:intergenic 40.0%
!! TCGATCAAGTGAAGGCATTA+AGG - chr3_3:73448740-73448759 Msa0471240:CDS 40.0%
!! CGATCAAGTGAAGGCATTAA+GGG - chr3_3:73448741-73448760 Msa0471240:CDS 40.0%
CCAGTCTGTTAAACCATGAT+TGG + chr3_3:73448846-73448865 None:intergenic 40.0%
CCAATCATGGTTTAACAGAC+TGG - chr3_3:73448843-73448862 Msa0471240:CDS 40.0%
TCATGGTTTAACAGACTGGA+TGG - chr3_3:73448847-73448866 Msa0471240:CDS 40.0%
CATGGTTTAACAGACTGGAT+GGG - chr3_3:73448848-73448867 Msa0471240:CDS 40.0%
ATGGTTTAACAGACTGGATG+GGG - chr3_3:73448849-73448868 Msa0471240:CDS 40.0%
! CATATCTCTATCTTTCGGGT+CGG - chr3_3:73448965-73448984 Msa0471240:CDS 40.0%
! ATATCTCTATCTTTCGGGTC+GGG - chr3_3:73448966-73448985 Msa0471240:CDS 40.0%
ATGGGACCCCAAAATGAATA+TGG + chr3_3:73449350-73449369 None:intergenic 40.0%
! TTCCTTAAAGGGTGTGAATG+TGG - chr3_3:73449688-73449707 Msa0471240:intron 40.0%
! TCCTTAAAGGGTGTGAATGT+GGG - chr3_3:73449689-73449708 Msa0471240:intron 40.0%
CCCGATCAAAATCATATGGA+TGG - chr3_3:73449712-73449731 Msa0471240:intron 40.0%
AAACAGGGTAATGTAGGTGA+TGG + chr3_3:73449747-73449766 None:intergenic 40.0%
ATGGTGTAGGATATAGGAAC+AGG - chr3_3:73449821-73449840 Msa0471240:intron 40.0%
! GCATAAGCAAAAGCCTTGTA+TGG + chr3_3:73449854-73449873 None:intergenic 40.0%
! CATTGCAAAACTTCTAGAGG+TGG - chr3_3:73450015-73450034 Msa0471240:intron 40.0%
GAGAAATGACTGAATAGGTG+TGG + chr3_3:73450127-73450146 None:intergenic 40.0%
CTGCAGAGAAATGACTGAAT+AGG + chr3_3:73450132-73450151 None:intergenic 40.0%
ATTCAGTCATTTCTCTGCAG+TGG - chr3_3:73450132-73450151 Msa0471240:CDS 40.0%
! ACAACGTATTGGTGTGTACA+CGG - chr3_3:73450156-73450175 Msa0471240:CDS 40.0%
TAGTGACTACATCGATAGCT+TGG - chr3_3:73450180-73450199 Msa0471240:CDS 40.0%
GATAGCTTGGAGTTCTTGAT+TGG - chr3_3:73450193-73450212 Msa0471240:CDS 40.0%
TCGAAGACCCAACTAAACTT+AGG + chr3_3:73450349-73450368 None:intergenic 40.0%
ATGGCAATGTGCACTCAATT+AGG - chr3_3:73448496-73448515 Msa0471240:three_prime_UTR 40.0%
TCTACCACAATGCCATCTAA+AGG - chr3_3:73448534-73448553 Msa0471240:three_prime_UTR 40.0%
!!! TTTTAGGACTTTTTGGGACG+GGG + chr3_3:73448560-73448579 None:intergenic 40.0%
!! TCGATCAAGTGAAGGCATTA+AGG - chr3_3:73448740-73448759 Msa0471240:CDS 40.0%
!! CGATCAAGTGAAGGCATTAA+GGG - chr3_3:73448741-73448760 Msa0471240:CDS 40.0%
CCAGTCTGTTAAACCATGAT+TGG + chr3_3:73448846-73448865 None:intergenic 40.0%
CCAATCATGGTTTAACAGAC+TGG - chr3_3:73448843-73448862 Msa0471240:CDS 40.0%
TCATGGTTTAACAGACTGGA+TGG - chr3_3:73448847-73448866 Msa0471240:CDS 40.0%
CATGGTTTAACAGACTGGAT+GGG - chr3_3:73448848-73448867 Msa0471240:CDS 40.0%
ATGGTTTAACAGACTGGATG+GGG - chr3_3:73448849-73448868 Msa0471240:CDS 40.0%
! CATATCTCTATCTTTCGGGT+CGG - chr3_3:73448965-73448984 Msa0471240:CDS 40.0%
! ATATCTCTATCTTTCGGGTC+GGG - chr3_3:73448966-73448985 Msa0471240:CDS 40.0%
ATGGGACCCCAAAATGAATA+TGG + chr3_3:73449350-73449369 None:intergenic 40.0%
! TTCCTTAAAGGGTGTGAATG+TGG - chr3_3:73449688-73449707 Msa0471240:intron 40.0%
! TCCTTAAAGGGTGTGAATGT+GGG - chr3_3:73449689-73449708 Msa0471240:intron 40.0%
CCCGATCAAAATCATATGGA+TGG - chr3_3:73449712-73449731 Msa0471240:intron 40.0%
AAACAGGGTAATGTAGGTGA+TGG + chr3_3:73449747-73449766 None:intergenic 40.0%
ATGGTGTAGGATATAGGAAC+AGG - chr3_3:73449821-73449840 Msa0471240:intron 40.0%
! GCATAAGCAAAAGCCTTGTA+TGG + chr3_3:73449854-73449873 None:intergenic 40.0%
! CATTGCAAAACTTCTAGAGG+TGG - chr3_3:73450015-73450034 Msa0471240:intron 40.0%
GAGAAATGACTGAATAGGTG+TGG + chr3_3:73450127-73450146 None:intergenic 40.0%
CTGCAGAGAAATGACTGAAT+AGG + chr3_3:73450132-73450151 None:intergenic 40.0%
ATTCAGTCATTTCTCTGCAG+TGG - chr3_3:73450132-73450151 Msa0471240:CDS 40.0%
! ACAACGTATTGGTGTGTACA+CGG - chr3_3:73450156-73450175 Msa0471240:CDS 40.0%
TAGTGACTACATCGATAGCT+TGG - chr3_3:73450180-73450199 Msa0471240:CDS 40.0%
GATAGCTTGGAGTTCTTGAT+TGG - chr3_3:73450193-73450212 Msa0471240:CDS 40.0%
TCGAAGACCCAACTAAACTT+AGG + chr3_3:73450349-73450368 None:intergenic 40.0%
GAGTCTGGCAACAAATCATG+TGG + chr3_3:73448697-73448716 None:intergenic 45.0%
CGAGTTCATCGATCAAGTGA+AGG - chr3_3:73448732-73448751 Msa0471240:CDS 45.0%
!! GAAGGCATTAAGGGATCGAA+CGG - chr3_3:73448750-73448769 Msa0471240:CDS 45.0%
CATTGCCAACGTACCAATCA+TGG - chr3_3:73448830-73448849 Msa0471240:CDS 45.0%
TTTAACAGACTGGATGGGGT+TGG - chr3_3:73448853-73448872 Msa0471240:CDS 45.0%
TGGTTCAAGCACCAATCCAT+GGG - chr3_3:73448885-73448904 Msa0471240:CDS 45.0%
GACCGATCCAATGTGTAGAA+TGG + chr3_3:73449639-73449658 None:intergenic 45.0%
TGGGCCCGATCAAAATCATA+TGG - chr3_3:73449708-73449727 Msa0471240:intron 45.0%
CCACATATACATGCAAGCGT+TGG + chr3_3:73449947-73449966 None:intergenic 45.0%
CCAACGCTTGCATGTATATG+TGG - chr3_3:73449944-73449963 Msa0471240:intron 45.0%
TCCTCTCATATGCAATCTCG+TGG + chr3_3:73449994-73450013 None:intergenic 45.0%
! AGTGTCCGGGCATTGTTATA+TGG + chr3_3:73450084-73450103 None:intergenic 45.0%
ACCATCATGCATCAAGTGTC+CGG + chr3_3:73450098-73450117 None:intergenic 45.0%
TGGAGTTCTTGATTGGACGT+TGG - chr3_3:73450200-73450219 Msa0471240:CDS 45.0%
CTTGATTGGACGTTGGAGAT+TGG - chr3_3:73450207-73450226 Msa0471240:CDS 45.0%
TTGGAGATTGGAGAAGCTAG+AGG - chr3_3:73450219-73450238 Msa0471240:CDS 45.0%
TGGAGATTGGAGAAGCTAGA+GGG - chr3_3:73450220-73450239 Msa0471240:CDS 45.0%
TCTTGCAGCCTCCTAATCTT+GGG + chr3_3:73450295-73450314 None:intergenic 45.0%
GAGTCTGGCAACAAATCATG+TGG + chr3_3:73448697-73448716 None:intergenic 45.0%
CGAGTTCATCGATCAAGTGA+AGG - chr3_3:73448732-73448751 Msa0471240:CDS 45.0%
!! GAAGGCATTAAGGGATCGAA+CGG - chr3_3:73448750-73448769 Msa0471240:CDS 45.0%
CATTGCCAACGTACCAATCA+TGG - chr3_3:73448830-73448849 Msa0471240:CDS 45.0%
TTTAACAGACTGGATGGGGT+TGG - chr3_3:73448853-73448872 Msa0471240:CDS 45.0%
TGGTTCAAGCACCAATCCAT+GGG - chr3_3:73448885-73448904 Msa0471240:CDS 45.0%
GACCGATCCAATGTGTAGAA+TGG + chr3_3:73449639-73449658 None:intergenic 45.0%
TGGGCCCGATCAAAATCATA+TGG - chr3_3:73449708-73449727 Msa0471240:intron 45.0%
CCACATATACATGCAAGCGT+TGG + chr3_3:73449947-73449966 None:intergenic 45.0%
CCAACGCTTGCATGTATATG+TGG - chr3_3:73449944-73449963 Msa0471240:intron 45.0%
TCCTCTCATATGCAATCTCG+TGG + chr3_3:73449994-73450013 None:intergenic 45.0%
! AGTGTCCGGGCATTGTTATA+TGG + chr3_3:73450084-73450103 None:intergenic 45.0%
ACCATCATGCATCAAGTGTC+CGG + chr3_3:73450098-73450117 None:intergenic 45.0%
TGGAGTTCTTGATTGGACGT+TGG - chr3_3:73450200-73450219 Msa0471240:CDS 45.0%
CTTGATTGGACGTTGGAGAT+TGG - chr3_3:73450207-73450226 Msa0471240:CDS 45.0%
TTGGAGATTGGAGAAGCTAG+AGG - chr3_3:73450219-73450238 Msa0471240:CDS 45.0%
TGGAGATTGGAGAAGCTAGA+GGG - chr3_3:73450220-73450239 Msa0471240:CDS 45.0%
TCTTGCAGCCTCCTAATCTT+GGG + chr3_3:73450295-73450314 None:intergenic 45.0%
! CCAACATTCCTCCACTGGTT+TGG + chr3_3:73448671-73448690 None:intergenic 50.0%
CCAAACCAGTGGAGGAATGT+TGG - chr3_3:73448668-73448687 Msa0471240:three_prime_UTR 50.0%
TGATCGATGAACTCGTCCGA+CGG + chr3_3:73448727-73448746 None:intergenic 50.0%
GTACGTTGGCAATGCTTCCT+CGG + chr3_3:73448824-73448843 None:intergenic 50.0%
CTGGTTCAAGCACCAATCCA+TGG - chr3_3:73448884-73448903 Msa0471240:CDS 50.0%
TGTCCATACAGCCCATGGAT+TGG + chr3_3:73448899-73448918 None:intergenic 50.0%
TGTATGGACACGCTCTTGGA+CGG - chr3_3:73448909-73448928 Msa0471240:CDS 50.0%
!! GGGTCGGGTTGATATGTTCA+TGG - chr3_3:73448981-73449000 Msa0471240:CDS 50.0%
GCCCACATTCACACCCTTTA+AGG + chr3_3:73449693-73449712 None:intergenic 50.0%
AAAAGTGGCTCGCTCTTGGA+AGG + chr3_3:73449879-73449898 None:intergenic 50.0%
ACAGAAAAGTGGCTCGCTCT+TGG + chr3_3:73449883-73449902 None:intergenic 50.0%
!!! CGAGCCACTTTTCTGTCAGA+CGG - chr3_3:73449887-73449906 Msa0471240:intron 50.0%
! TTTTCTGTCAGACGGCAGCA+TGG - chr3_3:73449895-73449914 Msa0471240:intron 50.0%
GCCACGAGATTGCATATGAG+AGG - chr3_3:73449990-73450009 Msa0471240:intron 50.0%
ATCGCTGTCATCGTCTCTGT+GGG + chr3_3:73450043-73450062 None:intergenic 50.0%
TATCGCTGTCATCGTCTCTG+TGG + chr3_3:73450044-73450063 None:intergenic 50.0%
CCATCATGCATCAAGTGTCC+GGG + chr3_3:73450097-73450116 None:intergenic 50.0%
TCTGCAGTGGCACAACGTAT+TGG - chr3_3:73450145-73450164 Msa0471240:CDS 50.0%
CTAGAGGGTTTGACAAGCGA+GGG - chr3_3:73450235-73450254 Msa0471240:CDS 50.0%
GTGCACAAGAGATCGTGTGT+GGG - chr3_3:73450263-73450282 Msa0471240:CDS 50.0%
CTCTTGCAGCCTCCTAATCT+TGG + chr3_3:73450296-73450315 None:intergenic 50.0%
! CCAACATTCCTCCACTGGTT+TGG + chr3_3:73448671-73448690 None:intergenic 50.0%
CCAAACCAGTGGAGGAATGT+TGG - chr3_3:73448668-73448687 Msa0471240:three_prime_UTR 50.0%
TGATCGATGAACTCGTCCGA+CGG + chr3_3:73448727-73448746 None:intergenic 50.0%
GTACGTTGGCAATGCTTCCT+CGG + chr3_3:73448824-73448843 None:intergenic 50.0%
CTGGTTCAAGCACCAATCCA+TGG - chr3_3:73448884-73448903 Msa0471240:CDS 50.0%
TGTCCATACAGCCCATGGAT+TGG + chr3_3:73448899-73448918 None:intergenic 50.0%
TGTATGGACACGCTCTTGGA+CGG - chr3_3:73448909-73448928 Msa0471240:CDS 50.0%
!! GGGTCGGGTTGATATGTTCA+TGG - chr3_3:73448981-73449000 Msa0471240:CDS 50.0%
GCCCACATTCACACCCTTTA+AGG + chr3_3:73449693-73449712 None:intergenic 50.0%
AAAAGTGGCTCGCTCTTGGA+AGG + chr3_3:73449879-73449898 None:intergenic 50.0%
ACAGAAAAGTGGCTCGCTCT+TGG + chr3_3:73449883-73449902 None:intergenic 50.0%
!!! CGAGCCACTTTTCTGTCAGA+CGG - chr3_3:73449887-73449906 Msa0471240:intron 50.0%
! TTTTCTGTCAGACGGCAGCA+TGG - chr3_3:73449895-73449914 Msa0471240:intron 50.0%
GCCACGAGATTGCATATGAG+AGG - chr3_3:73449990-73450009 Msa0471240:intron 50.0%
ATCGCTGTCATCGTCTCTGT+GGG + chr3_3:73450043-73450062 None:intergenic 50.0%
TATCGCTGTCATCGTCTCTG+TGG + chr3_3:73450044-73450063 None:intergenic 50.0%
CCATCATGCATCAAGTGTCC+GGG + chr3_3:73450097-73450116 None:intergenic 50.0%
TCTGCAGTGGCACAACGTAT+TGG - chr3_3:73450145-73450164 Msa0471240:CDS 50.0%
CTAGAGGGTTTGACAAGCGA+GGG - chr3_3:73450235-73450254 Msa0471240:CDS 50.0%
GTGCACAAGAGATCGTGTGT+GGG - chr3_3:73450263-73450282 Msa0471240:CDS 50.0%
CTCTTGCAGCCTCCTAATCT+TGG + chr3_3:73450296-73450315 None:intergenic 50.0%
CTCAATTAGGACCACGTGCG+TGG - chr3_3:73448509-73448528 Msa0471240:three_prime_UTR 55.0%
TGTGGTAGAATCCACGCACG+TGG + chr3_3:73448523-73448542 None:intergenic 55.0%
GGGGCCTTTAGATGGCATTG+TGG + chr3_3:73448541-73448560 None:intergenic 55.0%
! TTTGGGACGGGGCCTTTAGA+TGG + chr3_3:73448549-73448568 None:intergenic 55.0%
!! TCCTCCACTGGTTTGGCTAG+TGG + chr3_3:73448664-73448683 None:intergenic 55.0%
GCCAGACTCTTCACTACCGT+CGG - chr3_3:73448708-73448727 Msa0471240:exon 55.0%
TCCGACGGTAGTGAAGAGTC+TGG + chr3_3:73448712-73448731 None:intergenic 55.0%
AGTGGGTGACATGATCACCG+AGG - chr3_3:73448804-73448823 Msa0471240:CDS 55.0%
! GCACCAATCCATGGGCTGTA+TGG - chr3_3:73448893-73448912 Msa0471240:CDS 55.0%
CTTGGACGGCTGAGGAGAAT+AGG - chr3_3:73448923-73448942 Msa0471240:CDS 55.0%
ACGGCTGAGGAGAATAGGCA+TGG - chr3_3:73448928-73448947 Msa0471240:CDS 55.0%
GCTGCCGTCTGACAGAAAAG+TGG + chr3_3:73449894-73449913 None:intergenic 55.0%
! CAGCATGGCTCGACTAGCTA+AGG - chr3_3:73449910-73449929 Msa0471240:intron 55.0%
! GCTCGACTAGCTAAGGAGAG+AGG - chr3_3:73449917-73449936 Msa0471240:intron 55.0%
TCGCTGTCATCGTCTCTGTG+GGG + chr3_3:73450042-73450061 None:intergenic 55.0%
CCCGGACACTTGATGCATGA+TGG - chr3_3:73450094-73450113 Msa0471240:CDS 55.0%
GCTAGAGGGTTTGACAAGCG+AGG - chr3_3:73450234-73450253 Msa0471240:CDS 55.0%
CGTGCACAAGAGATCGTGTG+TGG - chr3_3:73450262-73450281 Msa0471240:CDS 55.0%
GTGGGCTTGCACCCAAGATT+AGG - chr3_3:73450281-73450300 Msa0471240:CDS 55.0%
GGCTTGCACCCAAGATTAGG+AGG - chr3_3:73450284-73450303 Msa0471240:CDS 55.0%
CTCAATTAGGACCACGTGCG+TGG - chr3_3:73448509-73448528 Msa0471240:three_prime_UTR 55.0%
TGTGGTAGAATCCACGCACG+TGG + chr3_3:73448523-73448542 None:intergenic 55.0%
GGGGCCTTTAGATGGCATTG+TGG + chr3_3:73448541-73448560 None:intergenic 55.0%
! TTTGGGACGGGGCCTTTAGA+TGG + chr3_3:73448549-73448568 None:intergenic 55.0%
!! TCCTCCACTGGTTTGGCTAG+TGG + chr3_3:73448664-73448683 None:intergenic 55.0%
GCCAGACTCTTCACTACCGT+CGG - chr3_3:73448708-73448727 Msa0471240:exon 55.0%
TCCGACGGTAGTGAAGAGTC+TGG + chr3_3:73448712-73448731 None:intergenic 55.0%
AGTGGGTGACATGATCACCG+AGG - chr3_3:73448804-73448823 Msa0471240:CDS 55.0%
! GCACCAATCCATGGGCTGTA+TGG - chr3_3:73448893-73448912 Msa0471240:CDS 55.0%
CTTGGACGGCTGAGGAGAAT+AGG - chr3_3:73448923-73448942 Msa0471240:CDS 55.0%
ACGGCTGAGGAGAATAGGCA+TGG - chr3_3:73448928-73448947 Msa0471240:CDS 55.0%
GCTGCCGTCTGACAGAAAAG+TGG + chr3_3:73449894-73449913 None:intergenic 55.0%
! CAGCATGGCTCGACTAGCTA+AGG - chr3_3:73449910-73449929 Msa0471240:intron 55.0%
! GCTCGACTAGCTAAGGAGAG+AGG - chr3_3:73449917-73449936 Msa0471240:intron 55.0%
TCGCTGTCATCGTCTCTGTG+GGG + chr3_3:73450042-73450061 None:intergenic 55.0%
CCCGGACACTTGATGCATGA+TGG - chr3_3:73450094-73450113 Msa0471240:CDS 55.0%
GCTAGAGGGTTTGACAAGCG+AGG - chr3_3:73450234-73450253 Msa0471240:CDS 55.0%
CGTGCACAAGAGATCGTGTG+TGG - chr3_3:73450262-73450281 Msa0471240:CDS 55.0%
GTGGGCTTGCACCCAAGATT+AGG - chr3_3:73450281-73450300 Msa0471240:CDS 55.0%
GGCTTGCACCCAAGATTAGG+AGG - chr3_3:73450284-73450303 Msa0471240:CDS 55.0%
GCTGCCACTAGCCAAACCAG+TGG - chr3_3:73448657-73448676 Msa0471240:three_prime_UTR 60.0%
GCCACTAGCCAAACCAGTGG+AGG - chr3_3:73448660-73448679 Msa0471240:three_prime_UTR 60.0%
GGCTGCCAACATTCCTCCAC+TGG + chr3_3:73448676-73448695 None:intergenic 60.0%
GATGGGGTTGGAGACGAGAC+TGG - chr3_3:73448865-73448884 Msa0471240:CDS 60.0%
GAGCGTGTCCATACAGCCCA+TGG + chr3_3:73448904-73448923 None:intergenic 60.0%
GGGCTGTATGGACACGCTCT+TGG - chr3_3:73448905-73448924 Msa0471240:CDS 60.0%
GCTGCCACTAGCCAAACCAG+TGG - chr3_3:73448657-73448676 Msa0471240:three_prime_UTR 60.0%
GCCACTAGCCAAACCAGTGG+AGG - chr3_3:73448660-73448679 Msa0471240:three_prime_UTR 60.0%
GGCTGCCAACATTCCTCCAC+TGG + chr3_3:73448676-73448695 None:intergenic 60.0%
GATGGGGTTGGAGACGAGAC+TGG - chr3_3:73448865-73448884 Msa0471240:CDS 60.0%
GAGCGTGTCCATACAGCCCA+TGG + chr3_3:73448904-73448923 None:intergenic 60.0%
GGGCTGTATGGACACGCTCT+TGG - chr3_3:73448905-73448924 Msa0471240:CDS 60.0%
GACACGCTCTTGGACGGCTG+AGG - chr3_3:73448915-73448934 Msa0471240:CDS 65.0%
GACACGCTCTTGGACGGCTG+AGG - chr3_3:73448915-73448934 Msa0471240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73448470 73450628 73448470 ID=Msa0471240;Name=Msa0471240
chr3_3 mRNA 73448470 73450628 73448470 ID=Msa0471240-mRNA-1;Parent=Msa0471240;Name=Msa0471240-mRNA-1;_AED=0.32;_eAED=0.32;_QI=20|1|1|1|1|1|2|241|369
chr3_3 exon 73448470 73449268 73448470 ID=Msa0471240-mRNA-1:exon:18648;Parent=Msa0471240-mRNA-1
chr3_3 exon 73450057 73450628 73450057 ID=Msa0471240-mRNA-1:exon:18647;Parent=Msa0471240-mRNA-1
chr3_3 five_prime_UTR 73450609 73450628 73450609 ID=Msa0471240-mRNA-1:five_prime_utr;Parent=Msa0471240-mRNA-1
chr3_3 CDS 73450057 73450608 73450057 ID=Msa0471240-mRNA-1:cds;Parent=Msa0471240-mRNA-1
chr3_3 CDS 73448711 73449268 73448711 ID=Msa0471240-mRNA-1:cds;Parent=Msa0471240-mRNA-1
chr3_3 three_prime_UTR 73448470 73448710 73448470 ID=Msa0471240-mRNA-1:three_prime_utr;Parent=Msa0471240-mRNA-1
Gene Sequence

>Msa0471240

ATGATGATGGCAATGTGCACTCAATTAGGACCACGTGCGTGGATTCTACCACAATGCCATCTAAAGGCCCCGTCCCAAAAAGTCCTAAAATCCCAAAAGACATACTCAATGTCTCCCGAAAAGAAAGAAATTTTCAAGTCATTAGAGAGTTGGGTATCAGAAAGTGTGCTGCCACTAGCCAAACCAGTGGAGGAATGTTGGCAGCCACATGATTTGTTGCCAGACTCTTCACTACCGTCGGACGAGTTCATCGATCAAGTGAAGGCATTAAGGGATCGAACGGCTGAGCTTCCAAACGATTATTTTGTAGTTTTAGTGGGTGACATGATCACCGAGGAAGCATTGCCAACGTACCAATCATGGTTTAACAGACTGGATGGGGTTGGAGACGAGACTGGTTCAAGCACCAATCCATGGGCTGTATGGACACGCTCTTGGACGGCTGAGGAGAATAGGCATGGAGATTTGCTCAAAACATATCTCTATCTTTCGGGTCGGGTTGATATGTTCATGGTCGAAAAGACTATCCAATACTTAATTAGAGCTGGCATGGATATAGGAACAGGAAGTAATCCATACAAGGCTTTTGCTTATGCAGCCTTCCAAGAGCGAGCCACTTTTCTGTCAGACGGCAGCATGGCTCGACTAGCTAAGGAGAGAGGTGATCCAACGCTTGCATGTATATGTGGCACGATTGCTGCAGACGAGAAGCGCCACGAGATTGCATATGAGAGGATCATTGCAAAACTTCTAGAGGTGGACCCCACAGAGACGATGACAGCGATAGCAGAAATTATGAGTAACCATATAACAATGCCCGGACACTTGATGCATGATGGTCAAGACCCACACCTATTCAGTCATTTCTCTGCAGTGGCACAACGTATTGGTGTGTACACGGTTAGTGACTACATCGATAGCTTGGAGTTCTTGATTGGACGTTGGAGATTGGAGAAGCTAGAGGGTTTGACAAGCGAGGGAAAGCGTGCACAAGAGATCGTGTGTGGGCTTGCACCCAAGATTAGGAGGCTGCAAGAGCGTGCTGATGAGCGAGCGAGAAAGATGAAACCTAAGTTTAGTTGGGTCTTCGATAAAGAGATGTCCAAATGA
Protein sequence

>Msa0471240

MMMAMCTQLGPRAWILPQCHLKAPSQKVLKSQKTYSMSPEKKEIFKSLESWVSESVLPLAKPVEECWQPHDLLPDSSLPSDEFIDQVKALRDRTAELPNDYFVVLVGDMITEEALPTYQSWFNRLDGVGDETGSSTNPWAVWTRSWTAEENRHGDLLKTYLYLSGRVDMFMVEKTIQYLIRAGMDIGTGSNPYKAFAYAAFQERATFLSDGSMARLAKERGDPTLACICGTIAADEKRHEIAYERIIAKLLEVDPTETMTAIAEIMSNHITMPGHLMHDGQDPHLFSHFSAVAQRIGVYTVSDYIDSLEFLIGRWRLEKLEGLTSEGKRAQEIVCGLAPKIRRLQERADERARKMKPKFSWVFDKEMSK*