Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476590 | XP_003603204.2 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 7.78e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476590 | A0A396J0V3 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 3.72e-177 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084500 | Msa0476590 | 0.801893 | 7.261613e-49 | -8.615850e-47 |
| Msa0130570 | Msa0476590 | 0.802398 | 5.716584e-49 | -8.615850e-47 |
| Msa0176470 | Msa0476590 | 0.846102 | 2.681740e-59 | -8.615850e-47 |
| Msa0203030 | Msa0476590 | 0.816025 | 6.840392e-52 | -8.615850e-47 |
| Msa0219190 | Msa0476590 | 0.803410 | 3.532284e-49 | -8.615850e-47 |
| Msa0236110 | Msa0476590 | 0.815425 | 9.307399e-52 | -8.615850e-47 |
| Msa0373960 | Msa0476590 | 0.803803 | 2.928903e-49 | -8.615850e-47 |
| Msa0382010 | Msa0476590 | 0.910322 | 2.131565e-82 | -8.615850e-47 |
| Msa0469260 | Msa0476590 | 0.805595 | 1.237631e-49 | -8.615850e-47 |
| Msa0476590 | Msa0520510 | 0.901907 | 1.664766e-78 | -8.615850e-47 |
| Msa0476590 | Msa0575740 | 0.805685 | 1.184573e-49 | -8.615850e-47 |
| Msa0476590 | Msa0622410 | 0.808632 | 2.815324e-50 | -8.615850e-47 |
| Msa0476590 | Msa0667850 | 0.819185 | 1.326345e-52 | -8.615850e-47 |
| Msa0476590 | Msa0669840 | 0.804616 | 1.982987e-49 | -8.615850e-47 |
| Msa0476590 | Msa0823400 | 0.802198 | 6.286382e-49 | -8.615850e-47 |
| Msa0476590 | Msa0885060 | 0.827060 | 1.927439e-54 | -8.615850e-47 |
| Msa0476590 | Msa0999350 | 0.822026 | 2.952164e-53 | -8.615850e-47 |
| Msa0476590 | Msa0999400 | 0.812611 | 3.886049e-51 | -8.615850e-47 |
| Msa0476590 | Msa1033560 | 0.831708 | 1.431859e-55 | -8.615850e-47 |
| Msa0476590 | Msa1073340 | 0.847609 | 1.037538e-59 | -8.615850e-47 |
| Msa0476590 | Msa1073350 | 0.808436 | 3.099648e-50 | -8.615850e-47 |
| Msa0476590 | Msa1113850 | 0.824879 | 6.352531e-54 | -8.615850e-47 |
| Msa0476590 | Msa1160400 | 0.822155 | 2.755782e-53 | -8.615850e-47 |
| Msa0476590 | Msa1228190 | 0.802131 | 6.487393e-49 | -8.615850e-47 |
| Msa0476590 | Msa1271260 | 0.814774 | 1.297980e-51 | -8.615850e-47 |
| Msa0476590 | Msa1294290 | 0.804022 | 2.637034e-49 | -8.615850e-47 |
| Msa0476590 | Msa1420060 | 0.817462 | 3.256825e-52 | -8.615850e-47 |
| Msa0476590 | Msa1421550 | 0.811097 | 8.301442e-51 | -8.615850e-47 |
| Msa0273990 | Msa0476590 | 0.806235 | 9.077718e-50 | -8.615850e-47 |
| Msa0277290 | Msa0476590 | 0.800978 | 1.118476e-48 | -8.615850e-47 |
| Msa0298240 | Msa0476590 | 0.806645 | 7.440143e-50 | -8.615850e-47 |
| Msa0311690 | Msa0476590 | 0.808689 | 2.737571e-50 | -8.615850e-47 |
| Msa0314630 | Msa0476590 | 0.812483 | 4.144474e-51 | -8.615850e-47 |
| Msa0322830 | Msa0476590 | 0.803515 | 3.359857e-49 | -8.615850e-47 |
| Msa0322860 | Msa0476590 | 0.814459 | 1.524068e-51 | -8.615850e-47 |
| Msa0351770 | Msa0476590 | 0.802518 | 5.400278e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476590 | MtrunA17_Chr3g0136271 | 93.680 | 269 | 16 | 1 | 1 | 268 | 1 | 269 | 0.0 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAACAAACACATTCTT+TGG | 0.164595 | 3_3:-80425307 | Msa0476590:CDS |
| TGGTTTGGGGTTAAGGTATT+TGG | 0.200138 | 3_3:+80425471 | None:intergenic |
| GATGCGAAAGAAGAGATTTA+AGG | 0.234830 | 3_3:-80424619 | Msa0476590:CDS |
| AAAGAACCAAGTGGACTAAA+AGG | 0.243462 | 3_3:+80425693 | None:intergenic |
| ATGAATGTGGTTTGGGGTTA+AGG | 0.264464 | 3_3:+80425464 | None:intergenic |
| GGATACAGAGGGAAGAAAAT+TGG | 0.293718 | 3_3:-80424482 | Msa0476590:CDS |
| TTCTTGATAAAGGATGTTAT+TGG | 0.304540 | 3_3:+80425536 | None:intergenic |
| TGAGTTTCTGTTCTTGATAA+AGG | 0.309215 | 3_3:+80425526 | None:intergenic |
| TCCAGCATTGCGAAAATAAC+TGG | 0.323075 | 3_3:-80424369 | Msa0476590:CDS |
| TAGGGTGATGAATGTGGTTT+GGG | 0.329828 | 3_3:+80425457 | None:intergenic |
| AATGATAGTGTTGGAGAATA+GGG | 0.371956 | 3_3:+80425439 | None:intergenic |
| GGAAAACAACGAGAGATGTT+TGG | 0.402412 | 3_3:-80424742 | Msa0476590:CDS |
| ATTTGGAGGGTTGTTGAGAA+TGG | 0.404444 | 3_3:+80425488 | None:intergenic |
| TTATTGGCCATTTCATTGTA+AGG | 0.404515 | 3_3:+80425552 | None:intergenic |
| TTGGTGATTAACCACAGTTT+TGG | 0.419669 | 3_3:+80424557 | None:intergenic |
| TGGACTAAAAGGGTTGGGTT+GGG | 0.422145 | 3_3:+80425704 | None:intergenic |
| TAATGATAGTGTTGGAGAAT+AGG | 0.423149 | 3_3:+80425438 | None:intergenic |
| GGTTCTTCAGAAGAAATTGT+TGG | 0.438181 | 3_3:-80424532 | Msa0476590:CDS |
| CTAGATGATACAAGAAAGAA+TGG | 0.440306 | 3_3:+80425632 | None:intergenic |
| CAACAACAAACACATTCTTT+GGG | 0.448951 | 3_3:-80425306 | Msa0476590:CDS |
| TGAGAATGGAACCATCATCT+AGG | 0.456014 | 3_3:+80425502 | None:intergenic |
| TTGGTTTCCGACAACAACTT+TGG | 0.462012 | 3_3:-80424723 | Msa0476590:CDS |
| ATAGGGTGATGAATGTGGTT+TGG | 0.467705 | 3_3:+80425456 | None:intergenic |
| GTTGGAGGTGATTGATAGAA+TGG | 0.468582 | 3_3:-80424514 | Msa0476590:CDS |
| GTGATGGTTGAAATTTATGT+TGG | 0.470837 | 3_3:+80425331 | None:intergenic |
| ATTTCTTCTGAAGAACCTCT+TGG | 0.473081 | 3_3:+80424538 | None:intergenic |
| AAGCTCACCAAAGTTGTTGT+CGG | 0.473825 | 3_3:+80424716 | None:intergenic |
| TGTGTTTGTTGTTGTTGTGA+TGG | 0.481062 | 3_3:+80425315 | None:intergenic |
| CTTGAAGCTGTGTACAAACT+TGG | 0.499197 | 3_3:-80424696 | Msa0476590:CDS |
| GATGCATCCTTACAATGAAA+TGG | 0.499586 | 3_3:-80425559 | Msa0476590:CDS |
| GTGGACTAAAAGGGTTGGGT+TGG | 0.506990 | 3_3:+80425703 | None:intergenic |
| AAGAACCAAGTGGACTAAAA+GGG | 0.516943 | 3_3:+80425694 | None:intergenic |
| TTTGGGGTTAAGGTATTTGG+AGG | 0.518321 | 3_3:+80425474 | None:intergenic |
| CCAAGTGGACTAAAAGGGTT+GGG | 0.519389 | 3_3:+80425699 | None:intergenic |
| AGGAACATGATTCGAAGAGA+AGG | 0.540619 | 3_3:-80424653 | Msa0476590:CDS |
| CAGAAACTCACCCTAGATGA+TGG | 0.541007 | 3_3:-80425513 | Msa0476590:CDS |
| ACACTTAAGATTCAATGCTC+TGG | 0.547550 | 3_3:+80425585 | None:intergenic |
| ATGATTCGAAGAGAAGGGCT+AGG | 0.550539 | 3_3:-80424647 | Msa0476590:CDS |
| ACCAAGTGGACTAAAAGGGT+TGG | 0.556355 | 3_3:+80425698 | None:intergenic |
| TCTTCAGAAGAAATTGTTGG+AGG | 0.567079 | 3_3:-80424529 | Msa0476590:CDS |
| GAGAATGGAACCATCATCTA+GGG | 0.574060 | 3_3:+80425503 | None:intergenic |
| GGAACATGATTCGAAGAGAA+GGG | 0.586343 | 3_3:-80424652 | Msa0476590:CDS |
| TTGGGGTTAAGGTATTTGGA+GGG | 0.595336 | 3_3:+80425475 | None:intergenic |
| GGAGAATAGGGTGATGAATG+TGG | 0.595952 | 3_3:+80425451 | None:intergenic |
| TAGATGATACAAGAAAGAAT+GGG | 0.601225 | 3_3:+80425633 | None:intergenic |
| TAAAAGATTGACCAAAACTG+TGG | 0.602456 | 3_3:-80424568 | Msa0476590:CDS |
| TACAGAGGGAAGAAAATTGG+AGG | 0.605765 | 3_3:-80424479 | Msa0476590:CDS |
| AATCGTTATATCGAATGCGA+AGG | 0.628296 | 3_3:-80425270 | Msa0476590:CDS |
| ACACACAACAACAGAAAGAA+CGG | 0.629520 | 3_3:-80425398 | Msa0476590:CDS |
| TAAGATTCAATGCTCTGGTG+CGG | 0.646357 | 3_3:+80425590 | None:intergenic |
| ATTGTGAGTAATGATAGTGT+TGG | 0.653355 | 3_3:+80425430 | None:intergenic |
| AACTGTGGTTAATCACCAAG+AGG | 0.665729 | 3_3:-80424553 | Msa0476590:CDS |
| AGGGTGATGAATGTGGTTTG+GGG | 0.692532 | 3_3:+80425458 | None:intergenic |
| TAGGAAAGCATTCAACAACA+CGG | 0.710634 | 3_3:-80424802 | Msa0476590:CDS |
| GGAAGACTGAAAGAACCAAG+TGG | 0.719116 | 3_3:+80425684 | None:intergenic |
| TCAGAATCAAGCGTTCACTG+AGG | 0.786263 | 3_3:-80424673 | Msa0476590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAAAATATTTATCAC+GGG | + | chr3_3:80425137-80425156 | None:intergenic | 15.0% |
| !! | GTCATTAAAAATATTTATCA+CGG | + | chr3_3:80425138-80425157 | None:intergenic | 15.0% |
| !! | TCATTAAAAATATTTATCAC+GGG | + | chr3_3:80425137-80425156 | None:intergenic | 15.0% |
| !! | GTCATTAAAAATATTTATCA+CGG | + | chr3_3:80425138-80425157 | None:intergenic | 15.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_3:80424416-80424435 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_3:80424513-80424532 | None:intergenic | 25.0% |
| !! | ACATTTTTATCAATCACATG+AGG | - | chr3_3:80424688-80424707 | Msa0476590:CDS | 25.0% |
| !!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_3:80424913-80424932 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | + | chr3_3:80424946-80424965 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | + | chr3_3:80424947-80424966 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | + | chr3_3:80425213-80425232 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | - | chr3_3:80425283-80425302 | Msa0476590:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_3:80425543-80425562 | Msa0476590:CDS | 25.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_3:80424416-80424435 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_3:80424513-80424532 | None:intergenic | 25.0% |
| !! | ACATTTTTATCAATCACATG+AGG | - | chr3_3:80424688-80424707 | Msa0476590:CDS | 25.0% |
| !!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_3:80424913-80424932 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | + | chr3_3:80424946-80424965 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | + | chr3_3:80424947-80424966 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | + | chr3_3:80425213-80425232 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | - | chr3_3:80425283-80425302 | Msa0476590:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_3:80425543-80425562 | Msa0476590:CDS | 25.0% |
| ! | AAACAGTACATTTGCGTTTT+TGG | + | chr3_3:80424386-80424405 | None:intergenic | 30.0% |
| CTAGATGATACAAGAAAGAA+TGG | + | chr3_3:80424417-80424436 | None:intergenic | 30.0% | |
| TTATTGGCCATTTCATTGTA+AGG | + | chr3_3:80424497-80424516 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_3:80424523-80424542 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_3:80424610-80424629 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_3:80424611-80424630 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_3:80424619-80424638 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | + | chr3_3:80424718-80424737 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | - | chr3_3:80424739-80424758 | Msa0476590:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | - | chr3_3:80424740-80424759 | Msa0476590:CDS | 30.0% | |
| TATAATGTGGGTGTATATGT+TGG | + | chr3_3:80424934-80424953 | None:intergenic | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | + | chr3_3:80424985-80425004 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | + | chr3_3:80424986-80425005 | None:intergenic | 30.0% | |
| GCAATTAGTATAGGAGATAT+AGG | - | chr3_3:80425088-80425107 | Msa0476590:intron | 30.0% | |
| !! | AATATTTATCACGGGTTGAT+AGG | + | chr3_3:80425129-80425148 | None:intergenic | 30.0% |
| CACATTATGTATGTTTGTGT+TGG | - | chr3_3:80425215-80425234 | Msa0476590:intron | 30.0% | |
| !! | ATGTTTGTGTTGGCATTTTT+AGG | - | chr3_3:80425225-80425244 | Msa0476590:intron | 30.0% |
| TAAAAGATTGACCAAAACTG+TGG | - | chr3_3:80425478-80425497 | Msa0476590:CDS | 30.0% | |
| ! | AAACAGTACATTTGCGTTTT+TGG | + | chr3_3:80424386-80424405 | None:intergenic | 30.0% |
| CTAGATGATACAAGAAAGAA+TGG | + | chr3_3:80424417-80424436 | None:intergenic | 30.0% | |
| TTATTGGCCATTTCATTGTA+AGG | + | chr3_3:80424497-80424516 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_3:80424523-80424542 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_3:80424610-80424629 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_3:80424611-80424630 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_3:80424619-80424638 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | + | chr3_3:80424718-80424737 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | - | chr3_3:80424739-80424758 | Msa0476590:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | - | chr3_3:80424740-80424759 | Msa0476590:CDS | 30.0% | |
| TATAATGTGGGTGTATATGT+TGG | + | chr3_3:80424934-80424953 | None:intergenic | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | + | chr3_3:80424985-80425004 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | + | chr3_3:80424986-80425005 | None:intergenic | 30.0% | |
| GCAATTAGTATAGGAGATAT+AGG | - | chr3_3:80425088-80425107 | Msa0476590:intron | 30.0% | |
| !! | AATATTTATCACGGGTTGAT+AGG | + | chr3_3:80425129-80425148 | None:intergenic | 30.0% |
| CACATTATGTATGTTTGTGT+TGG | - | chr3_3:80425215-80425234 | Msa0476590:intron | 30.0% | |
| !! | ATGTTTGTGTTGGCATTTTT+AGG | - | chr3_3:80425225-80425244 | Msa0476590:intron | 30.0% |
| TAAAAGATTGACCAAAACTG+TGG | - | chr3_3:80425478-80425497 | Msa0476590:CDS | 30.0% | |
| !! | AAGAACCAAGTGGACTAAAA+GGG | + | chr3_3:80424355-80424374 | None:intergenic | 35.0% |
| !! | AAAGAACCAAGTGGACTAAA+AGG | + | chr3_3:80424356-80424375 | None:intergenic | 35.0% |
| ACACTTAAGATTCAATGCTC+TGG | + | chr3_3:80424464-80424483 | None:intergenic | 35.0% | |
| GATGCATCCTTACAATGAAA+TGG | - | chr3_3:80424487-80424506 | Msa0476590:CDS | 35.0% | |
| ACACACAACAACAGAAAGAA+CGG | - | chr3_3:80424648-80424667 | Msa0476590:CDS | 35.0% | |
| !! | TGTGTTTGTTGTTGTTGTGA+TGG | + | chr3_3:80424734-80424753 | None:intergenic | 35.0% |
| AATCGTTATATCGAATGCGA+AGG | - | chr3_3:80424776-80424795 | Msa0476590:CDS | 35.0% | |
| CCAAAAAGATACTCTAGCAT+TGG | + | chr3_3:80424804-80424823 | None:intergenic | 35.0% | |
| !! | CCAATGCTAGAGTATCTTTT+TGG | - | chr3_3:80424801-80424820 | Msa0476590:CDS | 35.0% |
| CCGGAATAAATGTACAAATC+TGG | - | chr3_3:80424983-80425002 | Msa0476590:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | - | chr3_3:80425038-80425057 | Msa0476590:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | + | chr3_3:80425046-80425065 | None:intergenic | 35.0% | |
| ACAAGACCAATACATCAAGA+TGG | + | chr3_3:80425047-80425066 | None:intergenic | 35.0% | |
| TTCGCTTTCGCAATTAGTAT+AGG | - | chr3_3:80425079-80425098 | Msa0476590:intron | 35.0% | |
| !! | TAGGAAAGCATTCAACAACA+CGG | - | chr3_3:80425244-80425263 | Msa0476590:intron | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | - | chr3_3:80425427-80425446 | Msa0476590:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_3:80425492-80425511 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_3:80425511-80425530 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_3:80425514-80425533 | Msa0476590:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_3:80425517-80425536 | Msa0476590:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | - | chr3_3:80425552-80425571 | Msa0476590:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | - | chr3_3:80425553-80425572 | Msa0476590:CDS | 35.0% | |
| !!! | TGGTCGAAGATTTTCTAGTT+TGG | - | chr3_3:80425697-80425716 | Msa0476590:five_prime_UTR | 35.0% |
| !!! | GGTCGAAGATTTTCTAGTTT+GGG | - | chr3_3:80425698-80425717 | Msa0476590:five_prime_UTR | 35.0% |
| !! | AAGAACCAAGTGGACTAAAA+GGG | + | chr3_3:80424355-80424374 | None:intergenic | 35.0% |
| !! | AAAGAACCAAGTGGACTAAA+AGG | + | chr3_3:80424356-80424375 | None:intergenic | 35.0% |
| ACACTTAAGATTCAATGCTC+TGG | + | chr3_3:80424464-80424483 | None:intergenic | 35.0% | |
| GATGCATCCTTACAATGAAA+TGG | - | chr3_3:80424487-80424506 | Msa0476590:CDS | 35.0% | |
| ACACACAACAACAGAAAGAA+CGG | - | chr3_3:80424648-80424667 | Msa0476590:CDS | 35.0% | |
| !! | TGTGTTTGTTGTTGTTGTGA+TGG | + | chr3_3:80424734-80424753 | None:intergenic | 35.0% |
| AATCGTTATATCGAATGCGA+AGG | - | chr3_3:80424776-80424795 | Msa0476590:CDS | 35.0% | |
| CCAAAAAGATACTCTAGCAT+TGG | + | chr3_3:80424804-80424823 | None:intergenic | 35.0% | |
| !! | CCAATGCTAGAGTATCTTTT+TGG | - | chr3_3:80424801-80424820 | Msa0476590:CDS | 35.0% |
| CCGGAATAAATGTACAAATC+TGG | - | chr3_3:80424983-80425002 | Msa0476590:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | - | chr3_3:80425038-80425057 | Msa0476590:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | + | chr3_3:80425046-80425065 | None:intergenic | 35.0% | |
| ACAAGACCAATACATCAAGA+TGG | + | chr3_3:80425047-80425066 | None:intergenic | 35.0% | |
| TTCGCTTTCGCAATTAGTAT+AGG | - | chr3_3:80425079-80425098 | Msa0476590:intron | 35.0% | |
| !! | TAGGAAAGCATTCAACAACA+CGG | - | chr3_3:80425244-80425263 | Msa0476590:intron | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | - | chr3_3:80425427-80425446 | Msa0476590:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_3:80425492-80425511 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_3:80425511-80425530 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_3:80425514-80425533 | Msa0476590:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_3:80425517-80425536 | Msa0476590:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | - | chr3_3:80425552-80425571 | Msa0476590:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | - | chr3_3:80425553-80425572 | Msa0476590:CDS | 35.0% | |
| !!! | TGGTCGAAGATTTTCTAGTT+TGG | - | chr3_3:80425697-80425716 | Msa0476590:five_prime_UTR | 35.0% |
| !!! | GGTCGAAGATTTTCTAGTTT+GGG | - | chr3_3:80425698-80425717 | Msa0476590:five_prime_UTR | 35.0% |
| TAAGATTCAATGCTCTGGTG+CGG | + | chr3_3:80424459-80424478 | None:intergenic | 40.0% | |
| GAGAATGGAACCATCATCTA+GGG | + | chr3_3:80424546-80424565 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | + | chr3_3:80424547-80424566 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_3:80424561-80424580 | None:intergenic | 40.0% | |
| ! | TTGGGGTTAAGGTATTTGGA+GGG | + | chr3_3:80424574-80424593 | None:intergenic | 40.0% |
| ! | TTTGGGGTTAAGGTATTTGG+AGG | + | chr3_3:80424575-80424594 | None:intergenic | 40.0% |
| ! | TGGTTTGGGGTTAAGGTATT+TGG | + | chr3_3:80424578-80424597 | None:intergenic | 40.0% |
| ! | ATGAATGTGGTTTGGGGTTA+AGG | + | chr3_3:80424585-80424604 | None:intergenic | 40.0% |
| TAGGGTGATGAATGTGGTTT+GGG | + | chr3_3:80424592-80424611 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | + | chr3_3:80424593-80424612 | None:intergenic | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | + | chr3_3:80424973-80424992 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_3:80424994-80425013 | Msa0476590:intron | 40.0% |
| GGAAAACAACGAGAGATGTT+TGG | - | chr3_3:80425304-80425323 | Msa0476590:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | - | chr3_3:80425323-80425342 | Msa0476590:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_3:80425333-80425352 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | - | chr3_3:80425350-80425369 | Msa0476590:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | - | chr3_3:80425393-80425412 | Msa0476590:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | - | chr3_3:80425394-80425413 | Msa0476590:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | - | chr3_3:80425493-80425512 | Msa0476590:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | - | chr3_3:80425532-80425551 | Msa0476590:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | - | chr3_3:80425564-80425583 | Msa0476590:exon | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | - | chr3_3:80425567-80425586 | Msa0476590:exon | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_3:80425636-80425655 | Msa0476590:five_prime_UTR | 40.0% |
| TCCAGCATTGCGAAAATAAC+TGG | - | chr3_3:80425677-80425696 | Msa0476590:five_prime_UTR | 40.0% | |
| !! | ACCAGTTATTTTCGCAATGC+TGG | + | chr3_3:80425681-80425700 | None:intergenic | 40.0% |
| TAAGATTCAATGCTCTGGTG+CGG | + | chr3_3:80424459-80424478 | None:intergenic | 40.0% | |
| GAGAATGGAACCATCATCTA+GGG | + | chr3_3:80424546-80424565 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | + | chr3_3:80424547-80424566 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_3:80424561-80424580 | None:intergenic | 40.0% | |
| ! | TTGGGGTTAAGGTATTTGGA+GGG | + | chr3_3:80424574-80424593 | None:intergenic | 40.0% |
| ! | TTTGGGGTTAAGGTATTTGG+AGG | + | chr3_3:80424575-80424594 | None:intergenic | 40.0% |
| ! | TGGTTTGGGGTTAAGGTATT+TGG | + | chr3_3:80424578-80424597 | None:intergenic | 40.0% |
| ! | ATGAATGTGGTTTGGGGTTA+AGG | + | chr3_3:80424585-80424604 | None:intergenic | 40.0% |
| TAGGGTGATGAATGTGGTTT+GGG | + | chr3_3:80424592-80424611 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | + | chr3_3:80424593-80424612 | None:intergenic | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | + | chr3_3:80424973-80424992 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_3:80424994-80425013 | Msa0476590:intron | 40.0% |
| GGAAAACAACGAGAGATGTT+TGG | - | chr3_3:80425304-80425323 | Msa0476590:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | - | chr3_3:80425323-80425342 | Msa0476590:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_3:80425333-80425352 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | - | chr3_3:80425350-80425369 | Msa0476590:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | - | chr3_3:80425393-80425412 | Msa0476590:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | - | chr3_3:80425394-80425413 | Msa0476590:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | - | chr3_3:80425493-80425512 | Msa0476590:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | - | chr3_3:80425532-80425551 | Msa0476590:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | - | chr3_3:80425564-80425583 | Msa0476590:exon | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | - | chr3_3:80425567-80425586 | Msa0476590:exon | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_3:80425636-80425655 | Msa0476590:five_prime_UTR | 40.0% |
| TCCAGCATTGCGAAAATAAC+TGG | - | chr3_3:80425677-80425696 | Msa0476590:five_prime_UTR | 40.0% | |
| !! | ACCAGTTATTTTCGCAATGC+TGG | + | chr3_3:80425681-80425700 | None:intergenic | 40.0% |
| TGGACTAAAAGGGTTGGGTT+GGG | + | chr3_3:80424345-80424364 | None:intergenic | 45.0% | |
| !! | CCAAGTGGACTAAAAGGGTT+GGG | + | chr3_3:80424350-80424369 | None:intergenic | 45.0% |
| !! | ACCAAGTGGACTAAAAGGGT+TGG | + | chr3_3:80424351-80424370 | None:intergenic | 45.0% |
| GGAAGACTGAAAGAACCAAG+TGG | + | chr3_3:80424365-80424384 | None:intergenic | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | - | chr3_3:80424533-80424552 | Msa0476590:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | + | chr3_3:80424591-80424610 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | + | chr3_3:80424598-80424617 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | - | chr3_3:80424964-80424983 | Msa0476590:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | - | chr3_3:80425373-80425392 | Msa0476590:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_3:80425399-80425418 | Msa0476590:CDS | 45.0% | |
| TGGACTAAAAGGGTTGGGTT+GGG | + | chr3_3:80424345-80424364 | None:intergenic | 45.0% | |
| !! | CCAAGTGGACTAAAAGGGTT+GGG | + | chr3_3:80424350-80424369 | None:intergenic | 45.0% |
| !! | ACCAAGTGGACTAAAAGGGT+TGG | + | chr3_3:80424351-80424370 | None:intergenic | 45.0% |
| GGAAGACTGAAAGAACCAAG+TGG | + | chr3_3:80424365-80424384 | None:intergenic | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | - | chr3_3:80424533-80424552 | Msa0476590:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | + | chr3_3:80424591-80424610 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | + | chr3_3:80424598-80424617 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | - | chr3_3:80424964-80424983 | Msa0476590:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | - | chr3_3:80425373-80425392 | Msa0476590:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_3:80425399-80425418 | Msa0476590:CDS | 45.0% | |
| ! | GTGGACTAAAAGGGTTGGGT+TGG | + | chr3_3:80424346-80424365 | None:intergenic | 50.0% |
| ! | CCCAACCCTTTTAGTCCACT+TGG | - | chr3_3:80424347-80424366 | Msa0476590:CDS | 50.0% |
| ! | GTGGACTAAAAGGGTTGGGT+TGG | + | chr3_3:80424346-80424365 | None:intergenic | 50.0% |
| ! | CCCAACCCTTTTAGTCCACT+TGG | - | chr3_3:80424347-80424366 | Msa0476590:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 80424341 | 80425727 | 80424341 | ID=Msa0476590;Name=Msa0476590 |
| chr3_3 | mRNA | 80424341 | 80425727 | 80424341 | ID=Msa0476590-mRNA-1;Parent=Msa0476590;Name=Msa0476590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|0.5|1|1|1|2|0|271 |
| chr3_3 | exon | 80424341 | 80424821 | 80424341 | ID=Msa0476590-mRNA-1:exon:22025;Parent=Msa0476590-mRNA-1 |
| chr3_3 | exon | 80425246 | 80425727 | 80425246 | ID=Msa0476590-mRNA-1:exon:22024;Parent=Msa0476590-mRNA-1 |
| chr3_3 | five_prime_UTR | 80425581 | 80425727 | 80425581 | ID=Msa0476590-mRNA-1:five_prime_utr;Parent=Msa0476590-mRNA-1 |
| chr3_3 | CDS | 80425246 | 80425580 | 80425246 | ID=Msa0476590-mRNA-1:cds;Parent=Msa0476590-mRNA-1 |
| chr3_3 | CDS | 80424341 | 80424821 | 80424341 | ID=Msa0476590-mRNA-1:cds;Parent=Msa0476590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
