Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382010 | XP_003603204.2 | 93.333 | 270 | 16 | 2 | 1 | 269 | 1 | 269 | 6.81e-174 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382010 | A0A396J0V3 | 93.333 | 270 | 16 | 2 | 1 | 269 | 1 | 269 | 3.25e-174 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa0382010 | 0.813364 | 2.657542e-51 | -8.615850e-47 |
| Msa0050040 | Msa0382010 | 0.820092 | 8.232313e-53 | -8.615850e-47 |
| Msa0084500 | Msa0382010 | 0.822350 | 2.483085e-53 | -8.615850e-47 |
| Msa0098440 | Msa0382010 | 0.804431 | 2.167075e-49 | -8.615850e-47 |
| Msa0102990 | Msa0382010 | 0.820241 | 7.609403e-53 | -8.615850e-47 |
| Msa0130570 | Msa0382010 | 0.813137 | 2.980473e-51 | -8.615850e-47 |
| Msa0176470 | Msa0382010 | 0.830442 | 2.929969e-55 | -8.615850e-47 |
| Msa0194380 | Msa0382010 | 0.810949 | 8.936498e-51 | -8.615850e-47 |
| Msa0203030 | Msa0382010 | 0.825653 | 4.167561e-54 | -8.615850e-47 |
| Msa0219190 | Msa0382010 | 0.842930 | 1.914131e-58 | -8.615850e-47 |
| Msa0236110 | Msa0382010 | 0.804313 | 2.293394e-49 | -8.615850e-47 |
| Msa0373960 | Msa0382010 | 0.820995 | 5.106994e-53 | -8.615850e-47 |
| Msa0382010 | Msa0413930 | 0.816246 | 6.103664e-52 | -8.615850e-47 |
| Msa0382010 | Msa0423100 | 0.815023 | 1.143265e-51 | -8.615850e-47 |
| Msa0382010 | Msa0436500 | 0.803064 | 4.165490e-49 | -8.615850e-47 |
| Msa0382010 | Msa0441590 | 0.813148 | 2.963897e-51 | -8.615850e-47 |
| Msa0382010 | Msa0444010 | 0.805226 | 1.478659e-49 | -8.615850e-47 |
| Msa0382010 | Msa0451400 | 0.805155 | 1.530196e-49 | -8.615850e-47 |
| Msa0382010 | Msa0476590 | 0.910322 | 2.131565e-82 | -8.615850e-47 |
| Msa0382010 | Msa0520510 | 0.912401 | 2.031148e-83 | -8.615850e-47 |
| Msa0382010 | Msa0575740 | 0.825779 | 3.891693e-54 | -8.615850e-47 |
| Msa0382010 | Msa0591800 | 0.802584 | 5.233669e-49 | -8.615850e-47 |
| Msa0382010 | Msa0622410 | 0.802446 | 5.589146e-49 | -8.615850e-47 |
| Msa0382010 | Msa0667850 | 0.832338 | 1.000745e-55 | -8.615850e-47 |
| Msa0382010 | Msa0669840 | 0.829495 | 4.987319e-55 | -8.615850e-47 |
| Msa0382010 | Msa0691160 | 0.801406 | 9.139177e-49 | -8.615850e-47 |
| Msa0382010 | Msa0707220 | 0.811864 | 5.656013e-51 | -8.615850e-47 |
| Msa0382010 | Msa0741900 | 0.818066 | 2.379382e-52 | -8.615850e-47 |
| Msa0382010 | Msa0742180 | 0.813161 | 2.944526e-51 | -8.615850e-47 |
| Msa0382010 | Msa0764820 | 0.814381 | 1.586036e-51 | -8.615850e-47 |
| Msa0382010 | Msa0822990 | 0.804193 | 2.429972e-49 | -8.615850e-47 |
| Msa0382010 | Msa0823400 | 0.831195 | 1.915046e-55 | -8.615850e-47 |
| Msa0382010 | Msa0860170 | 0.838483 | 2.799990e-57 | -8.615850e-47 |
| Msa0382010 | Msa0862100 | 0.805500 | 1.295385e-49 | -8.615850e-47 |
| Msa0382010 | Msa0862310 | 0.818866 | 1.567602e-52 | -8.615850e-47 |
| Msa0382010 | Msa0867350 | 0.809035 | 2.308970e-50 | -8.615850e-47 |
| Msa0382010 | Msa0885060 | 0.860083 | 2.644589e-63 | -8.615850e-47 |
| Msa0382010 | Msa0898730 | 0.807005 | 6.241857e-50 | -8.615850e-47 |
| Msa0382010 | Msa0929870 | 0.829872 | 4.037501e-55 | -8.615850e-47 |
| Msa0382010 | Msa0961560 | 0.809971 | 1.453655e-50 | -8.615850e-47 |
| Msa0382010 | Msa0973250 | 0.825499 | 4.534019e-54 | -8.615850e-47 |
| Msa0382010 | Msa0979510 | 0.802705 | 4.941826e-49 | -8.615850e-47 |
| Msa0382010 | Msa0996270 | 0.814796 | 1.283717e-51 | -8.615850e-47 |
| Msa0382010 | Msa0999300 | 0.834599 | 2.730486e-56 | -8.615850e-47 |
| Msa0382010 | Msa0999350 | 0.800782 | 1.226263e-48 | -8.615850e-47 |
| Msa0382010 | Msa1001890 | 0.800586 | 1.344502e-48 | -8.615850e-47 |
| Msa0382010 | Msa1033560 | 0.836682 | 8.108240e-57 | -8.615850e-47 |
| Msa0382010 | Msa1037900 | 0.819471 | 1.141396e-52 | -8.615850e-47 |
| Msa0382010 | Msa1042670 | 0.826417 | 2.743758e-54 | -8.615850e-47 |
| Msa0382010 | Msa1073340 | 0.891819 | 2.803912e-74 | -8.615850e-47 |
| Msa0382010 | Msa1073350 | 0.822128 | 2.795087e-53 | -8.615850e-47 |
| Msa0382010 | Msa1081570 | 0.812977 | 3.231365e-51 | -8.615850e-47 |
| Msa0382010 | Msa1113850 | 0.844488 | 7.328971e-59 | -8.615850e-47 |
| Msa0382010 | Msa1127140 | 0.809808 | 1.575948e-50 | -8.615850e-47 |
| Msa0382010 | Msa1129960 | 0.806513 | 7.932394e-50 | -8.615850e-47 |
| Msa0382010 | Msa1145020 | 0.834845 | 2.367368e-56 | -8.615850e-47 |
| Msa0382010 | Msa1160400 | 0.823546 | 1.306973e-53 | -8.615850e-47 |
| Msa0382010 | Msa1166400 | 0.802610 | 5.169380e-49 | -8.615850e-47 |
| Msa0382010 | Msa1169990 | 0.819611 | 1.060353e-52 | -8.615850e-47 |
| Msa0382010 | Msa1201160 | 0.824804 | 6.617926e-54 | -8.615850e-47 |
| Msa0382010 | Msa1228190 | 0.813910 | 2.015044e-51 | -8.615850e-47 |
| Msa0382010 | Msa1271260 | 0.819693 | 1.015923e-52 | -8.615850e-47 |
| Msa0382010 | Msa1294290 | 0.836654 | 8.242711e-57 | -8.615850e-47 |
| Msa0382010 | Msa1305510 | 0.800022 | 1.751213e-48 | -8.615850e-47 |
| Msa0382010 | Msa1420060 | 0.854471 | 1.203805e-61 | -8.615850e-47 |
| Msa0382010 | Msa1421550 | 0.841054 | 5.995845e-58 | -8.615850e-47 |
| Msa0382010 | Msa1435480 | 0.807887 | 4.058766e-50 | -8.615850e-47 |
| Msa0252630 | Msa0382010 | 0.817327 | 3.492574e-52 | -8.615850e-47 |
| Msa0298240 | Msa0382010 | 0.847056 | 1.471928e-59 | -8.615850e-47 |
| Msa0311690 | Msa0382010 | 0.808157 | 3.555695e-50 | -8.615850e-47 |
| Msa0314630 | Msa0382010 | 0.815565 | 8.661870e-52 | -8.615850e-47 |
| Msa0322860 | Msa0382010 | 0.807248 | 5.544841e-50 | -8.615850e-47 |
| Msa0351770 | Msa0382010 | 0.817948 | 2.529827e-52 | -8.615850e-47 |
| Msa0359250 | Msa0382010 | 0.811310 | 7.464324e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382010 | MtrunA17_Chr3g0136271 | 93.333 | 270 | 16 | 2 | 1 | 269 | 1 | 269 | 6.26e-178 | 490 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382010 | AT1G76880.1 | 39.474 | 76 | 46 | 0 | 188 | 263 | 256 | 331 | 9.59e-11 | 62.4 |
Find 56 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAACAAACACATTCTT+TGG | 0.192209 | 3_1:-84460760 | Msa0382010:CDS |
| TGGTTTGGGGTTAAGGTATT+TGG | 0.200138 | 3_1:+84460927 | None:intergenic |
| GATGCGAAAGAAGAGATTTA+AGG | 0.234830 | 3_1:-84460072 | Msa0382010:CDS |
| AAAGAACCAAGTGGACTAAA+AGG | 0.243462 | 3_1:+84461149 | None:intergenic |
| ATGAATGTGGTTTGGGGTTA+AGG | 0.264464 | 3_1:+84460920 | None:intergenic |
| GGATACAGAGGGAAGAAAAT+TGG | 0.293718 | 3_1:-84459935 | Msa0382010:CDS |
| TTCTTGATAAAGGATGTTAT+TGG | 0.304540 | 3_1:+84460992 | None:intergenic |
| TGAGTTTCTGTTCTTGATAA+AGG | 0.309215 | 3_1:+84460982 | None:intergenic |
| TAGGGTGATGAATGTGGTTT+GGG | 0.329828 | 3_1:+84460913 | None:intergenic |
| TCCAGCATTGAGAAAATAAC+TGG | 0.347658 | 3_1:-84459822 | Msa0382010:CDS |
| AATGATAGTGTTGGAGAATA+GGG | 0.371956 | 3_1:+84460895 | None:intergenic |
| GGAAAACAACGAGAGATGTT+TGG | 0.402412 | 3_1:-84460195 | Msa0382010:CDS |
| ATTTGGAGGGTTGTTGAGAA+TGG | 0.404444 | 3_1:+84460944 | None:intergenic |
| TTATTGGCCATTTCATTGTA+AGG | 0.404515 | 3_1:+84461008 | None:intergenic |
| TTGGTGATTAACCACAGTTT+TGG | 0.419669 | 3_1:+84460010 | None:intergenic |
| TGGACTAAAAGGGTTGGGTT+GGG | 0.422145 | 3_1:+84461160 | None:intergenic |
| TAATGATAGTGTTGGAGAAT+AGG | 0.423149 | 3_1:+84460894 | None:intergenic |
| GGTTCTTCAGAAGAAATTGT+TGG | 0.438181 | 3_1:-84459985 | Msa0382010:CDS |
| CTAGATGATACAAGAAAGAA+TGG | 0.440306 | 3_1:+84461088 | None:intergenic |
| CAACAACAAACACATTCTTT+GGG | 0.448951 | 3_1:-84460759 | Msa0382010:CDS |
| TGAGAATGGAACCATCATCT+AGG | 0.456014 | 3_1:+84460958 | None:intergenic |
| TTGGTTTCCGACAACAACTT+TGG | 0.462012 | 3_1:-84460176 | Msa0382010:CDS |
| TTGTAAATCGTTATATCGAA+TGG | 0.463067 | 3_1:-84460728 | Msa0382010:CDS |
| ATAGGGTGATGAATGTGGTT+TGG | 0.467705 | 3_1:+84460912 | None:intergenic |
| GTTGGAGGTGATTGATAGAA+TGG | 0.468582 | 3_1:-84459967 | Msa0382010:CDS |
| GTGATGGTTGAAATTTATGT+TGG | 0.470837 | 3_1:+84460787 | None:intergenic |
| TGTAAATCGTTATATCGAAT+GGG | 0.471530 | 3_1:-84460727 | Msa0382010:CDS |
| ATTTCTTCTGAAGAACCTCT+TGG | 0.473081 | 3_1:+84459991 | None:intergenic |
| AAGCTCACCAAAGTTGTTGT+CGG | 0.473825 | 3_1:+84460169 | None:intergenic |
| CTTGAAGCTGTGTACAAACT+TGG | 0.499197 | 3_1:-84460149 | Msa0382010:CDS |
| GATGCATCCTTACAATGAAA+TGG | 0.499586 | 3_1:-84461015 | Msa0382010:CDS |
| GTGGACTAAAAGGGTTGGGT+TGG | 0.506990 | 3_1:+84461159 | None:intergenic |
| AAGAACCAAGTGGACTAAAA+GGG | 0.516943 | 3_1:+84461150 | None:intergenic |
| TTTGGGGTTAAGGTATTTGG+AGG | 0.518321 | 3_1:+84460930 | None:intergenic |
| CCAAGTGGACTAAAAGGGTT+GGG | 0.519389 | 3_1:+84461155 | None:intergenic |
| AGGAACATGATTCGAAGAGA+AGG | 0.540619 | 3_1:-84460106 | Msa0382010:CDS |
| CAGAAACTCACCCTAGATGA+TGG | 0.541007 | 3_1:-84460969 | Msa0382010:CDS |
| ACACTTAAGATTCAATGCTC+TGG | 0.547550 | 3_1:+84461041 | None:intergenic |
| ATGATTCGAAGAGAAGGGCT+AGG | 0.550539 | 3_1:-84460100 | Msa0382010:CDS |
| ACCAAGTGGACTAAAAGGGT+TGG | 0.556355 | 3_1:+84461154 | None:intergenic |
| TCTTCAGAAGAAATTGTTGG+AGG | 0.567079 | 3_1:-84459982 | Msa0382010:CDS |
| GAGAATGGAACCATCATCTA+GGG | 0.574060 | 3_1:+84460959 | None:intergenic |
| GGAACATGATTCGAAGAGAA+GGG | 0.586343 | 3_1:-84460105 | Msa0382010:CDS |
| TTGGGGTTAAGGTATTTGGA+GGG | 0.595336 | 3_1:+84460931 | None:intergenic |
| GGAGAATAGGGTGATGAATG+TGG | 0.595952 | 3_1:+84460907 | None:intergenic |
| TAGATGATACAAGAAAGAAT+GGG | 0.601225 | 3_1:+84461089 | None:intergenic |
| TAAAAGATTGACCAAAACTG+TGG | 0.602456 | 3_1:-84460021 | Msa0382010:CDS |
| TACAGAGGGAAGAAAATTGG+AGG | 0.605765 | 3_1:-84459932 | Msa0382010:CDS |
| AATCGTTATATCGAATGGGA+AGG | 0.622769 | 3_1:-84460723 | Msa0382010:CDS |
| ACACACAACAACAGAAAGAA+CGG | 0.629520 | 3_1:-84460854 | Msa0382010:CDS |
| ATTGTGAGTAATGATAGTGT+TGG | 0.653355 | 3_1:+84460886 | None:intergenic |
| AACTGTGGTTAATCACCAAG+AGG | 0.665729 | 3_1:-84460006 | Msa0382010:CDS |
| AGGGTGATGAATGTGGTTTG+GGG | 0.692532 | 3_1:+84460914 | None:intergenic |
| TAGGAAAGCATTCAACAACA+CGG | 0.710634 | 3_1:-84460255 | Msa0382010:CDS |
| GGAAGACTGAAAGAACCAAG+TGG | 0.719116 | 3_1:+84461140 | None:intergenic |
| TCAGAATCAAGCGTTCACTG+AGG | 0.786263 | 3_1:-84460126 | Msa0382010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAAAATATTTATCAC+GGG | + | chr3_1:84460593-84460612 | None:intergenic | 15.0% |
| !! | GTCATTAAAAATATTTATCA+CGG | + | chr3_1:84460594-84460613 | None:intergenic | 15.0% |
| !! | TCATTAAAAATATTTATCAC+GGG | + | chr3_1:84460593-84460612 | None:intergenic | 15.0% |
| !! | GTCATTAAAAATATTTATCA+CGG | + | chr3_1:84460594-84460613 | None:intergenic | 15.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_1:84459869-84459888 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_1:84459966-84459985 | None:intergenic | 25.0% |
| !! | ACATTTTTATCAATCACATG+AGG | - | chr3_1:84460141-84460160 | Msa0382010:CDS | 25.0% |
| ! | TTGTAAATCGTTATATCGAA+TGG | - | chr3_1:84460227-84460246 | Msa0382010:CDS | 25.0% |
| ! | TGTAAATCGTTATATCGAAT+GGG | - | chr3_1:84460228-84460247 | Msa0382010:CDS | 25.0% |
| !!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_1:84460369-84460388 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | + | chr3_1:84460402-84460421 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | + | chr3_1:84460403-84460422 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | + | chr3_1:84460669-84460688 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | - | chr3_1:84460739-84460758 | Msa0382010:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_1:84460999-84461018 | Msa0382010:CDS | 25.0% |
| ! | TAGATGATACAAGAAAGAAT+GGG | + | chr3_1:84459869-84459888 | None:intergenic | 25.0% |
| ! | TTCTTGATAAAGGATGTTAT+TGG | + | chr3_1:84459966-84459985 | None:intergenic | 25.0% |
| !! | ACATTTTTATCAATCACATG+AGG | - | chr3_1:84460141-84460160 | Msa0382010:CDS | 25.0% |
| ! | TTGTAAATCGTTATATCGAA+TGG | - | chr3_1:84460227-84460246 | Msa0382010:CDS | 25.0% |
| ! | TGTAAATCGTTATATCGAAT+GGG | - | chr3_1:84460228-84460247 | Msa0382010:CDS | 25.0% |
| !!! | GGTGTTAGTTTTATAAAGAA+AGG | + | chr3_1:84460369-84460388 | None:intergenic | 25.0% |
| ! | CAGAACATGTTATATAATGT+GGG | + | chr3_1:84460402-84460421 | None:intergenic | 25.0% |
| ! | TCAGAACATGTTATATAATG+TGG | + | chr3_1:84460403-84460422 | None:intergenic | 25.0% |
| ! | ACAAACATACATAATGTGAT+AGG | + | chr3_1:84460669-84460688 | None:intergenic | 25.0% |
| ! | AGAAAAACAACAACATGAAA+AGG | - | chr3_1:84460739-84460758 | Msa0382010:CDS | 25.0% |
| ! | TTGATAGAATGGAAAAAGAA+AGG | - | chr3_1:84460999-84461018 | Msa0382010:CDS | 25.0% |
| ! | AAACAGTACATTTGCGTTTT+TGG | + | chr3_1:84459839-84459858 | None:intergenic | 30.0% |
| CTAGATGATACAAGAAAGAA+TGG | + | chr3_1:84459870-84459889 | None:intergenic | 30.0% | |
| TTATTGGCCATTTCATTGTA+AGG | + | chr3_1:84459950-84459969 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_1:84459976-84459995 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_1:84460063-84460082 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_1:84460064-84460083 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_1:84460072-84460091 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | + | chr3_1:84460171-84460190 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | - | chr3_1:84460195-84460214 | Msa0382010:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | - | chr3_1:84460196-84460215 | Msa0382010:CDS | 30.0% | |
| TATAATGTGGGTGTATATGT+TGG | + | chr3_1:84460390-84460409 | None:intergenic | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | + | chr3_1:84460441-84460460 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | + | chr3_1:84460442-84460461 | None:intergenic | 30.0% | |
| GCAATTAGTATAGGAGATAT+AGG | - | chr3_1:84460544-84460563 | Msa0382010:intron | 30.0% | |
| !! | AATATTTATCACGGGTTGAT+AGG | + | chr3_1:84460585-84460604 | None:intergenic | 30.0% |
| CACATTATGTATGTTTGTGT+TGG | - | chr3_1:84460671-84460690 | Msa0382010:intron | 30.0% | |
| !! | ATGTTTGTGTTGGCATTTTT+AGG | - | chr3_1:84460681-84460700 | Msa0382010:intron | 30.0% |
| TAAAAGATTGACCAAAACTG+TGG | - | chr3_1:84460934-84460953 | Msa0382010:CDS | 30.0% | |
| ! | AAACAGTACATTTGCGTTTT+TGG | + | chr3_1:84459839-84459858 | None:intergenic | 30.0% |
| CTAGATGATACAAGAAAGAA+TGG | + | chr3_1:84459870-84459889 | None:intergenic | 30.0% | |
| TTATTGGCCATTTCATTGTA+AGG | + | chr3_1:84459950-84459969 | None:intergenic | 30.0% | |
| TGAGTTTCTGTTCTTGATAA+AGG | + | chr3_1:84459976-84459995 | None:intergenic | 30.0% | |
| ! | AATGATAGTGTTGGAGAATA+GGG | + | chr3_1:84460063-84460082 | None:intergenic | 30.0% |
| ! | TAATGATAGTGTTGGAGAAT+AGG | + | chr3_1:84460064-84460083 | None:intergenic | 30.0% |
| ! | ATTGTGAGTAATGATAGTGT+TGG | + | chr3_1:84460072-84460091 | None:intergenic | 30.0% |
| GTGATGGTTGAAATTTATGT+TGG | + | chr3_1:84460171-84460190 | None:intergenic | 30.0% | |
| ACAACAACAAACACATTCTT+TGG | - | chr3_1:84460195-84460214 | Msa0382010:CDS | 30.0% | |
| CAACAACAAACACATTCTTT+GGG | - | chr3_1:84460196-84460215 | Msa0382010:CDS | 30.0% | |
| TATAATGTGGGTGTATATGT+TGG | + | chr3_1:84460390-84460409 | None:intergenic | 30.0% | |
| CAGATTTGTACATTTATTCC+GGG | + | chr3_1:84460441-84460460 | None:intergenic | 30.0% | |
| CCAGATTTGTACATTTATTC+CGG | + | chr3_1:84460442-84460461 | None:intergenic | 30.0% | |
| GCAATTAGTATAGGAGATAT+AGG | - | chr3_1:84460544-84460563 | Msa0382010:intron | 30.0% | |
| !! | AATATTTATCACGGGTTGAT+AGG | + | chr3_1:84460585-84460604 | None:intergenic | 30.0% |
| CACATTATGTATGTTTGTGT+TGG | - | chr3_1:84460671-84460690 | Msa0382010:intron | 30.0% | |
| !! | ATGTTTGTGTTGGCATTTTT+AGG | - | chr3_1:84460681-84460700 | Msa0382010:intron | 30.0% |
| TAAAAGATTGACCAAAACTG+TGG | - | chr3_1:84460934-84460953 | Msa0382010:CDS | 30.0% | |
| !! | AAGAACCAAGTGGACTAAAA+GGG | + | chr3_1:84459808-84459827 | None:intergenic | 35.0% |
| !! | AAAGAACCAAGTGGACTAAA+AGG | + | chr3_1:84459809-84459828 | None:intergenic | 35.0% |
| ACACTTAAGATTCAATGCTC+TGG | + | chr3_1:84459917-84459936 | None:intergenic | 35.0% | |
| GATGCATCCTTACAATGAAA+TGG | - | chr3_1:84459940-84459959 | Msa0382010:CDS | 35.0% | |
| ACACACAACAACAGAAAGAA+CGG | - | chr3_1:84460101-84460120 | Msa0382010:CDS | 35.0% | |
| !! | GTTTGTTGTTGTTGTTGTGA+TGG | + | chr3_1:84460187-84460206 | None:intergenic | 35.0% |
| AATCGTTATATCGAATGGGA+AGG | - | chr3_1:84460232-84460251 | Msa0382010:CDS | 35.0% | |
| CCAAAAAGATACTCTAGCAT+TGG | + | chr3_1:84460260-84460279 | None:intergenic | 35.0% | |
| !! | CCAATGCTAGAGTATCTTTT+TGG | - | chr3_1:84460257-84460276 | Msa0382010:intron | 35.0% |
| CCGGAATAAATGTACAAATC+TGG | - | chr3_1:84460439-84460458 | Msa0382010:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | - | chr3_1:84460494-84460513 | Msa0382010:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | + | chr3_1:84460502-84460521 | None:intergenic | 35.0% | |
| ACAAGACCAATACATCAAGA+TGG | + | chr3_1:84460503-84460522 | None:intergenic | 35.0% | |
| TTCGCTTTCGCAATTAGTAT+AGG | - | chr3_1:84460535-84460554 | Msa0382010:intron | 35.0% | |
| !! | TAGGAAAGCATTCAACAACA+CGG | - | chr3_1:84460700-84460719 | Msa0382010:CDS | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | - | chr3_1:84460883-84460902 | Msa0382010:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_1:84460948-84460967 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_1:84460967-84460986 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_1:84460970-84460989 | Msa0382010:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_1:84460973-84460992 | Msa0382010:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | - | chr3_1:84461008-84461027 | Msa0382010:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | - | chr3_1:84461009-84461028 | Msa0382010:CDS | 35.0% | |
| ! | TCCAGCATTGAGAAAATAAC+TGG | - | chr3_1:84461133-84461152 | Msa0382010:five_prime_UTR | 35.0% |
| !! | ACCAGTTATTTTCTCAATGC+TGG | + | chr3_1:84461137-84461156 | None:intergenic | 35.0% |
| !!! | TGGTCGAAGATTTTCTAGTT+TGG | - | chr3_1:84461153-84461172 | Msa0382010:five_prime_UTR | 35.0% |
| !!! | GGTCGAAGATTTTCTAGTTT+GGG | - | chr3_1:84461154-84461173 | Msa0382010:five_prime_UTR | 35.0% |
| !! | AAGAACCAAGTGGACTAAAA+GGG | + | chr3_1:84459808-84459827 | None:intergenic | 35.0% |
| !! | AAAGAACCAAGTGGACTAAA+AGG | + | chr3_1:84459809-84459828 | None:intergenic | 35.0% |
| ACACTTAAGATTCAATGCTC+TGG | + | chr3_1:84459917-84459936 | None:intergenic | 35.0% | |
| GATGCATCCTTACAATGAAA+TGG | - | chr3_1:84459940-84459959 | Msa0382010:CDS | 35.0% | |
| ACACACAACAACAGAAAGAA+CGG | - | chr3_1:84460101-84460120 | Msa0382010:CDS | 35.0% | |
| !! | GTTTGTTGTTGTTGTTGTGA+TGG | + | chr3_1:84460187-84460206 | None:intergenic | 35.0% |
| AATCGTTATATCGAATGGGA+AGG | - | chr3_1:84460232-84460251 | Msa0382010:CDS | 35.0% | |
| CCAAAAAGATACTCTAGCAT+TGG | + | chr3_1:84460260-84460279 | None:intergenic | 35.0% | |
| !! | CCAATGCTAGAGTATCTTTT+TGG | - | chr3_1:84460257-84460276 | Msa0382010:intron | 35.0% |
| CCGGAATAAATGTACAAATC+TGG | - | chr3_1:84460439-84460458 | Msa0382010:intron | 35.0% | |
| TACTACCCATCTTGATGTAT+TGG | - | chr3_1:84460494-84460513 | Msa0382010:intron | 35.0% | |
| CAAGACCAATACATCAAGAT+GGG | + | chr3_1:84460502-84460521 | None:intergenic | 35.0% | |
| ACAAGACCAATACATCAAGA+TGG | + | chr3_1:84460503-84460522 | None:intergenic | 35.0% | |
| TTCGCTTTCGCAATTAGTAT+AGG | - | chr3_1:84460535-84460554 | Msa0382010:intron | 35.0% | |
| !! | TAGGAAAGCATTCAACAACA+CGG | - | chr3_1:84460700-84460719 | Msa0382010:CDS | 35.0% |
| GATGCGAAAGAAGAGATTTA+AGG | - | chr3_1:84460883-84460902 | Msa0382010:CDS | 35.0% | |
| !! | TTGGTGATTAACCACAGTTT+TGG | + | chr3_1:84460948-84460967 | None:intergenic | 35.0% |
| ! | ATTTCTTCTGAAGAACCTCT+TGG | + | chr3_1:84460967-84460986 | None:intergenic | 35.0% |
| GGTTCTTCAGAAGAAATTGT+TGG | - | chr3_1:84460970-84460989 | Msa0382010:CDS | 35.0% | |
| TCTTCAGAAGAAATTGTTGG+AGG | - | chr3_1:84460973-84460992 | Msa0382010:CDS | 35.0% | |
| TGGAAAAAGAAAGGATACAG+AGG | - | chr3_1:84461008-84461027 | Msa0382010:CDS | 35.0% | |
| GGAAAAAGAAAGGATACAGA+GGG | - | chr3_1:84461009-84461028 | Msa0382010:CDS | 35.0% | |
| ! | TCCAGCATTGAGAAAATAAC+TGG | - | chr3_1:84461133-84461152 | Msa0382010:five_prime_UTR | 35.0% |
| !! | ACCAGTTATTTTCTCAATGC+TGG | + | chr3_1:84461137-84461156 | None:intergenic | 35.0% |
| !!! | TGGTCGAAGATTTTCTAGTT+TGG | - | chr3_1:84461153-84461172 | Msa0382010:five_prime_UTR | 35.0% |
| !!! | GGTCGAAGATTTTCTAGTTT+GGG | - | chr3_1:84461154-84461173 | Msa0382010:five_prime_UTR | 35.0% |
| GAGAATGGAACCATCATCTA+GGG | + | chr3_1:84459999-84460018 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | + | chr3_1:84460000-84460019 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_1:84460014-84460033 | None:intergenic | 40.0% | |
| ! | TTGGGGTTAAGGTATTTGGA+GGG | + | chr3_1:84460027-84460046 | None:intergenic | 40.0% |
| ! | TTTGGGGTTAAGGTATTTGG+AGG | + | chr3_1:84460028-84460047 | None:intergenic | 40.0% |
| ! | TGGTTTGGGGTTAAGGTATT+TGG | + | chr3_1:84460031-84460050 | None:intergenic | 40.0% |
| ! | ATGAATGTGGTTTGGGGTTA+AGG | + | chr3_1:84460038-84460057 | None:intergenic | 40.0% |
| TAGGGTGATGAATGTGGTTT+GGG | + | chr3_1:84460045-84460064 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | + | chr3_1:84460046-84460065 | None:intergenic | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | + | chr3_1:84460429-84460448 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_1:84460450-84460469 | Msa0382010:intron | 40.0% |
| GGAAAACAACGAGAGATGTT+TGG | - | chr3_1:84460760-84460779 | Msa0382010:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | - | chr3_1:84460779-84460798 | Msa0382010:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_1:84460789-84460808 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | - | chr3_1:84460806-84460825 | Msa0382010:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | - | chr3_1:84460849-84460868 | Msa0382010:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | - | chr3_1:84460850-84460869 | Msa0382010:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | - | chr3_1:84460949-84460968 | Msa0382010:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | - | chr3_1:84460988-84461007 | Msa0382010:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | - | chr3_1:84461020-84461039 | Msa0382010:exon | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | - | chr3_1:84461023-84461042 | Msa0382010:exon | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_1:84461092-84461111 | Msa0382010:five_prime_UTR | 40.0% |
| GAGAATGGAACCATCATCTA+GGG | + | chr3_1:84459999-84460018 | None:intergenic | 40.0% | |
| TGAGAATGGAACCATCATCT+AGG | + | chr3_1:84460000-84460019 | None:intergenic | 40.0% | |
| ATTTGGAGGGTTGTTGAGAA+TGG | + | chr3_1:84460014-84460033 | None:intergenic | 40.0% | |
| ! | TTGGGGTTAAGGTATTTGGA+GGG | + | chr3_1:84460027-84460046 | None:intergenic | 40.0% |
| ! | TTTGGGGTTAAGGTATTTGG+AGG | + | chr3_1:84460028-84460047 | None:intergenic | 40.0% |
| ! | TGGTTTGGGGTTAAGGTATT+TGG | + | chr3_1:84460031-84460050 | None:intergenic | 40.0% |
| ! | ATGAATGTGGTTTGGGGTTA+AGG | + | chr3_1:84460038-84460057 | None:intergenic | 40.0% |
| TAGGGTGATGAATGTGGTTT+GGG | + | chr3_1:84460045-84460064 | None:intergenic | 40.0% | |
| ATAGGGTGATGAATGTGGTT+TGG | + | chr3_1:84460046-84460065 | None:intergenic | 40.0% | |
| TTTATTCCGGGCTCATTGTA+CGG | + | chr3_1:84460429-84460448 | None:intergenic | 40.0% | |
| ! | GTACAAATCTGGTTAGCTCA+TGG | - | chr3_1:84460450-84460469 | Msa0382010:intron | 40.0% |
| GGAAAACAACGAGAGATGTT+TGG | - | chr3_1:84460760-84460779 | Msa0382010:CDS | 40.0% | |
| TTGGTTTCCGACAACAACTT+TGG | - | chr3_1:84460779-84460798 | Msa0382010:CDS | 40.0% | |
| AAGCTCACCAAAGTTGTTGT+CGG | + | chr3_1:84460789-84460808 | None:intergenic | 40.0% | |
| CTTGAAGCTGTGTACAAACT+TGG | - | chr3_1:84460806-84460825 | Msa0382010:CDS | 40.0% | |
| AGGAACATGATTCGAAGAGA+AGG | - | chr3_1:84460849-84460868 | Msa0382010:CDS | 40.0% | |
| GGAACATGATTCGAAGAGAA+GGG | - | chr3_1:84460850-84460869 | Msa0382010:CDS | 40.0% | |
| AACTGTGGTTAATCACCAAG+AGG | - | chr3_1:84460949-84460968 | Msa0382010:CDS | 40.0% | |
| GTTGGAGGTGATTGATAGAA+TGG | - | chr3_1:84460988-84461007 | Msa0382010:CDS | 40.0% | |
| GGATACAGAGGGAAGAAAAT+TGG | - | chr3_1:84461020-84461039 | Msa0382010:exon | 40.0% | |
| TACAGAGGGAAGAAAATTGG+AGG | - | chr3_1:84461023-84461042 | Msa0382010:exon | 40.0% | |
| ! | GTGAGCGTGATTTTGCTAAA+CGG | - | chr3_1:84461092-84461111 | Msa0382010:five_prime_UTR | 40.0% |
| TGGACTAAAAGGGTTGGGTT+GGG | + | chr3_1:84459798-84459817 | None:intergenic | 45.0% | |
| !! | CCAAGTGGACTAAAAGGGTT+GGG | + | chr3_1:84459803-84459822 | None:intergenic | 45.0% |
| !! | ACCAAGTGGACTAAAAGGGT+TGG | + | chr3_1:84459804-84459823 | None:intergenic | 45.0% |
| GGAAGACTGAAAGAACCAAG+TGG | + | chr3_1:84459818-84459837 | None:intergenic | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | - | chr3_1:84459986-84460005 | Msa0382010:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | + | chr3_1:84460044-84460063 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | + | chr3_1:84460051-84460070 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | - | chr3_1:84460420-84460439 | Msa0382010:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | - | chr3_1:84460829-84460848 | Msa0382010:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_1:84460855-84460874 | Msa0382010:CDS | 45.0% | |
| TGGACTAAAAGGGTTGGGTT+GGG | + | chr3_1:84459798-84459817 | None:intergenic | 45.0% | |
| !! | CCAAGTGGACTAAAAGGGTT+GGG | + | chr3_1:84459803-84459822 | None:intergenic | 45.0% |
| !! | ACCAAGTGGACTAAAAGGGT+TGG | + | chr3_1:84459804-84459823 | None:intergenic | 45.0% |
| GGAAGACTGAAAGAACCAAG+TGG | + | chr3_1:84459818-84459837 | None:intergenic | 45.0% | |
| CAGAAACTCACCCTAGATGA+TGG | - | chr3_1:84459986-84460005 | Msa0382010:CDS | 45.0% | |
| AGGGTGATGAATGTGGTTTG+GGG | + | chr3_1:84460044-84460063 | None:intergenic | 45.0% | |
| GGAGAATAGGGTGATGAATG+TGG | + | chr3_1:84460051-84460070 | None:intergenic | 45.0% | |
| TGATAACCGTACAATGAGCC+CGG | - | chr3_1:84460420-84460439 | Msa0382010:intron | 45.0% | |
| TCAGAATCAAGCGTTCACTG+AGG | - | chr3_1:84460829-84460848 | Msa0382010:CDS | 45.0% | |
| ATGATTCGAAGAGAAGGGCT+AGG | - | chr3_1:84460855-84460874 | Msa0382010:CDS | 45.0% | |
| ! | GTGGACTAAAAGGGTTGGGT+TGG | + | chr3_1:84459799-84459818 | None:intergenic | 50.0% |
| ! | CCCAACCCTTTTAGTCCACT+TGG | - | chr3_1:84459800-84459819 | Msa0382010:CDS | 50.0% |
| ! | GTGGACTAAAAGGGTTGGGT+TGG | + | chr3_1:84459799-84459818 | None:intergenic | 50.0% |
| ! | CCCAACCCTTTTAGTCCACT+TGG | - | chr3_1:84459800-84459819 | Msa0382010:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84459794 | 84461183 | 84459794 | ID=Msa0382010;Name=Msa0382010 |
| chr3_1 | mRNA | 84459794 | 84461183 | 84459794 | ID=Msa0382010-mRNA-1;Parent=Msa0382010;Name=Msa0382010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|0.5|1|1|1|2|0|272 |
| chr3_1 | exon | 84459794 | 84460274 | 84459794 | ID=Msa0382010-mRNA-1:exon:21927;Parent=Msa0382010-mRNA-1 |
| chr3_1 | exon | 84460699 | 84461183 | 84460699 | ID=Msa0382010-mRNA-1:exon:21926;Parent=Msa0382010-mRNA-1 |
| chr3_1 | five_prime_UTR | 84461037 | 84461183 | 84461037 | ID=Msa0382010-mRNA-1:five_prime_utr;Parent=Msa0382010-mRNA-1 |
| chr3_1 | CDS | 84460699 | 84461036 | 84460699 | ID=Msa0382010-mRNA-1:cds;Parent=Msa0382010-mRNA-1 |
| chr3_1 | CDS | 84459794 | 84460274 | 84459794 | ID=Msa0382010-mRNA-1:cds;Parent=Msa0382010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
