AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1187160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187160 MtrunA17_Chr8g0354121 97.500 400 5 1 1 400 1 395 0.0 805
Msa1187160 MtrunA17_Chr3g0081511 69.430 386 106 4 1 377 1 383 0.0 542
Msa1187160 MtrunA17_Chr3g0081421 67.358 386 117 3 1 377 1 386 0.0 536
Msa1187160 MtrunA17_Chr7g0255561 68.468 333 102 3 6 337 7 337 4.01e-167 473
Msa1187160 MtrunA17_Chr7g0255581 68.468 333 102 3 6 337 7 337 4.01e-167 473
Msa1187160 MtrunA17_Chr1g0160171 48.459 357 175 3 6 358 9 360 2.57e-116 344
Msa1187160 MtrunA17_Chr3g0114691 45.195 385 194 5 3 375 10 389 5.80e-114 338
Msa1187160 MtrunA17_Chr7g0263101 46.316 380 191 5 1 378 1 369 2.34e-111 331
Msa1187160 MtrunA17_Chr1g0182291 48.955 335 163 3 3 336 5 332 2.58e-111 330
Msa1187160 MtrunA17_Chr3g0114731 42.455 391 204 6 9 399 14 383 2.93e-105 316
Msa1187160 MtrunA17_Chr1g0160181 42.204 372 196 5 9 364 14 382 1.14e-99 301
Msa1187160 MtrunA17_Chr3g0114711 39.846 389 192 6 3 353 1 385 2.84e-99 301
Msa1187160 MtrunA17_Chr3g0114701 45.773 343 181 5 10 350 6 345 1.40e-93 286
Msa1187160 MtrunA17_Chr1g0186611 38.810 353 202 4 9 360 12 351 2.87e-82 256
Msa1187160 MtrunA17_Chr1g0186601 39.583 336 192 4 9 343 12 337 2.27e-81 253
Msa1187160 MtrunA17_Chr1g0171301 39.286 336 195 4 9 343 12 339 3.73e-81 253
Msa1187160 MtrunA17_Chr8g0334761 39.823 339 193 6 11 343 5 338 4.51e-80 250
Msa1187160 MtrunA17_Chr1g0186641 38.329 347 203 5 3 345 1 340 4.85e-80 249
Msa1187160 MtrunA17_Chr3g0142131 38.872 337 196 2 10 337 17 352 5.95e-80 251
Msa1187160 MtrunA17_Chr2g0278561 37.203 379 213 6 7 366 9 381 3.19e-79 249
Msa1187160 MtrunA17_Chr2g0278541 35.492 386 227 9 7 375 6 386 1.69e-78 247
Msa1187160 MtrunA17_Chr1g0186571 37.119 361 213 5 3 360 1 350 1.39e-77 244
Msa1187160 MtrunA17_Chr7g0271561 39.394 330 196 2 18 344 12 340 5.08e-77 243
Msa1187160 MtrunA17_Chr6g0463971 35.905 337 209 4 10 344 13 344 1.66e-76 241
Msa1187160 MtrunA17_Chr6g0483401 39.241 316 191 1 22 337 19 333 1.52e-75 239
Msa1187160 MtrunA17_Chr1g0186561 39.766 342 184 8 9 343 12 338 1.79e-75 238
Msa1187160 MtrunA17_Chr1g0155761 37.101 345 196 3 10 337 18 358 1.83e-75 239
Msa1187160 MtrunA17_Chr2g0290611 38.110 328 198 4 10 336 9 332 4.16e-75 238
Msa1187160 MtrunA17_Chr2g0278551 35.620 379 234 4 18 396 17 385 6.69e-75 238
Msa1187160 MtrunA17_Chr3g0129601 36.364 341 205 4 10 345 26 359 1.03e-74 236
Msa1187160 MtrunA17_Chr4g0050881 37.572 346 204 8 10 351 6 343 3.51e-73 232
Msa1187160 MtrunA17_Chr4g0050941 36.939 379 227 8 7 379 6 378 1.86e-71 229
Msa1187160 MtrunA17_Chr2g0284261 35.329 334 209 2 7 340 2 328 3.02e-71 228
Msa1187160 MtrunA17_Chr3g0129571 35.860 343 206 6 15 351 9 343 3.37e-70 225
Msa1187160 MtrunA17_Chr4g0051021 36.522 345 212 4 8 351 9 347 6.38e-70 224
Msa1187160 MtrunA17_Chr2g0332001 33.780 373 222 7 10 369 35 395 8.19e-68 220
Msa1187160 MtrunA17_Chr8g0334751 36.769 359 217 6 11 365 6 358 1.11e-66 216
Msa1187160 MtrunA17_Chr4g0050891 34.954 329 208 4 6 331 6 331 1.36e-66 216
Msa1187160 MtrunA17_Chr2g0310441 35.588 340 200 6 11 341 5 334 2.96e-66 215
Msa1187160 MtrunA17_Chr1g0164831 34.627 335 207 5 13 344 3 328 1.80e-64 209
Msa1187160 MtrunA17_Chr3g0129591 35.905 337 207 6 15 347 7 338 2.11e-64 210
Msa1187160 MtrunA17_Chr1g0160111 32.370 346 224 3 22 358 16 360 2.21e-64 210
Msa1187160 MtrunA17_Chr8g0334771 36.657 341 201 6 11 343 5 338 8.88e-64 209
Msa1187160 MtrunA17_Chr1g0184221 30.398 352 222 3 9 346 12 354 2.84e-63 207
Msa1187160 MtrunA17_Chr4g0059311 33.036 336 215 5 15 346 13 342 6.24e-62 203
Msa1187160 MtrunA17_Chr8g0383731 33.929 336 213 4 15 345 7 338 6.16e-61 200
Msa1187160 MtrunA17_Chr1g0177221 39.764 254 144 4 13 264 18 264 9.30e-60 195
Msa1187160 MtrunA17_Chr5g0413921 34.783 322 201 5 18 337 12 326 6.93e-59 195
Msa1187160 MtrunA17_Chr1g0150151 31.143 350 233 5 3 348 1 346 1.27e-58 195
Msa1187160 MtrunA17_Chr5g0413941 33.333 336 203 6 10 337 4 326 2.08e-58 194
Msa1187160 MtrunA17_Chr3g0129581 37.092 337 203 5 15 347 7 338 2.43e-58 194
Msa1187160 MtrunA17_Chr4g0073241 33.636 330 202 5 18 341 13 331 2.04e-57 192
Msa1187160 MtrunA17_Chr3g0126101 33.538 325 205 5 20 344 16 329 1.09e-54 184
Msa1187160 MtrunA17_Chr5g0413961 30.882 340 225 4 7 345 8 338 1.82e-54 184
Msa1187160 MtrunA17_Chr7g0227921 33.333 339 212 9 9 343 7 335 4.65e-54 183
Msa1187160 MtrunA17_Chr5g0413951 31.515 330 205 6 16 337 10 326 1.58e-53 181
Msa1187160 MtrunA17_Chr4g0050931 31.672 341 188 4 4 340 3 302 7.03e-53 178
Msa1187160 MtrunA17_Chr4g0051001 33.548 310 200 4 7 314 25 330 2.68e-52 177
Msa1187160 MtrunA17_Chr5g0413931 32.424 330 212 6 18 344 11 332 3.95e-50 172
Msa1187160 MtrunA17_Chr5g0408001 31.467 375 231 7 10 370 7 369 1.25e-49 172
Msa1187160 MtrunA17_Chr5g0428881 26.166 386 274 4 3 379 1 384 2.98e-48 168
Msa1187160 MtrunA17_Chr5g0407971 30.994 342 217 6 10 337 8 344 4.34e-47 165
Msa1187160 MtrunA17_Chr5g0408031 31.085 341 220 3 10 337 7 345 3.02e-46 163
Msa1187160 MtrunA17_Chr5g0408041 31.858 339 216 3 12 337 10 346 4.04e-46 162
Msa1187160 MtrunA17_Chr5g0407991 31.858 339 212 5 13 337 9 342 8.44e-46 162
Msa1187160 MtrunA17_Chr5g0441761 29.595 321 214 4 17 336 18 327 1.05e-45 160
Msa1187160 MtrunA17_Chr6g0451211 31.562 320 206 6 33 348 32 342 5.07e-44 156
Msa1187160 MtrunA17_Chr6g0451261 31.013 316 211 5 3 317 1 310 8.06e-44 163
Msa1187160 MtrunA17_Chr6g0451171 29.762 336 216 7 22 347 21 346 7.19e-43 153
Msa1187160 MtrunA17_Chr6g0451201 30.721 319 205 5 33 348 32 337 2.37e-42 152
Msa1187160 MtrunA17_Chr3g0126091 25.225 333 241 3 15 344 13 340 2.99e-41 149
Msa1187160 MtrunA17_Chr8g0334711 40.722 194 109 4 18 210 15 203 1.35e-40 143
Msa1187160 MtrunA17_Chr1g0211801 32.061 262 172 4 3 264 1 256 7.76e-40 143
Msa1187160 MtrunA17_Chr8g0369841 28.024 339 225 5 13 337 9 342 2.45e-39 144
Msa1187160 MtrunA17_Chr5g0429001 26.846 298 204 3 63 347 1 297 2.24e-37 138
Msa1187160 MtrunA17_Chr6g0451251 29.787 329 216 6 18 342 17 334 5.43e-37 137
Msa1187160 MtrunA17_Chr2g0278021 34.420 276 159 7 127 395 1 261 1.11e-36 135
Msa1187160 MtrunA17_Chr3g0084091 26.756 299 197 5 93 378 10 299 7.76e-36 133
Msa1187160 MtrunA17_Chr4g0056081 28.612 353 220 10 1 337 2 338 2.30e-34 130
Msa1187160 MtrunA17_Chr5g0404811 31.169 231 152 4 121 350 1 225 4.59e-33 124
Msa1187160 MtrunA17_Chr5g0399281 29.204 339 213 9 10 336 5 328 4.76e-30 118
Msa1187160 MtrunA17_Chr6g0451191 28.384 229 148 3 127 347 1 221 3.24e-28 110
Msa1187160 MtrunA17_Chr1g0182261 41.096 146 75 5 211 346 83 227 3.37e-26 105
Msa1187160 MtrunA17_Chr1g0182261 41.558 77 45 0 9 85 10 86 4.31e-13 68.6
Msa1187160 MtrunA17_Chr5g0404801 43.590 117 66 0 10 126 4 120 4.33e-25 99.0
Msa1187160 MtrunA17_Chr2g0278031 42.982 114 65 0 10 123 11 124 9.35e-25 98.2
Msa1187160 MtrunA17_Chr8g0334731 34.466 206 105 8 11 210 6 187 1.81e-24 99.8
Msa1187160 MtrunA17_Chr8g0334721 40.517 116 69 0 231 346 4 119 3.46e-23 95.1
Msa1187160 MtrunA17_Chr1g0177231 51.250 80 39 0 265 344 29 108 8.63e-21 87.4
Msa1187160 MtrunA17_Chr1g0172881 32.192 146 77 5 124 264 21 149 1.30e-18 82.4
Msa1187160 MtrunA17_Chr1g0172891 50.725 69 34 0 269 337 11 79 6.36e-18 79.0
Msa1187160 MtrunA17_Chr4g0050911 32.812 128 79 2 93 214 11 137 1.22e-17 79.7
Msa1187160 MtrunA17_Chr8g0372571 68.182 44 14 0 244 287 2 45 4.60e-17 75.5
Msa1187160 MtrunA17_Chr4g0021721 68.182 44 14 0 244 287 2 45 6.24e-17 74.7
Msa1187160 MtrunA17_Chr1g0211811 39.241 79 48 0 266 344 1 79 2.44e-15 70.9
Msa1187160 MtrunA17_Chr6g0451241 44.928 69 38 0 280 348 23 91 2.55e-14 68.9
Msa1187160 MtrunA17_Chr4g0050921 34.375 96 61 1 219 314 8 101 5.89e-14 68.6
Msa1187160 MtrunA17_Chr1g0182251 60.465 43 17 0 72 114 1 43 4.94e-12 60.5
Msa1187160 MtrunA17_Chr1g0150651 33.333 84 54 1 127 210 1 82 4.52e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187160 AT5G07050.1 63.480 408 134 5 1 400 1 401 0.0 513
Msa1187160 AT2G40900.1 52.473 364 155 5 10 367 7 358 7.35e-138 399
Msa1187160 AT3G56620.1 55.077 325 137 3 10 334 7 322 3.21e-128 374
Msa1187160 AT1G21890.1 49.714 350 164 4 10 350 7 353 1.64e-116 345
Msa1187160 AT2G39510.1 45.153 392 191 9 8 396 2 372 2.54e-113 336
Msa1187160 AT2G37460.1 46.505 372 181 6 3 370 4 361 5.74e-112 333
Msa1187160 AT1G44800.1 46.567 335 174 2 5 339 2 331 4.43e-111 330
Msa1187160 AT4G08300.1 43.158 380 200 6 5 377 2 372 3.09e-107 320
Msa1187160 AT4G08290.1 45.015 331 179 2 6 336 5 332 1.12e-104 314
Msa1187160 AT1G21890.2 50.323 310 148 2 10 314 7 315 5.57e-104 311
Msa1187160 AT5G13670.1 45.455 330 176 4 9 337 3 329 2.91e-99 300
Msa1187160 AT2G37450.2 45.000 320 147 4 18 336 13 304 2.60e-84 261
Msa1187160 AT1G75500.1 38.095 378 211 6 10 368 16 389 9.60e-82 256
Msa1187160 AT1G75500.2 38.095 378 211 6 10 368 16 389 9.60e-82 256
Msa1187160 AT1G09380.1 38.298 329 192 4 10 333 4 326 9.83e-81 253
Msa1187160 AT3G18200.2 40.059 337 191 5 3 337 24 351 4.73e-76 241
Msa1187160 AT4G08290.2 41.473 258 148 2 6 263 5 259 2.92e-72 228
Msa1187160 AT4G30420.2 34.840 376 230 7 10 375 5 375 1.98e-71 229
Msa1187160 AT4G30420.1 34.959 369 225 7 17 375 2 365 8.06e-71 227
Msa1187160 AT3G30340.1 36.061 330 205 3 21 349 18 342 2.74e-70 225
Msa1187160 AT5G64700.1 34.985 343 215 3 10 347 4 343 1.67e-69 223
Msa1187160 AT3G53210.1 36.086 327 205 2 10 336 6 328 8.02e-68 219
Msa1187160 AT1G25270.1 35.583 326 207 3 12 337 1 323 1.03e-63 208
Msa1187160 AT1G43650.1 35.562 329 203 4 13 340 6 326 1.09e-61 202
Msa1187160 AT1G68170.2 35.224 335 214 3 3 336 1 333 1.26e-61 203
Msa1187160 AT1G68170.1 35.692 325 207 2 12 336 1 323 1.83e-61 202
Msa1187160 AT2G37450.3 44.770 239 124 3 99 336 1 232 1.19e-60 197
Msa1187160 AT4G28040.1 33.134 335 202 7 13 343 7 323 1.86e-60 200
Msa1187160 AT4G28040.5 33.134 335 202 7 13 343 7 323 1.86e-60 200
Msa1187160 AT4G28040.3 33.134 335 202 7 13 343 7 323 1.86e-60 200
Msa1187160 AT4G28040.4 33.134 335 202 7 13 343 7 323 1.86e-60 200
Msa1187160 AT4G28040.2 33.134 335 202 7 13 343 7 323 1.86e-60 200
Msa1187160 AT4G01440.1 34.277 318 199 4 29 342 25 336 2.22e-59 197
Msa1187160 AT4G01430.1 30.791 354 231 7 26 377 21 362 4.27e-54 183
Msa1187160 AT5G40210.1 35.241 332 187 7 16 345 15 320 6.80e-54 182
Msa1187160 AT1G01070.1 33.121 314 197 5 28 336 30 335 5.69e-52 178
Msa1187160 AT4G01440.3 33.449 287 184 3 29 314 25 305 7.63e-52 176
Msa1187160 AT1G11450.3 32.298 322 207 4 18 336 20 333 4.62e-51 175
Msa1187160 AT5G40240.1 30.746 335 226 5 10 342 16 346 3.89e-50 173
Msa1187160 AT5G40240.3 30.746 335 226 5 10 342 16 346 3.89e-50 173
Msa1187160 AT2G37450.1 44.340 212 110 3 126 336 61 265 5.04e-50 171
Msa1187160 AT2G37450.1 63.265 49 18 0 18 66 13 61 1.01e-12 68.9
Msa1187160 AT3G28050.1 30.435 322 214 4 16 336 14 326 5.38e-50 172
Msa1187160 AT5G40240.2 30.746 335 226 5 10 342 30 360 5.78e-50 173
Msa1187160 AT3G28100.1 31.915 329 213 6 16 340 16 337 6.85e-49 169
Msa1187160 AT1G11460.1 31.269 323 210 5 18 336 20 334 8.15e-49 169
Msa1187160 AT5G40230.1 31.437 334 225 4 10 342 17 347 1.05e-48 169
Msa1187160 AT3G53210.2 36.032 247 154 2 90 336 29 271 1.28e-47 165
Msa1187160 AT1G11450.5 33.219 292 184 4 48 336 6 289 1.54e-46 162
Msa1187160 AT3G53210.3 34.979 243 154 2 10 252 6 244 1.67e-46 160
Msa1187160 AT3G30340.2 34.351 262 163 4 18 278 15 268 7.52e-46 159
Msa1187160 AT1G70260.1 26.724 348 246 4 3 344 1 345 8.94e-46 162
Msa1187160 AT1G11450.2 32.872 289 183 4 51 336 2 282 8.95e-45 157
Msa1187160 AT3G18200.1 38.696 230 130 5 110 337 1 221 1.08e-44 155
Msa1187160 AT4G01430.2 31.597 288 192 3 29 314 24 308 1.42e-44 157
Msa1187160 AT4G15540.1 29.769 346 222 5 4 344 3 332 3.50e-44 157
Msa1187160 AT4G15540.2 29.769 346 222 5 4 344 3 332 3.50e-44 157
Msa1187160 AT5G64700.2 32.692 260 167 3 10 264 4 260 4.09e-44 154
Msa1187160 AT1G01070.2 31.399 293 195 4 45 336 1 288 5.20e-44 155
Msa1187160 AT5G45370.2 30.383 339 223 4 10 337 16 352 6.08e-44 157
Msa1187160 AT5G45370.4 30.383 339 223 4 10 337 16 352 6.08e-44 157
Msa1187160 AT5G45370.1 30.488 328 213 3 10 337 16 328 3.36e-43 154
Msa1187160 AT3G28130.2 30.864 324 215 7 16 336 15 332 5.14e-43 154
Msa1187160 AT3G28070.1 30.183 328 220 5 16 340 19 340 1.05e-42 153
Msa1187160 AT3G28070.2 32.653 245 162 2 96 340 7 248 2.09e-42 150
Msa1187160 AT3G45870.1 29.762 336 227 3 3 331 1 334 1.05e-41 151
Msa1187160 AT4G01440.4 33.755 237 150 3 29 264 25 255 1.59e-41 147
Msa1187160 AT1G11450.4 30.667 300 197 4 18 314 20 311 2.95e-41 148
Msa1187160 AT5G47470.1 30.114 352 207 10 5 339 21 350 5.53e-41 149
Msa1187160 AT5G47470.2 30.114 352 207 10 5 339 49 378 6.52e-41 149
Msa1187160 AT5G47470.3 30.114 352 207 10 5 339 49 378 6.69e-41 149
Msa1187160 AT3G28080.1 30.368 326 216 6 16 337 16 334 7.83e-41 148
Msa1187160 AT4G24980.1 29.032 310 149 6 28 337 1 239 1.41e-39 142
Msa1187160 AT4G01450.2 32.198 323 207 5 26 346 21 333 2.47e-39 144
Msa1187160 AT3G28130.5 33.333 243 155 5 96 336 9 246 3.06e-39 141
Msa1187160 AT3G28130.1 33.333 243 155 5 96 336 9 246 3.06e-39 141
Msa1187160 AT3G28080.5 32.365 241 158 3 98 337 9 245 3.86e-39 141
Msa1187160 AT3G28080.7 32.365 241 158 3 98 337 9 245 3.86e-39 141
Msa1187160 AT3G28080.8 32.365 241 158 3 98 337 9 245 3.86e-39 141
Msa1187160 AT3G28080.6 32.365 241 158 3 98 337 9 245 3.86e-39 141
Msa1187160 AT3G28080.2 31.154 260 169 4 98 351 90 345 4.04e-38 140
Msa1187160 AT4G19185.1 29.641 334 222 5 15 337 22 353 1.71e-36 137
Msa1187160 AT4G01440.5 32.328 232 147 4 115 342 3 228 5.40e-36 132
Msa1187160 AT4G01440.2 32.328 232 147 4 115 342 3 228 5.40e-36 132
Msa1187160 AT4G01450.1 31.271 291 188 5 26 314 21 301 1.46e-35 134
Msa1187160 AT3G45870.8 28.840 319 218 3 3 314 1 317 3.98e-35 132
Msa1187160 AT1G43650.2 31.349 252 165 3 13 264 6 249 5.23e-35 130
Msa1187160 AT1G11450.1 31.452 248 159 4 92 336 2 241 2.59e-34 128
Msa1187160 AT4G16620.1 29.480 346 198 7 22 344 20 342 2.06e-33 128
Msa1187160 AT4G01450.4 33.480 227 139 5 26 250 21 237 1.30e-32 124
Msa1187160 AT3G28070.3 28.808 302 206 5 16 314 19 314 2.04e-32 124
Msa1187160 AT4G01450.3 34.300 207 125 4 26 230 21 218 8.35e-31 118
Msa1187160 AT3G28070.5 31.308 214 144 2 127 340 1 211 2.46e-30 117
Msa1187160 AT3G28100.3 31.452 248 160 5 16 259 16 257 4.64e-30 117
Msa1187160 AT1G60050.1 25.073 343 247 6 9 343 8 348 7.17e-30 119
Msa1187160 AT3G45870.9 29.572 257 173 2 3 252 1 256 1.99e-29 115
Msa1187160 AT3G28130.3 32.547 212 136 5 127 336 1 207 3.60e-28 111
Msa1187160 AT3G28080.3 27.744 328 168 9 16 337 16 280 5.88e-28 112
Msa1187160 AT3G28080.9 31.132 212 141 3 127 337 1 208 7.02e-28 110
Msa1187160 AT4G01430.3 28.692 237 156 6 142 377 1 225 2.29e-27 108
Msa1187160 AT4G19185.2 27.907 258 173 5 91 337 20 275 1.09e-26 109
Msa1187160 AT5G45370.6 29.482 251 164 4 98 337 2 250 1.11e-26 108
Msa1187160 AT5G45370.5 29.482 251 164 4 98 337 2 250 1.11e-26 108
Msa1187160 AT3G28080.4 28.807 243 110 6 98 337 9 191 5.23e-26 104
Msa1187160 AT4G16620.4 30.224 268 142 6 99 344 1 245 8.60e-24 100
Msa1187160 AT4G16620.2 30.224 268 142 6 99 344 1 245 8.60e-24 100
Msa1187160 AT3G28130.4 28.226 248 170 6 16 260 15 257 2.70e-23 98.6
Msa1187160 AT3G28100.2 32.178 202 127 5 16 213 16 211 3.24e-23 98.2
Msa1187160 AT3G45870.5 28.511 235 158 4 105 331 27 259 6.55e-23 98.6
Msa1187160 AT4G16620.3 29.060 234 132 4 22 241 20 233 4.23e-21 92.8
Msa1187160 AT3G28130.6 29.612 206 138 5 16 219 15 215 5.08e-19 85.5
Msa1187160 AT5G45370.3 28.054 221 146 4 128 337 74 292 3.40e-18 85.1
Msa1187160 AT3G45870.6 27.064 218 149 4 105 314 27 242 8.17e-17 80.1
Msa1187160 AT3G45870.7 27.064 218 149 4 105 314 27 242 8.17e-17 80.1
Msa1187160 AT3G45870.2 27.273 165 118 2 167 331 21 183 1.54e-12 67.4
Msa1187160 AT3G45870.3 27.564 156 104 3 105 252 27 181 4.97e-11 62.4

Find 101 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTTGAGCACCCTTTAT+TGG 0.161865 8_1:-26616340 None:intergenic
ACTTCACTTGTGGTCTTTAT+TGG 0.168621 8_1:+26614938 Msa1187160:CDS
TAGGCTTATATTCTGTTCTA+TGG 0.243269 8_1:+26616269 Msa1187160:CDS
GCTATGATATGTTTACAATT+TGG 0.247586 8_1:+26613327 Msa1187160:CDS
TGATATTCCTTTGCCAATAA+AGG 0.262662 8_1:+26616327 Msa1187160:CDS
AAAATTCGGAAGGTTATCTT+AGG 0.284219 8_1:-26613565 None:intergenic
AAGAGAAATGGAATATGATT+AGG 0.298114 8_1:+26616510 Msa1187160:three_prime_UTR
GGTGCCATCTTGATTGTTAT+AGG 0.303386 8_1:+26616250 Msa1187160:CDS
GGGAGGAAAACTTGGTAAAA+AGG 0.304631 8_1:-26616576 None:intergenic
CCAACTAATCCATGTAGAAA+TGG 0.325945 8_1:+26616660 Msa1187160:three_prime_UTR
AAGGGACAAAATGGGGATAA+TGG 0.328075 8_1:-26616557 None:intergenic
TGAAAATTTGCAAGAAAATT+CGG 0.334786 8_1:-26613579 None:intergenic
CCATTTCTACATGGATTAGT+TGG 0.345012 8_1:-26616660 None:intergenic
ATGTACAAGGGCTGGTGATT+AGG 0.352651 8_1:+26615480 Msa1187160:CDS
TATTTGAGAAGAAACTAGAT+AGG 0.353240 8_1:-26613234 None:intergenic
TTATCATTGCCACCTTTGCT+TGG 0.363715 8_1:+26614712 Msa1187160:CDS
GAGATGCCAAGCAAAGATAT+TGG 0.370414 8_1:+26614530 Msa1187160:CDS
CAGGATCTTCTGAAAGAGAT+TGG 0.374788 8_1:+26614670 Msa1187160:CDS
GATATTCCTTTGCCAATAAA+GGG 0.379436 8_1:+26616328 Msa1187160:CDS
TATCATTGCCACCTTTGCTT+GGG 0.380505 8_1:+26614713 Msa1187160:CDS
ATGCTAATGACATTATATAA+AGG 0.391959 8_1:+26614579 Msa1187160:CDS
AATCTGTTCTGCAAGGATAA+AGG 0.397927 8_1:-26615570 None:intergenic
TGTTTACAATTTGGCTATGC+TGG 0.398259 8_1:+26613336 Msa1187160:CDS
TCATTGCACACGAGAAGGTT+GGG 0.399257 8_1:-26613938 None:intergenic
TTAGTAGTAGGTTCTCTAGT+AGG 0.409677 8_1:-26616460 None:intergenic
GATGATCATTGTTGCAATCA+TGG 0.415373 8_1:+26615544 Msa1187160:CDS
GATCAAAATTTCTATTATGC+TGG 0.415531 8_1:+26613900 Msa1187160:CDS
TGGTTAACATTATTAGTAGT+AGG 0.418885 8_1:-26616472 None:intergenic
AGGCTTATATTCTGTTCTAT+GGG 0.421194 8_1:+26616270 Msa1187160:CDS
CAACTAATCCATGTAGAAAT+GGG 0.428119 8_1:+26616661 Msa1187160:three_prime_UTR
CTTCTGTATGGAGGATTGGT+TGG 0.434265 8_1:+26615005 Msa1187160:CDS
CTCTCAAACATAAATGCAAA+TGG 0.436031 8_1:-26613453 None:intergenic
GTCCTATTGTGGAGATGGTA+TGG 0.436646 8_1:+26614601 Msa1187160:CDS
AGATGCCAAGCAAAGATATT+GGG 0.446672 8_1:+26614531 Msa1187160:CDS
TTCTGTATGGAGGATTGGTT+GGG 0.449804 8_1:+26615006 Msa1187160:CDS
GCCCATACCATCTCCACAAT+AGG 0.458933 8_1:-26614603 None:intergenic
GATCCTTCTGTATGGAGGAT+TGG 0.467856 8_1:+26615001 Msa1187160:CDS
CAAACAGTACAAGGGGTGAT+GGG 0.472174 8_1:-26616598 None:intergenic
CTCATTGCACACGAGAAGGT+TGG 0.475287 8_1:-26613939 None:intergenic
TTCGGAAGGTTATCTTAGGT+TGG 0.483417 8_1:-26613561 None:intergenic
AACTGAAGAAAGCATGTTGT+TGG 0.484273 8_1:-26616425 None:intergenic
CTGTTCCCAATATCTTTGCT+TGG 0.486385 8_1:-26614536 None:intergenic
GGACATAGTGGCTCATTCCT+TGG 0.492407 8_1:-26613389 None:intergenic
CTGAGCATGATCCTTCTGTA+TGG 0.494380 8_1:+26614993 Msa1187160:CDS
CTTGCAGAACAGATTTACTC+TGG 0.496224 8_1:+26615578 Msa1187160:CDS
GATCATCATAAGTGGGCTAA+AGG 0.497400 8_1:-26615528 None:intergenic
GGGAATTGTGACCTCAAGCT+TGG 0.497579 8_1:+26615451 Msa1187160:intron
CATTTGCATTTATGTTTGAG+AGG 0.499498 8_1:+26613454 Msa1187160:CDS
TTATGATTCCCATTTCTACA+TGG 0.499818 8_1:-26616669 None:intergenic
CTAAAGGCAGTTGCAAAGAC+AGG 0.501855 8_1:-26615512 None:intergenic
CTATGTGGGTGCAGTGTGAT+GGG 0.505357 8_1:+26616229 Msa1187160:intron
TGGTATGAACATTATCACTA+AGG 0.506134 8_1:+26613356 Msa1187160:CDS
TCAAACAGTACAAGGGGTGA+TGG 0.506594 8_1:-26616599 None:intergenic
GCCATCACAAAAGTCATGGC+TGG 0.507574 8_1:-26613972 None:intergenic
ACTATGTGGGTGCAGTGTGA+TGG 0.518714 8_1:+26616228 Msa1187160:intron
GCAACAATGATCATCATAAG+TGG 0.519358 8_1:-26615536 None:intergenic
TGAGCACCCTTTATTGGCAA+AGG 0.522528 8_1:-26616334 None:intergenic
AGCTTGGCATACTATGTACA+AGG 0.527654 8_1:+26615467 Msa1187160:CDS
TAGTGTAGTATAGAGAAAAG+AGG 0.528082 8_1:-26613192 None:intergenic
TAAAGGTCCTATTGTGGAGA+TGG 0.529191 8_1:+26614596 Msa1187160:CDS
GGAACAGTATTGACAGTAGC+TGG 0.536170 8_1:+26614552 Msa1187160:CDS
GAGGAAGAACACTTGCAAGA+AGG 0.542054 8_1:-26613173 None:intergenic
GGCATACTATGTACAAGGGC+TGG 0.542406 8_1:+26615472 Msa1187160:CDS
ATATTTGCTCAAACAGTACA+AGG 0.543704 8_1:-26616607 None:intergenic
AAACAGTACAAGGGGTGATG+GGG 0.548665 8_1:-26616597 None:intergenic
CATTGCACACGAGAAGGTTG+GGG 0.551542 8_1:-26613937 None:intergenic
GGGCTGGTGATTAGGAAGAA+AGG 0.554147 8_1:+26615488 Msa1187160:CDS
CAGAACAGATTTACTCTGGA+GGG 0.561325 8_1:+26615582 Msa1187160:CDS
ATCTCTTTCAGAAGATCCTG+TGG 0.563505 8_1:-26614667 None:intergenic
GATAAACGACGAGGACATAG+TGG 0.564461 8_1:-26613401 None:intergenic
ATGGAAGATCCTTACAGCAT+AGG 0.565176 8_1:-26615050 None:intergenic
ATGATCATTGTTGCAATCAT+GGG 0.565857 8_1:+26615545 Msa1187160:CDS
AGACTAACCCAAGAAGAGCT+AGG 0.568023 8_1:-26613603 None:intergenic
TCCTATTGTGGAGATGGTAT+GGG 0.568336 8_1:+26614602 Msa1187160:CDS
TAGAAGCAGTTGCAAAAGCA+TGG 0.568399 8_1:-26613425 None:intergenic
TAAGCCTATAACAATCAAGA+TGG 0.569495 8_1:-26616254 None:intergenic
GTAATGCTTCATGTTCTCAA+AGG 0.583502 8_1:-26613301 None:intergenic
GAGTGAAGCCCAAGCAAAGG+TGG 0.584171 8_1:-26614721 None:intergenic
AACTGCCATCACAAAAGTCA+TGG 0.584413 8_1:-26613976 None:intergenic
ATTATATAAAGGTCCTATTG+TGG 0.588030 8_1:+26614590 Msa1187160:CDS
ACTAAGTCTTACTTCACTTG+TGG 0.588891 8_1:+26614928 Msa1187160:CDS
CAACAATGATCATCATAAGT+GGG 0.593912 8_1:-26615535 None:intergenic
ACACATGAAACAACAACCAC+AGG 0.596729 8_1:+26614651 Msa1187160:CDS
CAGAGTAAATCTGTTCTGCA+AGG 0.604588 8_1:-26615577 None:intergenic
TGTTCTATGGGGAAAGCACA+AGG 0.606487 8_1:+26616282 Msa1187160:CDS
TACATAGTATGCCAAGCTTG+AGG 0.608423 8_1:-26615462 None:intergenic
AACAGTACAAGGGGTGATGG+GGG 0.609035 8_1:-26616596 None:intergenic
AAAGAGTGAAGCCCAAGCAA+AGG 0.613193 8_1:-26614724 None:intergenic
CAACCAATCCTCCATACAGA+AGG 0.613695 8_1:-26615004 None:intergenic
AATTTGCAAGAAAATTCGGA+AGG 0.622665 8_1:-26613575 None:intergenic
ATAAAGGGTGCTCAAATGAG+TGG 0.625024 8_1:+26616343 Msa1187160:CDS
AGCATGATCCTTCTGTATGG+AGG 0.629537 8_1:+26614996 Msa1187160:CDS
GTTGCTCATTGCACACGAGA+AGG 0.630812 8_1:-26613943 None:intergenic
GGCTTATATTCTGTTCTATG+GGG 0.631913 8_1:+26616271 Msa1187160:CDS
ATTTGCTCAAACAGTACAAG+GGG 0.635629 8_1:-26616605 None:intergenic
GCAGAACAGATTTACTCTGG+AGG 0.643564 8_1:+26615581 Msa1187160:CDS
ACTAAGGTTTCTCTCAACCA+AGG 0.665839 8_1:+26613372 Msa1187160:CDS
TATTTGCTCAAACAGTACAA+GGG 0.680212 8_1:-26616606 None:intergenic
GACACAGATCAAGTAAAACA+TGG 0.688084 8_1:+26616388 Msa1187160:CDS
GCTTGGCATACTATGTACAA+GGG 0.749546 8_1:+26615468 Msa1187160:CDS
AAGCATGGCGATAAACGACG+AGG 0.774328 8_1:-26613410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATATTAAAAAAA+TGG - chr8_1:26615689-26615708 None:intergenic 0.0%
!! ACTACTAAAAAAAATTAAAA+AGG + chr8_1:26614270-26614289 Msa1187160:intron 10.0%
!! ATAAAAAAATTAATGATGTT+AGG - chr8_1:26614374-26614393 None:intergenic 10.0%
!!! TTTTGTTTTTAAATATGAAA+AGG + chr8_1:26614481-26614500 Msa1187160:intron 10.0%
!! ATATTTGATCAATAAATTAC+AGG + chr8_1:26613868-26613887 Msa1187160:intron 15.0%
!!! CAAAATTCAGATTATTTTAA+GGG + chr8_1:26614015-26614034 Msa1187160:intron 15.0%
!! TAAGGGATTAATTAATTAAT+TGG - chr8_1:26614154-26614173 None:intergenic 15.0%
!! GTACATAGTATATAAAATAA+GGG - chr8_1:26614171-26614190 None:intergenic 15.0%
!! TGTACATAGTATATAAAATA+AGG - chr8_1:26614172-26614191 None:intergenic 15.0%
!!! TTTTTGTACAAATTATTGAT+TGG + chr8_1:26614868-26614887 Msa1187160:intron 15.0%
!!! TTTTGTACAAATTATTGATT+GGG + chr8_1:26614869-26614888 Msa1187160:intron 15.0%
!!! GATAAAAACATTTTTTTAGA+GGG - chr8_1:26615087-26615106 None:intergenic 15.0%
!!! AGATAAAAACATTTTTTTAG+AGG - chr8_1:26615088-26615107 None:intergenic 15.0%
!! TTCAAAAAATTGTCAAAAAA+TGG - chr8_1:26615281-26615300 None:intergenic 15.0%
!! TTAATATACACTTATTACTT+GGG - chr8_1:26615799-26615818 None:intergenic 15.0%
!! AAAAAAAAAATCTAGACATA+GGG - chr8_1:26615878-26615897 None:intergenic 15.0%
!!! ATAAAAAGTTTTAAGAGAAA+TGG + chr8_1:26616498-26616517 Msa1187160:exon 15.0%
!! AATCAATAACCAAAGAAAAA+TGG + chr8_1:26613260-26613279 Msa1187160:exon 20.0%
!! TCTTATTGTTTCATATTTGT+AGG + chr8_1:26613533-26613552 Msa1187160:intron 20.0%
!! TGAAAATTTGCAAGAAAATT+CGG - chr8_1:26613582-26613601 None:intergenic 20.0%
!! GAACTAAAAATTGTAAATAG+AGG - chr8_1:26613682-26613701 None:intergenic 20.0%
!!! AAACATGTAGTTTTTAGATT+TGG - chr8_1:26613707-26613726 None:intergenic 20.0%
!!! ATGTTTTTTTATCTTTGAAG+AGG + chr8_1:26613721-26613740 Msa1187160:intron 20.0%
!!! TGTTTTTTTATCTTTGAAGA+GGG + chr8_1:26613722-26613741 Msa1187160:intron 20.0%
!! GACTAAAAAGTTAATACATA+TGG + chr8_1:26613776-26613795 Msa1187160:intron 20.0%
!!! CCTTAAAATAATCTGAATTT+TGG - chr8_1:26614017-26614036 None:intergenic 20.0%
!!! CCAAAATTCAGATTATTTTA+AGG + chr8_1:26614014-26614033 Msa1187160:intron 20.0%
!! AGACAATATTATGTAGAAAA+TGG + chr8_1:26614052-26614071 Msa1187160:intron 20.0%
!! TGACATCTAAAAAAAACTTA+TGG - chr8_1:26614419-26614438 None:intergenic 20.0%
!!! GTTTTTAAATATGAAAAGGA+TGG + chr8_1:26614485-26614504 Msa1187160:intron 20.0%
!! ATGCTAATGACATTATATAA+AGG + chr8_1:26614579-26614598 Msa1187160:CDS 20.0%
!!! ATTCTTACTCTCTTTTATTT+TGG + chr8_1:26615324-26615343 Msa1187160:intron 20.0%
!! TTACTATTGTAATTCTTAGA+AGG + chr8_1:26615393-26615412 Msa1187160:intron 20.0%
!! CTTAATATACACTTATTACT+TGG - chr8_1:26615800-26615819 None:intergenic 20.0%
!! GAAAAAAAAAATCTAGACAT+AGG - chr8_1:26615879-26615898 None:intergenic 20.0%
!! TGACAAAATTTAATACAAGT+TGG - chr8_1:26616159-26616178 None:intergenic 20.0%
!!! AAATTTTGTCATCATTCAAA+TGG + chr8_1:26616168-26616187 Msa1187160:intron 20.0%
!!! CTAACTAAAGAATTTGATTT+TGG + chr8_1:26616205-26616224 Msa1187160:intron 20.0%
! TATTTGAGAAGAAACTAGAT+AGG - chr8_1:26613237-26613256 None:intergenic 25.0%
!!! AAAGGAATTTGATTTTTCCA+TGG - chr8_1:26613286-26613305 None:intergenic 25.0%
! GCTATGATATGTTTACAATT+TGG + chr8_1:26613327-26613346 Msa1187160:CDS 25.0%
! TTGTTTCATATTTGTAGGAA+AGG + chr8_1:26613538-26613557 Msa1187160:intron 25.0%
! TCTTATTCATGCTATATTTG+TGG - chr8_1:26613803-26613822 None:intergenic 25.0%
!!! TAGAAATTTTGATCAATCAC+TGG - chr8_1:26613894-26613913 None:intergenic 25.0%
! GATCAAAATTTCTATTATGC+TGG + chr8_1:26613900-26613919 Msa1187160:CDS 25.0%
! ATTATGTAGAAAATGGAAGA+AGG + chr8_1:26614059-26614078 Msa1187160:intron 25.0%
! CTTATCGTTAAATTTAGTGA+CGG - chr8_1:26614316-26614335 None:intergenic 25.0%
! ATTATATAAAGGTCCTATTG+TGG + chr8_1:26614590-26614609 Msa1187160:CDS 25.0%
!!! ATTTTGAGGATGTCTATTTT+TGG - chr8_1:26614628-26614647 None:intergenic 25.0%
!! TACAAATTATTGATTGGGTT+AGG + chr8_1:26614874-26614893 Msa1187160:intron 25.0%
!! ATTTTCTTGCCAATATATTG+AGG - chr8_1:26615739-26615758 None:intergenic 25.0%
!! TACTTGGGTTTTACTAAATT+TGG - chr8_1:26615784-26615803 None:intergenic 25.0%
!! TAACTTGTATTAATGCAACA+TGG - chr8_1:26615824-26615843 None:intergenic 25.0%
! ATTTAAATCAGAAAGCTAGT+AGG - chr8_1:26615918-26615937 None:intergenic 25.0%
! CACACTTAATACTTCTTTAT+AGG - chr8_1:26615948-26615967 None:intergenic 25.0%
!! GAAGTATTAAGTGTGTATTA+AGG + chr8_1:26615953-26615972 Msa1187160:intron 25.0%
!!! AATTTGATTTTGGACTATGT+GGG + chr8_1:26616215-26616234 Msa1187160:intron 25.0%
! TGGTTAACATTATTAGTAGT+AGG - chr8_1:26616475-26616494 None:intergenic 25.0%
!! CTCTTAAAACTTTTTATTGC+TGG - chr8_1:26616495-26616514 None:intergenic 25.0%
! AAGAGAAATGGAATATGATT+AGG + chr8_1:26616510-26616529 Msa1187160:three_prime_UTR 25.0%
TAGTGTAGTATAGAGAAAAG+AGG - chr8_1:26613195-26613214 None:intergenic 30.0%
TGGTATGAACATTATCACTA+AGG + chr8_1:26613356-26613375 Msa1187160:CDS 30.0%
CTCTCAAACATAAATGCAAA+TGG - chr8_1:26613456-26613475 None:intergenic 30.0%
CATTTGCATTTATGTTTGAG+AGG + chr8_1:26613454-26613473 Msa1187160:CDS 30.0%
AAAATTCGGAAGGTTATCTT+AGG - chr8_1:26613568-26613587 None:intergenic 30.0%
AATTTGCAAGAAAATTCGGA+AGG - chr8_1:26613578-26613597 None:intergenic 30.0%
!! ATTTTAAGGGTGTGAATGTT+AGG + chr8_1:26614028-26614047 Msa1187160:intron 30.0%
TAAAGGAAATATGAGAGGTT+AGG - chr8_1:26614216-26614235 None:intergenic 30.0%
!!! GGTTTTAAAGGAAATATGAG+AGG - chr8_1:26614221-26614240 None:intergenic 30.0%
! GTTTCATGTGTTTCATTTTG+AGG - chr8_1:26614642-26614661 None:intergenic 30.0%
! TCTGAAAGAGATTGGATTTT+AGG + chr8_1:26614678-26614697 Msa1187160:CDS 30.0%
! CTGAAAGAGATTGGATTTTA+GGG + chr8_1:26614679-26614698 Msa1187160:CDS 30.0%
TTAGAGGGAAGTTAAAATCA+TGG - chr8_1:26615072-26615091 None:intergenic 30.0%
ATGTCAATACCTATATTCGA+GGG + chr8_1:26615352-26615371 Msa1187160:intron 30.0%
! CTTTTAAATCCCTCGAATAT+AGG - chr8_1:26615364-26615383 None:intergenic 30.0%
CAACAATGATCATCATAAGT+GGG - chr8_1:26615538-26615557 None:intergenic 30.0%
ATGATCATTGTTGCAATCAT+GGG + chr8_1:26615545-26615564 Msa1187160:CDS 30.0%
! TATCTTCATCGATTATCACA+AGG + chr8_1:26616019-26616038 Msa1187160:intron 30.0%
!! GAATTTGATTTTGGACTATG+TGG + chr8_1:26616214-26616233 Msa1187160:intron 30.0%
TAAGCCTATAACAATCAAGA+TGG - chr8_1:26616257-26616276 None:intergenic 30.0%
TAGGCTTATATTCTGTTCTA+TGG + chr8_1:26616269-26616288 Msa1187160:CDS 30.0%
AGGCTTATATTCTGTTCTAT+GGG + chr8_1:26616270-26616289 Msa1187160:CDS 30.0%
TGATATTCCTTTGCCAATAA+AGG + chr8_1:26616327-26616346 Msa1187160:CDS 30.0%
GATATTCCTTTGCCAATAAA+GGG + chr8_1:26616328-26616347 Msa1187160:CDS 30.0%
TTGGTAAAAAGGGACAAAAT+GGG - chr8_1:26616568-26616587 None:intergenic 30.0%
TATTTGCTCAAACAGTACAA+GGG - chr8_1:26616609-26616628 None:intergenic 30.0%
ATATTTGCTCAAACAGTACA+AGG - chr8_1:26616610-26616629 None:intergenic 30.0%
CAACTAATCCATGTAGAAAT+GGG + chr8_1:26616661-26616680 Msa1187160:three_prime_UTR 30.0%
TTATGATTCCCATTTCTACA+TGG - chr8_1:26616672-26616691 None:intergenic 30.0%
TAACCAAAGAAAAATGGCCA+TGG + chr8_1:26613266-26613285 Msa1187160:exon 35.0%
!!! TTTCCATGGCCATTTTTCTT+TGG - chr8_1:26613272-26613291 None:intergenic 35.0%
GTAATGCTTCATGTTCTCAA+AGG - chr8_1:26613304-26613323 None:intergenic 35.0%
TGTTTACAATTTGGCTATGC+TGG + chr8_1:26613336-26613355 Msa1187160:CDS 35.0%
!! ATTTTCATCCTAGCTCTTCT+TGG + chr8_1:26613595-26613614 Msa1187160:CDS 35.0%
!! TTTTCATCCTAGCTCTTCTT+GGG + chr8_1:26613596-26613615 Msa1187160:CDS 35.0%
! CTTCTTGCTAGTTTAATTCG+CGG + chr8_1:26613626-26613645 Msa1187160:intron 35.0%
AGATGCCAAGCAAAGATATT+GGG + chr8_1:26614531-26614550 Msa1187160:CDS 35.0%
ACTAAGTCTTACTTCACTTG+TGG + chr8_1:26614928-26614947 Msa1187160:CDS 35.0%
ACTTCACTTGTGGTCTTTAT+TGG + chr8_1:26614938-26614957 Msa1187160:CDS 35.0%
!!! AGCTATTGCTGTTACTTTTG+TGG + chr8_1:26614970-26614989 Msa1187160:CDS 35.0%
CATGTCAATACCTATATTCG+AGG + chr8_1:26615351-26615370 Msa1187160:intron 35.0%
GCAACAATGATCATCATAAG+TGG - chr8_1:26615539-26615558 None:intergenic 35.0%
GATGATCATTGTTGCAATCA+TGG + chr8_1:26615544-26615563 Msa1187160:CDS 35.0%
AATCTGTTCTGCAAGGATAA+AGG - chr8_1:26615573-26615592 None:intergenic 35.0%
CTGCATCTTCCTCAATATAT+TGG + chr8_1:26615727-26615746 Msa1187160:intron 35.0%
GGCTTATATTCTGTTCTATG+GGG + chr8_1:26616271-26616290 Msa1187160:CDS 35.0%
GACACAGATCAAGTAAAACA+TGG + chr8_1:26616388-26616407 Msa1187160:CDS 35.0%
! AACTGAAGAAAGCATGTTGT+TGG - chr8_1:26616428-26616447 None:intergenic 35.0%
TTAGTAGTAGGTTCTCTAGT+AGG - chr8_1:26616463-26616482 None:intergenic 35.0%
TGGTAAAAAGGGACAAAATG+GGG - chr8_1:26616567-26616586 None:intergenic 35.0%
CTTGGTAAAAAGGGACAAAA+TGG - chr8_1:26616569-26616588 None:intergenic 35.0%
GGAGGAAAACTTGGTAAAAA+GGG - chr8_1:26616578-26616597 None:intergenic 35.0%
ATTTGCTCAAACAGTACAAG+GGG - chr8_1:26616608-26616627 None:intergenic 35.0%
!! CCATTTCTACATGGATTAGT+TGG - chr8_1:26616663-26616682 None:intergenic 35.0%
CCAACTAATCCATGTAGAAA+TGG + chr8_1:26616660-26616679 Msa1187160:three_prime_UTR 35.0%
ACTAAGGTTTCTCTCAACCA+AGG + chr8_1:26613372-26613391 Msa1187160:CDS 40.0%
TAGAAGCAGTTGCAAAAGCA+TGG - chr8_1:26613428-26613447 None:intergenic 40.0%
TTCGGAAGGTTATCTTAGGT+TGG - chr8_1:26613564-26613583 None:intergenic 40.0%
AACTGCCATCACAAAAGTCA+TGG - chr8_1:26613979-26613998 None:intergenic 40.0%
!! TTGTGATGGCAGTTTTATGC+AGG + chr8_1:26613985-26614004 Msa1187160:CDS 40.0%
! ATTTTCTTTCTCTAGCGACG+AGG - chr8_1:26614242-26614261 None:intergenic 40.0%
GAGATGCCAAGCAAAGATAT+TGG + chr8_1:26614530-26614549 Msa1187160:CDS 40.0%
CTGTTCCCAATATCTTTGCT+TGG - chr8_1:26614539-26614558 None:intergenic 40.0%
TAAAGGTCCTATTGTGGAGA+TGG + chr8_1:26614596-26614615 Msa1187160:CDS 40.0%
TCCTATTGTGGAGATGGTAT+GGG + chr8_1:26614602-26614621 Msa1187160:CDS 40.0%
ACACATGAAACAACAACCAC+AGG + chr8_1:26614651-26614670 Msa1187160:CDS 40.0%
ATCTCTTTCAGAAGATCCTG+TGG - chr8_1:26614670-26614689 None:intergenic 40.0%
! CAGGATCTTCTGAAAGAGAT+TGG + chr8_1:26614670-26614689 Msa1187160:CDS 40.0%
TTATCATTGCCACCTTTGCT+TGG + chr8_1:26614712-26614731 Msa1187160:CDS 40.0%
TATCATTGCCACCTTTGCTT+GGG + chr8_1:26614713-26614732 Msa1187160:CDS 40.0%
!! TTCTGTATGGAGGATTGGTT+GGG + chr8_1:26615006-26615025 Msa1187160:CDS 40.0%
ATGGAAGATCCTTACAGCAT+AGG - chr8_1:26615053-26615072 None:intergenic 40.0%
TACATAGTATGCCAAGCTTG+AGG - chr8_1:26615465-26615484 None:intergenic 40.0%
AGCTTGGCATACTATGTACA+AGG + chr8_1:26615467-26615486 Msa1187160:CDS 40.0%
GCTTGGCATACTATGTACAA+GGG + chr8_1:26615468-26615487 Msa1187160:CDS 40.0%
!! GATCATCATAAGTGGGCTAA+AGG - chr8_1:26615531-26615550 None:intergenic 40.0%
CAGAGTAAATCTGTTCTGCA+AGG - chr8_1:26615580-26615599 None:intergenic 40.0%
CTTGCAGAACAGATTTACTC+TGG + chr8_1:26615578-26615597 Msa1187160:CDS 40.0%
CAGAACAGATTTACTCTGGA+GGG + chr8_1:26615582-26615601 Msa1187160:CDS 40.0%
! GGTGCCATCTTGATTGTTAT+AGG + chr8_1:26616250-26616269 Msa1187160:CDS 40.0%
CTCATTTGAGCACCCTTTAT+TGG - chr8_1:26616343-26616362 None:intergenic 40.0%
!! ATAAAGGGTGCTCAAATGAG+TGG + chr8_1:26616343-26616362 Msa1187160:CDS 40.0%
AAGGGACAAAATGGGGATAA+TGG - chr8_1:26616560-26616579 None:intergenic 40.0%
GGGAGGAAAACTTGGTAAAA+AGG - chr8_1:26616579-26616598 None:intergenic 40.0%
GAGGAAGAACACTTGCAAGA+AGG - chr8_1:26613176-26613195 None:intergenic 45.0%
GATAAACGACGAGGACATAG+TGG - chr8_1:26613404-26613423 None:intergenic 45.0%
AGACTAACCCAAGAAGAGCT+AGG - chr8_1:26613606-26613625 None:intergenic 45.0%
TCATTGCACACGAGAAGGTT+GGG - chr8_1:26613941-26613960 None:intergenic 45.0%
! TCCAGCCATGACTTTTGTGA+TGG + chr8_1:26613971-26613990 Msa1187160:CDS 45.0%
!! CTCTAGCGACGAGGTTTTAA+AGG - chr8_1:26614233-26614252 None:intergenic 45.0%
!! GGAACAGTATTGACAGTAGC+TGG + chr8_1:26614552-26614571 Msa1187160:CDS 45.0%
GTCCTATTGTGGAGATGGTA+TGG + chr8_1:26614601-26614620 Msa1187160:CDS 45.0%
AAAGAGTGAAGCCCAAGCAA+AGG - chr8_1:26614727-26614746 None:intergenic 45.0%
CTGAGCATGATCCTTCTGTA+TGG + chr8_1:26614993-26615012 Msa1187160:CDS 45.0%
AGCATGATCCTTCTGTATGG+AGG + chr8_1:26614996-26615015 Msa1187160:CDS 45.0%
GATCCTTCTGTATGGAGGAT+TGG + chr8_1:26615001-26615020 Msa1187160:CDS 45.0%
CAACCAATCCTCCATACAGA+AGG - chr8_1:26615007-26615026 None:intergenic 45.0%
! CTTCTGTATGGAGGATTGGT+TGG + chr8_1:26615005-26615024 Msa1187160:CDS 45.0%
TTGCTTCTGCCTATGCTGTA+AGG + chr8_1:26615041-26615060 Msa1187160:intron 45.0%
! ATGTACAAGGGCTGGTGATT+AGG + chr8_1:26615480-26615499 Msa1187160:CDS 45.0%
CTAAAGGCAGTTGCAAAGAC+AGG - chr8_1:26615515-26615534 None:intergenic 45.0%
GCAGAACAGATTTACTCTGG+AGG + chr8_1:26615581-26615600 Msa1187160:CDS 45.0%
AGTAGGCACAAGAAATCACG+AGG - chr8_1:26615901-26615920 None:intergenic 45.0%
! TGTTCTATGGGGAAAGCACA+AGG + chr8_1:26616282-26616301 Msa1187160:CDS 45.0%
TGAGCACCCTTTATTGGCAA+AGG - chr8_1:26616337-26616356 None:intergenic 45.0%
AAACAGTACAAGGGGTGATG+GGG - chr8_1:26616600-26616619 None:intergenic 45.0%
CAAACAGTACAAGGGGTGAT+GGG - chr8_1:26616601-26616620 None:intergenic 45.0%
TCAAACAGTACAAGGGGTGA+TGG - chr8_1:26616602-26616621 None:intergenic 45.0%
!!! TAATATATTTTATTTTTGTT+AGG + chr8_1:26615430-26615449 Msa1187160:intron 5.0%
!!! AATATATTTTATTTTTGTTA+GGG + chr8_1:26615431-26615450 Msa1187160:intron 5.0%
!!! ATTTCTAATTTTAAATTTAT+AGG + chr8_1:26615852-26615871 Msa1187160:intron 5.0%
GGACATAGTGGCTCATTCCT+TGG - chr8_1:26613392-26613411 None:intergenic 50.0%
AAGCATGGCGATAAACGACG+AGG - chr8_1:26613413-26613432 None:intergenic 50.0%
CATTGCACACGAGAAGGTTG+GGG - chr8_1:26613940-26613959 None:intergenic 50.0%
CTCATTGCACACGAGAAGGT+TGG - chr8_1:26613942-26613961 None:intergenic 50.0%
GTTGCTCATTGCACACGAGA+AGG - chr8_1:26613946-26613965 None:intergenic 50.0%
GCCATCACAAAAGTCATGGC+TGG - chr8_1:26613975-26613994 None:intergenic 50.0%
GCCCATACCATCTCCACAAT+AGG - chr8_1:26614606-26614625 None:intergenic 50.0%
GGGAATTGTGACCTCAAGCT+TGG + chr8_1:26615451-26615470 Msa1187160:intron 50.0%
GGCATACTATGTACAAGGGC+TGG + chr8_1:26615472-26615491 Msa1187160:CDS 50.0%
! GGGCTGGTGATTAGGAAGAA+AGG + chr8_1:26615488-26615507 Msa1187160:CDS 50.0%
ACTATGTGGGTGCAGTGTGA+TGG + chr8_1:26616228-26616247 Msa1187160:intron 50.0%
CTATGTGGGTGCAGTGTGAT+GGG + chr8_1:26616229-26616248 Msa1187160:intron 50.0%
! AACAGTACAAGGGGTGATGG+GGG - chr8_1:26616599-26616618 None:intergenic 50.0%
GAGTGAAGCCCAAGCAAAGG+TGG - chr8_1:26614724-26614743 None:intergenic 55.0%
!! GGTGATGGGGGAGGAAAACT+TGG - chr8_1:26616587-26616606 None:intergenic 55.0%
!! AGTACAAGGGGTGATGGGGG+AGG - chr8_1:26616596-26616615 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 26613158 26616698 26613158 ID=Msa1187160;Name=Msa1187160
chr8_1 mRNA 26613158 26616698 26613158 ID=Msa1187160-mRNA-1;Parent=Msa1187160;Name=Msa1187160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=121|1|1|1|1|1|7|197|400
chr8_1 exon 26613158 26613475 26613158 ID=Msa1187160-mRNA-1:exon:9356;Parent=Msa1187160-mRNA-1
chr8_1 exon 26613555 26613617 26613555 ID=Msa1187160-mRNA-1:exon:9357;Parent=Msa1187160-mRNA-1
chr8_1 exon 26613890 26614006 26613890 ID=Msa1187160-mRNA-1:exon:9358;Parent=Msa1187160-mRNA-1
chr8_1 exon 26614503 26614755 26614503 ID=Msa1187160-mRNA-1:exon:9359;Parent=Msa1187160-mRNA-1
chr8_1 exon 26614896 26615057 26614896 ID=Msa1187160-mRNA-1:exon:9360;Parent=Msa1187160-mRNA-1
chr8_1 exon 26615452 26615603 26615452 ID=Msa1187160-mRNA-1:exon:9361;Parent=Msa1187160-mRNA-1
chr8_1 exon 26616243 26616698 26616243 ID=Msa1187160-mRNA-1:exon:9362;Parent=Msa1187160-mRNA-1
chr8_1 five_prime_UTR 26613158 26613278 26613158 ID=Msa1187160-mRNA-1:five_prime_utr;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26613279 26613475 26613279 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26613555 26613617 26613555 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26613890 26614006 26613890 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26614503 26614755 26614503 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26614896 26615057 26614896 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26615452 26615603 26615452 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 CDS 26616243 26616501 26616243 ID=Msa1187160-mRNA-1:cds;Parent=Msa1187160-mRNA-1
chr8_1 three_prime_UTR 26616502 26616698 26616502 ID=Msa1187160-mRNA-1:three_prime_utr;Parent=Msa1187160-mRNA-1
Gene Sequence

>Msa1187160

ATGGCCATGGAAAAATCAAATTCCTTTGAGAACATGAAGCATTACACTGCTATGATATGTTTACAATTTGGCTATGCTGGTATGAACATTATCACTAAGGTTTCTCTCAACCAAGGAATGAGCCACTATGTCCTCGTCGTTTATCGCCATGCTTTTGCAACTGCTTCTATAGCTCCATTTGCATTTATGTTTGAGAGGAAAGGCCAACCTAAGATAACCTTCCGAATTTTCTTGCAAATTTTCATCCTAGCTCTTCTTGGGCCAGTGATTGATCAAAATTTCTATTATGCTGGATTGAAGCTCACATCCCCAACCTTCTCGTGTGCAATGAGCAACGTGCTTCCAGCCATGACTTTTGTGATGGCAGTTTTATGCAGGATGGAGAAGATAAACATAAAGCAAGTGAGATGCCAAGCAAAGATATTGGGAACAGTATTGACAGTAGCTGGTGCAATGCTAATGACATTATATAAAGGTCCTATTGTGGAGATGGTATGGGCCAAAAATAGACATCCTCAAAATGAAACACATGAAACAACAACCACAGGATCTTCTGAAAGAGATTGGATTTTAGGGTGCACTTTTCTTATCATTGCCACCTTTGCTTGGGCTTCACTCTTTGTTTTGCAAGCAAAAGTTATAGAGACGTACAAGCATCATCAACTAAGTCTTACTTCACTTGTGGTCTTTATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTGGCTGAGCATGATCCTTCTGTATGGAGGATTGGTTGGGATATGAGTTTACTTGCTTCTGCCTATGCTGGAATTGTGACCTCAAGCTTGGCATACTATGTACAAGGGCTGGTGATTAGGAAGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCACTTATGATGATCATTGTTGCAATCATGGGATCCTTTATCCTTGCAGAACAGATTTACTCTGGAGGTGTGATGGGTGCCATCTTGATTGTTATAGGCTTATATTCTGTTCTATGGGGAAAGCACAAGGAAGAAATAGAGAGAAAAGTAGATGATATTCCTTTGCCAATAAAGGGTGCTCAAATGAGTGGAAATTCAAGTCTAGTGATTGATGACACAGATCAAGTAAAACATGGTCAAGTTGAAGATACCAACAACATGCTTTCTTCAGTTGCAATAAGCATTCCTACTAGAGAACCTACTACTAATAATGTTAACCAGCAATAA

Protein sequence

>Msa1187160

MAMEKSNSFENMKHYTAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATASIAPFAFMFERKGQPKITFRIFLQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVLCRMEKINIKQVRCQAKILGTVLTVAGAMLMTLYKGPIVEMVWAKNRHPQNETHETTTTGSSERDWILGCTFLIIATFAWASLFVLQAKVIETYKHHQLSLTSLVVFIGTLQAIAVTFVAEHDPSVWRIGWDMSLLASAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAEQIYSGGVMGAILIVIGLYSVLWGKHKEEIERKVDDIPLPIKGAQMSGNSSLVIDDTDQVKHGQVEDTNNMLSSVAISIPTREPTTNNVNQQ*