AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529320 MtrunA17_Chr4g0011281 99.773 440 1 0 1 440 1 440 0.0 907
Msa0529320 MtrunA17_Chr7g0230291 82.629 426 66 3 15 440 4 421 0.0 728
Msa0529320 MtrunA17_Chr4g0056941 69.431 422 125 3 11 432 7 424 0.0 603
Msa0529320 MtrunA17_Chr4g0073351 67.431 436 132 4 8 440 6 434 0.0 593
Msa0529320 MtrunA17_Chr3g0121661 66.047 430 134 3 13 432 3 430 0.0 585
Msa0529320 MtrunA17_Chr5g0398811 76.294 367 85 1 69 433 56 422 0.0 581
Msa0529320 MtrunA17_Chr8g0359401 27.545 334 213 8 102 428 8 319 8.54e-22 98.2
Msa0529320 MtrunA17_Chr8g0386331 28.614 332 199 12 103 412 8 323 1.11e-21 95.9
Msa0529320 MtrunA17_Chr2g0293521 26.087 345 219 12 103 427 73 401 2.03e-20 92.8
Msa0529320 MtrunA17_Chr2g0314601 26.822 343 208 8 102 430 8 321 2.19e-20 94.0
Msa0529320 MtrunA17_Chr5g0396581 26.039 361 230 12 91 433 38 379 2.59e-20 92.4
Msa0529320 MtrunA17_Chr8g0388261 27.576 330 205 12 102 412 5 319 6.06e-20 90.9
Msa0529320 MtrunA17_Chr1g0147841 25.519 337 220 10 102 430 6 319 2.43e-19 90.9
Msa0529320 MtrunA17_Chr4g0067461 25.397 441 251 17 8 425 20 405 5.01e-19 89.0
Msa0529320 MtrunA17_Chr5g0396571 26.923 338 203 11 99 412 2 319 8.21e-19 87.4
Msa0529320 MtrunA17_Chr8g0380921 25.143 350 226 11 103 432 73 406 1.05e-17 84.7
Msa0529320 MtrunA17_Chr4g0031131 24.471 331 212 11 98 421 29 328 2.23e-17 83.2
Msa0529320 MtrunA17_Chr1g0195521 24.929 353 206 12 98 425 115 433 7.00e-17 82.4
Msa0529320 MtrunA17_Chr7g0274131 25.000 336 210 13 103 427 31 335 1.90e-15 77.8
Msa0529320 MtrunA17_Chr1g0190771 24.189 339 214 12 101 427 28 335 6.17e-15 76.3
Msa0529320 MtrunA17_Chr2g0327981 24.324 333 210 12 98 421 35 334 1.27e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529320 AT4G00110.1 86.667 435 51 4 4 438 1 428 0.0 770
Msa0529320 AT1G02000.1 84.828 435 59 5 7 439 1 430 0.0 751
Msa0529320 AT2G45310.1 78.851 435 88 3 7 438 1 434 0.0 693
Msa0529320 AT4G12250.1 73.059 438 105 4 7 437 1 432 0.0 621
Msa0529320 AT3G23820.1 77.557 352 79 0 81 432 92 443 0.0 582
Msa0529320 AT4G30440.1 67.907 430 126 4 11 438 6 425 0.0 564
Msa0529320 AT4G23920.1 27.350 351 215 12 102 430 4 336 4.24e-23 100
Msa0529320 AT1G12780.1 28.657 335 197 13 102 412 8 324 1.11e-22 99.0
Msa0529320 AT1G63180.1 28.443 334 199 12 102 412 8 324 5.13e-21 94.4
Msa0529320 AT1G78570.1 26.647 334 216 8 102 428 8 319 8.91e-21 95.5
Msa0529320 AT3G14790.2 26.647 334 216 8 102 428 11 322 2.30e-20 94.4
Msa0529320 AT3G14790.1 26.647 334 216 8 102 428 8 319 2.57e-20 94.4
Msa0529320 AT4G10960.1 26.891 357 209 13 102 430 5 337 7.81e-20 90.9
Msa0529320 AT1G30620.3 25.507 345 221 11 103 427 72 400 4.14e-19 89.4
Msa0529320 AT1G30620.1 25.507 345 221 11 103 427 73 401 4.53e-19 89.4
Msa0529320 AT1G30620.6 25.507 345 221 11 103 427 73 401 4.53e-19 89.4
Msa0529320 AT1G30620.4 25.507 345 221 11 103 427 73 401 4.53e-19 89.4
Msa0529320 AT1G30620.2 25.507 345 221 11 103 427 73 401 4.53e-19 89.4
Msa0529320 AT1G53500.1 26.393 341 208 8 102 428 10 321 9.18e-19 89.4
Msa0529320 AT5G44480.3 24.709 344 225 10 103 427 73 401 1.81e-18 87.4
Msa0529320 AT5G44480.4 24.709 344 225 10 103 427 73 401 1.81e-18 87.4
Msa0529320 AT5G44480.2 24.709 344 225 10 103 427 73 401 1.81e-18 87.4
Msa0529320 AT5G44480.1 24.709 344 225 10 103 427 97 425 2.19e-18 87.4
Msa0529320 AT3G62830.2 25.507 345 200 12 98 426 116 419 8.28e-18 85.9
Msa0529320 AT3G62830.1 25.507 345 200 12 98 426 116 419 8.28e-18 85.9
Msa0529320 AT3G53520.1 25.294 340 215 10 98 430 117 424 1.41e-17 85.1
Msa0529320 AT1G64440.1 25.281 356 220 12 102 434 4 336 1.43e-17 84.0
Msa0529320 AT2G47650.1 24.122 427 252 16 32 426 35 421 4.01e-17 83.6
Msa0529320 AT4G20460.1 25.212 353 227 12 96 427 64 400 4.57e-17 83.2
Msa0529320 AT2G28760.1 25.225 333 207 13 98 421 28 327 6.41e-17 82.0
Msa0529320 AT2G28760.2 25.225 333 207 13 98 421 28 327 6.41e-17 82.0
Msa0529320 AT2G28760.3 25.225 333 207 13 98 421 28 327 6.41e-17 82.0
Msa0529320 AT2G28760.4 25.225 333 207 13 98 421 59 358 8.40e-17 82.0
Msa0529320 AT1G63180.2 28.188 298 175 11 102 376 8 289 9.35e-17 81.3
Msa0529320 AT3G53520.2 25.000 340 214 11 98 430 117 422 1.73e-15 78.6
Msa0529320 AT2G47650.2 24.249 433 250 18 32 426 35 427 4.01e-15 77.4
Msa0529320 AT5G59290.2 24.085 328 207 12 103 421 47 341 7.62e-15 76.3
Msa0529320 AT5G59290.1 24.085 328 207 12 103 421 32 326 8.44e-15 75.9
Msa0529320 AT5G59290.4 24.085 328 207 12 103 421 3 297 9.26e-15 75.5
Msa0529320 AT5G59290.3 24.085 328 207 12 103 421 25 319 1.04e-14 75.5
Msa0529320 AT3G46440.2 23.353 334 214 12 97 421 25 325 1.25e-14 75.1
Msa0529320 AT3G46440.1 23.353 334 214 12 97 421 25 325 1.25e-14 75.1
Msa0529320 AT3G53520.3 27.083 240 153 6 98 331 117 340 2.61e-14 74.3
Msa0529320 AT3G53520.4 24.011 354 225 12 98 430 117 447 3.57e-14 74.7
Msa0529320 AT1G30620.5 27.128 188 133 3 103 288 73 258 1.38e-13 71.6

Find 115 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGTTCTAGTTCTGTTTA+TGG 0.169613 4_1:-2798887 Msa0529320:CDS
GTTCTATCCCTTTCAGAAAA+AGG 0.194999 4_1:+2798848 None:intergenic
ATCTATGGTCTTTCTTTAAC+TGG 0.228130 4_1:-2798755 Msa0529320:CDS
ATCCTCAACCTTCAATTGTT+TGG 0.242672 4_1:-2798910 Msa0529320:CDS
CTCCGGCGAAGCTTTGTCTT+TGG 0.247408 4_1:-2799450 Msa0529320:CDS
TATCTGAATTACTATTCTTC+TGG 0.256882 4_1:-2798278 Msa0529320:CDS
TAGTGATCTTGTGGGTATTT+TGG 0.296077 4_1:-2798459 Msa0529320:CDS
TTCTCCATCTTGAACTTTCC+CGG 0.301644 4_1:+2799508 None:intergenic
TCCTCAACCTTCAATTGTTT+GGG 0.302294 4_1:-2798909 Msa0529320:CDS
AAATGCATCACATGAGTAAA+AGG 0.305224 4_1:+2799037 None:intergenic
TTTCACTGTTTATGGTCCTT+GGG 0.318056 4_1:-2798723 Msa0529320:CDS
TCCTTGGGGTAGGCCTGATA+TGG 0.329537 4_1:-2798708 Msa0529320:CDS
CAAACTGGGGTGGTCCCGTT+TGG 0.334864 4_1:-2799327 Msa0529320:CDS
GCGTGCAAGACAAGCACTTT+TGG 0.348677 4_1:-2799134 Msa0529320:CDS
GTCTTTCTTTAACTGGTTTG+AGG 0.353381 4_1:-2798748 Msa0529320:CDS
TATGTTCATAGTAACATTGC+TGG 0.365279 4_1:-2798968 Msa0529320:CDS
CATTGAGGAGTCCTTCAAAC+TGG 0.372195 4_1:-2799342 Msa0529320:CDS
CATACTTATAATCATATCTA+TGG 0.393449 4_1:-2798770 Msa0529320:CDS
AAACTGGGGTGGTCCCGTTT+GGG 0.395396 4_1:-2799326 Msa0529320:CDS
TTATGAAGTTGCCGAGGAAT+GGG 0.400306 4_1:-2798403 Msa0529320:CDS
ATCTGAATTACTATTCTTCT+GGG 0.411188 4_1:-2798277 Msa0529320:CDS
CTGTTTATGGTCCTTGGGGT+AGG 0.421551 4_1:-2798718 Msa0529320:CDS
CTCTTCCGGCGGATCCTTCA+CGG 0.423752 4_1:-2799369 Msa0529320:CDS
CTGGAAGTGGTGGGAAGAAG+AGG 0.431142 4_1:-2798535 Msa0529320:CDS
TCAATGATGCTGCTTTGTTA+AGG 0.431669 4_1:-2799078 Msa0529320:CDS
GTTCTTGTGACCGGAGCTGC+TGG 0.437389 4_1:-2799253 Msa0529320:CDS
TCCGGCGACTTCTCCTCTTC+CGG 0.441112 4_1:-2799383 Msa0529320:CDS
GGAGAGGCTGTTGAAGACTA+AGG 0.443396 4_1:-2798438 Msa0529320:CDS
TGTACGGTGGCACGCTTCTC+CGG 0.452864 4_1:-2799467 Msa0529320:CDS
GAACTAGCCCAAACAATTGA+AGG 0.455646 4_1:+2798902 None:intergenic
TGTCTTGCACGCTTCAAAGA+AGG 0.457699 4_1:+2799145 None:intergenic
ATACCCACAAGATCACTAAC+AGG 0.465851 4_1:+2798464 None:intergenic
AACAGTGCTCCGTCGACGCC+GGG 0.468408 4_1:-2799526 Msa0529320:CDS
ATTATGAAGTTGCCGAGGAA+TGG 0.468878 4_1:-2798404 Msa0529320:CDS
TGTTTATGGATTGAATACTA+AGG 0.472188 4_1:-2798873 Msa0529320:CDS
ATGCATTTGGCTGCTCAAGC+TGG 0.474694 4_1:-2799022 Msa0529320:CDS
ACAAGATCACTAACAGGAAC+AGG 0.475033 4_1:+2798470 None:intergenic
TCCGACGAAACCAGCAGCTC+CGG 0.477531 4_1:+2799243 None:intergenic
GCGCTTAAACGCCGCGGAGA+CGG 0.482259 4_1:-2799205 Msa0529320:CDS
GTTCCTGTTAGTGATCTTGT+GGG 0.482574 4_1:-2798467 Msa0529320:CDS
CGGAGAATCCGTTCCGTGAC+CGG 0.489325 4_1:+2799275 None:intergenic
TCCGTTCCTCCGCTAGAGTC+CGG 0.497044 4_1:-2799294 Msa0529320:CDS
CTCCAAAGACAAAGCTTCGC+CGG 0.498173 4_1:+2799448 None:intergenic
AGTTATGCGCAGAGAGAGCT+TGG 0.500038 4_1:-2798353 Msa0529320:CDS
CGGACACGTTTCTCCCAAAC+GGG 0.500537 4_1:+2799313 None:intergenic
GATACTGCTGAGAAGAGTAC+TGG 0.501421 4_1:-2798554 Msa0529320:CDS
CTTCTTACTTCAACCGTGTA+CGG 0.502910 4_1:-2799483 Msa0529320:CDS
ACGGGACCACCCCAGTTTGA+AGG 0.504384 4_1:+2799331 None:intergenic
GAGAGAGCTTGGTTATAAAC+CGG 0.506070 4_1:-2798342 Msa0529320:CDS
CGTGAAGGATCCGCCGGAAG+AGG 0.507828 4_1:+2799370 None:intergenic
GGATTCTCCGTTCTTGTGAC+CGG 0.510300 4_1:-2799262 Msa0529320:CDS
AGTATGTGCGATTTCTTCAC+CGG 0.510777 4_1:+2798787 None:intergenic
TAAACCGGTGACGGATCTGC+AGG 0.513367 4_1:-2798327 Msa0529320:CDS
TGTTCCTGTTAGTGATCTTG+TGG 0.519953 4_1:-2798468 Msa0529320:CDS
ACGGACACGTTTCTCCCAAA+CGG 0.521018 4_1:+2799312 None:intergenic
GCCCAAACAATTGAAGGTTG+AGG 0.535698 4_1:+2798908 None:intergenic
ACCGGAGCTGCTGGTTTCGT+CGG 0.536422 4_1:-2799244 Msa0529320:CDS
TGGAAGTGGTGGGAAGAAGA+GGG 0.543352 4_1:-2798534 Msa0529320:CDS
TTCACTGTTTATGGTCCTTG+GGG 0.546844 4_1:-2798722 Msa0529320:CDS
TTGAAAACCCTCAACTGTGC+CGG 0.546878 4_1:+2798509 None:intergenic
ATTGAGGAGTCCTTCAAACT+GGG 0.549385 4_1:-2799341 Msa0529320:CDS
TTATATTGATGATATTGTGA+GGG 0.550359 4_1:-2798594 Msa0529320:CDS
GAGGAGAAGTCGCCGGAGAA+CGG 0.554120 4_1:+2799389 None:intergenic
ATCCTTCACGGCGGTCATTG+AGG 0.554298 4_1:-2799357 Msa0529320:CDS
AACTGCACATCCCCATTCCT+CGG 0.554769 4_1:+2798392 None:intergenic
TAACAGTGCTCCGTCGACGC+CGG 0.562127 4_1:-2799527 Msa0529320:CDS
GTAGCGGCATACAAACTAGC+AGG 0.564565 4_1:+2798818 None:intergenic
TTGAACTTTCCCGGCGTCGA+CGG 0.565515 4_1:+2799517 None:intergenic
TTCACCGGCTTTCTTAGTAG+CGG 0.567698 4_1:+2798802 None:intergenic
GAGAAGCGTGCCACCGTACA+CGG 0.567964 4_1:+2799470 None:intergenic
AGCAGCTCCGGTCACAAGAA+CGG 0.569637 4_1:+2799255 None:intergenic
CTCCTCAATGACCGCCGTGA+AGG 0.571394 4_1:+2799355 None:intergenic
GACCGCCGTGAAGGATCCGC+CGG 0.572692 4_1:+2799364 None:intergenic
CCGGTGACGGATCTGCAGGC+TGG 0.573224 4_1:-2798323 Msa0529320:CDS
ACCGGACTCTAGCGGAGGAA+CGG 0.574251 4_1:+2799293 None:intergenic
CTTATATTGATGATATTGTG+AGG 0.578974 4_1:-2798595 Msa0529320:CDS
GAAGTGGTGGGAAGAAGAGG+GGG 0.582983 4_1:-2798532 Msa0529320:CDS
CGAATCATGGTACCGTTGCG+AGG 0.585042 4_1:-2798625 Msa0529320:CDS
AGCTGGTGTGAGGTATGCTA+TGG 0.586552 4_1:-2799005 Msa0529320:CDS
AGGTATGCTATGGAGAATCC+TGG 0.586560 4_1:-2798995 Msa0529320:CDS
CCAGCCTGCAGATCCGTCAC+CGG 0.597830 4_1:+2798323 None:intergenic
GGCGACTTCTCCTCTTCCGG+CGG 0.600873 4_1:-2799380 Msa0529320:CDS
GGAAGTGGTGGGAAGAAGAG+GGG 0.607007 4_1:-2798533 Msa0529320:CDS
CCTCCGCTAGAGTCCGGTCA+CGG 0.608900 4_1:-2799288 Msa0529320:CDS
TATGAAGTTGCCGAGGAATG+GGG 0.609964 4_1:-2798402 Msa0529320:CDS
GCTAGAGTCCGGTCACGGAA+CGG 0.610673 4_1:-2799283 Msa0529320:CDS
GAATCATGGTACCGTTGCGA+GGG 0.611200 4_1:-2798624 Msa0529320:CDS
GCCGGAAGAGGAGAAGTCGC+CGG 0.613076 4_1:+2799382 None:intergenic
TATGCCGCTACTAAGAAAGC+CGG 0.617216 4_1:-2798806 Msa0529320:CDS
GCTTGGTTATAAACCGGTGA+CGG 0.619019 4_1:-2798336 Msa0529320:CDS
GAGAAGAGTACTGGAAGTGG+TGG 0.623154 4_1:-2798545 Msa0529320:CDS
GTTTGAAGAAATTTGTGAGG+TGG 0.624134 4_1:-2798301 Msa0529320:CDS
TGGCTGCTCAAGCTGGTGTG+AGG 0.625330 4_1:-2799015 Msa0529320:CDS
GCCATATCAGGCCTACCCCA+AGG 0.630669 4_1:+2798707 None:intergenic
GCTGAGAAGAGTACTGGAAG+TGG 0.633054 4_1:-2798548 Msa0529320:CDS
GACGCCGGGAAAGTTCAAGA+TGG 0.634115 4_1:-2799512 Msa0529320:CDS
TCCGCGGCGCTTAAACGCCG+CGG 0.635349 4_1:-2799211 Msa0529320:CDS
TCCGCGGCGTTTAAGCGCCG+CGG 0.637292 4_1:+2799210 None:intergenic
CTGGTTTGAAGAAATTTGTG+AGG 0.647230 4_1:-2798304 Msa0529320:CDS
AGGAGTCCTTCAAACTGGGG+TGG 0.647390 4_1:-2799337 Msa0529320:CDS
ATAAGTAAAATCCCTCGCAA+CGG 0.649166 4_1:+2798613 None:intergenic
TGTTGAAGACTAAGGCAAAG+AGG 0.649703 4_1:-2798430 Msa0529320:CDS
TCCCTAAAACACCGTCTCCG+CGG 0.649971 4_1:+2799194 None:intergenic
AGAAGAGTACTGGAAGTGGT+GGG 0.649979 4_1:-2798544 Msa0529320:CDS
GTTCCGTGACCGGACTCTAG+CGG 0.650330 4_1:+2799285 None:intergenic
GGAATATTATGAAGTTGCCG+AGG 0.656687 4_1:-2798409 Msa0529320:CDS
CTTACTTCAACCGTGTACGG+TGG 0.659507 4_1:-2799480 Msa0529320:CDS
CCGTGACCGGACTCTAGCGG+AGG 0.659987 4_1:+2799288 None:intergenic
TATATTGATGATATTGTGAG+GGG 0.666488 4_1:-2798593 Msa0529320:CDS
ATCACTAACAGGAACAGGCG+AGG 0.666779 4_1:+2798475 None:intergenic
TTACTATGAACATAAGAACC+AGG 0.683714 4_1:+2798977 None:intergenic
TTGAGGAGTCCTTCAAACTG+GGG 0.690015 4_1:-2799340 Msa0529320:CDS
CGTCGGAACACATGTCTCCG+CGG 0.690793 4_1:-2799227 Msa0529320:CDS
ATATTGATGATATTGTGAGG+GGG 0.741076 4_1:-2798592 Msa0529320:CDS
TTCCGGCGGATCCTTCACGG+CGG 0.781786 4_1:-2799366 Msa0529320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATACTTATAATCATATCTA+TGG - chr4_1:2799048-2799067 Msa0529320:CDS 20.0%
!!! TTATATTGATGATATTGTGA+GGG - chr4_1:2799224-2799243 Msa0529320:CDS 20.0%
!! CATACTTATAATCATATCTA+TGG - chr4_1:2799048-2799067 Msa0529320:CDS 20.0%
!!! TTATATTGATGATATTGTGA+GGG - chr4_1:2799224-2799243 Msa0529320:CDS 20.0%
!! TGTTTATGGATTGAATACTA+AGG - chr4_1:2798945-2798964 Msa0529320:CDS 25.0%
! AAAAAGAAATAAGCCATATC+AGG + chr4_1:2799126-2799145 None:intergenic 25.0%
!!! TTTCACTAGAGATATTTTGA+AGG - chr4_1:2799143-2799162 Msa0529320:CDS 25.0%
!!! TTCACTAGAGATATTTTGAA+GGG - chr4_1:2799144-2799163 Msa0529320:CDS 25.0%
!! CTTATATTGATGATATTGTG+AGG - chr4_1:2799223-2799242 Msa0529320:CDS 25.0%
!! TATATTGATGATATTGTGAG+GGG - chr4_1:2799225-2799244 Msa0529320:CDS 25.0%
! TATCTGAATTACTATTCTTC+TGG - chr4_1:2799540-2799559 Msa0529320:CDS 25.0%
! ATCTGAATTACTATTCTTCT+GGG - chr4_1:2799541-2799560 Msa0529320:CDS 25.0%
!! TGTTTATGGATTGAATACTA+AGG - chr4_1:2798945-2798964 Msa0529320:CDS 25.0%
! AAAAAGAAATAAGCCATATC+AGG + chr4_1:2799126-2799145 None:intergenic 25.0%
!!! TTTCACTAGAGATATTTTGA+AGG - chr4_1:2799143-2799162 Msa0529320:CDS 25.0%
!!! TTCACTAGAGATATTTTGAA+GGG - chr4_1:2799144-2799163 Msa0529320:CDS 25.0%
!! CTTATATTGATGATATTGTG+AGG - chr4_1:2799223-2799242 Msa0529320:CDS 25.0%
!! TATATTGATGATATTGTGAG+GGG - chr4_1:2799225-2799244 Msa0529320:CDS 25.0%
! TATCTGAATTACTATTCTTC+TGG - chr4_1:2799540-2799559 Msa0529320:CDS 25.0%
! ATCTGAATTACTATTCTTCT+GGG - chr4_1:2799541-2799560 Msa0529320:CDS 25.0%
! TTTGTTAAGGAAGCTTTTTG+AGG - chr4_1:2798753-2798772 Msa0529320:CDS 30.0%
AAATGCATCACATGAGTAAA+AGG + chr4_1:2798784-2798803 None:intergenic 30.0%
! TTTTACTCATGTGATGCATT+TGG - chr4_1:2798783-2798802 Msa0529320:CDS 30.0%
TTACTATGAACATAAGAACC+AGG + chr4_1:2798844-2798863 None:intergenic 30.0%
TATGTTCATAGTAACATTGC+TGG - chr4_1:2798850-2798869 Msa0529320:CDS 30.0%
!!! TGGTTTTGTTAATTTGCTTG+AGG - chr4_1:2798870-2798889 Msa0529320:CDS 30.0%
!! TAAGGTTCCTTTTTCTGAAA+GGG - chr4_1:2798963-2798982 Msa0529320:CDS 30.0%
ATCTATGGTCTTTCTTTAAC+TGG - chr4_1:2799063-2799082 Msa0529320:CDS 30.0%
! TTGAGGTTTTTCACTGTTTA+TGG - chr4_1:2799087-2799106 Msa0529320:CDS 30.0%
!! TCACTAGAGATATTTTGAAG+GGG - chr4_1:2799145-2799164 Msa0529320:CDS 30.0%
! ATATTGATGATATTGTGAGG+GGG - chr4_1:2799226-2799245 Msa0529320:CDS 30.0%
! TTTGTTAAGGAAGCTTTTTG+AGG - chr4_1:2798753-2798772 Msa0529320:CDS 30.0%
AAATGCATCACATGAGTAAA+AGG + chr4_1:2798784-2798803 None:intergenic 30.0%
! TTTTACTCATGTGATGCATT+TGG - chr4_1:2798783-2798802 Msa0529320:CDS 30.0%
TTACTATGAACATAAGAACC+AGG + chr4_1:2798844-2798863 None:intergenic 30.0%
TATGTTCATAGTAACATTGC+TGG - chr4_1:2798850-2798869 Msa0529320:CDS 30.0%
!!! TGGTTTTGTTAATTTGCTTG+AGG - chr4_1:2798870-2798889 Msa0529320:CDS 30.0%
!! TAAGGTTCCTTTTTCTGAAA+GGG - chr4_1:2798963-2798982 Msa0529320:CDS 30.0%
ATCTATGGTCTTTCTTTAAC+TGG - chr4_1:2799063-2799082 Msa0529320:CDS 30.0%
! TTGAGGTTTTTCACTGTTTA+TGG - chr4_1:2799087-2799106 Msa0529320:CDS 30.0%
!! TCACTAGAGATATTTTGAAG+GGG - chr4_1:2799145-2799164 Msa0529320:CDS 30.0%
! ATATTGATGATATTGTGAGG+GGG - chr4_1:2799226-2799245 Msa0529320:CDS 30.0%
! ACTGGTGTTTTCATTGTTGA+AGG - chr4_1:2798712-2798731 Msa0529320:CDS 35.0%
!! TCAATGATGCTGCTTTGTTA+AGG - chr4_1:2798740-2798759 Msa0529320:CDS 35.0%
ATCCTCAACCTTCAATTGTT+TGG - chr4_1:2798908-2798927 Msa0529320:CDS 35.0%
TCCTCAACCTTCAATTGTTT+GGG - chr4_1:2798909-2798928 Msa0529320:CDS 35.0%
!! GCTAGTTCTAGTTCTGTTTA+TGG - chr4_1:2798931-2798950 Msa0529320:CDS 35.0%
! CTAAGGTTCCTTTTTCTGAA+AGG - chr4_1:2798962-2798981 Msa0529320:CDS 35.0%
GTTCTATCCCTTTCAGAAAA+AGG + chr4_1:2798973-2798992 None:intergenic 35.0%
!! GTCTTTCTTTAACTGGTTTG+AGG - chr4_1:2799070-2799089 Msa0529320:CDS 35.0%
! TTTTCACTGTTTATGGTCCT+TGG - chr4_1:2799094-2799113 Msa0529320:CDS 35.0%
TTTCACTGTTTATGGTCCTT+GGG - chr4_1:2799095-2799114 Msa0529320:CDS 35.0%
!! GAAGACTATTCCCATTTTTG+AGG - chr4_1:2799167-2799186 Msa0529320:CDS 35.0%
ATAAGTAAAATCCCTCGCAA+CGG + chr4_1:2799208-2799227 None:intergenic 35.0%
! ACAGTTGAGGGTTTTCAATT+TGG - chr4_1:2799314-2799333 Msa0529320:CDS 35.0%
! CAGTTGAGGGTTTTCAATTT+GGG - chr4_1:2799315-2799334 Msa0529320:CDS 35.0%
! AGTTGAGGGTTTTCAATTTG+GGG - chr4_1:2799316-2799335 Msa0529320:CDS 35.0%
! TAGTGATCTTGTGGGTATTT+TGG - chr4_1:2799359-2799378 Msa0529320:CDS 35.0%
! CTGGTTTGAAGAAATTTGTG+AGG - chr4_1:2799514-2799533 Msa0529320:CDS 35.0%
GTTTGAAGAAATTTGTGAGG+TGG - chr4_1:2799517-2799536 Msa0529320:CDS 35.0%
! ACTGGTGTTTTCATTGTTGA+AGG - chr4_1:2798712-2798731 Msa0529320:CDS 35.0%
!! TCAATGATGCTGCTTTGTTA+AGG - chr4_1:2798740-2798759 Msa0529320:CDS 35.0%
ATCCTCAACCTTCAATTGTT+TGG - chr4_1:2798908-2798927 Msa0529320:CDS 35.0%
TCCTCAACCTTCAATTGTTT+GGG - chr4_1:2798909-2798928 Msa0529320:CDS 35.0%
!! GCTAGTTCTAGTTCTGTTTA+TGG - chr4_1:2798931-2798950 Msa0529320:CDS 35.0%
! CTAAGGTTCCTTTTTCTGAA+AGG - chr4_1:2798962-2798981 Msa0529320:CDS 35.0%
GTTCTATCCCTTTCAGAAAA+AGG + chr4_1:2798973-2798992 None:intergenic 35.0%
!! GTCTTTCTTTAACTGGTTTG+AGG - chr4_1:2799070-2799089 Msa0529320:CDS 35.0%
! TTTTCACTGTTTATGGTCCT+TGG - chr4_1:2799094-2799113 Msa0529320:CDS 35.0%
TTTCACTGTTTATGGTCCTT+GGG - chr4_1:2799095-2799114 Msa0529320:CDS 35.0%
!! GAAGACTATTCCCATTTTTG+AGG - chr4_1:2799167-2799186 Msa0529320:CDS 35.0%
ATAAGTAAAATCCCTCGCAA+CGG + chr4_1:2799208-2799227 None:intergenic 35.0%
! ACAGTTGAGGGTTTTCAATT+TGG - chr4_1:2799314-2799333 Msa0529320:CDS 35.0%
! CAGTTGAGGGTTTTCAATTT+GGG - chr4_1:2799315-2799334 Msa0529320:CDS 35.0%
! AGTTGAGGGTTTTCAATTTG+GGG - chr4_1:2799316-2799335 Msa0529320:CDS 35.0%
! TAGTGATCTTGTGGGTATTT+TGG - chr4_1:2799359-2799378 Msa0529320:CDS 35.0%
! CTGGTTTGAAGAAATTTGTG+AGG - chr4_1:2799514-2799533 Msa0529320:CDS 35.0%
GTTTGAAGAAATTTGTGAGG+TGG - chr4_1:2799517-2799536 Msa0529320:CDS 35.0%
TTCTCCATCTTGAACTTTCC+CGG + chr4_1:2798313-2798332 None:intergenic 40.0%
CTTCTTACTTCAACCGTGTA+CGG - chr4_1:2798335-2798354 Msa0529320:CDS 40.0%
! GATCTTCTTTTTCCGTTCTC+CGG - chr4_1:2798417-2798436 Msa0529320:CDS 40.0%
ATTGAGGAGTCCTTCAAACT+GGG - chr4_1:2798477-2798496 Msa0529320:CDS 40.0%
GAACTAGCCCAAACAATTGA+AGG + chr4_1:2798919-2798938 None:intergenic 40.0%
AGTATGTGCGATTTCTTCAC+CGG + chr4_1:2799034-2799053 None:intergenic 40.0%
TTCACTGTTTATGGTCCTTG+GGG - chr4_1:2799096-2799115 Msa0529320:CDS 40.0%
!! GACTATTCCCATTTTTGAGG+CGG - chr4_1:2799170-2799189 Msa0529320:CDS 40.0%
ACAAGATCACTAACAGGAAC+AGG + chr4_1:2799351-2799370 None:intergenic 40.0%
TGTTCCTGTTAGTGATCTTG+TGG - chr4_1:2799350-2799369 Msa0529320:CDS 40.0%
GTTCCTGTTAGTGATCTTGT+GGG - chr4_1:2799351-2799370 Msa0529320:CDS 40.0%
ATACCCACAAGATCACTAAC+AGG + chr4_1:2799357-2799376 None:intergenic 40.0%
!! ATCTTGTGGGTATTTTGGAG+AGG - chr4_1:2799364-2799383 Msa0529320:CDS 40.0%
TGTTGAAGACTAAGGCAAAG+AGG - chr4_1:2799388-2799407 Msa0529320:CDS 40.0%
GGAATATTATGAAGTTGCCG+AGG - chr4_1:2799409-2799428 Msa0529320:CDS 40.0%
ATTATGAAGTTGCCGAGGAA+TGG - chr4_1:2799414-2799433 Msa0529320:CDS 40.0%
TTATGAAGTTGCCGAGGAAT+GGG - chr4_1:2799415-2799434 Msa0529320:CDS 40.0%
GAGAGAGCTTGGTTATAAAC+CGG - chr4_1:2799476-2799495 Msa0529320:CDS 40.0%
TTCTCCATCTTGAACTTTCC+CGG + chr4_1:2798313-2798332 None:intergenic 40.0%
CTTCTTACTTCAACCGTGTA+CGG - chr4_1:2798335-2798354 Msa0529320:CDS 40.0%
! GATCTTCTTTTTCCGTTCTC+CGG - chr4_1:2798417-2798436 Msa0529320:CDS 40.0%
ATTGAGGAGTCCTTCAAACT+GGG - chr4_1:2798477-2798496 Msa0529320:CDS 40.0%
GAACTAGCCCAAACAATTGA+AGG + chr4_1:2798919-2798938 None:intergenic 40.0%
AGTATGTGCGATTTCTTCAC+CGG + chr4_1:2799034-2799053 None:intergenic 40.0%
TTCACTGTTTATGGTCCTTG+GGG - chr4_1:2799096-2799115 Msa0529320:CDS 40.0%
!! GACTATTCCCATTTTTGAGG+CGG - chr4_1:2799170-2799189 Msa0529320:CDS 40.0%
ACAAGATCACTAACAGGAAC+AGG + chr4_1:2799351-2799370 None:intergenic 40.0%
TGTTCCTGTTAGTGATCTTG+TGG - chr4_1:2799350-2799369 Msa0529320:CDS 40.0%
GTTCCTGTTAGTGATCTTGT+GGG - chr4_1:2799351-2799370 Msa0529320:CDS 40.0%
ATACCCACAAGATCACTAAC+AGG + chr4_1:2799357-2799376 None:intergenic 40.0%
!! ATCTTGTGGGTATTTTGGAG+AGG - chr4_1:2799364-2799383 Msa0529320:CDS 40.0%
TGTTGAAGACTAAGGCAAAG+AGG - chr4_1:2799388-2799407 Msa0529320:CDS 40.0%
GGAATATTATGAAGTTGCCG+AGG - chr4_1:2799409-2799428 Msa0529320:CDS 40.0%
ATTATGAAGTTGCCGAGGAA+TGG - chr4_1:2799414-2799433 Msa0529320:CDS 40.0%
TTATGAAGTTGCCGAGGAAT+GGG - chr4_1:2799415-2799434 Msa0529320:CDS 40.0%
GAGAGAGCTTGGTTATAAAC+CGG - chr4_1:2799476-2799495 Msa0529320:CDS 40.0%
CATTGAGGAGTCCTTCAAAC+TGG - chr4_1:2798476-2798495 Msa0529320:CDS 45.0%
TTGAGGAGTCCTTCAAACTG+GGG - chr4_1:2798478-2798497 Msa0529320:CDS 45.0%
TGTCTTGCACGCTTCAAAGA+AGG + chr4_1:2798676-2798695 None:intergenic 45.0%
!!! CAAGCACTTTTGGAACGTAC+TGG - chr4_1:2798694-2798713 Msa0529320:CDS 45.0%
AGGTATGCTATGGAGAATCC+TGG - chr4_1:2798823-2798842 Msa0529320:CDS 45.0%
GCCCAAACAATTGAAGGTTG+AGG + chr4_1:2798913-2798932 None:intergenic 45.0%
TATGCCGCTACTAAGAAAGC+CGG - chr4_1:2799012-2799031 Msa0529320:CDS 45.0%
!! TTCACCGGCTTTCTTAGTAG+CGG + chr4_1:2799019-2799038 None:intergenic 45.0%
TGATTCGCCGCCTCAAAAAT+GGG + chr4_1:2799180-2799199 None:intergenic 45.0%
ATGATTCGCCGCCTCAAAAA+TGG + chr4_1:2799181-2799200 None:intergenic 45.0%
!!! ATTTTTGAGGCGGCGAATCA+TGG - chr4_1:2799180-2799199 Msa0529320:CDS 45.0%
!! GATATTGTGAGGGGGTGTTT+AGG - chr4_1:2799234-2799253 Msa0529320:CDS 45.0%
! GATACTGCTGAGAAGAGTAC+TGG - chr4_1:2799264-2799283 Msa0529320:CDS 45.0%
!! AGAAGAGTACTGGAAGTGGT+GGG - chr4_1:2799274-2799293 Msa0529320:CDS 45.0%
TTGAAAACCCTCAACTGTGC+CGG + chr4_1:2799312-2799331 None:intergenic 45.0%
TATGAAGTTGCCGAGGAATG+GGG - chr4_1:2799416-2799435 Msa0529320:CDS 45.0%
GCTTGGTTATAAACCGGTGA+CGG - chr4_1:2799482-2799501 Msa0529320:CDS 45.0%
CATTGAGGAGTCCTTCAAAC+TGG - chr4_1:2798476-2798495 Msa0529320:CDS 45.0%
TTGAGGAGTCCTTCAAACTG+GGG - chr4_1:2798478-2798497 Msa0529320:CDS 45.0%
TGTCTTGCACGCTTCAAAGA+AGG + chr4_1:2798676-2798695 None:intergenic 45.0%
!!! CAAGCACTTTTGGAACGTAC+TGG - chr4_1:2798694-2798713 Msa0529320:CDS 45.0%
AGGTATGCTATGGAGAATCC+TGG - chr4_1:2798823-2798842 Msa0529320:CDS 45.0%
GCCCAAACAATTGAAGGTTG+AGG + chr4_1:2798913-2798932 None:intergenic 45.0%
TATGCCGCTACTAAGAAAGC+CGG - chr4_1:2799012-2799031 Msa0529320:CDS 45.0%
!! TTCACCGGCTTTCTTAGTAG+CGG + chr4_1:2799019-2799038 None:intergenic 45.0%
TGATTCGCCGCCTCAAAAAT+GGG + chr4_1:2799180-2799199 None:intergenic 45.0%
ATGATTCGCCGCCTCAAAAA+TGG + chr4_1:2799181-2799200 None:intergenic 45.0%
!!! ATTTTTGAGGCGGCGAATCA+TGG - chr4_1:2799180-2799199 Msa0529320:CDS 45.0%
!! GATATTGTGAGGGGGTGTTT+AGG - chr4_1:2799234-2799253 Msa0529320:CDS 45.0%
! GATACTGCTGAGAAGAGTAC+TGG - chr4_1:2799264-2799283 Msa0529320:CDS 45.0%
!! AGAAGAGTACTGGAAGTGGT+GGG - chr4_1:2799274-2799293 Msa0529320:CDS 45.0%
TTGAAAACCCTCAACTGTGC+CGG + chr4_1:2799312-2799331 None:intergenic 45.0%
TATGAAGTTGCCGAGGAATG+GGG - chr4_1:2799416-2799435 Msa0529320:CDS 45.0%
GCTTGGTTATAAACCGGTGA+CGG - chr4_1:2799482-2799501 Msa0529320:CDS 45.0%
CTTACTTCAACCGTGTACGG+TGG - chr4_1:2798338-2798357 Msa0529320:CDS 50.0%
CTCCAAAGACAAAGCTTCGC+CGG + chr4_1:2798373-2798392 None:intergenic 50.0%
ACGGACACGTTTCTCCCAAA+CGG + chr4_1:2798509-2798528 None:intergenic 50.0%
GGATTCTCCGTTCTTGTGAC+CGG - chr4_1:2798556-2798575 Msa0529320:CDS 50.0%
! GCGTGCAAGACAAGCACTTT+TGG - chr4_1:2798684-2798703 Msa0529320:CDS 50.0%
ATGCATTTGGCTGCTCAAGC+TGG - chr4_1:2798796-2798815 Msa0529320:CDS 50.0%
AGCTGGTGTGAGGTATGCTA+TGG - chr4_1:2798813-2798832 Msa0529320:CDS 50.0%
GTAGCGGCATACAAACTAGC+AGG + chr4_1:2799003-2799022 None:intergenic 50.0%
CTGTTTATGGTCCTTGGGGT+AGG - chr4_1:2799100-2799119 Msa0529320:CDS 50.0%
GAATCATGGTACCGTTGCGA+GGG - chr4_1:2799194-2799213 Msa0529320:CDS 50.0%
!! GCTGAGAAGAGTACTGGAAG+TGG - chr4_1:2799270-2799289 Msa0529320:CDS 50.0%
!! GAGAAGAGTACTGGAAGTGG+TGG - chr4_1:2799273-2799292 Msa0529320:CDS 50.0%
! TGGAAGTGGTGGGAAGAAGA+GGG - chr4_1:2799284-2799303 Msa0529320:CDS 50.0%
ATCACTAACAGGAACAGGCG+AGG + chr4_1:2799346-2799365 None:intergenic 50.0%
GGAGAGGCTGTTGAAGACTA+AGG - chr4_1:2799380-2799399 Msa0529320:CDS 50.0%
AACTGCACATCCCCATTCCT+CGG + chr4_1:2799429-2799448 None:intergenic 50.0%
AGTTATGCGCAGAGAGAGCT+TGG - chr4_1:2799465-2799484 Msa0529320:CDS 50.0%
CTTACTTCAACCGTGTACGG+TGG - chr4_1:2798338-2798357 Msa0529320:CDS 50.0%
CTCCAAAGACAAAGCTTCGC+CGG + chr4_1:2798373-2798392 None:intergenic 50.0%
ACGGACACGTTTCTCCCAAA+CGG + chr4_1:2798509-2798528 None:intergenic 50.0%
GGATTCTCCGTTCTTGTGAC+CGG - chr4_1:2798556-2798575 Msa0529320:CDS 50.0%
! GCGTGCAAGACAAGCACTTT+TGG - chr4_1:2798684-2798703 Msa0529320:CDS 50.0%
ATGCATTTGGCTGCTCAAGC+TGG - chr4_1:2798796-2798815 Msa0529320:CDS 50.0%
AGCTGGTGTGAGGTATGCTA+TGG - chr4_1:2798813-2798832 Msa0529320:CDS 50.0%
GTAGCGGCATACAAACTAGC+AGG + chr4_1:2799003-2799022 None:intergenic 50.0%
CTGTTTATGGTCCTTGGGGT+AGG - chr4_1:2799100-2799119 Msa0529320:CDS 50.0%
GAATCATGGTACCGTTGCGA+GGG - chr4_1:2799194-2799213 Msa0529320:CDS 50.0%
!! GCTGAGAAGAGTACTGGAAG+TGG - chr4_1:2799270-2799289 Msa0529320:CDS 50.0%
!! GAGAAGAGTACTGGAAGTGG+TGG - chr4_1:2799273-2799292 Msa0529320:CDS 50.0%
! TGGAAGTGGTGGGAAGAAGA+GGG - chr4_1:2799284-2799303 Msa0529320:CDS 50.0%
ATCACTAACAGGAACAGGCG+AGG + chr4_1:2799346-2799365 None:intergenic 50.0%
GGAGAGGCTGTTGAAGACTA+AGG - chr4_1:2799380-2799399 Msa0529320:CDS 50.0%
AACTGCACATCCCCATTCCT+CGG + chr4_1:2799429-2799448 None:intergenic 50.0%
AGTTATGCGCAGAGAGAGCT+TGG - chr4_1:2799465-2799484 Msa0529320:CDS 50.0%
! TTGAACTTTCCCGGCGTCGA+CGG + chr4_1:2798304-2798323 None:intergenic 55.0%
GACGCCGGGAAAGTTCAAGA+TGG - chr4_1:2798306-2798325 Msa0529320:CDS 55.0%
! CTCCGGCGAAGCTTTGTCTT+TGG - chr4_1:2798368-2798387 Msa0529320:CDS 55.0%
ATCCTTCACGGCGGTCATTG+AGG - chr4_1:2798461-2798480 Msa0529320:CDS 55.0%
AGGAGTCCTTCAAACTGGGG+TGG - chr4_1:2798481-2798500 Msa0529320:CDS 55.0%
AAACTGGGGTGGTCCCGTTT+GGG - chr4_1:2798492-2798511 Msa0529320:CDS 55.0%
CGGACACGTTTCTCCCAAAC+GGG + chr4_1:2798508-2798527 None:intergenic 55.0%
AGCAGCTCCGGTCACAAGAA+CGG + chr4_1:2798566-2798585 None:intergenic 55.0%
TCCCTAAAACACCGTCTCCG+CGG + chr4_1:2798627-2798646 None:intergenic 55.0%
TCCTTGGGGTAGGCCTGATA+TGG - chr4_1:2799110-2799129 Msa0529320:CDS 55.0%
CGAATCATGGTACCGTTGCG+AGG - chr4_1:2799193-2799212 Msa0529320:CDS 55.0%
!! GAGGGGGTGTTTAGGTGCTT+TGG - chr4_1:2799242-2799261 Msa0529320:CDS 55.0%
! CTGGAAGTGGTGGGAAGAAG+AGG - chr4_1:2799283-2799302 Msa0529320:CDS 55.0%
! GGAAGTGGTGGGAAGAAGAG+GGG - chr4_1:2799285-2799304 Msa0529320:CDS 55.0%
! GAAGTGGTGGGAAGAAGAGG+GGG - chr4_1:2799286-2799305 Msa0529320:CDS 55.0%
!! TAAACCGGTGACGGATCTGC+AGG - chr4_1:2799491-2799510 Msa0529320:CDS 55.0%
! TTGAACTTTCCCGGCGTCGA+CGG + chr4_1:2798304-2798323 None:intergenic 55.0%
GACGCCGGGAAAGTTCAAGA+TGG - chr4_1:2798306-2798325 Msa0529320:CDS 55.0%
! CTCCGGCGAAGCTTTGTCTT+TGG - chr4_1:2798368-2798387 Msa0529320:CDS 55.0%
ATCCTTCACGGCGGTCATTG+AGG - chr4_1:2798461-2798480 Msa0529320:CDS 55.0%
AGGAGTCCTTCAAACTGGGG+TGG - chr4_1:2798481-2798500 Msa0529320:CDS 55.0%
AAACTGGGGTGGTCCCGTTT+GGG - chr4_1:2798492-2798511 Msa0529320:CDS 55.0%
CGGACACGTTTCTCCCAAAC+GGG + chr4_1:2798508-2798527 None:intergenic 55.0%
AGCAGCTCCGGTCACAAGAA+CGG + chr4_1:2798566-2798585 None:intergenic 55.0%
TCCCTAAAACACCGTCTCCG+CGG + chr4_1:2798627-2798646 None:intergenic 55.0%
TCCTTGGGGTAGGCCTGATA+TGG - chr4_1:2799110-2799129 Msa0529320:CDS 55.0%
CGAATCATGGTACCGTTGCG+AGG - chr4_1:2799193-2799212 Msa0529320:CDS 55.0%
!! GAGGGGGTGTTTAGGTGCTT+TGG - chr4_1:2799242-2799261 Msa0529320:CDS 55.0%
! CTGGAAGTGGTGGGAAGAAG+AGG - chr4_1:2799283-2799302 Msa0529320:CDS 55.0%
! GGAAGTGGTGGGAAGAAGAG+GGG - chr4_1:2799285-2799304 Msa0529320:CDS 55.0%
! GAAGTGGTGGGAAGAAGAGG+GGG - chr4_1:2799286-2799305 Msa0529320:CDS 55.0%
!! TAAACCGGTGACGGATCTGC+AGG - chr4_1:2799491-2799510 Msa0529320:CDS 55.0%
TAACAGTGCTCCGTCGACGC+CGG - chr4_1:2798291-2798310 Msa0529320:CDS 60.0%
! GAGAAGCGTGCCACCGTACA+CGG + chr4_1:2798351-2798370 None:intergenic 60.0%
TGTACGGTGGCACGCTTCTC+CGG - chr4_1:2798351-2798370 Msa0529320:CDS 60.0%
GAGGAGAAGTCGCCGGAGAA+CGG + chr4_1:2798432-2798451 None:intergenic 60.0%
TCCGGCGACTTCTCCTCTTC+CGG - chr4_1:2798435-2798454 Msa0529320:CDS 60.0%
CTCTTCCGGCGGATCCTTCA+CGG - chr4_1:2798449-2798468 Msa0529320:CDS 60.0%
CTCCTCAATGACCGCCGTGA+AGG + chr4_1:2798466-2798485 None:intergenic 60.0%
ACGGGACCACCCCAGTTTGA+AGG + chr4_1:2798490-2798509 None:intergenic 60.0%
CAAACTGGGGTGGTCCCGTT+TGG - chr4_1:2798491-2798510 Msa0529320:CDS 60.0%
TCCGTTCCTCCGCTAGAGTC+CGG - chr4_1:2798524-2798543 Msa0529320:CDS 60.0%
ACCGGACTCTAGCGGAGGAA+CGG + chr4_1:2798528-2798547 None:intergenic 60.0%
GTTCCGTGACCGGACTCTAG+CGG + chr4_1:2798536-2798555 None:intergenic 60.0%
GCTAGAGTCCGGTCACGGAA+CGG - chr4_1:2798535-2798554 Msa0529320:CDS 60.0%
CGGAGAATCCGTTCCGTGAC+CGG + chr4_1:2798546-2798565 None:intergenic 60.0%
GTTCTTGTGACCGGAGCTGC+TGG - chr4_1:2798565-2798584 Msa0529320:CDS 60.0%
!! ACCGGAGCTGCTGGTTTCGT+CGG - chr4_1:2798574-2798593 Msa0529320:CDS 60.0%
TCCGACGAAACCAGCAGCTC+CGG + chr4_1:2798578-2798597 None:intergenic 60.0%
CGTCGGAACACATGTCTCCG+CGG - chr4_1:2798591-2798610 Msa0529320:CDS 60.0%
! GCCGCGGAGACGGTGTTTTA+GGG - chr4_1:2798623-2798642 Msa0529320:CDS 60.0%
TGGCTGCTCAAGCTGGTGTG+AGG - chr4_1:2798803-2798822 Msa0529320:CDS 60.0%
GCCATATCAGGCCTACCCCA+AGG + chr4_1:2799114-2799133 None:intergenic 60.0%
TAACAGTGCTCCGTCGACGC+CGG - chr4_1:2798291-2798310 Msa0529320:CDS 60.0%
! GAGAAGCGTGCCACCGTACA+CGG + chr4_1:2798351-2798370 None:intergenic 60.0%
TGTACGGTGGCACGCTTCTC+CGG - chr4_1:2798351-2798370 Msa0529320:CDS 60.0%
GAGGAGAAGTCGCCGGAGAA+CGG + chr4_1:2798432-2798451 None:intergenic 60.0%
TCCGGCGACTTCTCCTCTTC+CGG - chr4_1:2798435-2798454 Msa0529320:CDS 60.0%
CTCTTCCGGCGGATCCTTCA+CGG - chr4_1:2798449-2798468 Msa0529320:CDS 60.0%
CTCCTCAATGACCGCCGTGA+AGG + chr4_1:2798466-2798485 None:intergenic 60.0%
ACGGGACCACCCCAGTTTGA+AGG + chr4_1:2798490-2798509 None:intergenic 60.0%
CAAACTGGGGTGGTCCCGTT+TGG - chr4_1:2798491-2798510 Msa0529320:CDS 60.0%
TCCGTTCCTCCGCTAGAGTC+CGG - chr4_1:2798524-2798543 Msa0529320:CDS 60.0%
ACCGGACTCTAGCGGAGGAA+CGG + chr4_1:2798528-2798547 None:intergenic 60.0%
GTTCCGTGACCGGACTCTAG+CGG + chr4_1:2798536-2798555 None:intergenic 60.0%
GCTAGAGTCCGGTCACGGAA+CGG - chr4_1:2798535-2798554 Msa0529320:CDS 60.0%
CGGAGAATCCGTTCCGTGAC+CGG + chr4_1:2798546-2798565 None:intergenic 60.0%
GTTCTTGTGACCGGAGCTGC+TGG - chr4_1:2798565-2798584 Msa0529320:CDS 60.0%
!! ACCGGAGCTGCTGGTTTCGT+CGG - chr4_1:2798574-2798593 Msa0529320:CDS 60.0%
TCCGACGAAACCAGCAGCTC+CGG + chr4_1:2798578-2798597 None:intergenic 60.0%
CGTCGGAACACATGTCTCCG+CGG - chr4_1:2798591-2798610 Msa0529320:CDS 60.0%
! GCCGCGGAGACGGTGTTTTA+GGG - chr4_1:2798623-2798642 Msa0529320:CDS 60.0%
TGGCTGCTCAAGCTGGTGTG+AGG - chr4_1:2798803-2798822 Msa0529320:CDS 60.0%
GCCATATCAGGCCTACCCCA+AGG + chr4_1:2799114-2799133 None:intergenic 60.0%
AACAGTGCTCCGTCGACGCC+GGG - chr4_1:2798292-2798311 Msa0529320:CDS 65.0%
GCCGGAAGAGGAGAAGTCGC+CGG + chr4_1:2798439-2798458 None:intergenic 65.0%
GGCGACTTCTCCTCTTCCGG+CGG - chr4_1:2798438-2798457 Msa0529320:CDS 65.0%
CGTGAAGGATCCGCCGGAAG+AGG + chr4_1:2798451-2798470 None:intergenic 65.0%
TTCCGGCGGATCCTTCACGG+CGG - chr4_1:2798452-2798471 Msa0529320:CDS 65.0%
CCTCCGCTAGAGTCCGGTCA+CGG - chr4_1:2798530-2798549 Msa0529320:CDS 65.0%
GCGCTTAAACGCCGCGGAGA+CGG - chr4_1:2798613-2798632 Msa0529320:CDS 65.0%
! CGCCGCGGAGACGGTGTTTT+AGG - chr4_1:2798622-2798641 Msa0529320:CDS 65.0%
TGGTGGGAAGAAGAGGGGGC+CGG - chr4_1:2799290-2799309 Msa0529320:CDS 65.0%
CCAGCCTGCAGATCCGTCAC+CGG + chr4_1:2799498-2799517 None:intergenic 65.0%
AACAGTGCTCCGTCGACGCC+GGG - chr4_1:2798292-2798311 Msa0529320:CDS 65.0%
GCCGGAAGAGGAGAAGTCGC+CGG + chr4_1:2798439-2798458 None:intergenic 65.0%
GGCGACTTCTCCTCTTCCGG+CGG - chr4_1:2798438-2798457 Msa0529320:CDS 65.0%
CGTGAAGGATCCGCCGGAAG+AGG + chr4_1:2798451-2798470 None:intergenic 65.0%
TTCCGGCGGATCCTTCACGG+CGG - chr4_1:2798452-2798471 Msa0529320:CDS 65.0%
CCTCCGCTAGAGTCCGGTCA+CGG - chr4_1:2798530-2798549 Msa0529320:CDS 65.0%
GCGCTTAAACGCCGCGGAGA+CGG - chr4_1:2798613-2798632 Msa0529320:CDS 65.0%
! CGCCGCGGAGACGGTGTTTT+AGG - chr4_1:2798622-2798641 Msa0529320:CDS 65.0%
TGGTGGGAAGAAGAGGGGGC+CGG - chr4_1:2799290-2799309 Msa0529320:CDS 65.0%
CCAGCCTGCAGATCCGTCAC+CGG + chr4_1:2799498-2799517 None:intergenic 65.0%
GACCGCCGTGAAGGATCCGC+CGG + chr4_1:2798457-2798476 None:intergenic 70.0%
CCGTGACCGGACTCTAGCGG+AGG + chr4_1:2798533-2798552 None:intergenic 70.0%
TCCGCGGCGCTTAAACGCCG+CGG - chr4_1:2798607-2798626 Msa0529320:CDS 70.0%
! TCCGCGGCGTTTAAGCGCCG+CGG + chr4_1:2798611-2798630 None:intergenic 70.0%
AGAGGGGGCCGGCACAGTTG+AGG - chr4_1:2799301-2799320 Msa0529320:CDS 70.0%
GAGGGGGCCGGCACAGTTGA+GGG - chr4_1:2799302-2799321 Msa0529320:CDS 70.0%
!! CCGGTGACGGATCTGCAGGC+TGG - chr4_1:2799495-2799514 Msa0529320:CDS 70.0%
GACCGCCGTGAAGGATCCGC+CGG + chr4_1:2798457-2798476 None:intergenic 70.0%
CCGTGACCGGACTCTAGCGG+AGG + chr4_1:2798533-2798552 None:intergenic 70.0%
TCCGCGGCGCTTAAACGCCG+CGG - chr4_1:2798607-2798626 Msa0529320:CDS 70.0%
! TCCGCGGCGTTTAAGCGCCG+CGG + chr4_1:2798611-2798630 None:intergenic 70.0%
AGAGGGGGCCGGCACAGTTG+AGG - chr4_1:2799301-2799320 Msa0529320:CDS 70.0%
GAGGGGGCCGGCACAGTTGA+GGG - chr4_1:2799302-2799321 Msa0529320:CDS 70.0%
!! CCGGTGACGGATCTGCAGGC+TGG - chr4_1:2799495-2799514 Msa0529320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 2798259 2799581 2798259 ID=Msa0529320;Name=Msa0529320
chr4_1 mRNA 2798259 2799581 2798259 ID=Msa0529320-mRNA-1;Parent=Msa0529320;Name=Msa0529320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|440
chr4_1 exon 2798259 2799581 2798259 ID=Msa0529320-mRNA-1:exon:788;Parent=Msa0529320-mRNA-1
chr4_1 CDS 2798259 2799581 2798259 ID=Msa0529320-mRNA-1:cds;Parent=Msa0529320-mRNA-1
Gene Sequence

>Msa0529320

ATGTCTCAGCTGAAGCAAATGTCGCACGCTGATAACAGTGCTCCGTCGACGCCGGGAAAGTTCAAGATGGAGAAAGCTTCTTACTTCAACCGTGTACGGTGGCACGCTTCTCCGGCGAAGCTTTGTCTTTGGAGTTTTGTTTTCTCAGCTGCGATCTTGATCTTCTTTTTCCGTTCTCCGGCGACTTCTCCTCTTCCGGCGGATCCTTCACGGCGGTCATTGAGGAGTCCTTCAAACTGGGGTGGTCCCGTTTGGGAGAAACGTGTCCGTTCCTCCGCTAGAGTCCGGTCACGGAACGGATTCTCCGTTCTTGTGACCGGAGCTGCTGGTTTCGTCGGAACACATGTCTCCGCGGCGCTTAAACGCCGCGGAGACGGTGTTTTAGGGATTGATAATTTCAATGACTATTATGATCCTTCTTTGAAGCGTGCAAGACAAGCACTTTTGGAACGTACTGGTGTTTTCATTGTTGAAGGTGATATCAATGATGCTGCTTTGTTAAGGAAGCTTTTTGAGGTTGTTCCTTTTACTCATGTGATGCATTTGGCTGCTCAAGCTGGTGTGAGGTATGCTATGGAGAATCCTGGTTCTTATGTTCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAGGTTTGTAAAAGTGTTAATCCTCAACCTTCAATTGTTTGGGCTAGTTCTAGTTCTGTTTATGGATTGAATACTAAGGTTCCTTTTTCTGAAAGGGATAGAACTGATCAACCTGCTAGTTTGTATGCCGCTACTAAGAAAGCCGGTGAAGAAATCGCACATACTTATAATCATATCTATGGTCTTTCTTTAACTGGTTTGAGGTTTTTCACTGTTTATGGTCCTTGGGGTAGGCCTGATATGGCTTATTTCTTTTTCACTAGAGATATTTTGAAGGGGAAGACTATTCCCATTTTTGAGGCGGCGAATCATGGTACCGTTGCGAGGGATTTTACTTATATTGATGATATTGTGAGGGGGTGTTTAGGTGCTTTGGATACTGCTGAGAAGAGTACTGGAAGTGGTGGGAAGAAGAGGGGGCCGGCACAGTTGAGGGTTTTCAATTTGGGGAATACCTCGCCTGTTCCTGTTAGTGATCTTGTGGGTATTTTGGAGAGGCTGTTGAAGACTAAGGCAAAGAGGAATATTATGAAGTTGCCGAGGAATGGGGATGTGCAGTTTACTCATGCGAATATTAGTTATGCGCAGAGAGAGCTTGGTTATAAACCGGTGACGGATCTGCAGGCTGGTTTGAAGAAATTTGTGAGGTGGTATCTGAATTACTATTCTTCTGGGAAGAAAGCTGTTGAGTGA

Protein sequence

>Msa0529320

MSQLKQMSHADNSAPSTPGKFKMEKASYFNRVRWHASPAKLCLWSFVFSAAILIFFFRSPATSPLPADPSRRSLRSPSNWGGPVWEKRVRSSARVRSRNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQALLERTGVFIVEGDINDAALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKTIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVGILERLLKTKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPVTDLQAGLKKFVRWYLNYYSSGKKAVE*