Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529320 | XP_003605138.1 | 99.773 | 440 | 1 | 0 | 1 | 440 | 1 | 440 | 0.0 | 907 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529320 | sp|O81312|GAE3_ARATH | 86.667 | 435 | 51 | 4 | 4 | 438 | 1 | 428 | 0.0 | 770 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529320 | G7JEN3 | 99.773 | 440 | 1 | 0 | 1 | 440 | 1 | 440 | 0.0 | 907 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004540 | Msa0529320 | 0.816731 | 4.754494e-52 | -8.615850e-47 |
Msa0005000 | Msa0529320 | -0.832679 | 8.239925e-56 | -8.615850e-47 |
Msa0048160 | Msa0529320 | 0.802106 | 6.565995e-49 | -8.615850e-47 |
Msa0053050 | Msa0529320 | -0.808739 | 2.671322e-50 | -8.615850e-47 |
Msa0094010 | Msa0529320 | 0.803975 | 2.697095e-49 | -8.615850e-47 |
Msa0098390 | Msa0529320 | -0.832552 | 8.857721e-56 | -8.615850e-47 |
Msa0130240 | Msa0529320 | 0.803286 | 3.748626e-49 | -8.615850e-47 |
Msa0229940 | Msa0529320 | 0.837065 | 6.477026e-57 | -8.615850e-47 |
Msa0432070 | Msa0529320 | 0.811096 | 8.306084e-51 | -8.615850e-47 |
Msa0239450 | Msa0529320 | 0.805571 | 1.251852e-49 | -8.615850e-47 |
Msa0267870 | Msa0529320 | 0.812924 | 3.318871e-51 | -8.615850e-47 |
Msa0343190 | Msa0529320 | 0.815434 | 9.263392e-52 | -8.615850e-47 |
Msa0505150 | Msa0529320 | 0.803934 | 2.750093e-49 | -8.615850e-47 |
Msa0529320 | Msa0560470 | 0.832111 | 1.139257e-55 | -8.615850e-47 |
Msa0529320 | Msa0639120 | 0.826331 | 2.876976e-54 | -8.615850e-47 |
Msa0529320 | Msa0658480 | 0.803286 | 3.747555e-49 | -8.615850e-47 |
Msa0529320 | Msa0663120 | 0.856288 | 3.561022e-62 | -8.615850e-47 |
Msa0529320 | Msa0747720 | -0.823277 | 1.510187e-53 | -8.615850e-47 |
Msa0529320 | Msa0756930 | 0.801467 | 8.883114e-49 | -8.615850e-47 |
Msa0529320 | Msa0836500 | 0.817369 | 3.418484e-52 | -8.615850e-47 |
Msa0529320 | Msa0993530 | 0.800038 | 1.738451e-48 | -8.615850e-47 |
Msa0529320 | Msa1004420 | 0.802736 | 4.869834e-49 | -8.615850e-47 |
Msa0529320 | Msa1078000 | 0.830254 | 3.256841e-55 | -8.615850e-47 |
Msa0529320 | Msa1169720 | 0.834405 | 3.055643e-56 | -8.615850e-47 |
Msa0529320 | Msa1201830 | 0.801843 | 7.436561e-49 | -8.615850e-47 |
Msa0529320 | Msa1214320 | 0.823916 | 1.070169e-53 | -8.615850e-47 |
Msa0529320 | Msa1261070 | 0.839508 | 1.519621e-57 | -8.615850e-47 |
Msa0529320 | Msa1262960 | 0.803152 | 3.995632e-49 | -8.615850e-47 |
Msa0529320 | Msa1299360 | 0.821730 | 3.456815e-53 | -8.615850e-47 |
Msa0529320 | Msa1302060 | 0.813006 | 3.184982e-51 | -8.615850e-47 |
Msa0529320 | Msa1337730 | 0.805611 | 1.227944e-49 | -8.615850e-47 |
Msa0529320 | Msa1344850 | 0.808172 | 3.529926e-50 | -8.615850e-47 |
Msa0529320 | Msa1398860 | 0.807743 | 4.355496e-50 | -8.615850e-47 |
Msa0529320 | Msa1438450 | 0.802278 | 6.051286e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529320 | MtrunA17_Chr4g0011281 | 99.773 | 440 | 1 | 0 | 1 | 440 | 1 | 440 | 0.0 | 907 |
Msa0529320 | MtrunA17_Chr7g0230291 | 82.629 | 426 | 66 | 3 | 15 | 440 | 4 | 421 | 0.0 | 728 |
Msa0529320 | MtrunA17_Chr4g0056941 | 69.431 | 422 | 125 | 3 | 11 | 432 | 7 | 424 | 0.0 | 603 |
Msa0529320 | MtrunA17_Chr4g0073351 | 67.431 | 436 | 132 | 4 | 8 | 440 | 6 | 434 | 0.0 | 593 |
Msa0529320 | MtrunA17_Chr3g0121661 | 66.047 | 430 | 134 | 3 | 13 | 432 | 3 | 430 | 0.0 | 585 |
Msa0529320 | MtrunA17_Chr5g0398811 | 76.294 | 367 | 85 | 1 | 69 | 433 | 56 | 422 | 0.0 | 581 |
Msa0529320 | MtrunA17_Chr8g0359401 | 27.545 | 334 | 213 | 8 | 102 | 428 | 8 | 319 | 8.54e-22 | 98.2 |
Msa0529320 | MtrunA17_Chr8g0386331 | 28.614 | 332 | 199 | 12 | 103 | 412 | 8 | 323 | 1.11e-21 | 95.9 |
Msa0529320 | MtrunA17_Chr2g0293521 | 26.087 | 345 | 219 | 12 | 103 | 427 | 73 | 401 | 2.03e-20 | 92.8 |
Msa0529320 | MtrunA17_Chr2g0314601 | 26.822 | 343 | 208 | 8 | 102 | 430 | 8 | 321 | 2.19e-20 | 94.0 |
Msa0529320 | MtrunA17_Chr5g0396581 | 26.039 | 361 | 230 | 12 | 91 | 433 | 38 | 379 | 2.59e-20 | 92.4 |
Msa0529320 | MtrunA17_Chr8g0388261 | 27.576 | 330 | 205 | 12 | 102 | 412 | 5 | 319 | 6.06e-20 | 90.9 |
Msa0529320 | MtrunA17_Chr1g0147841 | 25.519 | 337 | 220 | 10 | 102 | 430 | 6 | 319 | 2.43e-19 | 90.9 |
Msa0529320 | MtrunA17_Chr4g0067461 | 25.397 | 441 | 251 | 17 | 8 | 425 | 20 | 405 | 5.01e-19 | 89.0 |
Msa0529320 | MtrunA17_Chr5g0396571 | 26.923 | 338 | 203 | 11 | 99 | 412 | 2 | 319 | 8.21e-19 | 87.4 |
Msa0529320 | MtrunA17_Chr8g0380921 | 25.143 | 350 | 226 | 11 | 103 | 432 | 73 | 406 | 1.05e-17 | 84.7 |
Msa0529320 | MtrunA17_Chr4g0031131 | 24.471 | 331 | 212 | 11 | 98 | 421 | 29 | 328 | 2.23e-17 | 83.2 |
Msa0529320 | MtrunA17_Chr1g0195521 | 24.929 | 353 | 206 | 12 | 98 | 425 | 115 | 433 | 7.00e-17 | 82.4 |
Msa0529320 | MtrunA17_Chr7g0274131 | 25.000 | 336 | 210 | 13 | 103 | 427 | 31 | 335 | 1.90e-15 | 77.8 |
Msa0529320 | MtrunA17_Chr1g0190771 | 24.189 | 339 | 214 | 12 | 101 | 427 | 28 | 335 | 6.17e-15 | 76.3 |
Msa0529320 | MtrunA17_Chr2g0327981 | 24.324 | 333 | 210 | 12 | 98 | 421 | 35 | 334 | 1.27e-14 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0529320 | AT4G00110.1 | 86.667 | 435 | 51 | 4 | 4 | 438 | 1 | 428 | 0.0 | 770 |
Msa0529320 | AT1G02000.1 | 84.828 | 435 | 59 | 5 | 7 | 439 | 1 | 430 | 0.0 | 751 |
Msa0529320 | AT2G45310.1 | 78.851 | 435 | 88 | 3 | 7 | 438 | 1 | 434 | 0.0 | 693 |
Msa0529320 | AT4G12250.1 | 73.059 | 438 | 105 | 4 | 7 | 437 | 1 | 432 | 0.0 | 621 |
Msa0529320 | AT3G23820.1 | 77.557 | 352 | 79 | 0 | 81 | 432 | 92 | 443 | 0.0 | 582 |
Msa0529320 | AT4G30440.1 | 67.907 | 430 | 126 | 4 | 11 | 438 | 6 | 425 | 0.0 | 564 |
Msa0529320 | AT4G23920.1 | 27.350 | 351 | 215 | 12 | 102 | 430 | 4 | 336 | 4.24e-23 | 100 |
Msa0529320 | AT1G12780.1 | 28.657 | 335 | 197 | 13 | 102 | 412 | 8 | 324 | 1.11e-22 | 99.0 |
Msa0529320 | AT1G63180.1 | 28.443 | 334 | 199 | 12 | 102 | 412 | 8 | 324 | 5.13e-21 | 94.4 |
Msa0529320 | AT1G78570.1 | 26.647 | 334 | 216 | 8 | 102 | 428 | 8 | 319 | 8.91e-21 | 95.5 |
Msa0529320 | AT3G14790.2 | 26.647 | 334 | 216 | 8 | 102 | 428 | 11 | 322 | 2.30e-20 | 94.4 |
Msa0529320 | AT3G14790.1 | 26.647 | 334 | 216 | 8 | 102 | 428 | 8 | 319 | 2.57e-20 | 94.4 |
Msa0529320 | AT4G10960.1 | 26.891 | 357 | 209 | 13 | 102 | 430 | 5 | 337 | 7.81e-20 | 90.9 |
Msa0529320 | AT1G30620.3 | 25.507 | 345 | 221 | 11 | 103 | 427 | 72 | 400 | 4.14e-19 | 89.4 |
Msa0529320 | AT1G30620.1 | 25.507 | 345 | 221 | 11 | 103 | 427 | 73 | 401 | 4.53e-19 | 89.4 |
Msa0529320 | AT1G30620.6 | 25.507 | 345 | 221 | 11 | 103 | 427 | 73 | 401 | 4.53e-19 | 89.4 |
Msa0529320 | AT1G30620.4 | 25.507 | 345 | 221 | 11 | 103 | 427 | 73 | 401 | 4.53e-19 | 89.4 |
Msa0529320 | AT1G30620.2 | 25.507 | 345 | 221 | 11 | 103 | 427 | 73 | 401 | 4.53e-19 | 89.4 |
Msa0529320 | AT1G53500.1 | 26.393 | 341 | 208 | 8 | 102 | 428 | 10 | 321 | 9.18e-19 | 89.4 |
Msa0529320 | AT5G44480.3 | 24.709 | 344 | 225 | 10 | 103 | 427 | 73 | 401 | 1.81e-18 | 87.4 |
Msa0529320 | AT5G44480.4 | 24.709 | 344 | 225 | 10 | 103 | 427 | 73 | 401 | 1.81e-18 | 87.4 |
Msa0529320 | AT5G44480.2 | 24.709 | 344 | 225 | 10 | 103 | 427 | 73 | 401 | 1.81e-18 | 87.4 |
Msa0529320 | AT5G44480.1 | 24.709 | 344 | 225 | 10 | 103 | 427 | 97 | 425 | 2.19e-18 | 87.4 |
Msa0529320 | AT3G62830.2 | 25.507 | 345 | 200 | 12 | 98 | 426 | 116 | 419 | 8.28e-18 | 85.9 |
Msa0529320 | AT3G62830.1 | 25.507 | 345 | 200 | 12 | 98 | 426 | 116 | 419 | 8.28e-18 | 85.9 |
Msa0529320 | AT3G53520.1 | 25.294 | 340 | 215 | 10 | 98 | 430 | 117 | 424 | 1.41e-17 | 85.1 |
Msa0529320 | AT1G64440.1 | 25.281 | 356 | 220 | 12 | 102 | 434 | 4 | 336 | 1.43e-17 | 84.0 |
Msa0529320 | AT2G47650.1 | 24.122 | 427 | 252 | 16 | 32 | 426 | 35 | 421 | 4.01e-17 | 83.6 |
Msa0529320 | AT4G20460.1 | 25.212 | 353 | 227 | 12 | 96 | 427 | 64 | 400 | 4.57e-17 | 83.2 |
Msa0529320 | AT2G28760.1 | 25.225 | 333 | 207 | 13 | 98 | 421 | 28 | 327 | 6.41e-17 | 82.0 |
Msa0529320 | AT2G28760.2 | 25.225 | 333 | 207 | 13 | 98 | 421 | 28 | 327 | 6.41e-17 | 82.0 |
Msa0529320 | AT2G28760.3 | 25.225 | 333 | 207 | 13 | 98 | 421 | 28 | 327 | 6.41e-17 | 82.0 |
Msa0529320 | AT2G28760.4 | 25.225 | 333 | 207 | 13 | 98 | 421 | 59 | 358 | 8.40e-17 | 82.0 |
Msa0529320 | AT1G63180.2 | 28.188 | 298 | 175 | 11 | 102 | 376 | 8 | 289 | 9.35e-17 | 81.3 |
Msa0529320 | AT3G53520.2 | 25.000 | 340 | 214 | 11 | 98 | 430 | 117 | 422 | 1.73e-15 | 78.6 |
Msa0529320 | AT2G47650.2 | 24.249 | 433 | 250 | 18 | 32 | 426 | 35 | 427 | 4.01e-15 | 77.4 |
Msa0529320 | AT5G59290.2 | 24.085 | 328 | 207 | 12 | 103 | 421 | 47 | 341 | 7.62e-15 | 76.3 |
Msa0529320 | AT5G59290.1 | 24.085 | 328 | 207 | 12 | 103 | 421 | 32 | 326 | 8.44e-15 | 75.9 |
Msa0529320 | AT5G59290.4 | 24.085 | 328 | 207 | 12 | 103 | 421 | 3 | 297 | 9.26e-15 | 75.5 |
Msa0529320 | AT5G59290.3 | 24.085 | 328 | 207 | 12 | 103 | 421 | 25 | 319 | 1.04e-14 | 75.5 |
Msa0529320 | AT3G46440.2 | 23.353 | 334 | 214 | 12 | 97 | 421 | 25 | 325 | 1.25e-14 | 75.1 |
Msa0529320 | AT3G46440.1 | 23.353 | 334 | 214 | 12 | 97 | 421 | 25 | 325 | 1.25e-14 | 75.1 |
Msa0529320 | AT3G53520.3 | 27.083 | 240 | 153 | 6 | 98 | 331 | 117 | 340 | 2.61e-14 | 74.3 |
Msa0529320 | AT3G53520.4 | 24.011 | 354 | 225 | 12 | 98 | 430 | 117 | 447 | 3.57e-14 | 74.7 |
Msa0529320 | AT1G30620.5 | 27.128 | 188 | 133 | 3 | 103 | 288 | 73 | 258 | 1.38e-13 | 71.6 |
Find 115 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTAGTTCTAGTTCTGTTTA+TGG | 0.169613 | 4_1:-2798887 | Msa0529320:CDS |
GTTCTATCCCTTTCAGAAAA+AGG | 0.194999 | 4_1:+2798848 | None:intergenic |
ATCTATGGTCTTTCTTTAAC+TGG | 0.228130 | 4_1:-2798755 | Msa0529320:CDS |
ATCCTCAACCTTCAATTGTT+TGG | 0.242672 | 4_1:-2798910 | Msa0529320:CDS |
CTCCGGCGAAGCTTTGTCTT+TGG | 0.247408 | 4_1:-2799450 | Msa0529320:CDS |
TATCTGAATTACTATTCTTC+TGG | 0.256882 | 4_1:-2798278 | Msa0529320:CDS |
TAGTGATCTTGTGGGTATTT+TGG | 0.296077 | 4_1:-2798459 | Msa0529320:CDS |
TTCTCCATCTTGAACTTTCC+CGG | 0.301644 | 4_1:+2799508 | None:intergenic |
TCCTCAACCTTCAATTGTTT+GGG | 0.302294 | 4_1:-2798909 | Msa0529320:CDS |
AAATGCATCACATGAGTAAA+AGG | 0.305224 | 4_1:+2799037 | None:intergenic |
TTTCACTGTTTATGGTCCTT+GGG | 0.318056 | 4_1:-2798723 | Msa0529320:CDS |
TCCTTGGGGTAGGCCTGATA+TGG | 0.329537 | 4_1:-2798708 | Msa0529320:CDS |
CAAACTGGGGTGGTCCCGTT+TGG | 0.334864 | 4_1:-2799327 | Msa0529320:CDS |
GCGTGCAAGACAAGCACTTT+TGG | 0.348677 | 4_1:-2799134 | Msa0529320:CDS |
GTCTTTCTTTAACTGGTTTG+AGG | 0.353381 | 4_1:-2798748 | Msa0529320:CDS |
TATGTTCATAGTAACATTGC+TGG | 0.365279 | 4_1:-2798968 | Msa0529320:CDS |
CATTGAGGAGTCCTTCAAAC+TGG | 0.372195 | 4_1:-2799342 | Msa0529320:CDS |
CATACTTATAATCATATCTA+TGG | 0.393449 | 4_1:-2798770 | Msa0529320:CDS |
AAACTGGGGTGGTCCCGTTT+GGG | 0.395396 | 4_1:-2799326 | Msa0529320:CDS |
TTATGAAGTTGCCGAGGAAT+GGG | 0.400306 | 4_1:-2798403 | Msa0529320:CDS |
ATCTGAATTACTATTCTTCT+GGG | 0.411188 | 4_1:-2798277 | Msa0529320:CDS |
CTGTTTATGGTCCTTGGGGT+AGG | 0.421551 | 4_1:-2798718 | Msa0529320:CDS |
CTCTTCCGGCGGATCCTTCA+CGG | 0.423752 | 4_1:-2799369 | Msa0529320:CDS |
CTGGAAGTGGTGGGAAGAAG+AGG | 0.431142 | 4_1:-2798535 | Msa0529320:CDS |
TCAATGATGCTGCTTTGTTA+AGG | 0.431669 | 4_1:-2799078 | Msa0529320:CDS |
GTTCTTGTGACCGGAGCTGC+TGG | 0.437389 | 4_1:-2799253 | Msa0529320:CDS |
TCCGGCGACTTCTCCTCTTC+CGG | 0.441112 | 4_1:-2799383 | Msa0529320:CDS |
GGAGAGGCTGTTGAAGACTA+AGG | 0.443396 | 4_1:-2798438 | Msa0529320:CDS |
TGTACGGTGGCACGCTTCTC+CGG | 0.452864 | 4_1:-2799467 | Msa0529320:CDS |
GAACTAGCCCAAACAATTGA+AGG | 0.455646 | 4_1:+2798902 | None:intergenic |
TGTCTTGCACGCTTCAAAGA+AGG | 0.457699 | 4_1:+2799145 | None:intergenic |
ATACCCACAAGATCACTAAC+AGG | 0.465851 | 4_1:+2798464 | None:intergenic |
AACAGTGCTCCGTCGACGCC+GGG | 0.468408 | 4_1:-2799526 | Msa0529320:CDS |
ATTATGAAGTTGCCGAGGAA+TGG | 0.468878 | 4_1:-2798404 | Msa0529320:CDS |
TGTTTATGGATTGAATACTA+AGG | 0.472188 | 4_1:-2798873 | Msa0529320:CDS |
ATGCATTTGGCTGCTCAAGC+TGG | 0.474694 | 4_1:-2799022 | Msa0529320:CDS |
ACAAGATCACTAACAGGAAC+AGG | 0.475033 | 4_1:+2798470 | None:intergenic |
TCCGACGAAACCAGCAGCTC+CGG | 0.477531 | 4_1:+2799243 | None:intergenic |
GCGCTTAAACGCCGCGGAGA+CGG | 0.482259 | 4_1:-2799205 | Msa0529320:CDS |
GTTCCTGTTAGTGATCTTGT+GGG | 0.482574 | 4_1:-2798467 | Msa0529320:CDS |
CGGAGAATCCGTTCCGTGAC+CGG | 0.489325 | 4_1:+2799275 | None:intergenic |
TCCGTTCCTCCGCTAGAGTC+CGG | 0.497044 | 4_1:-2799294 | Msa0529320:CDS |
CTCCAAAGACAAAGCTTCGC+CGG | 0.498173 | 4_1:+2799448 | None:intergenic |
AGTTATGCGCAGAGAGAGCT+TGG | 0.500038 | 4_1:-2798353 | Msa0529320:CDS |
CGGACACGTTTCTCCCAAAC+GGG | 0.500537 | 4_1:+2799313 | None:intergenic |
GATACTGCTGAGAAGAGTAC+TGG | 0.501421 | 4_1:-2798554 | Msa0529320:CDS |
CTTCTTACTTCAACCGTGTA+CGG | 0.502910 | 4_1:-2799483 | Msa0529320:CDS |
ACGGGACCACCCCAGTTTGA+AGG | 0.504384 | 4_1:+2799331 | None:intergenic |
GAGAGAGCTTGGTTATAAAC+CGG | 0.506070 | 4_1:-2798342 | Msa0529320:CDS |
CGTGAAGGATCCGCCGGAAG+AGG | 0.507828 | 4_1:+2799370 | None:intergenic |
GGATTCTCCGTTCTTGTGAC+CGG | 0.510300 | 4_1:-2799262 | Msa0529320:CDS |
AGTATGTGCGATTTCTTCAC+CGG | 0.510777 | 4_1:+2798787 | None:intergenic |
TAAACCGGTGACGGATCTGC+AGG | 0.513367 | 4_1:-2798327 | Msa0529320:CDS |
TGTTCCTGTTAGTGATCTTG+TGG | 0.519953 | 4_1:-2798468 | Msa0529320:CDS |
ACGGACACGTTTCTCCCAAA+CGG | 0.521018 | 4_1:+2799312 | None:intergenic |
GCCCAAACAATTGAAGGTTG+AGG | 0.535698 | 4_1:+2798908 | None:intergenic |
ACCGGAGCTGCTGGTTTCGT+CGG | 0.536422 | 4_1:-2799244 | Msa0529320:CDS |
TGGAAGTGGTGGGAAGAAGA+GGG | 0.543352 | 4_1:-2798534 | Msa0529320:CDS |
TTCACTGTTTATGGTCCTTG+GGG | 0.546844 | 4_1:-2798722 | Msa0529320:CDS |
TTGAAAACCCTCAACTGTGC+CGG | 0.546878 | 4_1:+2798509 | None:intergenic |
ATTGAGGAGTCCTTCAAACT+GGG | 0.549385 | 4_1:-2799341 | Msa0529320:CDS |
TTATATTGATGATATTGTGA+GGG | 0.550359 | 4_1:-2798594 | Msa0529320:CDS |
GAGGAGAAGTCGCCGGAGAA+CGG | 0.554120 | 4_1:+2799389 | None:intergenic |
ATCCTTCACGGCGGTCATTG+AGG | 0.554298 | 4_1:-2799357 | Msa0529320:CDS |
AACTGCACATCCCCATTCCT+CGG | 0.554769 | 4_1:+2798392 | None:intergenic |
TAACAGTGCTCCGTCGACGC+CGG | 0.562127 | 4_1:-2799527 | Msa0529320:CDS |
GTAGCGGCATACAAACTAGC+AGG | 0.564565 | 4_1:+2798818 | None:intergenic |
TTGAACTTTCCCGGCGTCGA+CGG | 0.565515 | 4_1:+2799517 | None:intergenic |
TTCACCGGCTTTCTTAGTAG+CGG | 0.567698 | 4_1:+2798802 | None:intergenic |
GAGAAGCGTGCCACCGTACA+CGG | 0.567964 | 4_1:+2799470 | None:intergenic |
AGCAGCTCCGGTCACAAGAA+CGG | 0.569637 | 4_1:+2799255 | None:intergenic |
CTCCTCAATGACCGCCGTGA+AGG | 0.571394 | 4_1:+2799355 | None:intergenic |
GACCGCCGTGAAGGATCCGC+CGG | 0.572692 | 4_1:+2799364 | None:intergenic |
CCGGTGACGGATCTGCAGGC+TGG | 0.573224 | 4_1:-2798323 | Msa0529320:CDS |
ACCGGACTCTAGCGGAGGAA+CGG | 0.574251 | 4_1:+2799293 | None:intergenic |
CTTATATTGATGATATTGTG+AGG | 0.578974 | 4_1:-2798595 | Msa0529320:CDS |
GAAGTGGTGGGAAGAAGAGG+GGG | 0.582983 | 4_1:-2798532 | Msa0529320:CDS |
CGAATCATGGTACCGTTGCG+AGG | 0.585042 | 4_1:-2798625 | Msa0529320:CDS |
AGCTGGTGTGAGGTATGCTA+TGG | 0.586552 | 4_1:-2799005 | Msa0529320:CDS |
AGGTATGCTATGGAGAATCC+TGG | 0.586560 | 4_1:-2798995 | Msa0529320:CDS |
CCAGCCTGCAGATCCGTCAC+CGG | 0.597830 | 4_1:+2798323 | None:intergenic |
GGCGACTTCTCCTCTTCCGG+CGG | 0.600873 | 4_1:-2799380 | Msa0529320:CDS |
GGAAGTGGTGGGAAGAAGAG+GGG | 0.607007 | 4_1:-2798533 | Msa0529320:CDS |
CCTCCGCTAGAGTCCGGTCA+CGG | 0.608900 | 4_1:-2799288 | Msa0529320:CDS |
TATGAAGTTGCCGAGGAATG+GGG | 0.609964 | 4_1:-2798402 | Msa0529320:CDS |
GCTAGAGTCCGGTCACGGAA+CGG | 0.610673 | 4_1:-2799283 | Msa0529320:CDS |
GAATCATGGTACCGTTGCGA+GGG | 0.611200 | 4_1:-2798624 | Msa0529320:CDS |
GCCGGAAGAGGAGAAGTCGC+CGG | 0.613076 | 4_1:+2799382 | None:intergenic |
TATGCCGCTACTAAGAAAGC+CGG | 0.617216 | 4_1:-2798806 | Msa0529320:CDS |
GCTTGGTTATAAACCGGTGA+CGG | 0.619019 | 4_1:-2798336 | Msa0529320:CDS |
GAGAAGAGTACTGGAAGTGG+TGG | 0.623154 | 4_1:-2798545 | Msa0529320:CDS |
GTTTGAAGAAATTTGTGAGG+TGG | 0.624134 | 4_1:-2798301 | Msa0529320:CDS |
TGGCTGCTCAAGCTGGTGTG+AGG | 0.625330 | 4_1:-2799015 | Msa0529320:CDS |
GCCATATCAGGCCTACCCCA+AGG | 0.630669 | 4_1:+2798707 | None:intergenic |
GCTGAGAAGAGTACTGGAAG+TGG | 0.633054 | 4_1:-2798548 | Msa0529320:CDS |
GACGCCGGGAAAGTTCAAGA+TGG | 0.634115 | 4_1:-2799512 | Msa0529320:CDS |
TCCGCGGCGCTTAAACGCCG+CGG | 0.635349 | 4_1:-2799211 | Msa0529320:CDS |
TCCGCGGCGTTTAAGCGCCG+CGG | 0.637292 | 4_1:+2799210 | None:intergenic |
CTGGTTTGAAGAAATTTGTG+AGG | 0.647230 | 4_1:-2798304 | Msa0529320:CDS |
AGGAGTCCTTCAAACTGGGG+TGG | 0.647390 | 4_1:-2799337 | Msa0529320:CDS |
ATAAGTAAAATCCCTCGCAA+CGG | 0.649166 | 4_1:+2798613 | None:intergenic |
TGTTGAAGACTAAGGCAAAG+AGG | 0.649703 | 4_1:-2798430 | Msa0529320:CDS |
TCCCTAAAACACCGTCTCCG+CGG | 0.649971 | 4_1:+2799194 | None:intergenic |
AGAAGAGTACTGGAAGTGGT+GGG | 0.649979 | 4_1:-2798544 | Msa0529320:CDS |
GTTCCGTGACCGGACTCTAG+CGG | 0.650330 | 4_1:+2799285 | None:intergenic |
GGAATATTATGAAGTTGCCG+AGG | 0.656687 | 4_1:-2798409 | Msa0529320:CDS |
CTTACTTCAACCGTGTACGG+TGG | 0.659507 | 4_1:-2799480 | Msa0529320:CDS |
CCGTGACCGGACTCTAGCGG+AGG | 0.659987 | 4_1:+2799288 | None:intergenic |
TATATTGATGATATTGTGAG+GGG | 0.666488 | 4_1:-2798593 | Msa0529320:CDS |
ATCACTAACAGGAACAGGCG+AGG | 0.666779 | 4_1:+2798475 | None:intergenic |
TTACTATGAACATAAGAACC+AGG | 0.683714 | 4_1:+2798977 | None:intergenic |
TTGAGGAGTCCTTCAAACTG+GGG | 0.690015 | 4_1:-2799340 | Msa0529320:CDS |
CGTCGGAACACATGTCTCCG+CGG | 0.690793 | 4_1:-2799227 | Msa0529320:CDS |
ATATTGATGATATTGTGAGG+GGG | 0.741076 | 4_1:-2798592 | Msa0529320:CDS |
TTCCGGCGGATCCTTCACGG+CGG | 0.781786 | 4_1:-2799366 | Msa0529320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATACTTATAATCATATCTA+TGG | - | chr4_1:2799048-2799067 | Msa0529320:CDS | 20.0% |
!!! | TTATATTGATGATATTGTGA+GGG | - | chr4_1:2799224-2799243 | Msa0529320:CDS | 20.0% |
!! | CATACTTATAATCATATCTA+TGG | - | chr4_1:2799048-2799067 | Msa0529320:CDS | 20.0% |
!!! | TTATATTGATGATATTGTGA+GGG | - | chr4_1:2799224-2799243 | Msa0529320:CDS | 20.0% |
!! | TGTTTATGGATTGAATACTA+AGG | - | chr4_1:2798945-2798964 | Msa0529320:CDS | 25.0% |
! | AAAAAGAAATAAGCCATATC+AGG | + | chr4_1:2799126-2799145 | None:intergenic | 25.0% |
!!! | TTTCACTAGAGATATTTTGA+AGG | - | chr4_1:2799143-2799162 | Msa0529320:CDS | 25.0% |
!!! | TTCACTAGAGATATTTTGAA+GGG | - | chr4_1:2799144-2799163 | Msa0529320:CDS | 25.0% |
!! | CTTATATTGATGATATTGTG+AGG | - | chr4_1:2799223-2799242 | Msa0529320:CDS | 25.0% |
!! | TATATTGATGATATTGTGAG+GGG | - | chr4_1:2799225-2799244 | Msa0529320:CDS | 25.0% |
! | TATCTGAATTACTATTCTTC+TGG | - | chr4_1:2799540-2799559 | Msa0529320:CDS | 25.0% |
! | ATCTGAATTACTATTCTTCT+GGG | - | chr4_1:2799541-2799560 | Msa0529320:CDS | 25.0% |
!! | TGTTTATGGATTGAATACTA+AGG | - | chr4_1:2798945-2798964 | Msa0529320:CDS | 25.0% |
! | AAAAAGAAATAAGCCATATC+AGG | + | chr4_1:2799126-2799145 | None:intergenic | 25.0% |
!!! | TTTCACTAGAGATATTTTGA+AGG | - | chr4_1:2799143-2799162 | Msa0529320:CDS | 25.0% |
!!! | TTCACTAGAGATATTTTGAA+GGG | - | chr4_1:2799144-2799163 | Msa0529320:CDS | 25.0% |
!! | CTTATATTGATGATATTGTG+AGG | - | chr4_1:2799223-2799242 | Msa0529320:CDS | 25.0% |
!! | TATATTGATGATATTGTGAG+GGG | - | chr4_1:2799225-2799244 | Msa0529320:CDS | 25.0% |
! | TATCTGAATTACTATTCTTC+TGG | - | chr4_1:2799540-2799559 | Msa0529320:CDS | 25.0% |
! | ATCTGAATTACTATTCTTCT+GGG | - | chr4_1:2799541-2799560 | Msa0529320:CDS | 25.0% |
! | TTTGTTAAGGAAGCTTTTTG+AGG | - | chr4_1:2798753-2798772 | Msa0529320:CDS | 30.0% |
AAATGCATCACATGAGTAAA+AGG | + | chr4_1:2798784-2798803 | None:intergenic | 30.0% | |
! | TTTTACTCATGTGATGCATT+TGG | - | chr4_1:2798783-2798802 | Msa0529320:CDS | 30.0% |
TTACTATGAACATAAGAACC+AGG | + | chr4_1:2798844-2798863 | None:intergenic | 30.0% | |
TATGTTCATAGTAACATTGC+TGG | - | chr4_1:2798850-2798869 | Msa0529320:CDS | 30.0% | |
!!! | TGGTTTTGTTAATTTGCTTG+AGG | - | chr4_1:2798870-2798889 | Msa0529320:CDS | 30.0% |
!! | TAAGGTTCCTTTTTCTGAAA+GGG | - | chr4_1:2798963-2798982 | Msa0529320:CDS | 30.0% |
ATCTATGGTCTTTCTTTAAC+TGG | - | chr4_1:2799063-2799082 | Msa0529320:CDS | 30.0% | |
! | TTGAGGTTTTTCACTGTTTA+TGG | - | chr4_1:2799087-2799106 | Msa0529320:CDS | 30.0% |
!! | TCACTAGAGATATTTTGAAG+GGG | - | chr4_1:2799145-2799164 | Msa0529320:CDS | 30.0% |
! | ATATTGATGATATTGTGAGG+GGG | - | chr4_1:2799226-2799245 | Msa0529320:CDS | 30.0% |
! | TTTGTTAAGGAAGCTTTTTG+AGG | - | chr4_1:2798753-2798772 | Msa0529320:CDS | 30.0% |
AAATGCATCACATGAGTAAA+AGG | + | chr4_1:2798784-2798803 | None:intergenic | 30.0% | |
! | TTTTACTCATGTGATGCATT+TGG | - | chr4_1:2798783-2798802 | Msa0529320:CDS | 30.0% |
TTACTATGAACATAAGAACC+AGG | + | chr4_1:2798844-2798863 | None:intergenic | 30.0% | |
TATGTTCATAGTAACATTGC+TGG | - | chr4_1:2798850-2798869 | Msa0529320:CDS | 30.0% | |
!!! | TGGTTTTGTTAATTTGCTTG+AGG | - | chr4_1:2798870-2798889 | Msa0529320:CDS | 30.0% |
!! | TAAGGTTCCTTTTTCTGAAA+GGG | - | chr4_1:2798963-2798982 | Msa0529320:CDS | 30.0% |
ATCTATGGTCTTTCTTTAAC+TGG | - | chr4_1:2799063-2799082 | Msa0529320:CDS | 30.0% | |
! | TTGAGGTTTTTCACTGTTTA+TGG | - | chr4_1:2799087-2799106 | Msa0529320:CDS | 30.0% |
!! | TCACTAGAGATATTTTGAAG+GGG | - | chr4_1:2799145-2799164 | Msa0529320:CDS | 30.0% |
! | ATATTGATGATATTGTGAGG+GGG | - | chr4_1:2799226-2799245 | Msa0529320:CDS | 30.0% |
! | ACTGGTGTTTTCATTGTTGA+AGG | - | chr4_1:2798712-2798731 | Msa0529320:CDS | 35.0% |
!! | TCAATGATGCTGCTTTGTTA+AGG | - | chr4_1:2798740-2798759 | Msa0529320:CDS | 35.0% |
ATCCTCAACCTTCAATTGTT+TGG | - | chr4_1:2798908-2798927 | Msa0529320:CDS | 35.0% | |
TCCTCAACCTTCAATTGTTT+GGG | - | chr4_1:2798909-2798928 | Msa0529320:CDS | 35.0% | |
!! | GCTAGTTCTAGTTCTGTTTA+TGG | - | chr4_1:2798931-2798950 | Msa0529320:CDS | 35.0% |
! | CTAAGGTTCCTTTTTCTGAA+AGG | - | chr4_1:2798962-2798981 | Msa0529320:CDS | 35.0% |
GTTCTATCCCTTTCAGAAAA+AGG | + | chr4_1:2798973-2798992 | None:intergenic | 35.0% | |
!! | GTCTTTCTTTAACTGGTTTG+AGG | - | chr4_1:2799070-2799089 | Msa0529320:CDS | 35.0% |
! | TTTTCACTGTTTATGGTCCT+TGG | - | chr4_1:2799094-2799113 | Msa0529320:CDS | 35.0% |
TTTCACTGTTTATGGTCCTT+GGG | - | chr4_1:2799095-2799114 | Msa0529320:CDS | 35.0% | |
!! | GAAGACTATTCCCATTTTTG+AGG | - | chr4_1:2799167-2799186 | Msa0529320:CDS | 35.0% |
ATAAGTAAAATCCCTCGCAA+CGG | + | chr4_1:2799208-2799227 | None:intergenic | 35.0% | |
! | ACAGTTGAGGGTTTTCAATT+TGG | - | chr4_1:2799314-2799333 | Msa0529320:CDS | 35.0% |
! | CAGTTGAGGGTTTTCAATTT+GGG | - | chr4_1:2799315-2799334 | Msa0529320:CDS | 35.0% |
! | AGTTGAGGGTTTTCAATTTG+GGG | - | chr4_1:2799316-2799335 | Msa0529320:CDS | 35.0% |
! | TAGTGATCTTGTGGGTATTT+TGG | - | chr4_1:2799359-2799378 | Msa0529320:CDS | 35.0% |
! | CTGGTTTGAAGAAATTTGTG+AGG | - | chr4_1:2799514-2799533 | Msa0529320:CDS | 35.0% |
GTTTGAAGAAATTTGTGAGG+TGG | - | chr4_1:2799517-2799536 | Msa0529320:CDS | 35.0% | |
! | ACTGGTGTTTTCATTGTTGA+AGG | - | chr4_1:2798712-2798731 | Msa0529320:CDS | 35.0% |
!! | TCAATGATGCTGCTTTGTTA+AGG | - | chr4_1:2798740-2798759 | Msa0529320:CDS | 35.0% |
ATCCTCAACCTTCAATTGTT+TGG | - | chr4_1:2798908-2798927 | Msa0529320:CDS | 35.0% | |
TCCTCAACCTTCAATTGTTT+GGG | - | chr4_1:2798909-2798928 | Msa0529320:CDS | 35.0% | |
!! | GCTAGTTCTAGTTCTGTTTA+TGG | - | chr4_1:2798931-2798950 | Msa0529320:CDS | 35.0% |
! | CTAAGGTTCCTTTTTCTGAA+AGG | - | chr4_1:2798962-2798981 | Msa0529320:CDS | 35.0% |
GTTCTATCCCTTTCAGAAAA+AGG | + | chr4_1:2798973-2798992 | None:intergenic | 35.0% | |
!! | GTCTTTCTTTAACTGGTTTG+AGG | - | chr4_1:2799070-2799089 | Msa0529320:CDS | 35.0% |
! | TTTTCACTGTTTATGGTCCT+TGG | - | chr4_1:2799094-2799113 | Msa0529320:CDS | 35.0% |
TTTCACTGTTTATGGTCCTT+GGG | - | chr4_1:2799095-2799114 | Msa0529320:CDS | 35.0% | |
!! | GAAGACTATTCCCATTTTTG+AGG | - | chr4_1:2799167-2799186 | Msa0529320:CDS | 35.0% |
ATAAGTAAAATCCCTCGCAA+CGG | + | chr4_1:2799208-2799227 | None:intergenic | 35.0% | |
! | ACAGTTGAGGGTTTTCAATT+TGG | - | chr4_1:2799314-2799333 | Msa0529320:CDS | 35.0% |
! | CAGTTGAGGGTTTTCAATTT+GGG | - | chr4_1:2799315-2799334 | Msa0529320:CDS | 35.0% |
! | AGTTGAGGGTTTTCAATTTG+GGG | - | chr4_1:2799316-2799335 | Msa0529320:CDS | 35.0% |
! | TAGTGATCTTGTGGGTATTT+TGG | - | chr4_1:2799359-2799378 | Msa0529320:CDS | 35.0% |
! | CTGGTTTGAAGAAATTTGTG+AGG | - | chr4_1:2799514-2799533 | Msa0529320:CDS | 35.0% |
GTTTGAAGAAATTTGTGAGG+TGG | - | chr4_1:2799517-2799536 | Msa0529320:CDS | 35.0% | |
TTCTCCATCTTGAACTTTCC+CGG | + | chr4_1:2798313-2798332 | None:intergenic | 40.0% | |
CTTCTTACTTCAACCGTGTA+CGG | - | chr4_1:2798335-2798354 | Msa0529320:CDS | 40.0% | |
! | GATCTTCTTTTTCCGTTCTC+CGG | - | chr4_1:2798417-2798436 | Msa0529320:CDS | 40.0% |
ATTGAGGAGTCCTTCAAACT+GGG | - | chr4_1:2798477-2798496 | Msa0529320:CDS | 40.0% | |
GAACTAGCCCAAACAATTGA+AGG | + | chr4_1:2798919-2798938 | None:intergenic | 40.0% | |
AGTATGTGCGATTTCTTCAC+CGG | + | chr4_1:2799034-2799053 | None:intergenic | 40.0% | |
TTCACTGTTTATGGTCCTTG+GGG | - | chr4_1:2799096-2799115 | Msa0529320:CDS | 40.0% | |
!! | GACTATTCCCATTTTTGAGG+CGG | - | chr4_1:2799170-2799189 | Msa0529320:CDS | 40.0% |
ACAAGATCACTAACAGGAAC+AGG | + | chr4_1:2799351-2799370 | None:intergenic | 40.0% | |
TGTTCCTGTTAGTGATCTTG+TGG | - | chr4_1:2799350-2799369 | Msa0529320:CDS | 40.0% | |
GTTCCTGTTAGTGATCTTGT+GGG | - | chr4_1:2799351-2799370 | Msa0529320:CDS | 40.0% | |
ATACCCACAAGATCACTAAC+AGG | + | chr4_1:2799357-2799376 | None:intergenic | 40.0% | |
!! | ATCTTGTGGGTATTTTGGAG+AGG | - | chr4_1:2799364-2799383 | Msa0529320:CDS | 40.0% |
TGTTGAAGACTAAGGCAAAG+AGG | - | chr4_1:2799388-2799407 | Msa0529320:CDS | 40.0% | |
GGAATATTATGAAGTTGCCG+AGG | - | chr4_1:2799409-2799428 | Msa0529320:CDS | 40.0% | |
ATTATGAAGTTGCCGAGGAA+TGG | - | chr4_1:2799414-2799433 | Msa0529320:CDS | 40.0% | |
TTATGAAGTTGCCGAGGAAT+GGG | - | chr4_1:2799415-2799434 | Msa0529320:CDS | 40.0% | |
GAGAGAGCTTGGTTATAAAC+CGG | - | chr4_1:2799476-2799495 | Msa0529320:CDS | 40.0% | |
TTCTCCATCTTGAACTTTCC+CGG | + | chr4_1:2798313-2798332 | None:intergenic | 40.0% | |
CTTCTTACTTCAACCGTGTA+CGG | - | chr4_1:2798335-2798354 | Msa0529320:CDS | 40.0% | |
! | GATCTTCTTTTTCCGTTCTC+CGG | - | chr4_1:2798417-2798436 | Msa0529320:CDS | 40.0% |
ATTGAGGAGTCCTTCAAACT+GGG | - | chr4_1:2798477-2798496 | Msa0529320:CDS | 40.0% | |
GAACTAGCCCAAACAATTGA+AGG | + | chr4_1:2798919-2798938 | None:intergenic | 40.0% | |
AGTATGTGCGATTTCTTCAC+CGG | + | chr4_1:2799034-2799053 | None:intergenic | 40.0% | |
TTCACTGTTTATGGTCCTTG+GGG | - | chr4_1:2799096-2799115 | Msa0529320:CDS | 40.0% | |
!! | GACTATTCCCATTTTTGAGG+CGG | - | chr4_1:2799170-2799189 | Msa0529320:CDS | 40.0% |
ACAAGATCACTAACAGGAAC+AGG | + | chr4_1:2799351-2799370 | None:intergenic | 40.0% | |
TGTTCCTGTTAGTGATCTTG+TGG | - | chr4_1:2799350-2799369 | Msa0529320:CDS | 40.0% | |
GTTCCTGTTAGTGATCTTGT+GGG | - | chr4_1:2799351-2799370 | Msa0529320:CDS | 40.0% | |
ATACCCACAAGATCACTAAC+AGG | + | chr4_1:2799357-2799376 | None:intergenic | 40.0% | |
!! | ATCTTGTGGGTATTTTGGAG+AGG | - | chr4_1:2799364-2799383 | Msa0529320:CDS | 40.0% |
TGTTGAAGACTAAGGCAAAG+AGG | - | chr4_1:2799388-2799407 | Msa0529320:CDS | 40.0% | |
GGAATATTATGAAGTTGCCG+AGG | - | chr4_1:2799409-2799428 | Msa0529320:CDS | 40.0% | |
ATTATGAAGTTGCCGAGGAA+TGG | - | chr4_1:2799414-2799433 | Msa0529320:CDS | 40.0% | |
TTATGAAGTTGCCGAGGAAT+GGG | - | chr4_1:2799415-2799434 | Msa0529320:CDS | 40.0% | |
GAGAGAGCTTGGTTATAAAC+CGG | - | chr4_1:2799476-2799495 | Msa0529320:CDS | 40.0% | |
CATTGAGGAGTCCTTCAAAC+TGG | - | chr4_1:2798476-2798495 | Msa0529320:CDS | 45.0% | |
TTGAGGAGTCCTTCAAACTG+GGG | - | chr4_1:2798478-2798497 | Msa0529320:CDS | 45.0% | |
TGTCTTGCACGCTTCAAAGA+AGG | + | chr4_1:2798676-2798695 | None:intergenic | 45.0% | |
!!! | CAAGCACTTTTGGAACGTAC+TGG | - | chr4_1:2798694-2798713 | Msa0529320:CDS | 45.0% |
AGGTATGCTATGGAGAATCC+TGG | - | chr4_1:2798823-2798842 | Msa0529320:CDS | 45.0% | |
GCCCAAACAATTGAAGGTTG+AGG | + | chr4_1:2798913-2798932 | None:intergenic | 45.0% | |
TATGCCGCTACTAAGAAAGC+CGG | - | chr4_1:2799012-2799031 | Msa0529320:CDS | 45.0% | |
!! | TTCACCGGCTTTCTTAGTAG+CGG | + | chr4_1:2799019-2799038 | None:intergenic | 45.0% |
TGATTCGCCGCCTCAAAAAT+GGG | + | chr4_1:2799180-2799199 | None:intergenic | 45.0% | |
ATGATTCGCCGCCTCAAAAA+TGG | + | chr4_1:2799181-2799200 | None:intergenic | 45.0% | |
!!! | ATTTTTGAGGCGGCGAATCA+TGG | - | chr4_1:2799180-2799199 | Msa0529320:CDS | 45.0% |
!! | GATATTGTGAGGGGGTGTTT+AGG | - | chr4_1:2799234-2799253 | Msa0529320:CDS | 45.0% |
! | GATACTGCTGAGAAGAGTAC+TGG | - | chr4_1:2799264-2799283 | Msa0529320:CDS | 45.0% |
!! | AGAAGAGTACTGGAAGTGGT+GGG | - | chr4_1:2799274-2799293 | Msa0529320:CDS | 45.0% |
TTGAAAACCCTCAACTGTGC+CGG | + | chr4_1:2799312-2799331 | None:intergenic | 45.0% | |
TATGAAGTTGCCGAGGAATG+GGG | - | chr4_1:2799416-2799435 | Msa0529320:CDS | 45.0% | |
GCTTGGTTATAAACCGGTGA+CGG | - | chr4_1:2799482-2799501 | Msa0529320:CDS | 45.0% | |
CATTGAGGAGTCCTTCAAAC+TGG | - | chr4_1:2798476-2798495 | Msa0529320:CDS | 45.0% | |
TTGAGGAGTCCTTCAAACTG+GGG | - | chr4_1:2798478-2798497 | Msa0529320:CDS | 45.0% | |
TGTCTTGCACGCTTCAAAGA+AGG | + | chr4_1:2798676-2798695 | None:intergenic | 45.0% | |
!!! | CAAGCACTTTTGGAACGTAC+TGG | - | chr4_1:2798694-2798713 | Msa0529320:CDS | 45.0% |
AGGTATGCTATGGAGAATCC+TGG | - | chr4_1:2798823-2798842 | Msa0529320:CDS | 45.0% | |
GCCCAAACAATTGAAGGTTG+AGG | + | chr4_1:2798913-2798932 | None:intergenic | 45.0% | |
TATGCCGCTACTAAGAAAGC+CGG | - | chr4_1:2799012-2799031 | Msa0529320:CDS | 45.0% | |
!! | TTCACCGGCTTTCTTAGTAG+CGG | + | chr4_1:2799019-2799038 | None:intergenic | 45.0% |
TGATTCGCCGCCTCAAAAAT+GGG | + | chr4_1:2799180-2799199 | None:intergenic | 45.0% | |
ATGATTCGCCGCCTCAAAAA+TGG | + | chr4_1:2799181-2799200 | None:intergenic | 45.0% | |
!!! | ATTTTTGAGGCGGCGAATCA+TGG | - | chr4_1:2799180-2799199 | Msa0529320:CDS | 45.0% |
!! | GATATTGTGAGGGGGTGTTT+AGG | - | chr4_1:2799234-2799253 | Msa0529320:CDS | 45.0% |
! | GATACTGCTGAGAAGAGTAC+TGG | - | chr4_1:2799264-2799283 | Msa0529320:CDS | 45.0% |
!! | AGAAGAGTACTGGAAGTGGT+GGG | - | chr4_1:2799274-2799293 | Msa0529320:CDS | 45.0% |
TTGAAAACCCTCAACTGTGC+CGG | + | chr4_1:2799312-2799331 | None:intergenic | 45.0% | |
TATGAAGTTGCCGAGGAATG+GGG | - | chr4_1:2799416-2799435 | Msa0529320:CDS | 45.0% | |
GCTTGGTTATAAACCGGTGA+CGG | - | chr4_1:2799482-2799501 | Msa0529320:CDS | 45.0% | |
CTTACTTCAACCGTGTACGG+TGG | - | chr4_1:2798338-2798357 | Msa0529320:CDS | 50.0% | |
CTCCAAAGACAAAGCTTCGC+CGG | + | chr4_1:2798373-2798392 | None:intergenic | 50.0% | |
ACGGACACGTTTCTCCCAAA+CGG | + | chr4_1:2798509-2798528 | None:intergenic | 50.0% | |
GGATTCTCCGTTCTTGTGAC+CGG | - | chr4_1:2798556-2798575 | Msa0529320:CDS | 50.0% | |
! | GCGTGCAAGACAAGCACTTT+TGG | - | chr4_1:2798684-2798703 | Msa0529320:CDS | 50.0% |
ATGCATTTGGCTGCTCAAGC+TGG | - | chr4_1:2798796-2798815 | Msa0529320:CDS | 50.0% | |
AGCTGGTGTGAGGTATGCTA+TGG | - | chr4_1:2798813-2798832 | Msa0529320:CDS | 50.0% | |
GTAGCGGCATACAAACTAGC+AGG | + | chr4_1:2799003-2799022 | None:intergenic | 50.0% | |
CTGTTTATGGTCCTTGGGGT+AGG | - | chr4_1:2799100-2799119 | Msa0529320:CDS | 50.0% | |
GAATCATGGTACCGTTGCGA+GGG | - | chr4_1:2799194-2799213 | Msa0529320:CDS | 50.0% | |
!! | GCTGAGAAGAGTACTGGAAG+TGG | - | chr4_1:2799270-2799289 | Msa0529320:CDS | 50.0% |
!! | GAGAAGAGTACTGGAAGTGG+TGG | - | chr4_1:2799273-2799292 | Msa0529320:CDS | 50.0% |
! | TGGAAGTGGTGGGAAGAAGA+GGG | - | chr4_1:2799284-2799303 | Msa0529320:CDS | 50.0% |
ATCACTAACAGGAACAGGCG+AGG | + | chr4_1:2799346-2799365 | None:intergenic | 50.0% | |
GGAGAGGCTGTTGAAGACTA+AGG | - | chr4_1:2799380-2799399 | Msa0529320:CDS | 50.0% | |
AACTGCACATCCCCATTCCT+CGG | + | chr4_1:2799429-2799448 | None:intergenic | 50.0% | |
AGTTATGCGCAGAGAGAGCT+TGG | - | chr4_1:2799465-2799484 | Msa0529320:CDS | 50.0% | |
CTTACTTCAACCGTGTACGG+TGG | - | chr4_1:2798338-2798357 | Msa0529320:CDS | 50.0% | |
CTCCAAAGACAAAGCTTCGC+CGG | + | chr4_1:2798373-2798392 | None:intergenic | 50.0% | |
ACGGACACGTTTCTCCCAAA+CGG | + | chr4_1:2798509-2798528 | None:intergenic | 50.0% | |
GGATTCTCCGTTCTTGTGAC+CGG | - | chr4_1:2798556-2798575 | Msa0529320:CDS | 50.0% | |
! | GCGTGCAAGACAAGCACTTT+TGG | - | chr4_1:2798684-2798703 | Msa0529320:CDS | 50.0% |
ATGCATTTGGCTGCTCAAGC+TGG | - | chr4_1:2798796-2798815 | Msa0529320:CDS | 50.0% | |
AGCTGGTGTGAGGTATGCTA+TGG | - | chr4_1:2798813-2798832 | Msa0529320:CDS | 50.0% | |
GTAGCGGCATACAAACTAGC+AGG | + | chr4_1:2799003-2799022 | None:intergenic | 50.0% | |
CTGTTTATGGTCCTTGGGGT+AGG | - | chr4_1:2799100-2799119 | Msa0529320:CDS | 50.0% | |
GAATCATGGTACCGTTGCGA+GGG | - | chr4_1:2799194-2799213 | Msa0529320:CDS | 50.0% | |
!! | GCTGAGAAGAGTACTGGAAG+TGG | - | chr4_1:2799270-2799289 | Msa0529320:CDS | 50.0% |
!! | GAGAAGAGTACTGGAAGTGG+TGG | - | chr4_1:2799273-2799292 | Msa0529320:CDS | 50.0% |
! | TGGAAGTGGTGGGAAGAAGA+GGG | - | chr4_1:2799284-2799303 | Msa0529320:CDS | 50.0% |
ATCACTAACAGGAACAGGCG+AGG | + | chr4_1:2799346-2799365 | None:intergenic | 50.0% | |
GGAGAGGCTGTTGAAGACTA+AGG | - | chr4_1:2799380-2799399 | Msa0529320:CDS | 50.0% | |
AACTGCACATCCCCATTCCT+CGG | + | chr4_1:2799429-2799448 | None:intergenic | 50.0% | |
AGTTATGCGCAGAGAGAGCT+TGG | - | chr4_1:2799465-2799484 | Msa0529320:CDS | 50.0% | |
! | TTGAACTTTCCCGGCGTCGA+CGG | + | chr4_1:2798304-2798323 | None:intergenic | 55.0% |
GACGCCGGGAAAGTTCAAGA+TGG | - | chr4_1:2798306-2798325 | Msa0529320:CDS | 55.0% | |
! | CTCCGGCGAAGCTTTGTCTT+TGG | - | chr4_1:2798368-2798387 | Msa0529320:CDS | 55.0% |
ATCCTTCACGGCGGTCATTG+AGG | - | chr4_1:2798461-2798480 | Msa0529320:CDS | 55.0% | |
AGGAGTCCTTCAAACTGGGG+TGG | - | chr4_1:2798481-2798500 | Msa0529320:CDS | 55.0% | |
AAACTGGGGTGGTCCCGTTT+GGG | - | chr4_1:2798492-2798511 | Msa0529320:CDS | 55.0% | |
CGGACACGTTTCTCCCAAAC+GGG | + | chr4_1:2798508-2798527 | None:intergenic | 55.0% | |
AGCAGCTCCGGTCACAAGAA+CGG | + | chr4_1:2798566-2798585 | None:intergenic | 55.0% | |
TCCCTAAAACACCGTCTCCG+CGG | + | chr4_1:2798627-2798646 | None:intergenic | 55.0% | |
TCCTTGGGGTAGGCCTGATA+TGG | - | chr4_1:2799110-2799129 | Msa0529320:CDS | 55.0% | |
CGAATCATGGTACCGTTGCG+AGG | - | chr4_1:2799193-2799212 | Msa0529320:CDS | 55.0% | |
!! | GAGGGGGTGTTTAGGTGCTT+TGG | - | chr4_1:2799242-2799261 | Msa0529320:CDS | 55.0% |
! | CTGGAAGTGGTGGGAAGAAG+AGG | - | chr4_1:2799283-2799302 | Msa0529320:CDS | 55.0% |
! | GGAAGTGGTGGGAAGAAGAG+GGG | - | chr4_1:2799285-2799304 | Msa0529320:CDS | 55.0% |
! | GAAGTGGTGGGAAGAAGAGG+GGG | - | chr4_1:2799286-2799305 | Msa0529320:CDS | 55.0% |
!! | TAAACCGGTGACGGATCTGC+AGG | - | chr4_1:2799491-2799510 | Msa0529320:CDS | 55.0% |
! | TTGAACTTTCCCGGCGTCGA+CGG | + | chr4_1:2798304-2798323 | None:intergenic | 55.0% |
GACGCCGGGAAAGTTCAAGA+TGG | - | chr4_1:2798306-2798325 | Msa0529320:CDS | 55.0% | |
! | CTCCGGCGAAGCTTTGTCTT+TGG | - | chr4_1:2798368-2798387 | Msa0529320:CDS | 55.0% |
ATCCTTCACGGCGGTCATTG+AGG | - | chr4_1:2798461-2798480 | Msa0529320:CDS | 55.0% | |
AGGAGTCCTTCAAACTGGGG+TGG | - | chr4_1:2798481-2798500 | Msa0529320:CDS | 55.0% | |
AAACTGGGGTGGTCCCGTTT+GGG | - | chr4_1:2798492-2798511 | Msa0529320:CDS | 55.0% | |
CGGACACGTTTCTCCCAAAC+GGG | + | chr4_1:2798508-2798527 | None:intergenic | 55.0% | |
AGCAGCTCCGGTCACAAGAA+CGG | + | chr4_1:2798566-2798585 | None:intergenic | 55.0% | |
TCCCTAAAACACCGTCTCCG+CGG | + | chr4_1:2798627-2798646 | None:intergenic | 55.0% | |
TCCTTGGGGTAGGCCTGATA+TGG | - | chr4_1:2799110-2799129 | Msa0529320:CDS | 55.0% | |
CGAATCATGGTACCGTTGCG+AGG | - | chr4_1:2799193-2799212 | Msa0529320:CDS | 55.0% | |
!! | GAGGGGGTGTTTAGGTGCTT+TGG | - | chr4_1:2799242-2799261 | Msa0529320:CDS | 55.0% |
! | CTGGAAGTGGTGGGAAGAAG+AGG | - | chr4_1:2799283-2799302 | Msa0529320:CDS | 55.0% |
! | GGAAGTGGTGGGAAGAAGAG+GGG | - | chr4_1:2799285-2799304 | Msa0529320:CDS | 55.0% |
! | GAAGTGGTGGGAAGAAGAGG+GGG | - | chr4_1:2799286-2799305 | Msa0529320:CDS | 55.0% |
!! | TAAACCGGTGACGGATCTGC+AGG | - | chr4_1:2799491-2799510 | Msa0529320:CDS | 55.0% |
TAACAGTGCTCCGTCGACGC+CGG | - | chr4_1:2798291-2798310 | Msa0529320:CDS | 60.0% | |
! | GAGAAGCGTGCCACCGTACA+CGG | + | chr4_1:2798351-2798370 | None:intergenic | 60.0% |
TGTACGGTGGCACGCTTCTC+CGG | - | chr4_1:2798351-2798370 | Msa0529320:CDS | 60.0% | |
GAGGAGAAGTCGCCGGAGAA+CGG | + | chr4_1:2798432-2798451 | None:intergenic | 60.0% | |
TCCGGCGACTTCTCCTCTTC+CGG | - | chr4_1:2798435-2798454 | Msa0529320:CDS | 60.0% | |
CTCTTCCGGCGGATCCTTCA+CGG | - | chr4_1:2798449-2798468 | Msa0529320:CDS | 60.0% | |
CTCCTCAATGACCGCCGTGA+AGG | + | chr4_1:2798466-2798485 | None:intergenic | 60.0% | |
ACGGGACCACCCCAGTTTGA+AGG | + | chr4_1:2798490-2798509 | None:intergenic | 60.0% | |
CAAACTGGGGTGGTCCCGTT+TGG | - | chr4_1:2798491-2798510 | Msa0529320:CDS | 60.0% | |
TCCGTTCCTCCGCTAGAGTC+CGG | - | chr4_1:2798524-2798543 | Msa0529320:CDS | 60.0% | |
ACCGGACTCTAGCGGAGGAA+CGG | + | chr4_1:2798528-2798547 | None:intergenic | 60.0% | |
GTTCCGTGACCGGACTCTAG+CGG | + | chr4_1:2798536-2798555 | None:intergenic | 60.0% | |
GCTAGAGTCCGGTCACGGAA+CGG | - | chr4_1:2798535-2798554 | Msa0529320:CDS | 60.0% | |
CGGAGAATCCGTTCCGTGAC+CGG | + | chr4_1:2798546-2798565 | None:intergenic | 60.0% | |
GTTCTTGTGACCGGAGCTGC+TGG | - | chr4_1:2798565-2798584 | Msa0529320:CDS | 60.0% | |
!! | ACCGGAGCTGCTGGTTTCGT+CGG | - | chr4_1:2798574-2798593 | Msa0529320:CDS | 60.0% |
TCCGACGAAACCAGCAGCTC+CGG | + | chr4_1:2798578-2798597 | None:intergenic | 60.0% | |
CGTCGGAACACATGTCTCCG+CGG | - | chr4_1:2798591-2798610 | Msa0529320:CDS | 60.0% | |
! | GCCGCGGAGACGGTGTTTTA+GGG | - | chr4_1:2798623-2798642 | Msa0529320:CDS | 60.0% |
TGGCTGCTCAAGCTGGTGTG+AGG | - | chr4_1:2798803-2798822 | Msa0529320:CDS | 60.0% | |
GCCATATCAGGCCTACCCCA+AGG | + | chr4_1:2799114-2799133 | None:intergenic | 60.0% | |
TAACAGTGCTCCGTCGACGC+CGG | - | chr4_1:2798291-2798310 | Msa0529320:CDS | 60.0% | |
! | GAGAAGCGTGCCACCGTACA+CGG | + | chr4_1:2798351-2798370 | None:intergenic | 60.0% |
TGTACGGTGGCACGCTTCTC+CGG | - | chr4_1:2798351-2798370 | Msa0529320:CDS | 60.0% | |
GAGGAGAAGTCGCCGGAGAA+CGG | + | chr4_1:2798432-2798451 | None:intergenic | 60.0% | |
TCCGGCGACTTCTCCTCTTC+CGG | - | chr4_1:2798435-2798454 | Msa0529320:CDS | 60.0% | |
CTCTTCCGGCGGATCCTTCA+CGG | - | chr4_1:2798449-2798468 | Msa0529320:CDS | 60.0% | |
CTCCTCAATGACCGCCGTGA+AGG | + | chr4_1:2798466-2798485 | None:intergenic | 60.0% | |
ACGGGACCACCCCAGTTTGA+AGG | + | chr4_1:2798490-2798509 | None:intergenic | 60.0% | |
CAAACTGGGGTGGTCCCGTT+TGG | - | chr4_1:2798491-2798510 | Msa0529320:CDS | 60.0% | |
TCCGTTCCTCCGCTAGAGTC+CGG | - | chr4_1:2798524-2798543 | Msa0529320:CDS | 60.0% | |
ACCGGACTCTAGCGGAGGAA+CGG | + | chr4_1:2798528-2798547 | None:intergenic | 60.0% | |
GTTCCGTGACCGGACTCTAG+CGG | + | chr4_1:2798536-2798555 | None:intergenic | 60.0% | |
GCTAGAGTCCGGTCACGGAA+CGG | - | chr4_1:2798535-2798554 | Msa0529320:CDS | 60.0% | |
CGGAGAATCCGTTCCGTGAC+CGG | + | chr4_1:2798546-2798565 | None:intergenic | 60.0% | |
GTTCTTGTGACCGGAGCTGC+TGG | - | chr4_1:2798565-2798584 | Msa0529320:CDS | 60.0% | |
!! | ACCGGAGCTGCTGGTTTCGT+CGG | - | chr4_1:2798574-2798593 | Msa0529320:CDS | 60.0% |
TCCGACGAAACCAGCAGCTC+CGG | + | chr4_1:2798578-2798597 | None:intergenic | 60.0% | |
CGTCGGAACACATGTCTCCG+CGG | - | chr4_1:2798591-2798610 | Msa0529320:CDS | 60.0% | |
! | GCCGCGGAGACGGTGTTTTA+GGG | - | chr4_1:2798623-2798642 | Msa0529320:CDS | 60.0% |
TGGCTGCTCAAGCTGGTGTG+AGG | - | chr4_1:2798803-2798822 | Msa0529320:CDS | 60.0% | |
GCCATATCAGGCCTACCCCA+AGG | + | chr4_1:2799114-2799133 | None:intergenic | 60.0% | |
AACAGTGCTCCGTCGACGCC+GGG | - | chr4_1:2798292-2798311 | Msa0529320:CDS | 65.0% | |
GCCGGAAGAGGAGAAGTCGC+CGG | + | chr4_1:2798439-2798458 | None:intergenic | 65.0% | |
GGCGACTTCTCCTCTTCCGG+CGG | - | chr4_1:2798438-2798457 | Msa0529320:CDS | 65.0% | |
CGTGAAGGATCCGCCGGAAG+AGG | + | chr4_1:2798451-2798470 | None:intergenic | 65.0% | |
TTCCGGCGGATCCTTCACGG+CGG | - | chr4_1:2798452-2798471 | Msa0529320:CDS | 65.0% | |
CCTCCGCTAGAGTCCGGTCA+CGG | - | chr4_1:2798530-2798549 | Msa0529320:CDS | 65.0% | |
GCGCTTAAACGCCGCGGAGA+CGG | - | chr4_1:2798613-2798632 | Msa0529320:CDS | 65.0% | |
! | CGCCGCGGAGACGGTGTTTT+AGG | - | chr4_1:2798622-2798641 | Msa0529320:CDS | 65.0% |
TGGTGGGAAGAAGAGGGGGC+CGG | - | chr4_1:2799290-2799309 | Msa0529320:CDS | 65.0% | |
CCAGCCTGCAGATCCGTCAC+CGG | + | chr4_1:2799498-2799517 | None:intergenic | 65.0% | |
AACAGTGCTCCGTCGACGCC+GGG | - | chr4_1:2798292-2798311 | Msa0529320:CDS | 65.0% | |
GCCGGAAGAGGAGAAGTCGC+CGG | + | chr4_1:2798439-2798458 | None:intergenic | 65.0% | |
GGCGACTTCTCCTCTTCCGG+CGG | - | chr4_1:2798438-2798457 | Msa0529320:CDS | 65.0% | |
CGTGAAGGATCCGCCGGAAG+AGG | + | chr4_1:2798451-2798470 | None:intergenic | 65.0% | |
TTCCGGCGGATCCTTCACGG+CGG | - | chr4_1:2798452-2798471 | Msa0529320:CDS | 65.0% | |
CCTCCGCTAGAGTCCGGTCA+CGG | - | chr4_1:2798530-2798549 | Msa0529320:CDS | 65.0% | |
GCGCTTAAACGCCGCGGAGA+CGG | - | chr4_1:2798613-2798632 | Msa0529320:CDS | 65.0% | |
! | CGCCGCGGAGACGGTGTTTT+AGG | - | chr4_1:2798622-2798641 | Msa0529320:CDS | 65.0% |
TGGTGGGAAGAAGAGGGGGC+CGG | - | chr4_1:2799290-2799309 | Msa0529320:CDS | 65.0% | |
CCAGCCTGCAGATCCGTCAC+CGG | + | chr4_1:2799498-2799517 | None:intergenic | 65.0% | |
GACCGCCGTGAAGGATCCGC+CGG | + | chr4_1:2798457-2798476 | None:intergenic | 70.0% | |
CCGTGACCGGACTCTAGCGG+AGG | + | chr4_1:2798533-2798552 | None:intergenic | 70.0% | |
TCCGCGGCGCTTAAACGCCG+CGG | - | chr4_1:2798607-2798626 | Msa0529320:CDS | 70.0% | |
! | TCCGCGGCGTTTAAGCGCCG+CGG | + | chr4_1:2798611-2798630 | None:intergenic | 70.0% |
AGAGGGGGCCGGCACAGTTG+AGG | - | chr4_1:2799301-2799320 | Msa0529320:CDS | 70.0% | |
GAGGGGGCCGGCACAGTTGA+GGG | - | chr4_1:2799302-2799321 | Msa0529320:CDS | 70.0% | |
!! | CCGGTGACGGATCTGCAGGC+TGG | - | chr4_1:2799495-2799514 | Msa0529320:CDS | 70.0% |
GACCGCCGTGAAGGATCCGC+CGG | + | chr4_1:2798457-2798476 | None:intergenic | 70.0% | |
CCGTGACCGGACTCTAGCGG+AGG | + | chr4_1:2798533-2798552 | None:intergenic | 70.0% | |
TCCGCGGCGCTTAAACGCCG+CGG | - | chr4_1:2798607-2798626 | Msa0529320:CDS | 70.0% | |
! | TCCGCGGCGTTTAAGCGCCG+CGG | + | chr4_1:2798611-2798630 | None:intergenic | 70.0% |
AGAGGGGGCCGGCACAGTTG+AGG | - | chr4_1:2799301-2799320 | Msa0529320:CDS | 70.0% | |
GAGGGGGCCGGCACAGTTGA+GGG | - | chr4_1:2799302-2799321 | Msa0529320:CDS | 70.0% | |
!! | CCGGTGACGGATCTGCAGGC+TGG | - | chr4_1:2799495-2799514 | Msa0529320:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 2798259 | 2799581 | 2798259 | ID=Msa0529320;Name=Msa0529320 |
chr4_1 | mRNA | 2798259 | 2799581 | 2798259 | ID=Msa0529320-mRNA-1;Parent=Msa0529320;Name=Msa0529320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|440 |
chr4_1 | exon | 2798259 | 2799581 | 2798259 | ID=Msa0529320-mRNA-1:exon:788;Parent=Msa0529320-mRNA-1 |
chr4_1 | CDS | 2798259 | 2799581 | 2798259 | ID=Msa0529320-mRNA-1:cds;Parent=Msa0529320-mRNA-1 |
Gene Sequence |
Protein sequence |