AlfalfaGEDB | Msa0243320

M. sativa cultivar zhongmu-4 / Msa0243320

KEGG: -
GO: GO:0000226 GO:0001101 GO:0001558 GO:0002237 GO:0003674 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005516 GO:0005543 GO:0005546 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005911 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010118 GO:0010350 GO:0010555 GO:0010638 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016032 GO:0016043 GO:0018377 GO:0019058 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0030308 GO:0030865 GO:0031110 GO:0031111 GO:0031112 GO:0031113 GO:0031114 GO:0031115 GO:0031117 GO:0031122 GO:0031224 GO:0031225 GO:0031226 GO:0031333 GO:0031365 GO:0031667 GO:0031668 GO:0031669 GO:0032026 GO:0032271 GO:0032272 GO:0032886 GO:0033043 GO:0033554 GO:0034645 GO:0035091 GO:0035864 GO:0035865 GO:0036211 GO:0040008 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043243 GO:0043244 GO:0043254 GO:0043325 GO:0043412 GO:0043543 GO:0043622 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044766 GO:0045926 GO:0046658 GO:0046688 GO:0046794 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051494 GO:0051495 GO:0051510 GO:0051511 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070507 GO:0070887 GO:0071214 GO:0071216 GO:0071219 GO:0071241 GO:0071248 GO:0071280 GO:0071281 GO:0071286 GO:0071310 GO:0071322 GO:0071325 GO:0071470 GO:0071472 GO:0071496 GO:0071704 GO:0071840 GO:0071944 GO:0072708 GO:0072709 GO:0075733 GO:0080025 GO:0090332 GO:0097435 GO:0098542 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0104004 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1901879 GO:1901881 GO:1901981 GO:1902579 GO:1902903 GO:1902904 GO:1902905 GO:1902936
PFAM: PF05558.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243320	XP_013463310.1	98.131	214	4	0	1	214	1	214	8.03e-137	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243320	sp\|Q96262\|PCAP1_ARATH	61.326	181	58	2	1	171	1	179	3.66e-54	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243320	B7FH09	98.131	214	4	0	1	214	1	214	3.83e-137	392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023330	Msa0243320	0.819234	1.292655e-52	-8.615850e-47
Msa0042550	Msa0243320	0.807577	4.723251e-50	-8.615850e-47
Msa0043980	Msa0243320	0.807122	5.898079e-50	-8.615850e-47
Msa0045550	Msa0243320	0.822393	2.426972e-53	-8.615850e-47
Msa0051630	Msa0243320	0.818944	1.504489e-52	-8.615850e-47
Msa0051740	Msa0243320	0.818253	2.158880e-52	-8.615850e-47
Msa0051750	Msa0243320	0.813945	1.979029e-51	-8.615850e-47
Msa0055070	Msa0243320	0.834779	2.459803e-56	-8.615850e-47
Msa0077450	Msa0243320	0.823964	1.042802e-53	-8.615850e-47
Msa0078420	Msa0243320	0.810916	9.083428e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243320	MtrunA17_Chr2g0296431	98.131	214	4	0	1	214	1	214	7.38e-141	392

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0243320	AT4G20260.8	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.1	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.3	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.2	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.9	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.7	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.10	61.326	181	58	2	1	171	1	179	3.72e-55	176
Msa0243320	AT4G20260.6	68.243	148	43	2	1	145	1	147	4.95e-54	171
Msa0243320	AT4G20260.5	67.857	140	45	0	1	140	1	140	1.39e-53	169
Msa0243320	AT4G20260.4	60.989	182	58	3	1	171	1	180	1.93e-53	171

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Find 52 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAAGATGAAACAAG+TGG	0.618986	2_2:-20284343	Msa0243320:CDS
AAAACCGGTTGAACCAGCTG+CGG	0.690812	2_2:-20284185	Msa0243320:CDS
AAACAAGTGGTGTTAAAGAG+AGG	0.557539	2_2:-20284330	Msa0243320:CDS
AAACATTTGGAAGCAAAAGA+TGG	0.424068	2_2:-20285343	Msa0243320:exon
AAAGGAAAATAAAGCAAAAC+AGG	0.336266	2_2:+20283847	None:intergenic
AACAAGTGGTGTTAAAGAGA+GGG	0.574339	2_2:-20284329	Msa0243320:CDS
AACATTTGGAAGCAAAAGAT+GGG	0.550046	2_2:-20285342	Msa0243320:exon
AACTAAGGCTGGTCCAAACT+TGG	0.441827	2_2:+20284456	None:intergenic
AAGAAATTGTGACTTTGGAT+TGG	0.448558	2_2:-20283937	Msa0243320:three_prime_UTR
AAGCAAAACAGGGACATATA+TGG	0.360009	2_2:+20283858	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATAAGAACTCAAGGTTA+AGG	-	chr2_2:20283988-20284007	Msa0243320:three_prime_UTR	30.0%
AAACATTTGGAAGCAAAAGA+TGG	-	chr2_2:20284023-20284042	Msa0243320:three_prime_UTR	30.0%
AACATTTGGAAGCAAAAGAT+GGG	-	chr2_2:20284024-20284043	Msa0243320:three_prime_UTR	30.0%
TCAAAAACCTTCTTGATCTT+GGG	+	chr2_2:20284072-20284091	None:intergenic	30.0%
TTAGACTAGATACATGTATC+TGG	-	chr2_2:20284554-20284573	Msa0243320:intron	30.0%
GAAAAAGACACCAATATTGA+TGG	-	chr2_2:20284656-20284675	Msa0243320:CDS	30.0%
AATATCACCTTTACAGAGTT+TGG	-	chr2_2:20284688-20284707	Msa0243320:intron	30.0%
AAAACAGAAGATGAAACAAG+TGG	-	chr2_2:20285023-20285042	Msa0243320:CDS	30.0%
AGTTGTTGAAGAAGAGAAAA+AGG	-	chr2_2:20285064-20285083	Msa0243320:intron	30.0%
AATTGAATCTTCTGCAGAAA+AGG	-	chr2_2:20285103-20285122	Msa0243320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	20283856	20285532	20283856	ID=Msa0243320;Name=Msa0243320
chr2_2	mRNA	20283856	20285532	20283856	ID=Msa0243320-mRNA-1;Parent=Msa0243320;Name=Msa0243320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186\|1\|1\|1\|1\|1\|4\|300\|214
chr2_2	exon	20283856	20284514	20283856	ID=Msa0243320-mRNA-1:exon:8170;Parent=Msa0243320-mRNA-1
chr2_2	exon	20284600	20284684	20284600	ID=Msa0243320-mRNA-1:exon:8169;Parent=Msa0243320-mRNA-1
chr2_2	exon	20284976	20285065	20284976	ID=Msa0243320-mRNA-1:exon:8168;Parent=Msa0243320-mRNA-1
chr2_2	exon	20285236	20285532	20285236	ID=Msa0243320-mRNA-1:exon:8167;Parent=Msa0243320-mRNA-1
chr2_2	five_prime_UTR	20285347	20285532	20285347	ID=Msa0243320-mRNA-1:five_prime_utr;Parent=Msa0243320-mRNA-1
chr2_2	CDS	20285236	20285346	20285236	ID=Msa0243320-mRNA-1:cds;Parent=Msa0243320-mRNA-1
chr2_2	CDS	20284976	20285065	20284976	ID=Msa0243320-mRNA-1:cds;Parent=Msa0243320-mRNA-1
chr2_2	CDS	20284600	20284684	20284600	ID=Msa0243320-mRNA-1:cds;Parent=Msa0243320-mRNA-1
chr2_2	CDS	20284156	20284514	20284156	ID=Msa0243320-mRNA-1:cds;Parent=Msa0243320-mRNA-1
chr2_2	three_prime_UTR	20283856	20284155	20283856	ID=Msa0243320-mRNA-1:three_prime_utr;Parent=Msa0243320-mRNA-1

Gene Sequence

>Msa0243320

ATGGGTTACTGGACAACAAAGGTTCTTCCCAAGATCAAGAAGGTTTTTGAGAAGAATAGTACTAAGAAAACAGCTGCTGCTGAGGTTTCCAAGACCTTTGATGAGTCAAAGGAGGGAATCAATAAAGAGTTTGAGGAAAAGAAAACTGAACTTCAAACAAAAGTACTTGCTGTATATGAAGCATCTTCAACTGAAATCAAGAGTTTGGTCAAAGAACGTGATGTAGCAGGTCTAAAGAAGAACTCAACAGAAGCTCACAAATTCATAGAAGAACTTGTTAAAATTGATTTTCCTGGATCAAAAGCAGTATCTGAAGCATCATCCAAGTTTGGACCAGCCTTAGTTTCAGGTCCAGTTTTCTTTGTTTTTGAGAAGGTATCAACTTTCATAGTCACAGAAGAGAAAGTTGAAGAAGCACCTGCTACTACAGAAACAAAAACAGAAGATGAAACAAGTGGTGTTAAAGAGAGGGAAATAGTTGTTGAAGAAGAGAAAAAGGAAGAAACTAGTGAGAAAATTGAATCTTCTGCAGAAAAGGTTGAAGAAAAGGATGCAGCTGAGCCGGCTCCTCCTCCCGCGGAGAAACAGGAGGAAAAACCGGTTGAACCAGCTGCGGTTGAACAAGTAGAACCACCAAAGGCTTGA

Protein sequence

>Msa0243320

MGYWTTKVLPKIKKVFEKNSTKKTAAAEVSKTFDESKEGINKEFEEKKTELQTKVLAVYEASSTEIKSLVKERDVAGLKKNSTEAHKFIEELVKIDFPGSKAVSEASSKFGPALVSGPVFFVFEKVSTFIVTEEKVEEAPATTETKTEDETSGVKEREIVVEEEKKEETSEKIESSAEKVEEKDAAEPAPPPAEKQEEKPVEPAAVEQVEPPKA*