Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088950 | XP_003597636.1 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 2.41e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088950 | sp|Q8LE58|CHM1A_ARATH | 87.805 | 205 | 23 | 1 | 1 | 205 | 1 | 203 | 1.07e-129 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088950 | B7FHV8 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 1.15e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1088950 | 0.807445 | 5.036352e-50 | -8.615850e-47 |
| Msa0015390 | Msa1088950 | 0.833059 | 6.628057e-56 | -8.615850e-47 |
| Msa0020410 | Msa1088950 | 0.800013 | 1.758443e-48 | -8.615850e-47 |
| Msa0026910 | Msa1088950 | 0.810870 | 9.296896e-51 | -8.615850e-47 |
| Msa0057680 | Msa1088950 | -0.800379 | 1.481925e-48 | -8.615850e-47 |
| Msa0068740 | Msa1088950 | -0.810715 | 1.004279e-50 | -8.615850e-47 |
| Msa0075880 | Msa1088950 | 0.811897 | 5.562275e-51 | -8.615850e-47 |
| Msa0079070 | Msa1088950 | 0.820974 | 5.163806e-53 | -8.615850e-47 |
| Msa0105260 | Msa1088950 | 0.810207 | 1.293094e-50 | -8.615850e-47 |
| Msa0607910 | Msa1088950 | 0.815927 | 7.194842e-52 | -8.615850e-47 |
| Msa0634700 | Msa1088950 | 0.800716 | 1.265156e-48 | -8.615850e-47 |
| Msa0663800 | Msa1088950 | 0.806187 | 9.289633e-50 | -8.615850e-47 |
| Msa0672570 | Msa1088950 | 0.805210 | 1.490036e-49 | -8.615850e-47 |
| Msa0673460 | Msa1088950 | 0.820871 | 5.455301e-53 | -8.615850e-47 |
| Msa0697040 | Msa1088950 | 0.800628 | 1.318029e-48 | -8.615850e-47 |
| Msa0740510 | Msa1088950 | 0.811324 | 7.411725e-51 | -8.615850e-47 |
| Msa0775190 | Msa1088950 | 0.828171 | 1.042529e-54 | -8.615850e-47 |
| Msa0794510 | Msa1088950 | -0.803423 | 3.511523e-49 | -8.615850e-47 |
| Msa0800210 | Msa1088950 | 0.813314 | 2.724960e-51 | -8.615850e-47 |
| Msa0802830 | Msa1088950 | 0.816551 | 5.216731e-52 | -8.615850e-47 |
| Msa0820770 | Msa1088950 | 0.823067 | 1.690741e-53 | -8.615850e-47 |
| Msa0820850 | Msa1088950 | 0.839073 | 1.970580e-57 | -8.615850e-47 |
| Msa0831850 | Msa1088950 | 0.810226 | 1.280497e-50 | -8.615850e-47 |
| Msa0832340 | Msa1088950 | 0.831288 | 1.817811e-55 | -8.615850e-47 |
| Msa0131770 | Msa1088950 | 0.817720 | 2.848901e-52 | -8.615850e-47 |
| Msa0138020 | Msa1088950 | 0.806935 | 6.458826e-50 | -8.615850e-47 |
| Msa0145190 | Msa1088950 | 0.825027 | 5.862884e-54 | -8.615850e-47 |
| Msa0194440 | Msa1088950 | 0.814069 | 1.858783e-51 | -8.615850e-47 |
| Msa0201070 | Msa1088950 | 0.827449 | 1.554661e-54 | -8.615850e-47 |
| Msa0204840 | Msa1088950 | 0.806430 | 8.256709e-50 | -8.615850e-47 |
| Msa0206010 | Msa1088950 | 0.808789 | 2.605739e-50 | -8.615850e-47 |
| Msa0210450 | Msa1088950 | 0.811102 | 8.280394e-51 | -8.615850e-47 |
| Msa0218370 | Msa1088950 | 0.812211 | 4.751581e-51 | -8.615850e-47 |
| Msa0218470 | Msa1088950 | 0.814466 | 1.519103e-51 | -8.615850e-47 |
| Msa0218580 | Msa1088950 | 0.810623 | 1.051312e-50 | -8.615850e-47 |
| Msa0220740 | Msa1088950 | 0.811806 | 5.822471e-51 | -8.615850e-47 |
| Msa0223120 | Msa1088950 | 0.801217 | 9.994799e-49 | -8.615850e-47 |
| Msa0223910 | Msa1088950 | 0.813639 | 2.311361e-51 | -8.615850e-47 |
| Msa0236420 | Msa1088950 | 0.815234 | 1.026288e-51 | -8.615850e-47 |
| Msa0381610 | Msa1088950 | -0.811634 | 6.345748e-51 | -8.615850e-47 |
| Msa0390400 | Msa1088950 | -0.814985 | 1.165842e-51 | -8.615850e-47 |
| Msa0394260 | Msa1088950 | 0.803048 | 4.198106e-49 | -8.615850e-47 |
| Msa0394470 | Msa1088950 | 0.803694 | 3.085227e-49 | -8.615850e-47 |
| Msa0411390 | Msa1088950 | 0.804213 | 2.406025e-49 | -8.615850e-47 |
| Msa0417330 | Msa1088950 | 0.812249 | 4.662222e-51 | -8.615850e-47 |
| Msa0433410 | Msa1088950 | -0.825536 | 4.442945e-54 | -8.615850e-47 |
| Msa0434180 | Msa1088950 | 0.803597 | 3.231535e-49 | -8.615850e-47 |
| Msa0453000 | Msa1088950 | 0.801271 | 9.739566e-49 | -8.615850e-47 |
| Msa0455760 | Msa1088950 | 0.824750 | 6.813951e-54 | -8.615850e-47 |
| Msa0469940 | Msa1088950 | -0.804477 | 2.120237e-49 | -8.615850e-47 |
| Msa0471900 | Msa1088950 | 0.802561 | 5.292451e-49 | -8.615850e-47 |
| Msa0980880 | Msa1088950 | 0.802082 | 6.640688e-49 | -8.615850e-47 |
| Msa1004010 | Msa1088950 | 0.801080 | 1.065814e-48 | -8.615850e-47 |
| Msa1017350 | Msa1088950 | 0.805662 | 1.197972e-49 | -8.615850e-47 |
| Msa1023950 | Msa1088950 | 0.808635 | 2.811634e-50 | -8.615850e-47 |
| Msa1075650 | Msa1088950 | 0.804007 | 2.655789e-49 | -8.615850e-47 |
| Msa1077340 | Msa1088950 | 0.807418 | 5.104969e-50 | -8.615850e-47 |
| Msa1088950 | Msa1121480 | 0.814963 | 1.178742e-51 | -8.615850e-47 |
| Msa1088950 | Msa1121490 | 0.814807 | 1.276278e-51 | -8.615850e-47 |
| Msa1088950 | Msa1147740 | 0.802165 | 6.386757e-49 | -8.615850e-47 |
| Msa1088950 | Msa1174040 | 0.802625 | 5.132415e-49 | -8.615850e-47 |
| Msa1088950 | Msa1178110 | 0.804007 | 2.656476e-49 | -8.615850e-47 |
| Msa1088950 | Msa1184840 | 0.815500 | 8.957170e-52 | -8.615850e-47 |
| Msa1088950 | Msa1282580 | -0.808267 | 3.369061e-50 | -8.615850e-47 |
| Msa1088950 | Msa1284680 | 0.816508 | 5.333171e-52 | -8.615850e-47 |
| Msa1088950 | Msa1305810 | 0.816671 | 4.903971e-52 | -8.615850e-47 |
| Msa1088950 | Msa1306850 | 0.805065 | 1.597840e-49 | -8.615850e-47 |
| Msa1088950 | Msa1325860 | -0.833873 | 4.153537e-56 | -8.615850e-47 |
| Msa1088950 | Msa1331320 | 0.804945 | 1.692669e-49 | -8.615850e-47 |
| Msa1088950 | Msa1353470 | 0.804844 | 1.776918e-49 | -8.615850e-47 |
| Msa1088950 | Msa1407060 | 0.996714 | 3.341367e-231 | -8.615850e-47 |
| Msa1088950 | Msa1420820 | 0.834454 | 2.969874e-56 | -8.615850e-47 |
| Msa1088950 | Msa1426710 | 0.817679 | 2.910586e-52 | -8.615850e-47 |
| Msa1088950 | Msa1466540 | 0.807585 | 4.704038e-50 | -8.615850e-47 |
| Msa0239240 | Msa1088950 | 0.800439 | 1.440607e-48 | -8.615850e-47 |
| Msa0270960 | Msa1088950 | 0.816755 | 4.694913e-52 | -8.615850e-47 |
| Msa0281930 | Msa1088950 | 0.811270 | 7.613674e-51 | -8.615850e-47 |
| Msa0286670 | Msa1088950 | 0.807361 | 5.248211e-50 | -8.615850e-47 |
| Msa0287410 | Msa1088950 | 0.803082 | 4.130198e-49 | -8.615850e-47 |
| Msa0288120 | Msa1088950 | 0.815365 | 9.596580e-52 | -8.615850e-47 |
| Msa0306210 | Msa1088950 | -0.836769 | 7.704632e-57 | -8.615850e-47 |
| Msa0317010 | Msa1088950 | 0.803801 | 2.931301e-49 | -8.615850e-47 |
| Msa0326110 | Msa1088950 | 0.822583 | 2.192147e-53 | -8.615850e-47 |
| Msa0340450 | Msa1088950 | 0.811488 | 6.826677e-51 | -8.615850e-47 |
| Msa0342750 | Msa1088950 | 0.809852 | 1.541764e-50 | -8.615850e-47 |
| Msa0344690 | Msa1088950 | -0.807615 | 4.634809e-50 | -8.615850e-47 |
| Msa0363790 | Msa1088950 | 0.827002 | 1.989370e-54 | -8.615850e-47 |
| Msa0485490 | Msa1088950 | 0.825065 | 5.742490e-54 | -8.615850e-47 |
| Msa0516440 | Msa1088950 | 0.818128 | 2.303440e-52 | -8.615850e-47 |
| Msa0535630 | Msa1088950 | 0.800862 | 1.180758e-48 | -8.615850e-47 |
| Msa0538600 | Msa1088950 | 0.802053 | 6.734132e-49 | -8.615850e-47 |
| Msa0547890 | Msa1088950 | 0.805618 | 1.223990e-49 | -8.615850e-47 |
| Msa0549910 | Msa1088950 | 0.804675 | 1.927350e-49 | -8.615850e-47 |
| Msa0559500 | Msa1088950 | 0.808670 | 2.763432e-50 | -8.615850e-47 |
| Msa0842710 | Msa1088950 | 0.809428 | 1.901726e-50 | -8.615850e-47 |
| Msa0861090 | Msa1088950 | 0.819042 | 1.429489e-52 | -8.615850e-47 |
| Msa0861130 | Msa1088950 | 0.838381 | 2.974217e-57 | -8.615850e-47 |
| Msa0876580 | Msa1088950 | 0.817377 | 3.404175e-52 | -8.615850e-47 |
| Msa0894710 | Msa1088950 | 0.806498 | 7.988592e-50 | -8.615850e-47 |
| Msa0925870 | Msa1088950 | 0.820832 | 5.568225e-53 | -8.615850e-47 |
| Msa0927380 | Msa1088950 | 0.824913 | 6.237220e-54 | -8.615850e-47 |
| Msa0932830 | Msa1088950 | 0.817078 | 3.974627e-52 | -8.615850e-47 |
| Msa0933100 | Msa1088950 | 0.807634 | 4.592196e-50 | -8.615850e-47 |
| Msa0936390 | Msa1088950 | 0.818267 | 2.143348e-52 | -8.615850e-47 |
| Msa0958920 | Msa1088950 | 0.812748 | 3.627287e-51 | -8.615850e-47 |
| Msa0969520 | Msa1088950 | 0.826873 | 2.136097e-54 | -8.615850e-47 |
| Msa0976670 | Msa1088950 | 0.801646 | 8.162416e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088950 | MtrunA17_Chr2g0330571 | 100.000 | 205 | 0 | 0 | 1 | 205 | 1 | 205 | 2.21e-150 | 415 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088950 | AT1G17730.1 | 87.805 | 205 | 23 | 1 | 1 | 205 | 1 | 203 | 1.09e-130 | 366 |
| Msa1088950 | AT1G73030.1 | 88.293 | 205 | 22 | 1 | 1 | 205 | 1 | 203 | 8.84e-119 | 335 |
| Msa1088950 | AT2G06530.2 | 27.273 | 165 | 116 | 2 | 19 | 180 | 7 | 170 | 6.62e-12 | 62.4 |
| Msa1088950 | AT2G06530.1 | 27.273 | 165 | 116 | 2 | 19 | 180 | 28 | 191 | 8.73e-12 | 62.4 |
Find 56 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAGGTGGCGGATGATTA+TGG | 0.176951 | 7_3:-2315225 | Msa1088950:CDS |
| GGAGGTTCAAGCGGAGTTTA+TGG | 0.198154 | 7_3:-2315310 | Msa1088950:CDS |
| CGAGAAGCAGTTTGTGAATA+TGG | 0.254306 | 7_3:-2315331 | Msa1088950:CDS |
| GTCGACAATCAGCAAATCTA+TGG | 0.272483 | 7_3:-2315430 | Msa1088950:CDS |
| TCATCTGCTCTGTGCGTTTA+CGG | 0.305607 | 7_3:+2315517 | None:intergenic |
| GGAAGTTTCGGTTAATCTTC+CGG | 0.355996 | 7_3:-2315199 | Msa1088950:CDS |
| TGATTATGGGCTGGAAGTTT+CGG | 0.370615 | 7_3:-2315211 | Msa1088950:CDS |
| GGCGGCTGCTCATGCTGTTC+CGG | 0.374454 | 7_3:-2315175 | Msa1088950:CDS |
| TGCTCATGCTGTTCCGGTTA+AGG | 0.374890 | 7_3:-2315169 | Msa1088950:CDS |
| TCAGCATCCTTCTCCTTAAC+CGG | 0.398938 | 7_3:+2315156 | None:intergenic |
| GAGCACTCACGGCGTCCAAT+CGG | 0.402083 | 7_3:+2315475 | None:intergenic |
| CGTCCAATCGGGAGGATAAT+CGG | 0.420046 | 7_3:+2315487 | None:intergenic |
| CGACATCTTCTGCAAATTCC+CGG | 0.428245 | 7_3:+2315371 | None:intergenic |
| GGTTAATAGTTTGATGCAAC+AGG | 0.440152 | 7_3:-2315241 | Msa1088950:CDS |
| AACAGGTGGCGGATGATTAT+GGG | 0.452583 | 7_3:-2315224 | Msa1088950:CDS |
| TTCCCTTTCGACTCCGGAAG+GGG | 0.455520 | 7_3:-2315265 | Msa1088950:CDS |
| TTCGGTTAATCTTCCGGTGG+CGG | 0.462698 | 7_3:-2315193 | Msa1088950:CDS |
| ATCGACTTCCCTTTCGACTC+CGG | 0.467684 | 7_3:-2315271 | Msa1088950:CDS |
| TTGGAATCGTCGTTGGCGAC+CGG | 0.469029 | 7_3:-2315390 | Msa1088950:CDS |
| CTCCCCTTCCGGAGTCGAAA+GGG | 0.473087 | 7_3:+2315263 | None:intergenic |
| AAGCTTCTCTGTGTTTCCCA+TGG | 0.476337 | 7_3:+2315695 | None:intergenic |
| TAGTTTGATGCAACAGGTGG+CGG | 0.477361 | 7_3:-2315235 | Msa1088950:CDS |
| AGCACTCACGGCGTCCAATC+GGG | 0.483446 | 7_3:+2315476 | None:intergenic |
| ACAGCATGAGCAGCCGCCAC+CGG | 0.500440 | 7_3:+2315180 | None:intergenic |
| TGGAATCGTCGTTGGCGACC+GGG | 0.513207 | 7_3:-2315389 | Msa1088950:CDS |
| TGCTGTTCCGGTTAAGGAGA+AGG | 0.523122 | 7_3:-2315163 | Msa1088950:CDS |
| CTTCCCTTTCGACTCCGGAA+GGG | 0.524629 | 7_3:-2315266 | Msa1088950:CDS |
| AAACTATTAACCTCCCCTTC+CGG | 0.527569 | 7_3:+2315252 | None:intergenic |
| GGGAAACATCGTGAAATCGT+TGG | 0.530824 | 7_3:-2315409 | Msa1088950:CDS |
| CCAAGCACGAAAATGCGAAA+AGG | 0.531908 | 7_3:-2315625 | Msa1088950:CDS |
| GAAGCTTCTGAATCAGATCA+TGG | 0.534967 | 7_3:-2315679 | Msa1088950:CDS |
| ACTTCCCTTTCGACTCCGGA+AGG | 0.549210 | 7_3:-2315267 | Msa1088950:CDS |
| GCAGAAGATGTCGGAGACGA+TGG | 0.561045 | 7_3:-2315361 | Msa1088950:CDS |
| TAAGGAGAAGGATGCTGAGA+AGG | 0.573843 | 7_3:-2315151 | Msa1088950:CDS |
| TCGACAATCAGCAAATCTAT+GGG | 0.575428 | 7_3:-2315429 | Msa1088950:CDS |
| CCTCCCCTTCCGGAGTCGAA+AGG | 0.580228 | 7_3:+2315262 | None:intergenic |
| GAAATCGTTGGAATCGTCGT+TGG | 0.580522 | 7_3:-2315397 | Msa1088950:CDS |
| GGAGTTTATGGAAAGTGCTA+TGG | 0.582336 | 7_3:-2315298 | Msa1088950:CDS |
| CCTTTCGACTCCGGAAGGGG+AGG | 0.586411 | 7_3:-2315262 | Msa1088950:CDS |
| CTTGCTGAGCTTAAAGCTAG+AGG | 0.589782 | 7_3:-2315102 | Msa1088950:CDS |
| GGTGGCGGATGATTATGGGC+TGG | 0.595315 | 7_3:-2315220 | Msa1088950:CDS |
| GGATGCTGAGAAGGTTGATG+AGG | 0.596267 | 7_3:-2315142 | Msa1088950:CDS |
| GTTTATGGAAAGTGCTATGG+CGG | 0.596862 | 7_3:-2315295 | Msa1088950:CDS |
| TGTGAATATGGAGGTTCAAG+CGG | 0.607620 | 7_3:-2315319 | Msa1088950:CDS |
| GAGTGCTCGTCTCGATACAC+AGG | 0.608048 | 7_3:-2315460 | Msa1088950:CDS |
| AGCAATCGAGAAAGGTAACA+TGG | 0.611081 | 7_3:-2315571 | Msa1088950:CDS |
| TGTATCGAGACGAGCACTCA+CGG | 0.615716 | 7_3:+2315464 | None:intergenic |
| CGGGAATTTGCAGAAGATGT+CGG | 0.620775 | 7_3:-2315370 | Msa1088950:CDS |
| CCTCCGATTATCCTCCCGAT+TGG | 0.622929 | 7_3:-2315490 | Msa1088950:CDS |
| ATCGAGAAAGGTAACATGGA+CGG | 0.631489 | 7_3:-2315567 | Msa1088950:CDS |
| TTGATGAGGATGATTTGTCA+AGG | 0.632184 | 7_3:-2315128 | Msa1088950:CDS |
| TTTATGGAAAGTGCTATGGC+GGG | 0.633565 | 7_3:-2315294 | Msa1088950:CDS |
| TAATAGTTTGATGCAACAGG+TGG | 0.645930 | 7_3:-2315238 | Msa1088950:CDS |
| GAAGCAGTTTGTGAATATGG+AGG | 0.657749 | 7_3:-2315328 | Msa1088950:CDS |
| AGTTTCGGTTAATCTTCCGG+TGG | 0.683279 | 7_3:-2315196 | Msa1088950:CDS |
| CCAATCGGGAGGATAATCGG+AGG | 0.739296 | 7_3:+2315490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCACCTTGAGTTTTT+CGG | + | chr7_3:2315201-2315220 | None:intergenic | 25.0% |
| AGAGAAATCCGAAAAACTCA+AGG | - | chr7_3:2315190-2315209 | Msa1088950:CDS | 35.0% | |
| GTGAAAAAAGCAATCGAGAA+AGG | - | chr7_3:2315212-2315231 | Msa1088950:CDS | 35.0% | |
| TCGACAATCAGCAAATCTAT+GGG | - | chr7_3:2315362-2315381 | Msa1088950:CDS | 35.0% | |
| GGTTAATAGTTTGATGCAAC+AGG | - | chr7_3:2315550-2315569 | Msa1088950:CDS | 35.0% | |
| TAATAGTTTGATGCAACAGG+TGG | - | chr7_3:2315553-2315572 | Msa1088950:CDS | 35.0% | |
| ! | TTGATGAGGATGATTTGTCA+AGG | - | chr7_3:2315663-2315682 | Msa1088950:CDS | 35.0% |
| GAAGCTTCTGAATCAGATCA+TGG | - | chr7_3:2315112-2315131 | Msa1088950:CDS | 40.0% | |
| !! | TTGGCGTTGAAGAGATTTTG+AGG | + | chr7_3:2315150-2315169 | None:intergenic | 40.0% |
| AGCAATCGAGAAAGGTAACA+TGG | - | chr7_3:2315220-2315239 | Msa1088950:CDS | 40.0% | |
| ATCGAGAAAGGTAACATGGA+CGG | - | chr7_3:2315224-2315243 | Msa1088950:CDS | 40.0% | |
| GTCGACAATCAGCAAATCTA+TGG | - | chr7_3:2315361-2315380 | Msa1088950:CDS | 40.0% | |
| CGAGAAGCAGTTTGTGAATA+TGG | - | chr7_3:2315460-2315479 | Msa1088950:CDS | 40.0% | |
| GAAGCAGTTTGTGAATATGG+AGG | - | chr7_3:2315463-2315482 | Msa1088950:CDS | 40.0% | |
| TGTGAATATGGAGGTTCAAG+CGG | - | chr7_3:2315472-2315491 | Msa1088950:CDS | 40.0% | |
| !! | GGAGTTTATGGAAAGTGCTA+TGG | - | chr7_3:2315493-2315512 | Msa1088950:CDS | 40.0% |
| !! | GTTTATGGAAAGTGCTATGG+CGG | - | chr7_3:2315496-2315515 | Msa1088950:CDS | 40.0% |
| !! | TTTATGGAAAGTGCTATGGC+GGG | - | chr7_3:2315497-2315516 | Msa1088950:CDS | 40.0% |
| AAACTATTAACCTCCCCTTC+CGG | + | chr7_3:2315542-2315561 | None:intergenic | 40.0% | |
| !! | TGATTATGGGCTGGAAGTTT+CGG | - | chr7_3:2315580-2315599 | Msa1088950:CDS | 40.0% |
| GGAAGTTTCGGTTAATCTTC+CGG | - | chr7_3:2315592-2315611 | Msa1088950:CDS | 40.0% | |
| ! | CCTTTTCGCATTTTCGTGCT+TGG | + | chr7_3:2315169-2315188 | None:intergenic | 45.0% |
| CCAAGCACGAAAATGCGAAA+AGG | - | chr7_3:2315166-2315185 | Msa1088950:CDS | 45.0% | |
| TCATCTGCTCTGTGCGTTTA+CGG | + | chr7_3:2315277-2315296 | None:intergenic | 45.0% | |
| GGGAAACATCGTGAAATCGT+TGG | - | chr7_3:2315382-2315401 | Msa1088950:CDS | 45.0% | |
| GAAATCGTTGGAATCGTCGT+TGG | - | chr7_3:2315394-2315413 | Msa1088950:CDS | 45.0% | |
| CGACATCTTCTGCAAATTCC+CGG | + | chr7_3:2315423-2315442 | None:intergenic | 45.0% | |
| CGGGAATTTGCAGAAGATGT+CGG | - | chr7_3:2315421-2315440 | Msa1088950:CDS | 45.0% | |
| TAGTTTGATGCAACAGGTGG+CGG | - | chr7_3:2315556-2315575 | Msa1088950:CDS | 45.0% | |
| !! | AACAGGTGGCGGATGATTAT+GGG | - | chr7_3:2315567-2315586 | Msa1088950:CDS | 45.0% |
| AGTTTCGGTTAATCTTCCGG+TGG | - | chr7_3:2315595-2315614 | Msa1088950:CDS | 45.0% | |
| TCAGCATCCTTCTCCTTAAC+CGG | + | chr7_3:2315638-2315657 | None:intergenic | 45.0% | |
| TAAGGAGAAGGATGCTGAGA+AGG | - | chr7_3:2315640-2315659 | Msa1088950:CDS | 45.0% | |
| CTTGCTGAGCTTAAAGCTAG+AGG | - | chr7_3:2315689-2315708 | Msa1088950:CDS | 45.0% | |
| CGTCCAATCGGGAGGATAAT+CGG | + | chr7_3:2315307-2315326 | None:intergenic | 50.0% | |
| TGTATCGAGACGAGCACTCA+CGG | + | chr7_3:2315330-2315349 | None:intergenic | 50.0% | |
| GGAGGTTCAAGCGGAGTTTA+TGG | - | chr7_3:2315481-2315500 | Msa1088950:CDS | 50.0% | |
| ! | ATCGACTTCCCTTTCGACTC+CGG | - | chr7_3:2315520-2315539 | Msa1088950:CDS | 50.0% |
| !! | CAACAGGTGGCGGATGATTA+TGG | - | chr7_3:2315566-2315585 | Msa1088950:CDS | 50.0% |
| TTCGGTTAATCTTCCGGTGG+CGG | - | chr7_3:2315598-2315617 | Msa1088950:CDS | 50.0% | |
| TGCTCATGCTGTTCCGGTTA+AGG | - | chr7_3:2315622-2315641 | Msa1088950:CDS | 50.0% | |
| TGCTGTTCCGGTTAAGGAGA+AGG | - | chr7_3:2315628-2315647 | Msa1088950:CDS | 50.0% | |
| !! | GGATGCTGAGAAGGTTGATG+AGG | - | chr7_3:2315649-2315668 | Msa1088950:CDS | 50.0% |
| CCAATCGGGAGGATAATCGG+AGG | + | chr7_3:2315304-2315323 | None:intergenic | 55.0% | |
| CCTCCGATTATCCTCCCGAT+TGG | - | chr7_3:2315301-2315320 | Msa1088950:CDS | 55.0% | |
| GAGTGCTCGTCTCGATACAC+AGG | - | chr7_3:2315331-2315350 | Msa1088950:CDS | 55.0% | |
| TTGGAATCGTCGTTGGCGAC+CGG | - | chr7_3:2315401-2315420 | Msa1088950:CDS | 55.0% | |
| GCAGAAGATGTCGGAGACGA+TGG | - | chr7_3:2315430-2315449 | Msa1088950:CDS | 55.0% | |
| ACTTCCCTTTCGACTCCGGA+AGG | - | chr7_3:2315524-2315543 | Msa1088950:CDS | 55.0% | |
| CTTCCCTTTCGACTCCGGAA+GGG | - | chr7_3:2315525-2315544 | Msa1088950:CDS | 55.0% | |
| TTCCCTTTCGACTCCGGAAG+GGG | - | chr7_3:2315526-2315545 | Msa1088950:CDS | 55.0% | |
| AGCACTCACGGCGTCCAATC+GGG | + | chr7_3:2315318-2315337 | None:intergenic | 60.0% | |
| GAGCACTCACGGCGTCCAAT+CGG | + | chr7_3:2315319-2315338 | None:intergenic | 60.0% | |
| TGGAATCGTCGTTGGCGACC+GGG | - | chr7_3:2315402-2315421 | Msa1088950:CDS | 60.0% | |
| CTCCCCTTCCGGAGTCGAAA+GGG | + | chr7_3:2315531-2315550 | None:intergenic | 60.0% | |
| !! | GGTGGCGGATGATTATGGGC+TGG | - | chr7_3:2315571-2315590 | Msa1088950:CDS | 60.0% |
| ACTCACGGCGTCCAATCGGG+AGG | + | chr7_3:2315315-2315334 | None:intergenic | 65.0% | |
| CCTCCCCTTCCGGAGTCGAA+AGG | + | chr7_3:2315532-2315551 | None:intergenic | 65.0% | |
| CCTTTCGACTCCGGAAGGGG+AGG | - | chr7_3:2315529-2315548 | Msa1088950:CDS | 65.0% | |
| ACAGCATGAGCAGCCGCCAC+CGG | + | chr7_3:2315614-2315633 | None:intergenic | 65.0% | |
| GGCGGCTGCTCATGCTGTTC+CGG | - | chr7_3:2315616-2315635 | Msa1088950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2315098 | 2315715 | 2315098 | ID=Msa1088950;Name=Msa1088950 |
| chr7_3 | mRNA | 2315098 | 2315715 | 2315098 | ID=Msa1088950-mRNA-1;Parent=Msa1088950;Name=Msa1088950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|205 |
| chr7_3 | exon | 2315098 | 2315715 | 2315098 | ID=Msa1088950-mRNA-1:exon:943;Parent=Msa1088950-mRNA-1 |
| chr7_3 | CDS | 2315098 | 2315715 | 2315098 | ID=Msa1088950-mRNA-1:cds;Parent=Msa1088950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
