Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0555320 | RHN61862.1 | 93.944 | 677 | 40 | 1 | 1 | 677 | 102 | 777 | 0.0 | 1301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0555320 | A0A396I8C6 | 93.944 | 677 | 40 | 1 | 1 | 677 | 102 | 777 | 0.0 | 1301 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0074750 | Msa0555320 | 0.813069 | 3.084697e-51 | -8.615850e-47 |
Msa0082440 | Msa0555320 | 0.807550 | 4.786201e-50 | -8.615850e-47 |
Msa0124320 | Msa0555320 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
Msa0139670 | Msa0555320 | 0.814764 | 1.304694e-51 | -8.615850e-47 |
Msa0172080 | Msa0555320 | 0.807153 | 5.808229e-50 | -8.615850e-47 |
Msa0220730 | Msa0555320 | 0.846068 | 2.739467e-59 | -8.615850e-47 |
Msa0232340 | Msa0555320 | 0.803692 | 3.087458e-49 | -8.615850e-47 |
Msa0382370 | Msa0555320 | 0.818739 | 1.675039e-52 | -8.615850e-47 |
Msa0393430 | Msa0555320 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
Msa0403770 | Msa0555320 | 0.810525 | 1.103972e-50 | -8.615850e-47 |
Msa0432160 | Msa0555320 | 0.820968 | 5.181071e-53 | -8.615850e-47 |
Msa0468250 | Msa0555320 | 0.801772 | 7.691853e-49 | -8.615850e-47 |
Msa0476680 | Msa0555320 | 0.821016 | 5.051278e-53 | -8.615850e-47 |
Msa0299660 | Msa0555320 | 0.804073 | 2.573795e-49 | -8.615850e-47 |
Msa0358400 | Msa0555320 | 0.807804 | 4.225674e-50 | -8.615850e-47 |
Msa0483740 | Msa0555320 | 0.805793 | 1.124310e-49 | -8.615850e-47 |
Msa0516240 | Msa0555320 | 0.801335 | 9.454254e-49 | -8.615850e-47 |
Msa0521010 | Msa0555320 | 0.820709 | 5.944196e-53 | -8.615850e-47 |
Msa0549890 | Msa0555320 | 0.822628 | 2.139834e-53 | -8.615850e-47 |
Msa0555320 | Msa0709120 | 0.813408 | 2.599156e-51 | -8.615850e-47 |
Msa0555320 | Msa0711130 | 0.805493 | 1.299743e-49 | -8.615850e-47 |
Msa0555320 | Msa0756380 | 0.836327 | 9.984669e-57 | -8.615850e-47 |
Msa0555320 | Msa0789560 | 0.834978 | 2.192046e-56 | -8.615850e-47 |
Msa0555320 | Msa1006010 | -0.816521 | 5.298205e-52 | -8.615850e-47 |
Msa0555320 | Msa1188710 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
Msa0555320 | Msa1323690 | 0.815044 | 1.131107e-51 | -8.615850e-47 |
Msa0555320 | Msa1338400 | 0.808641 | 2.803443e-50 | -8.615850e-47 |
Msa0555320 | Msa1426910 | 0.813687 | 2.255972e-51 | -8.615850e-47 |
Msa0555320 | Msa1432780 | 0.816102 | 6.576084e-52 | -8.615850e-47 |
Msa0555320 | Msa1434040 | 0.837754 | 4.312354e-57 | -8.615850e-47 |
Msa0555320 | Msa1435260 | 0.803017 | 4.261015e-49 | -8.615850e-47 |
Msa0555320 | Msa1446080 | 0.801581 | 8.414863e-49 | -8.615850e-47 |
Msa0555320 | Msa1460320 | -0.814959 | 1.180940e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0555320 | MtrunA17_Chr4g0041221 | 93.944 | 677 | 40 | 1 | 1 | 677 | 102 | 777 | 0.0 | 1301 |
Msa0555320 | MtrunA17_Chr2g0325871 | 37.709 | 419 | 172 | 11 | 1 | 415 | 1 | 334 | 2.67e-61 | 209 |
Msa0555320 | MtrunA17_Chr2g0283911 | 36.061 | 330 | 183 | 12 | 7 | 319 | 1 | 319 | 1.44e-38 | 152 |
Msa0555320 | MtrunA17_Chr8g0379141 | 38.750 | 160 | 81 | 7 | 166 | 318 | 116 | 265 | 3.15e-15 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0555320 | AT2G30990.4 | 35.308 | 439 | 218 | 17 | 1 | 409 | 1 | 403 | 3.89e-53 | 193 |
Msa0555320 | AT2G30990.1 | 35.308 | 439 | 218 | 17 | 1 | 409 | 1 | 403 | 3.89e-53 | 193 |
Msa0555320 | AT2G30990.5 | 35.308 | 439 | 218 | 17 | 1 | 409 | 1 | 403 | 3.89e-53 | 193 |
Msa0555320 | AT2G30990.2 | 35.308 | 439 | 218 | 17 | 1 | 409 | 1 | 403 | 3.89e-53 | 193 |
Msa0555320 | AT2G30990.3 | 32.192 | 438 | 203 | 17 | 1 | 409 | 1 | 373 | 6.19e-42 | 160 |
Msa0555320 | AT1G29240.1 | 30.909 | 330 | 162 | 13 | 7 | 313 | 1 | 287 | 2.47e-23 | 105 |
Find 175 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTATGAGTGTTGCATCTT+TGG | 0.169527 | 4_1:-53207259 | Msa0555320:CDS |
GGAGACAGTGCTTCCTGTTC+TGG | 0.228938 | 4_1:+53207284 | None:intergenic |
ACTTATTACATTTGATTTAC+AGG | 0.240788 | 4_1:+53204932 | None:intergenic |
AGATTGTAGTATCATGTATT+TGG | 0.249799 | 4_1:+53207656 | None:intergenic |
CCTTCATCCTTAGGTCTTCC+AGG | 0.252703 | 4_1:+53207429 | None:intergenic |
AAGTAACAACACCATCTTAA+TGG | 0.254590 | 4_1:-53204881 | Msa0555320:three_prime_UTR |
GATATGTTCCTGCAATAATT+TGG | 0.269882 | 4_1:-53204857 | Msa0555320:three_prime_UTR |
TTTCCCGTAATTAGCAGTTC+TGG | 0.281772 | 4_1:+53206544 | None:intergenic |
CTTCTGAAAACAACAATAAA+AGG | 0.288262 | 4_1:-53207563 | Msa0555320:CDS |
TCAGGAACTGGCACCTATTC+CGG | 0.290868 | 4_1:-53205138 | Msa0555320:intron |
TCTATGAGTGTTGCATCTTT+GGG | 0.292307 | 4_1:-53207258 | Msa0555320:CDS |
TGTAATTTGCCTTCATCCTT+AGG | 0.299261 | 4_1:+53207420 | None:intergenic |
GAGCCAACATGCTGCAAAAT+TGG | 0.316947 | 4_1:-53205892 | Msa0555320:CDS |
TCCATCGAGAAACTTGAAAT+TGG | 0.321345 | 4_1:-53205940 | Msa0555320:CDS |
ATTGTAAATTCTTCAATTCA+TGG | 0.321510 | 4_1:-53206697 | Msa0555320:CDS |
CCTTTGCTCCAAATTATTGC+AGG | 0.327755 | 4_1:+53204849 | None:intergenic |
GAAGGATATTCTGTGTATTC+AGG | 0.331857 | 4_1:-53206495 | Msa0555320:CDS |
GTTTCTTGATTCATCTCTCT+TGG | 0.335145 | 4_1:-53206171 | Msa0555320:CDS |
TGAGACATCAGGACCGAAAA+TGG | 0.347763 | 4_1:-53206042 | Msa0555320:CDS |
TTTCCTCCCGGCCTGTATCT+TGG | 0.348671 | 4_1:+53206836 | None:intergenic |
ATGGATCAGGATTCTGAATT+AGG | 0.356593 | 4_1:+53205958 | None:intergenic |
GAAAATCAGGCTTCCGGAAT+AGG | 0.361107 | 4_1:+53205125 | None:intergenic |
AGTCCACTCTTAAGAAAATC+AGG | 0.369517 | 4_1:+53205112 | None:intergenic |
CCGTGAAGACATATTCTTAG+AGG | 0.377050 | 4_1:+53205647 | None:intergenic |
GGCTGTTCTTGTCTAACAAC+TGG | 0.380370 | 4_1:+53206940 | None:intergenic |
TCCATTCTTAATCCTTGTAA+TGG | 0.387501 | 4_1:+53206727 | None:intergenic |
TTGGAACTTAATTTATTGCT+TGG | 0.392310 | 4_1:+53205984 | None:intergenic |
CTCTTTAGTAAAGCCAGATT+GGG | 0.393054 | 4_1:+53206517 | None:intergenic |
TCTCTTTAGTAAAGCCAGAT+TGG | 0.400577 | 4_1:+53206516 | None:intergenic |
TTGGCTAGTGACTCGGAATT+CGG | 0.402123 | 4_1:-53205921 | Msa0555320:CDS |
CATACAAAAGGAACAGTTCC+AGG | 0.408376 | 4_1:+53207462 | None:intergenic |
GAGAGAGAGAAGAAGATAGA+AGG | 0.410034 | 4_1:+53208911 | None:intergenic |
GTAGTAATTTGACTAGCTTA+AGG | 0.411317 | 4_1:-53205827 | Msa0555320:CDS |
TTCCCGTAATTAGCAGTTCT+GGG | 0.413947 | 4_1:+53206545 | None:intergenic |
TAGTAATTTGACTAGCTTAA+GGG | 0.413953 | 4_1:-53205826 | Msa0555320:CDS |
CCATTTCTGATCCACGGGAC+GGG | 0.417760 | 4_1:+53206882 | None:intergenic |
AAGAAGATAGAAGGAAGAAA+AGG | 0.421207 | 4_1:+53208920 | None:intergenic |
GAAGCCATTGCCTTTGCTGC+AGG | 0.422409 | 4_1:+53206997 | None:intergenic |
GGATTCAGTGGTGCTGCATT+GGG | 0.423476 | 4_1:+53205585 | None:intergenic |
TTCCCAGAACTGCTAATTAC+GGG | 0.424954 | 4_1:-53206547 | Msa0555320:CDS |
TTTGTGTGGCCTAGCTTCAT+AGG | 0.428018 | 4_1:+53205765 | None:intergenic |
ATATGTATATAGAACCAAAA+AGG | 0.428163 | 4_1:+53205002 | None:intergenic |
GGGATTCAGTGGTGCTGCAT+TGG | 0.431704 | 4_1:+53205584 | None:intergenic |
TTCAAGTTTCTCGATGGATC+AGG | 0.435039 | 4_1:+53205945 | None:intergenic |
TCTTAAGAAAATCAGGCTTC+CGG | 0.435630 | 4_1:+53205119 | None:intergenic |
TTCTTCAATTCATGGAGTGC+AGG | 0.436876 | 4_1:-53206689 | Msa0555320:CDS |
CCACATTATGTCCAAGATAC+AGG | 0.438244 | 4_1:-53206847 | Msa0555320:CDS |
CCTCTAAGAATATGTCTTCA+CGG | 0.439104 | 4_1:-53205647 | Msa0555320:CDS |
TTTGTATGGGAGAACACTCC+TGG | 0.440473 | 4_1:-53207447 | Msa0555320:CDS |
TCTTTCTATAGTGTCTTCAA+TGG | 0.443479 | 4_1:-53206255 | Msa0555320:CDS |
AGGATTCTGAATTAGGTCAT+TGG | 0.446905 | 4_1:+53205965 | None:intergenic |
ACAAATTACCAGCCTCTGTC+AGG | 0.447434 | 4_1:-53206430 | Msa0555320:CDS |
TGGCCTAGCTTCATAGGAAA+CGG | 0.447912 | 4_1:+53205771 | None:intergenic |
CTTGACGCGTATTGAATATG+AGG | 0.450971 | 4_1:+53206967 | None:intergenic |
AGCTATGCACCGAAAGTTTG+TGG | 0.452408 | 4_1:-53206778 | Msa0555320:CDS |
TTCAACTCTGATTTGTAAGC+AGG | 0.452982 | 4_1:+53207504 | None:intergenic |
CCCGTCCCGTGGATCAGAAA+TGG | 0.454247 | 4_1:-53206882 | Msa0555320:CDS |
CTAAAGCTCCTTCAGAGTCT+TGG | 0.456429 | 4_1:-53205695 | Msa0555320:CDS |
TCAAGAAACACTGATCCTTT+CGG | 0.456432 | 4_1:+53206185 | None:intergenic |
CAAATAATTACATTGAGAAA+AGG | 0.456464 | 4_1:+53205056 | None:intergenic |
CAAGACTCTGAAGGAGCTTT+AGG | 0.457283 | 4_1:+53205696 | None:intergenic |
ACCCTTCCCGGTGGAAGCTT+AGG | 0.457512 | 4_1:+53207366 | None:intergenic |
CATTTCTGATCCACGGGACG+GGG | 0.458006 | 4_1:+53206883 | None:intergenic |
GTTGTTGTGGGTGGAAAACC+TGG | 0.460275 | 4_1:-53206215 | Msa0555320:CDS |
ATCCTTGTAATGGATTCAAA+AGG | 0.460354 | 4_1:+53206737 | None:intergenic |
GATCCTTTCGGCTGTAATCC+AGG | 0.461160 | 4_1:+53206197 | None:intergenic |
CTTCCCAGAACTGCTAATTA+CGG | 0.462134 | 4_1:-53206548 | Msa0555320:CDS |
TCTACTTTCCTTACCTGTCT+AGG | 0.463406 | 4_1:+53206919 | None:intergenic |
TCGGTTAGTCAGTCCAGAAC+AGG | 0.468701 | 4_1:-53207297 | Msa0555320:CDS |
TCATCCTCTCTGCGATCTGT+TGG | 0.470506 | 4_1:+53206317 | None:intergenic |
ATATGTAGATTCTGTACAAA+AGG | 0.476059 | 4_1:-53206360 | Msa0555320:CDS |
GGCCTAGCTTCATAGGAAAC+GGG | 0.476273 | 4_1:+53205772 | None:intergenic |
TCCTAAGCTTCCACCGGGAA+GGG | 0.476848 | 4_1:-53207367 | Msa0555320:CDS |
CTCCTAAGCTTCCACCGGGA+AGG | 0.486219 | 4_1:-53207368 | Msa0555320:CDS |
CTCAACGACAGGGCTTTCAC+AGG | 0.488800 | 4_1:+53206391 | None:intergenic |
TGTAAATCAAATGTAATAAG+TGG | 0.491990 | 4_1:-53204930 | Msa0555320:three_prime_UTR |
GCTGCATTGGGAGTTTGAGC+TGG | 0.493391 | 4_1:+53205597 | None:intergenic |
TCCATTACAAGGATTAAGAA+TGG | 0.494677 | 4_1:-53206728 | Msa0555320:CDS |
TGACTAACCGATGTGCCCTT+AGG | 0.495545 | 4_1:+53207309 | None:intergenic |
GCCAATTTCAAGTTTCTCGA+TGG | 0.497823 | 4_1:+53205939 | None:intergenic |
TTTCATCTTCACTTTCCTCC+CGG | 0.499488 | 4_1:+53206824 | None:intergenic |
GCCATTTCTGATCCACGGGA+CGG | 0.500051 | 4_1:+53206881 | None:intergenic |
AAGTTTGTGGACTGTTTCCT+CGG | 0.500178 | 4_1:-53206765 | Msa0555320:CDS |
AATCTAGTCCTGACAGAGGC+TGG | 0.501846 | 4_1:+53206422 | None:intergenic |
CTTGCCTGCAGCAAAGGCAA+TGG | 0.501982 | 4_1:-53207001 | Msa0555320:CDS |
CAATAAAAGGAAAACCGAAA+AGG | 0.504011 | 4_1:-53207550 | Msa0555320:CDS |
CATGATACTACAATCTCTGA+TGG | 0.506473 | 4_1:-53207649 | Msa0555320:CDS |
AGAAGGAAGAAAAGGAAGGA+AGG | 0.507626 | 4_1:+53208928 | None:intergenic |
GGAAACAGTCCACAAACTTT+CGG | 0.511770 | 4_1:+53206769 | None:intergenic |
TCACAGAAGAACTGTGAAAG+AGG | 0.511835 | 4_1:-53206650 | Msa0555320:intron |
CTTGAAATTGGCTAGTGACT+CGG | 0.512239 | 4_1:-53205928 | Msa0555320:CDS |
TACAAATCAGAGTTGAAGTC+AGG | 0.516938 | 4_1:-53207498 | Msa0555320:CDS |
GCTTAAGGGTGGTAGGTGGC+AGG | 0.520253 | 4_1:-53205812 | Msa0555320:CDS |
TGTCGCTCCTAAGCTTCCAC+CGG | 0.521378 | 4_1:-53207373 | Msa0555320:CDS |
TAGGTTCTTGCCTGCAGCAA+AGG | 0.522083 | 4_1:-53207007 | Msa0555320:CDS |
GTACTTCCTCTGAAGAAAGC+AGG | 0.525639 | 4_1:+53208864 | None:intergenic |
ATTTCCCACTTGGGATTCAG+TGG | 0.525685 | 4_1:+53205573 | None:intergenic |
CGTGGATCAGAAATGGCAAA+AGG | 0.529549 | 4_1:-53206875 | Msa0555320:CDS |
ATCAGAGTTGAAGTCAGGTC+CGG | 0.531712 | 4_1:-53207493 | Msa0555320:CDS |
TTCAACCCTGCTTTCTTCAG+AGG | 0.537692 | 4_1:-53208870 | Msa0555320:five_prime_UTR |
AGGGTTGAAAGTGTGAATCT+TGG | 0.538834 | 4_1:+53208884 | None:intergenic |
GGAGTGTTCTCCCATACAAA+AGG | 0.539753 | 4_1:+53207450 | None:intergenic |
TGCATCTTTGGGGAGTAAAG+AGG | 0.540984 | 4_1:-53207247 | Msa0555320:CDS |
TTGACTAGCTTAAGGGTGGT+AGG | 0.543787 | 4_1:-53205819 | Msa0555320:CDS |
TGGAGCTAAGCCCCGTCCCG+TGG | 0.544836 | 4_1:-53206893 | Msa0555320:CDS |
GGAACATATCACCATTAAGA+TGG | 0.545845 | 4_1:+53204870 | None:intergenic |
TCTTCAATTCATGGAGTGCA+GGG | 0.547029 | 4_1:-53206688 | Msa0555320:CDS |
AGATAGAAGGAAGAAAAGGA+AGG | 0.548317 | 4_1:+53208924 | None:intergenic |
AGATGCAACACTCATAGAGT+TGG | 0.553027 | 4_1:+53207263 | None:intergenic |
TCAGGTCCGGTGAGTAACCC+TGG | 0.553888 | 4_1:-53207480 | Msa0555320:CDS |
TCGCAGAGAGGATGATTTCG+AGG | 0.554562 | 4_1:-53206309 | Msa0555320:CDS |
CTCATATTCAATACGCGTCA+AGG | 0.556431 | 4_1:-53206966 | Msa0555320:CDS |
TCTGATGGAAGAAAAGCAGT+TGG | 0.562125 | 4_1:-53207634 | Msa0555320:CDS |
TTCTATAGTGTCTTCAATGG+AGG | 0.563606 | 4_1:-53206252 | Msa0555320:CDS |
ATAGGTCTCGTCCTCATGAT+CGG | 0.563852 | 4_1:+53207173 | None:intergenic |
CCTGCAATAATTTGGAGCAA+AGG | 0.564213 | 4_1:-53204849 | Msa0555320:three_prime_UTR |
ATCTGGCTTTACTAAAGAGA+AGG | 0.568991 | 4_1:-53206513 | Msa0555320:CDS |
TTGAGCTGGTGCATAAATGC+CGG | 0.570847 | 4_1:+53205611 | None:intergenic |
CCTGGAAGACCTAAGGATGA+AGG | 0.570959 | 4_1:-53207429 | Msa0555320:CDS |
CTATGAGTGTTGCATCTTTG+GGG | 0.570974 | 4_1:-53207257 | Msa0555320:CDS |
CAGGCTCGTGATTTCATGAT+CGG | 0.571093 | 4_1:-53207030 | Msa0555320:CDS |
CCAACATGCTGCAAAATTGG+TGG | 0.572688 | 4_1:-53205889 | Msa0555320:CDS |
GAAAAGGAAGGAAGGTTCGT+TGG | 0.572853 | 4_1:+53208936 | None:intergenic |
TAGACAAGAACAGCCTAGAC+AGG | 0.572998 | 4_1:-53206932 | Msa0555320:CDS |
CAAGGAAGTAACTTAGATCA+CGG | 0.574563 | 4_1:-53206071 | Msa0555320:CDS |
TGTATCAAGAGCGTCTACAT+AGG | 0.580096 | 4_1:+53207155 | None:intergenic |
TAGTAAACACATGGTTGTTG+TGG | 0.580318 | 4_1:-53206228 | Msa0555320:CDS |
ATTATGTCCAAGATACAGGC+CGG | 0.581300 | 4_1:-53206843 | Msa0555320:CDS |
GTGCATAAATGCCGGCAGCA+AGG | 0.583801 | 4_1:+53205619 | None:intergenic |
AAGAACAGCCTAGACAGGTA+AGG | 0.583937 | 4_1:-53206927 | Msa0555320:CDS |
TGCAGTGTGAGTGGTTTGAG+TGG | 0.586341 | 4_1:-53207102 | Msa0555320:CDS |
TTAGGCGAAGGAAGTGCAAG+AGG | 0.587499 | 4_1:+53205714 | None:intergenic |
TGGTTCTATATACATATAGG+TGG | 0.588758 | 4_1:-53204996 | Msa0555320:three_prime_UTR |
AACCCGTTTCCTATGAAGCT+AGG | 0.590273 | 4_1:-53205774 | Msa0555320:CDS |
TTATGACAGTAGAAATGAAG+TGG | 0.591569 | 4_1:-53207220 | Msa0555320:CDS |
ACATCAGGACCGAAAATGGC+CGG | 0.591872 | 4_1:-53206038 | Msa0555320:CDS |
TCTGAAGGAGCTTTAGGCGA+AGG | 0.592504 | 4_1:+53205702 | None:intergenic |
CGCTTAAGCCAAGACTCTGA+AGG | 0.593055 | 4_1:+53205687 | None:intergenic |
GAACACTCCTGGAAGACCTA+AGG | 0.594365 | 4_1:-53207436 | Msa0555320:CDS |
TTGTATATGATGTCTTTGTG+TGG | 0.595895 | 4_1:+53205751 | None:intergenic |
AGTAAACACATGGTTGTTGT+GGG | 0.598144 | 4_1:-53206227 | Msa0555320:CDS |
TACTTCCTCTGAAGAAAGCA+GGG | 0.599565 | 4_1:+53208865 | None:intergenic |
GCCCGCCTTACTGATAAAAG+TGG | 0.600899 | 4_1:+53207600 | None:intergenic |
TCACGGTCTAACCTTGCTGC+CGG | 0.604210 | 4_1:-53205630 | Msa0555320:CDS |
AAGTTCAGGTTCCGATCATG+AGG | 0.607728 | 4_1:-53207184 | Msa0555320:CDS |
ATGAAGGCAAATTACAAACA+AGG | 0.608238 | 4_1:-53207413 | Msa0555320:CDS |
GTGAGTGGTTTGAGTGGATG+CGG | 0.610267 | 4_1:-53207096 | Msa0555320:CDS |
CCTGTATCTTGGACATAATG+TGG | 0.610351 | 4_1:+53206847 | None:intergenic |
CTCGTGATTTCATGATCGGT+AGG | 0.613662 | 4_1:-53207026 | Msa0555320:CDS |
TTGTCGCAACCTCTTCGATG+TGG | 0.613863 | 4_1:+53206449 | None:intergenic |
AAACACATGGTTGTTGTGGG+TGG | 0.616251 | 4_1:-53206224 | Msa0555320:CDS |
AAAATAAATACAGAAAAGCA+AGG | 0.619633 | 4_1:-53206089 | Msa0555320:CDS |
TTCATGAACTGCAGTGTGAG+TGG | 0.619658 | 4_1:-53207111 | Msa0555320:CDS |
TTATGTCCAAGATACAGGCC+GGG | 0.619812 | 4_1:-53206842 | Msa0555320:CDS |
TAGACAGGTAAGGAAAGTAG+AGG | 0.624303 | 4_1:-53206917 | Msa0555320:CDS |
GACATTGATCCACATCGAAG+AGG | 0.633986 | 4_1:-53206458 | Msa0555320:CDS |
ACAGTTCCAGGGTTACTCAC+CGG | 0.634972 | 4_1:+53207474 | None:intergenic |
TGAAGGCAAATTACAAACAA+GGG | 0.641496 | 4_1:-53207412 | Msa0555320:CDS |
TAATTTGACTAGCTTAAGGG+TGG | 0.642230 | 4_1:-53205823 | Msa0555320:CDS |
TAAAATTCCTAAGGGCACAT+CGG | 0.644179 | 4_1:-53207316 | Msa0555320:CDS |
ATACAAAAGGAACAGTTCCA+GGG | 0.647853 | 4_1:+53207463 | None:intergenic |
ACTAGCTTAAGGGTGGTAGG+TGG | 0.651147 | 4_1:-53205816 | Msa0555320:CDS |
ATATTCTTAGAGGAAACTGT+AGG | 0.653854 | 4_1:+53205657 | None:intergenic |
AGACAGGTAAGGAAAGTAGA+GGG | 0.655341 | 4_1:-53206916 | Msa0555320:CDS |
AAACCTGGATTACAGCCGAA+AGG | 0.656751 | 4_1:-53206200 | Msa0555320:CDS |
ATTACAAGGATTAAGAATGG+AGG | 0.657642 | 4_1:-53206725 | Msa0555320:CDS |
GTCGCTCCTAAGCTTCCACC+GGG | 0.657863 | 4_1:-53207372 | Msa0555320:CDS |
CAGGTAAGGAAAGTAGAGGG+TGG | 0.661525 | 4_1:-53206913 | Msa0555320:CDS |
AGGTGGCAGGAAGAATGACT+CGG | 0.670561 | 4_1:-53205799 | Msa0555320:CDS |
GGAAGCTTAGGAGCGACAAG+AGG | 0.670890 | 4_1:+53207378 | None:intergenic |
AATGGAGGATAGTAAACACA+TGG | 0.693785 | 4_1:-53206237 | Msa0555320:CDS |
GGATTCAAAAGGCAGAACCG+AGG | 0.706295 | 4_1:+53206748 | None:intergenic |
TGTCCAAGATACAGGCCGGG+AGG | 0.726319 | 4_1:-53206839 | Msa0555320:CDS |
ATCAAATCTAGTCCTGACAG+AGG | 0.731734 | 4_1:+53206418 | None:intergenic |
GTGTCCAACAGATCGCAGAG+AGG | 0.765667 | 4_1:-53206321 | Msa0555320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAGATTGAAAATTTGTT+AGG | - | chr4_1:53205129-53205148 | Msa0555320:CDS | 15.0% |
!!! | ATTTTCTTAAACAATTCATA+AGG | - | chr4_1:53205467-53205486 | Msa0555320:intron | 15.0% |
!!! | TTTTCTTAAACAATTCATAA+GGG | - | chr4_1:53205468-53205487 | Msa0555320:intron | 15.0% |
!! | ATAATAAATCACACAATAAT+AGG | + | chr4_1:53205722-53205741 | None:intergenic | 15.0% |
!! | ATTATTGTGTGATTTATTAT+TGG | - | chr4_1:53205722-53205741 | Msa0555320:CDS | 15.0% |
!!! | TTGAAGATACAATTATTTTT+GGG | + | chr4_1:53208805-53208824 | None:intergenic | 15.0% |
!!! | TTTGAAGATACAATTATTTT+TGG | + | chr4_1:53208806-53208825 | None:intergenic | 15.0% |
!! | TTTCAATCAGAAAAGTTTAA+TGG | - | chr4_1:53204964-53204983 | Msa0555320:three_prime_UTR | 20.0% |
!! | AAAAATCAACTTAATCAAAC+AGG | + | chr4_1:53204998-53205017 | None:intergenic | 20.0% |
!!! | AAAATAGCTTAATCTAAAGT+AGG | + | chr4_1:53205225-53205244 | None:intergenic | 20.0% |
!!! | AGTTACTTACAATTTTGAAT+TGG | - | chr4_1:53205566-53205585 | Msa0555320:intron | 20.0% |
!!! | AGATTTTGATAAAATTCCTA+AGG | - | chr4_1:53206296-53206315 | Msa0555320:CDS | 20.0% |
!!! | GATTTTGATAAAATTCCTAA+GGG | - | chr4_1:53206297-53206316 | Msa0555320:CDS | 20.0% |
!! | ATTGTAAATTCTTCAATTCA+TGG | - | chr4_1:53206924-53206943 | Msa0555320:CDS | 20.0% |
!!! | CTTTTCTGTATTTATTTTGT+TGG | + | chr4_1:53207530-53207549 | None:intergenic | 20.0% |
!! | AAAATAAATACAGAAAAGCA+AGG | - | chr4_1:53207532-53207551 | Msa0555320:CDS | 20.0% |
!! | ACTTATTTGAGCTTATTTAT+TGG | - | chr4_1:53208163-53208182 | Msa0555320:intron | 20.0% |
!! | CAAATAATTACATTGAGAAA+AGG | + | chr4_1:53208568-53208587 | None:intergenic | 20.0% |
!! | ATATGTATATAGAACCAAAA+AGG | + | chr4_1:53208622-53208641 | None:intergenic | 20.0% |
!!! | TTTTGGTTCTATATACATAT+AGG | - | chr4_1:53208622-53208641 | Msa0555320:intron | 20.0% |
!!! | ACTTATTACATTTGATTTAC+AGG | + | chr4_1:53208692-53208711 | None:intergenic | 20.0% |
!! | TGTAAATCAAATGTAATAAG+TGG | - | chr4_1:53208691-53208710 | Msa0555320:intron | 20.0% |
!! | ACATAAAAGATGCGATTTTT+AGG | + | chr4_1:53204900-53204919 | None:intergenic | 25.0% |
!! | AAATCGCATCTTTTATGTTA+TGG | - | chr4_1:53204902-53204921 | Msa0555320:three_prime_UTR | 25.0% |
! | ACTTAATCAAACAGGAATAA+AGG | + | chr4_1:53204990-53205009 | None:intergenic | 25.0% |
! | ATTGGTTAAAGATAAGACTA+TGG | + | chr4_1:53205052-53205071 | None:intergenic | 25.0% |
! | AGAGTCAACAACAAAAAAAT+AGG | + | chr4_1:53205255-53205274 | None:intergenic | 25.0% |
!!! | TATTTTTTTGTTGTTGACTC+TGG | - | chr4_1:53205254-53205273 | Msa0555320:intron | 25.0% |
!! | AAAGTGTCATAATCAAGAAT+AGG | + | chr4_1:53205417-53205436 | None:intergenic | 25.0% |
!! | TTTTGAATTGGAACTTGATA+TGG | - | chr4_1:53205578-53205597 | Msa0555320:intron | 25.0% |
! | TTTGAATTGGAACTTGATAT+GGG | - | chr4_1:53205579-53205598 | Msa0555320:intron | 25.0% |
!! | ATGGAAATAATTTGAGTTAC+AGG | + | chr4_1:53205651-53205670 | None:intergenic | 25.0% |
! | TAATAGGAATATGATAGCAT+TGG | + | chr4_1:53205706-53205725 | None:intergenic | 25.0% |
!! | ATAGCTTGCAAGAATAATAT+TGG | + | chr4_1:53205782-53205801 | None:intergenic | 25.0% |
! | CGTCAATAATTAACTGTAAA+TGG | - | chr4_1:53205880-53205899 | Msa0555320:CDS | 25.0% |
! | AGATTGTAGTATCATGTATT+TGG | + | chr4_1:53205968-53205987 | None:intergenic | 25.0% |
!! | CTTCTGAAAACAACAATAAA+AGG | - | chr4_1:53206058-53206077 | Msa0555320:CDS | 25.0% |
! | TAATAACGAAAGCGAAAAAA+AGG | + | chr4_1:53207013-53207032 | None:intergenic | 25.0% |
! | ATATGTAGATTCTGTACAAA+AGG | - | chr4_1:53207261-53207280 | Msa0555320:CDS | 25.0% |
! | TTGGAACTTAATTTATTGCT+TGG | + | chr4_1:53207640-53207659 | None:intergenic | 25.0% |
!!! | TAGTAATTTGACTAGCTTAA+GGG | - | chr4_1:53207795-53207814 | Msa0555320:intron | 25.0% |
! | TTAATTCCTTTGATCATTCA+GGG | - | chr4_1:53208126-53208145 | Msa0555320:intron | 25.0% |
! | AAGCTATCATAGATAACTTA+CGG | + | chr4_1:53208266-53208285 | None:intergenic | 25.0% |
! | ATTAAGCTGTTTATCCAAAT+AGG | - | chr4_1:53208397-53208416 | Msa0555320:intron | 25.0% |
! | TTAAGCTGTTTATCCAAATA+GGG | - | chr4_1:53208398-53208417 | Msa0555320:intron | 25.0% |
AAGAAGATAGAAGGAAGAAA+AGG | + | chr4_1:53204704-53204723 | None:intergenic | 30.0% | |
!!! | GCTTCTTGTTTTTTGATGAA+TGG | - | chr4_1:53204833-53204852 | Msa0555320:three_prime_UTR | 30.0% |
! | TTTTTGATGAATGGTACAGT+TGG | - | chr4_1:53204842-53204861 | Msa0555320:three_prime_UTR | 30.0% |
! | TTTTGATGAATGGTACAGTT+GGG | - | chr4_1:53204843-53204862 | Msa0555320:three_prime_UTR | 30.0% |
! | GGTTTGTTTGTTTGTTTGAT+TGG | - | chr4_1:53204864-53204883 | Msa0555320:three_prime_UTR | 30.0% |
AAAACACACATCAGTTTCAT+TGG | + | chr4_1:53205070-53205089 | None:intergenic | 30.0% | |
ACTACTTTCAGATCAAACAT+TGG | - | chr4_1:53205163-53205182 | Msa0555320:intron | 30.0% | |
TTCAGATCAAACATTGGAAT+TGG | - | chr4_1:53205169-53205188 | Msa0555320:intron | 30.0% | |
TCAAACATTGGAATTGGAAT+TGG | - | chr4_1:53205175-53205194 | Msa0555320:intron | 30.0% | |
!!! | TAGGTGGAACAATTTTTTAC+CGG | + | chr4_1:53205313-53205332 | None:intergenic | 30.0% |
CTCTTGATAGAGAAATTGTT+CGG | + | chr4_1:53205355-53205374 | None:intergenic | 30.0% | |
GGCAAATGAAAGTAAGTAAT+TGG | + | chr4_1:53205396-53205415 | None:intergenic | 30.0% | |
! | AATTTTCTCATGCTTCCTAT+TGG | - | chr4_1:53205512-53205531 | Msa0555320:intron | 30.0% |
! | AGCATATGGTTTTTGTTCAA+TGG | - | chr4_1:53205609-53205628 | Msa0555320:CDS | 30.0% |
!!! | CCTATTAGCTTTTTACAAGA+TGG | + | chr4_1:53205670-53205689 | None:intergenic | 30.0% |
CCATCTTGTAAAAAGCTAAT+AGG | - | chr4_1:53205667-53205686 | Msa0555320:CDS | 30.0% | |
ACTCGTATAGAGTTTATTTG+TGG | - | chr4_1:53205905-53205924 | Msa0555320:CDS | 30.0% | |
CAATAAAAGGAAAACCGAAA+AGG | - | chr4_1:53206071-53206090 | Msa0555320:CDS | 30.0% | |
ATGAAGGCAAATTACAAACA+AGG | - | chr4_1:53206208-53206227 | Msa0555320:CDS | 30.0% | |
TGAAGGCAAATTACAAACAA+GGG | - | chr4_1:53206209-53206228 | Msa0555320:CDS | 30.0% | |
TTATGACAGTAGAAATGAAG+TGG | - | chr4_1:53206401-53206420 | Msa0555320:CDS | 30.0% | |
!! | ATCCTTGTAATGGATTCAAA+AGG | + | chr4_1:53206887-53206906 | None:intergenic | 30.0% |
TCCATTACAAGGATTAAGAA+TGG | - | chr4_1:53206893-53206912 | Msa0555320:CDS | 30.0% | |
TCCATTCTTAATCCTTGTAA+TGG | + | chr4_1:53206897-53206916 | None:intergenic | 30.0% | |
ATTACAAGGATTAAGAATGG+AGG | - | chr4_1:53206896-53206915 | Msa0555320:CDS | 30.0% | |
TCTTTCTATAGTGTCTTCAA+TGG | - | chr4_1:53207366-53207385 | Msa0555320:CDS | 30.0% | |
!! | GTAGTAATTTGACTAGCTTA+AGG | - | chr4_1:53207794-53207813 | Msa0555320:intron | 30.0% |
TTGTATATGATGTCTTTGTG+TGG | + | chr4_1:53207873-53207892 | None:intergenic | 30.0% | |
ATATTCTTAGAGGAAACTGT+AGG | + | chr4_1:53207967-53207986 | None:intergenic | 30.0% | |
GTTAAAACTAATGCTCATCA+CGG | - | chr4_1:53208075-53208094 | Msa0555320:intron | 30.0% | |
TTAAAACTAATGCTCATCAC+GGG | - | chr4_1:53208076-53208095 | Msa0555320:intron | 30.0% | |
GTTAATTCCTTTGATCATTC+AGG | - | chr4_1:53208125-53208144 | Msa0555320:intron | 30.0% | |
AGCTATCATAGATAACTTAC+GGG | + | chr4_1:53208265-53208284 | None:intergenic | 30.0% | |
TAGCTTATGAAAACAGTATG+TGG | - | chr4_1:53208280-53208299 | Msa0555320:intron | 30.0% | |
! | TTCCTTCAATTTTTCGTTTC+AGG | - | chr4_1:53208465-53208484 | Msa0555320:intron | 30.0% |
TTCCTGAAACGAAAAATTGA+AGG | + | chr4_1:53208470-53208489 | None:intergenic | 30.0% | |
! | TGGTTCTATATACATATAGG+TGG | - | chr4_1:53208625-53208644 | Msa0555320:intron | 30.0% |
AAGTAACAACACCATCTTAA+TGG | - | chr4_1:53208740-53208759 | Msa0555320:intron | 30.0% | |
GATATGTTCCTGCAATAATT+TGG | - | chr4_1:53208764-53208783 | Msa0555320:intron | 30.0% | |
AGATAGAAGGAAGAAAAGGA+AGG | + | chr4_1:53204700-53204719 | None:intergenic | 35.0% | |
!! | TGTTGTTGACTCTGGTAATT+CGG | - | chr4_1:53205262-53205281 | Msa0555320:intron | 35.0% |
GGTAAAAAATTGTTCCACCT+AGG | - | chr4_1:53205312-53205331 | Msa0555320:intron | 35.0% | |
AAAATTGTTCCACCTAGGAA+TGG | - | chr4_1:53205317-53205336 | Msa0555320:intron | 35.0% | |
! | TTCCTATTGGTTGAGAAGAA+TGG | - | chr4_1:53205525-53205544 | Msa0555320:intron | 35.0% |
TTCCATTCTTCTCAACCAAT+AGG | + | chr4_1:53205530-53205549 | None:intergenic | 35.0% | |
ATATGGGTCAAATCAGCATA+TGG | - | chr4_1:53205595-53205614 | Msa0555320:CDS | 35.0% | |
TGGATACTACCCTACAATAT+TGG | + | chr4_1:53205762-53205781 | None:intergenic | 35.0% | |
CATGATACTACAATCTCTGA+TGG | - | chr4_1:53205972-53205991 | Msa0555320:CDS | 35.0% | |
!!! | ATCAGCCACTTTTATCAGTA+AGG | - | chr4_1:53206016-53206035 | Msa0555320:CDS | 35.0% |
!! | TCGTTTTGATACTGCCTTTT+CGG | + | chr4_1:53206088-53206107 | None:intergenic | 35.0% |
! | TTCAACTCTGATTTGTAAGC+AGG | + | chr4_1:53206120-53206139 | None:intergenic | 35.0% |
TACAAATCAGAGTTGAAGTC+AGG | - | chr4_1:53206123-53206142 | Msa0555320:CDS | 35.0% | |
ATACAAAAGGAACAGTTCCA+GGG | + | chr4_1:53206161-53206180 | None:intergenic | 35.0% | |
! | TGGAACTGTTCCTTTTGTAT+GGG | - | chr4_1:53206161-53206180 | Msa0555320:CDS | 35.0% |
! | TGTAATTTGCCTTCATCCTT+AGG | + | chr4_1:53206204-53206223 | None:intergenic | 35.0% |
! | TAAAATTCCTAAGGGCACAT+CGG | - | chr4_1:53206305-53206324 | Msa0555320:CDS | 35.0% |
! | TCTATGAGTGTTGCATCTTT+GGG | - | chr4_1:53206363-53206382 | Msa0555320:CDS | 35.0% |
! | GAACCTGAACTTTCTTTTTC+GGG | + | chr4_1:53206429-53206448 | None:intergenic | 35.0% |
! | GGAACCTGAACTTTCTTTTT+CGG | + | chr4_1:53206430-53206449 | None:intergenic | 35.0% |
TCTGCTGAAAAACTTTCAGA+TGG | + | chr4_1:53206567-53206586 | None:intergenic | 35.0% | |
!! | AAGTTTTTCAGCAGATCAAC+AGG | - | chr4_1:53206572-53206591 | Msa0555320:intron | 35.0% |
! | TGCCTTTTGAATCCATTACA+AGG | - | chr4_1:53206882-53206901 | Msa0555320:CDS | 35.0% |
ACGAAAGCGAAAAAAAGGTT+GGG | + | chr4_1:53207008-53207027 | None:intergenic | 35.0% | |
AACGAAAGCGAAAAAAAGGT+TGG | + | chr4_1:53207009-53207028 | None:intergenic | 35.0% | |
CTCTTTAGTAAAGCCAGATT+GGG | + | chr4_1:53207107-53207126 | None:intergenic | 35.0% | |
TCTCTTTAGTAAAGCCAGAT+TGG | + | chr4_1:53207108-53207127 | None:intergenic | 35.0% | |
!! | ATCTGGCTTTACTAAAGAGA+AGG | - | chr4_1:53207108-53207127 | Msa0555320:CDS | 35.0% |
GAAGGATATTCTGTGTATTC+AGG | - | chr4_1:53207126-53207145 | Msa0555320:CDS | 35.0% | |
! | ATAGAGTTTTCTCAACGACA+GGG | + | chr4_1:53207243-53207262 | None:intergenic | 35.0% |
! | TATAGAGTTTTCTCAACGAC+AGG | + | chr4_1:53207244-53207263 | None:intergenic | 35.0% |
TTCTATAGTGTCTTCAATGG+AGG | - | chr4_1:53207369-53207388 | Msa0555320:CDS | 35.0% | |
AATGGAGGATAGTAAACACA+TGG | - | chr4_1:53207384-53207403 | Msa0555320:CDS | 35.0% | |
TAGTAAACACATGGTTGTTG+TGG | - | chr4_1:53207393-53207412 | Msa0555320:CDS | 35.0% | |
AGTAAACACATGGTTGTTGT+GGG | - | chr4_1:53207394-53207413 | Msa0555320:CDS | 35.0% | |
TCAAGAAACACTGATCCTTT+CGG | + | chr4_1:53207439-53207458 | None:intergenic | 35.0% | |
GTTTCTTGATTCATCTCTCT+TGG | - | chr4_1:53207450-53207469 | Msa0555320:CDS | 35.0% | |
CAAGGAAGTAACTTAGATCA+CGG | - | chr4_1:53207550-53207569 | Msa0555320:CDS | 35.0% | |
! | CGACTCTATTTTCTTATGTC+CGG | + | chr4_1:53207605-53207624 | None:intergenic | 35.0% |
AGGATTCTGAATTAGGTCAT+TGG | + | chr4_1:53207659-53207678 | None:intergenic | 35.0% | |
ATGGATCAGGATTCTGAATT+AGG | + | chr4_1:53207666-53207685 | None:intergenic | 35.0% | |
TCCATCGAGAAACTTGAAAT+TGG | - | chr4_1:53207681-53207700 | Msa0555320:intron | 35.0% | |
!! | TAATTTGACTAGCTTAAGGG+TGG | - | chr4_1:53207798-53207817 | Msa0555320:intron | 35.0% |
! | CCTCTAAGAATATGTCTTCA+CGG | - | chr4_1:53207974-53207993 | Msa0555320:intron | 35.0% |
TTAACGATCATTTCCCACTT+GGG | + | chr4_1:53208060-53208079 | None:intergenic | 35.0% | |
TTTAACGATCATTTCCCACT+TGG | + | chr4_1:53208061-53208080 | None:intergenic | 35.0% | |
! | CAATTTTTCGTTTCAGGAAC+TGG | - | chr4_1:53208471-53208490 | Msa0555320:intron | 35.0% |
TCTTAAGAAAATCAGGCTTC+CGG | + | chr4_1:53208505-53208524 | None:intergenic | 35.0% | |
! | AAGCCTGATTTTCTTAAGAG+TGG | - | chr4_1:53208506-53208525 | Msa0555320:intron | 35.0% |
AGTCCACTCTTAAGAAAATC+AGG | + | chr4_1:53208512-53208531 | None:intergenic | 35.0% | |
!!! | TCTCTTTGTTTTCATCCTAC+AGG | - | chr4_1:53208589-53208608 | Msa0555320:intron | 35.0% |
GGAACATATCACCATTAAGA+TGG | + | chr4_1:53208754-53208773 | None:intergenic | 35.0% | |
AGAAGGAAGAAAAGGAAGGA+AGG | + | chr4_1:53204696-53204715 | None:intergenic | 40.0% | |
GAGAGAGAGAAGAAGATAGA+AGG | + | chr4_1:53204713-53204732 | None:intergenic | 40.0% | |
! | AGGGTTGAAAGTGTGAATCT+TGG | + | chr4_1:53204740-53204759 | None:intergenic | 40.0% |
! | TACTTCCTCTGAAGAAAGCA+GGG | + | chr4_1:53204759-53204778 | None:intergenic | 40.0% |
CTCTTGTGTTGTGTTTGTGT+CGG | - | chr4_1:53204809-53204828 | Msa0555320:three_prime_UTR | 40.0% | |
ACCGGAATATACTTACCCTT+CGG | + | chr4_1:53205295-53205314 | None:intergenic | 40.0% | |
TAGAACTGAGTTCCATTCCT+AGG | + | chr4_1:53205332-53205351 | None:intergenic | 40.0% | |
GCATGAGAAAATTCACAAGC+AGG | + | chr4_1:53205505-53205524 | None:intergenic | 40.0% | |
TCCACGTAGTCCAATATTGT+AGG | - | chr4_1:53205749-53205768 | Msa0555320:CDS | 40.0% | |
CCACGTAGTCCAATATTGTA+GGG | - | chr4_1:53205750-53205769 | Msa0555320:CDS | 40.0% | |
TCTGATGGAAGAAAAGCAGT+TGG | - | chr4_1:53205987-53206006 | Msa0555320:CDS | 40.0% | |
!!! | AGCCACTTTTATCAGTAAGG+CGG | - | chr4_1:53206019-53206038 | Msa0555320:CDS | 40.0% |
CATACAAAAGGAACAGTTCC+AGG | + | chr4_1:53206162-53206181 | None:intergenic | 40.0% | |
! | CTGGAACTGTTCCTTTTGTA+TGG | - | chr4_1:53206160-53206179 | Msa0555320:CDS | 40.0% |
!!! | TCGACTTTTAAAACCCTTCC+CGG | + | chr4_1:53206270-53206289 | None:intergenic | 40.0% |
AGATGCAACACTCATAGAGT+TGG | + | chr4_1:53206361-53206380 | None:intergenic | 40.0% | |
! | CTCTATGAGTGTTGCATCTT+TGG | - | chr4_1:53206362-53206381 | Msa0555320:CDS | 40.0% |
! | CTATGAGTGTTGCATCTTTG+GGG | - | chr4_1:53206364-53206383 | Msa0555320:CDS | 40.0% |
GTTCCCGAAAAAGAAAGTTC+AGG | - | chr4_1:53206423-53206442 | Msa0555320:CDS | 40.0% | |
!! | TGTATCAAGAGCGTCTACAT+AGG | + | chr4_1:53206469-53206488 | None:intergenic | 40.0% |
CTTGACGCGTATTGAATATG+AGG | + | chr4_1:53206657-53206676 | None:intergenic | 40.0% | |
CTCATATTCAATACGCGTCA+AGG | - | chr4_1:53206655-53206674 | Msa0555320:CDS | 40.0% | |
TCTACTTTCCTTACCTGTCT+AGG | + | chr4_1:53206705-53206724 | None:intergenic | 40.0% | |
TAGACAGGTAAGGAAAGTAG+AGG | - | chr4_1:53206704-53206723 | Msa0555320:CDS | 40.0% | |
AGACAGGTAAGGAAAGTAGA+GGG | - | chr4_1:53206705-53206724 | Msa0555320:CDS | 40.0% | |
!! | TTTTGCCATTTCTGATCCAC+GGG | + | chr4_1:53206747-53206766 | None:intergenic | 40.0% |
!! | CTTTTGCCATTTCTGATCCA+CGG | + | chr4_1:53206748-53206767 | None:intergenic | 40.0% |
CCTGTATCTTGGACATAATG+TGG | + | chr4_1:53206777-53206796 | None:intergenic | 40.0% | |
CCACATTATGTCCAAGATAC+AGG | - | chr4_1:53206774-53206793 | Msa0555320:CDS | 40.0% | |
ATTATGTCCAAGATACAGGC+CGG | - | chr4_1:53206778-53206797 | Msa0555320:CDS | 40.0% | |
TTTCATCTTCACTTTCCTCC+CGG | + | chr4_1:53206800-53206819 | None:intergenic | 40.0% | |
GGAAACAGTCCACAAACTTT+CGG | + | chr4_1:53206855-53206874 | None:intergenic | 40.0% | |
! | AAGTTTGTGGACTGTTTCCT+CGG | - | chr4_1:53206856-53206875 | Msa0555320:CDS | 40.0% |
TTCTTCAATTCATGGAGTGC+AGG | - | chr4_1:53206932-53206951 | Msa0555320:CDS | 40.0% | |
TCTTCAATTCATGGAGTGCA+GGG | - | chr4_1:53206933-53206952 | Msa0555320:CDS | 40.0% | |
TCACAGAAGAACTGTGAAAG+AGG | - | chr4_1:53206971-53206990 | Msa0555320:CDS | 40.0% | |
CTTCCCAGAACTGCTAATTA+CGG | - | chr4_1:53207073-53207092 | Msa0555320:CDS | 40.0% | |
TTCCCAGAACTGCTAATTAC+GGG | - | chr4_1:53207074-53207093 | Msa0555320:CDS | 40.0% | |
TTCCCGTAATTAGCAGTTCT+GGG | + | chr4_1:53207079-53207098 | None:intergenic | 40.0% | |
TTTCCCGTAATTAGCAGTTC+TGG | + | chr4_1:53207080-53207099 | None:intergenic | 40.0% | |
ATCAAATCTAGTCCTGACAG+AGG | + | chr4_1:53207206-53207225 | None:intergenic | 40.0% | |
!! | TTCTTATGTCCGGCCATTTT+CGG | + | chr4_1:53207595-53207614 | None:intergenic | 40.0% |
! | TTCAAGTTTCTCGATGGATC+AGG | + | chr4_1:53207679-53207698 | None:intergenic | 40.0% |
!! | GCCAATTTCAAGTTTCTCGA+TGG | + | chr4_1:53207685-53207704 | None:intergenic | 40.0% |
CTTGAAATTGGCTAGTGACT+CGG | - | chr4_1:53207693-53207712 | Msa0555320:intron | 40.0% | |
CCGTGAAGACATATTCTTAG+AGG | + | chr4_1:53207977-53207996 | None:intergenic | 40.0% | |
!! | TGAGGTTTGCTGAGGTAATT+CGG | - | chr4_1:53208103-53208122 | Msa0555320:intron | 40.0% |
AACAGACCCTGAATGATCAA+AGG | + | chr4_1:53208135-53208154 | None:intergenic | 40.0% | |
TTGATCATTCAGGGTCTGTT+TGG | - | chr4_1:53208135-53208154 | Msa0555320:intron | 40.0% | |
AGTTTCACTAAGGCCCTATT+TGG | + | chr4_1:53208414-53208433 | None:intergenic | 40.0% | |
GAGCGATAACAGTTTCACTA+AGG | + | chr4_1:53208424-53208443 | None:intergenic | 40.0% | |
TGAAACTGTTATCGCTCATG+TGG | - | chr4_1:53208427-53208446 | Msa0555320:intron | 40.0% | |
CAAAAAGGAGATCAACCTGT+AGG | + | chr4_1:53208607-53208626 | None:intergenic | 40.0% | |
!!! | CTACAGGTTGATCTCCTTTT+TGG | - | chr4_1:53208605-53208624 | Msa0555320:intron | 40.0% |
CCTTTGCTCCAAATTATTGC+AGG | + | chr4_1:53208775-53208794 | None:intergenic | 40.0% | |
! | CCTGCAATAATTTGGAGCAA+AGG | - | chr4_1:53208772-53208791 | Msa0555320:intron | 40.0% |
GAAAAGGAAGGAAGGTTCGT+TGG | + | chr4_1:53204688-53204707 | None:intergenic | 45.0% | |
TTCAACCCTGCTTTCTTCAG+AGG | - | chr4_1:53204751-53204770 | Msa0555320:intron | 45.0% | |
! | GTACTTCCTCTGAAGAAAGC+AGG | + | chr4_1:53204760-53204779 | None:intergenic | 45.0% |
GACTCTGGTAATTCGGAGTT+TGG | - | chr4_1:53205269-53205288 | Msa0555320:intron | 45.0% | |
TAATTCGGAGTTTGGCCGAA+GGG | - | chr4_1:53205277-53205296 | Msa0555320:intron | 45.0% | |
GCCGAAGGGTAAGTATATTC+CGG | - | chr4_1:53205291-53205310 | Msa0555320:intron | 45.0% | |
AACTGAGTTCCATTCCTAGG+TGG | + | chr4_1:53205329-53205348 | None:intergenic | 45.0% | |
CCCTACAATATTGGACTACG+TGG | + | chr4_1:53205753-53205772 | None:intergenic | 45.0% | |
!!! | GCCACTTTTATCAGTAAGGC+GGG | - | chr4_1:53206020-53206039 | Msa0555320:CDS | 45.0% |
ATCAGAGTTGAAGTCAGGTC+CGG | - | chr4_1:53206128-53206147 | Msa0555320:CDS | 45.0% | |
! | GGAGTGTTCTCCCATACAAA+AGG | + | chr4_1:53206174-53206193 | None:intergenic | 45.0% |
TTTGTATGGGAGAACACTCC+TGG | - | chr4_1:53206174-53206193 | Msa0555320:CDS | 45.0% | |
!!! | ACTTTTAAAACCCTTCCCGG+TGG | + | chr4_1:53206267-53206286 | None:intergenic | 45.0% |
! | TGCATCTTTGGGGAGTAAAG+AGG | - | chr4_1:53206374-53206393 | Msa0555320:CDS | 45.0% |
! | AAGTTCAGGTTCCGATCATG+AGG | - | chr4_1:53206437-53206456 | Msa0555320:CDS | 45.0% |
ATAGGTCTCGTCCTCATGAT+CGG | + | chr4_1:53206451-53206470 | None:intergenic | 45.0% | |
TTCATGAACTGCAGTGTGAG+TGG | - | chr4_1:53206510-53206529 | Msa0555320:CDS | 45.0% | |
CAGGCTCGTGATTTCATGAT+CGG | - | chr4_1:53206591-53206610 | Msa0555320:intron | 45.0% | |
CTCGTGATTTCATGATCGGT+AGG | - | chr4_1:53206595-53206614 | Msa0555320:intron | 45.0% | |
GGCTGTTCTTGTCTAACAAC+TGG | + | chr4_1:53206684-53206703 | None:intergenic | 45.0% | |
TAGACAAGAACAGCCTAGAC+AGG | - | chr4_1:53206689-53206708 | Msa0555320:CDS | 45.0% | |
AAGAACAGCCTAGACAGGTA+AGG | - | chr4_1:53206694-53206713 | Msa0555320:CDS | 45.0% | |
CGTGGATCAGAAATGGCAAA+AGG | - | chr4_1:53206746-53206765 | Msa0555320:CDS | 45.0% | |
TTATGTCCAAGATACAGGCC+GGG | - | chr4_1:53206779-53206798 | Msa0555320:CDS | 45.0% | |
AGCTATGCACCGAAAGTTTG+TGG | - | chr4_1:53206843-53206862 | Msa0555320:CDS | 45.0% | |
TACGGGAAAAAGTCCCAATC+TGG | - | chr4_1:53207091-53207110 | Msa0555320:CDS | 45.0% | |
GACATTGATCCACATCGAAG+AGG | - | chr4_1:53207163-53207182 | Msa0555320:CDS | 45.0% | |
ACAAATTACCAGCCTCTGTC+AGG | - | chr4_1:53207191-53207210 | Msa0555320:CDS | 45.0% | |
AAACACATGGTTGTTGTGGG+TGG | - | chr4_1:53207397-53207416 | Msa0555320:CDS | 45.0% | |
AAACCTGGATTACAGCCGAA+AGG | - | chr4_1:53207421-53207440 | Msa0555320:CDS | 45.0% | |
!! | CACGGTTTTAGTGAGACATC+AGG | - | chr4_1:53207568-53207587 | Msa0555320:CDS | 45.0% |
TGAGACATCAGGACCGAAAA+TGG | - | chr4_1:53207579-53207598 | Msa0555320:CDS | 45.0% | |
! | TTGGCTAGTGACTCGGAATT+CGG | - | chr4_1:53207700-53207719 | Msa0555320:intron | 45.0% |
GAGCCAACATGCTGCAAAAT+TGG | - | chr4_1:53207729-53207748 | Msa0555320:intron | 45.0% | |
! | CCACCAATTTTGCAGCATGT+TGG | + | chr4_1:53207735-53207754 | None:intergenic | 45.0% |
CCAACATGCTGCAAAATTGG+TGG | - | chr4_1:53207732-53207751 | Msa0555320:intron | 45.0% | |
!! | TTGACTAGCTTAAGGGTGGT+AGG | - | chr4_1:53207802-53207821 | Msa0555320:intron | 45.0% |
AACCCGTTTCCTATGAAGCT+AGG | - | chr4_1:53207847-53207866 | Msa0555320:intron | 45.0% | |
TGGCCTAGCTTCATAGGAAA+CGG | + | chr4_1:53207853-53207872 | None:intergenic | 45.0% | |
TTTGTGTGGCCTAGCTTCAT+AGG | + | chr4_1:53207859-53207878 | None:intergenic | 45.0% | |
! | CAAGACTCTGAAGGAGCTTT+AGG | + | chr4_1:53207928-53207947 | None:intergenic | 45.0% |
CTAAAGCTCCTTCAGAGTCT+TGG | - | chr4_1:53207926-53207945 | Msa0555320:intron | 45.0% | |
TTGAGCTGGTGCATAAATGC+CGG | + | chr4_1:53208013-53208032 | None:intergenic | 45.0% | |
ATTTCCCACTTGGGATTCAG+TGG | + | chr4_1:53208051-53208070 | None:intergenic | 45.0% | |
ACTGTTATCGCTCATGTGGT+TGG | - | chr4_1:53208431-53208450 | Msa0555320:intron | 45.0% | |
GAAAATCAGGCTTCCGGAAT+AGG | + | chr4_1:53208499-53208518 | None:intergenic | 45.0% | |
GTAATTCGGAGTTTGGCCGA+AGG | - | chr4_1:53205276-53205295 | Msa0555320:intron | 50.0% | |
GCCCGCCTTACTGATAAAAG+TGG | + | chr4_1:53206024-53206043 | None:intergenic | 50.0% | |
ACAGTTCCAGGGTTACTCAC+CGG | + | chr4_1:53206150-53206169 | None:intergenic | 50.0% | |
GAACACTCCTGGAAGACCTA+AGG | - | chr4_1:53206185-53206204 | Msa0555320:CDS | 50.0% | |
CCTTCATCCTTAGGTCTTCC+AGG | + | chr4_1:53206195-53206214 | None:intergenic | 50.0% | |
CCTGGAAGACCTAAGGATGA+AGG | - | chr4_1:53206192-53206211 | Msa0555320:CDS | 50.0% | |
TGACTAACCGATGTGCCCTT+AGG | + | chr4_1:53206315-53206334 | None:intergenic | 50.0% | |
! | TCGGTTAGTCAGTCCAGAAC+AGG | - | chr4_1:53206324-53206343 | Msa0555320:CDS | 50.0% |
TGCAGTGTGAGTGGTTTGAG+TGG | - | chr4_1:53206519-53206538 | Msa0555320:CDS | 50.0% | |
GTGAGTGGTTTGAGTGGATG+CGG | - | chr4_1:53206525-53206544 | Msa0555320:CDS | 50.0% | |
TAGGTTCTTGCCTGCAGCAA+AGG | - | chr4_1:53206614-53206633 | Msa0555320:intron | 50.0% | |
CAGGTAAGGAAAGTAGAGGG+TGG | - | chr4_1:53206708-53206727 | Msa0555320:CDS | 50.0% | |
GGATTCAAAAGGCAGAACCG+AGG | + | chr4_1:53206876-53206895 | None:intergenic | 50.0% | |
!! | TAGCAGTTCTGGGAAGCTGT+GGG | + | chr4_1:53207069-53207088 | None:intergenic | 50.0% |
!! | TTAGCAGTTCTGGGAAGCTG+TGG | + | chr4_1:53207070-53207089 | None:intergenic | 50.0% |
TTGTCGCAACCTCTTCGATG+TGG | + | chr4_1:53207175-53207194 | None:intergenic | 50.0% | |
AATCTAGTCCTGACAGAGGC+TGG | + | chr4_1:53207202-53207221 | None:intergenic | 50.0% | |
TCATCCTCTCTGCGATCTGT+TGG | + | chr4_1:53207307-53207326 | None:intergenic | 50.0% | |
TCGCAGAGAGGATGATTTCG+AGG | - | chr4_1:53207312-53207331 | Msa0555320:CDS | 50.0% | |
GTTGTTGTGGGTGGAAAACC+TGG | - | chr4_1:53207406-53207425 | Msa0555320:CDS | 50.0% | |
GATCCTTTCGGCTGTAATCC+AGG | + | chr4_1:53207427-53207446 | None:intergenic | 50.0% | |
ACATCAGGACCGAAAATGGC+CGG | - | chr4_1:53207583-53207602 | Msa0555320:CDS | 50.0% | |
! | ACTAGCTTAAGGGTGGTAGG+TGG | - | chr4_1:53207805-53207824 | Msa0555320:intron | 50.0% |
AGGTGGCAGGAAGAATGACT+CGG | - | chr4_1:53207822-53207841 | Msa0555320:intron | 50.0% | |
GGCCTAGCTTCATAGGAAAC+GGG | + | chr4_1:53207852-53207871 | None:intergenic | 50.0% | |
! | TTAGGCGAAGGAAGTGCAAG+AGG | + | chr4_1:53207910-53207929 | None:intergenic | 50.0% |
!! | TCTGAAGGAGCTTTAGGCGA+AGG | + | chr4_1:53207922-53207941 | None:intergenic | 50.0% |
CGCTTAAGCCAAGACTCTGA+AGG | + | chr4_1:53207937-53207956 | None:intergenic | 50.0% | |
!! | GGATTCAGTGGTGCTGCATT+GGG | + | chr4_1:53208039-53208058 | None:intergenic | 50.0% |
AGCACCACTGAATCCCAAGT+GGG | - | chr4_1:53208044-53208063 | Msa0555320:intron | 50.0% | |
ATGCTCATCACGGGCATATG+AGG | - | chr4_1:53208085-53208104 | Msa0555320:intron | 50.0% | |
TCAGGAACTGGCACCTATTC+CGG | - | chr4_1:53208483-53208502 | Msa0555320:intron | 50.0% | |
GGAAGCTTAGGAGCGACAAG+AGG | + | chr4_1:53206246-53206265 | None:intergenic | 55.0% | |
TGTCGCTCCTAAGCTTCCAC+CGG | - | chr4_1:53206248-53206267 | Msa0555320:CDS | 55.0% | |
TCCTAAGCTTCCACCGGGAA+GGG | - | chr4_1:53206254-53206273 | Msa0555320:CDS | 55.0% | |
GGAGACAGTGCTTCCTGTTC+TGG | + | chr4_1:53206340-53206359 | None:intergenic | 55.0% | |
CTTGCCTGCAGCAAAGGCAA+TGG | - | chr4_1:53206620-53206639 | Msa0555320:intron | 55.0% | |
GAAGCCATTGCCTTTGCTGC+AGG | + | chr4_1:53206627-53206646 | None:intergenic | 55.0% | |
CATTTCTGATCCACGGGACG+GGG | + | chr4_1:53206741-53206760 | None:intergenic | 55.0% | |
CCATTTCTGATCCACGGGAC+GGG | + | chr4_1:53206742-53206761 | None:intergenic | 55.0% | |
GCCATTTCTGATCCACGGGA+CGG | + | chr4_1:53206743-53206762 | None:intergenic | 55.0% | |
TTTCCTCCCGGCCTGTATCT+TGG | + | chr4_1:53206788-53206807 | None:intergenic | 55.0% | |
!! | AGCAGTTCTGGGAAGCTGTG+GGG | + | chr4_1:53207068-53207087 | None:intergenic | 55.0% |
CTCAACGACAGGGCTTTCAC+AGG | + | chr4_1:53207233-53207252 | None:intergenic | 55.0% | |
GTGTCCAACAGATCGCAGAG+AGG | - | chr4_1:53207300-53207319 | Msa0555320:CDS | 55.0% | |
TCACGGTCTAACCTTGCTGC+CGG | - | chr4_1:53207991-53208010 | Msa0555320:intron | 55.0% | |
GTGCATAAATGCCGGCAGCA+AGG | + | chr4_1:53208005-53208024 | None:intergenic | 55.0% | |
GCTGCATTGGGAGTTTGAGC+TGG | + | chr4_1:53208027-53208046 | None:intergenic | 55.0% | |
!! | GGGATTCAGTGGTGCTGCAT+TGG | + | chr4_1:53208040-53208059 | None:intergenic | 55.0% |
CAGCACCACTGAATCCCAAG+TGG | - | chr4_1:53208043-53208062 | Msa0555320:intron | 55.0% | |
!! | CGGGCATATGAGGTTTGCTG+AGG | - | chr4_1:53208095-53208114 | Msa0555320:intron | 55.0% |
TCAGGTCCGGTGAGTAACCC+TGG | - | chr4_1:53206141-53206160 | Msa0555320:CDS | 60.0% | |
GTCGCTCCTAAGCTTCCACC+GGG | - | chr4_1:53206249-53206268 | Msa0555320:CDS | 60.0% | |
CTCCTAAGCTTCCACCGGGA+AGG | - | chr4_1:53206253-53206272 | Msa0555320:CDS | 60.0% | |
ACCCTTCCCGGTGGAAGCTT+AGG | + | chr4_1:53206258-53206277 | None:intergenic | 60.0% | |
CCCGTCCCGTGGATCAGAAA+TGG | - | chr4_1:53206739-53206758 | Msa0555320:CDS | 60.0% | |
TGTCCAAGATACAGGCCGGG+AGG | - | chr4_1:53206782-53206801 | Msa0555320:CDS | 60.0% | |
GCTTAAGGGTGGTAGGTGGC+AGG | - | chr4_1:53207809-53207828 | Msa0555320:intron | 60.0% | |
TGGAGCTAAGCCCCGTCCCG+TGG | - | chr4_1:53206728-53206747 | Msa0555320:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 53204663 | 53208980 | 53204663 | ID=Msa0555320;Name=Msa0555320 |
chr4_1 | mRNA | 53204663 | 53208980 | 53204663 | ID=Msa0555320-mRNA-1;Parent=Msa0555320;Name=Msa0555320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|0.75|0.8|1|0.5|0.2|5|336|688 |
chr4_1 | exon | 53204663 | 53204698 | 53204663 | ID=Msa0555320-mRNA-1:exon:15468;Parent=Msa0555320-mRNA-1 |
chr4_1 | exon | 53204799 | 53205156 | 53204799 | ID=Msa0555320-mRNA-1:exon:15467;Parent=Msa0555320-mRNA-1 |
chr4_1 | exon | 53205582 | 53206570 | 53205582 | ID=Msa0555320-mRNA-1:exon:15466;Parent=Msa0555320-mRNA-1 |
chr4_1 | exon | 53206651 | 53207681 | 53206651 | ID=Msa0555320-mRNA-1:exon:15465;Parent=Msa0555320-mRNA-1 |
chr4_1 | exon | 53208868 | 53208980 | 53208868 | ID=Msa0555320-mRNA-1:exon:15464;Parent=Msa0555320-mRNA-1 |
chr4_1 | five_prime_UTR | 53208868 | 53208980 | 53208868 | ID=Msa0555320-mRNA-1:five_prime_utr;Parent=Msa0555320-mRNA-1 |
chr4_1 | five_prime_UTR | 53207671 | 53207681 | 53207671 | ID=Msa0555320-mRNA-1:five_prime_utr;Parent=Msa0555320-mRNA-1 |
chr4_1 | CDS | 53206651 | 53207670 | 53206651 | ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1 |
chr4_1 | CDS | 53205582 | 53206570 | 53205582 | ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1 |
chr4_1 | CDS | 53205099 | 53205156 | 53205099 | ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1 |
chr4_1 | three_prime_UTR | 53204799 | 53205098 | 53204799 | ID=Msa0555320-mRNA-1:three_prime_utr;Parent=Msa0555320-mRNA-1 |
chr4_1 | three_prime_UTR | 53204663 | 53204698 | 53204663 | ID=Msa0555320-mRNA-1:three_prime_utr;Parent=Msa0555320-mRNA-1 |
Gene Sequence |
Protein sequence |