AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555320 MtrunA17_Chr4g0041221 93.944 677 40 1 1 677 102 777 0.0 1301
Msa0555320 MtrunA17_Chr2g0325871 37.709 419 172 11 1 415 1 334 2.67e-61 209
Msa0555320 MtrunA17_Chr2g0283911 36.061 330 183 12 7 319 1 319 1.44e-38 152
Msa0555320 MtrunA17_Chr8g0379141 38.750 160 81 7 166 318 116 265 3.15e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555320 AT2G30990.4 35.308 439 218 17 1 409 1 403 3.89e-53 193
Msa0555320 AT2G30990.1 35.308 439 218 17 1 409 1 403 3.89e-53 193
Msa0555320 AT2G30990.5 35.308 439 218 17 1 409 1 403 3.89e-53 193
Msa0555320 AT2G30990.2 35.308 439 218 17 1 409 1 403 3.89e-53 193
Msa0555320 AT2G30990.3 32.192 438 203 17 1 409 1 373 6.19e-42 160
Msa0555320 AT1G29240.1 30.909 330 162 13 7 313 1 287 2.47e-23 105

Find 175 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATGAGTGTTGCATCTT+TGG 0.169527 4_1:-53207259 Msa0555320:CDS
GGAGACAGTGCTTCCTGTTC+TGG 0.228938 4_1:+53207284 None:intergenic
ACTTATTACATTTGATTTAC+AGG 0.240788 4_1:+53204932 None:intergenic
AGATTGTAGTATCATGTATT+TGG 0.249799 4_1:+53207656 None:intergenic
CCTTCATCCTTAGGTCTTCC+AGG 0.252703 4_1:+53207429 None:intergenic
AAGTAACAACACCATCTTAA+TGG 0.254590 4_1:-53204881 Msa0555320:three_prime_UTR
GATATGTTCCTGCAATAATT+TGG 0.269882 4_1:-53204857 Msa0555320:three_prime_UTR
TTTCCCGTAATTAGCAGTTC+TGG 0.281772 4_1:+53206544 None:intergenic
CTTCTGAAAACAACAATAAA+AGG 0.288262 4_1:-53207563 Msa0555320:CDS
TCAGGAACTGGCACCTATTC+CGG 0.290868 4_1:-53205138 Msa0555320:intron
TCTATGAGTGTTGCATCTTT+GGG 0.292307 4_1:-53207258 Msa0555320:CDS
TGTAATTTGCCTTCATCCTT+AGG 0.299261 4_1:+53207420 None:intergenic
GAGCCAACATGCTGCAAAAT+TGG 0.316947 4_1:-53205892 Msa0555320:CDS
TCCATCGAGAAACTTGAAAT+TGG 0.321345 4_1:-53205940 Msa0555320:CDS
ATTGTAAATTCTTCAATTCA+TGG 0.321510 4_1:-53206697 Msa0555320:CDS
CCTTTGCTCCAAATTATTGC+AGG 0.327755 4_1:+53204849 None:intergenic
GAAGGATATTCTGTGTATTC+AGG 0.331857 4_1:-53206495 Msa0555320:CDS
GTTTCTTGATTCATCTCTCT+TGG 0.335145 4_1:-53206171 Msa0555320:CDS
TGAGACATCAGGACCGAAAA+TGG 0.347763 4_1:-53206042 Msa0555320:CDS
TTTCCTCCCGGCCTGTATCT+TGG 0.348671 4_1:+53206836 None:intergenic
ATGGATCAGGATTCTGAATT+AGG 0.356593 4_1:+53205958 None:intergenic
GAAAATCAGGCTTCCGGAAT+AGG 0.361107 4_1:+53205125 None:intergenic
AGTCCACTCTTAAGAAAATC+AGG 0.369517 4_1:+53205112 None:intergenic
CCGTGAAGACATATTCTTAG+AGG 0.377050 4_1:+53205647 None:intergenic
GGCTGTTCTTGTCTAACAAC+TGG 0.380370 4_1:+53206940 None:intergenic
TCCATTCTTAATCCTTGTAA+TGG 0.387501 4_1:+53206727 None:intergenic
TTGGAACTTAATTTATTGCT+TGG 0.392310 4_1:+53205984 None:intergenic
CTCTTTAGTAAAGCCAGATT+GGG 0.393054 4_1:+53206517 None:intergenic
TCTCTTTAGTAAAGCCAGAT+TGG 0.400577 4_1:+53206516 None:intergenic
TTGGCTAGTGACTCGGAATT+CGG 0.402123 4_1:-53205921 Msa0555320:CDS
CATACAAAAGGAACAGTTCC+AGG 0.408376 4_1:+53207462 None:intergenic
GAGAGAGAGAAGAAGATAGA+AGG 0.410034 4_1:+53208911 None:intergenic
GTAGTAATTTGACTAGCTTA+AGG 0.411317 4_1:-53205827 Msa0555320:CDS
TTCCCGTAATTAGCAGTTCT+GGG 0.413947 4_1:+53206545 None:intergenic
TAGTAATTTGACTAGCTTAA+GGG 0.413953 4_1:-53205826 Msa0555320:CDS
CCATTTCTGATCCACGGGAC+GGG 0.417760 4_1:+53206882 None:intergenic
AAGAAGATAGAAGGAAGAAA+AGG 0.421207 4_1:+53208920 None:intergenic
GAAGCCATTGCCTTTGCTGC+AGG 0.422409 4_1:+53206997 None:intergenic
GGATTCAGTGGTGCTGCATT+GGG 0.423476 4_1:+53205585 None:intergenic
TTCCCAGAACTGCTAATTAC+GGG 0.424954 4_1:-53206547 Msa0555320:CDS
TTTGTGTGGCCTAGCTTCAT+AGG 0.428018 4_1:+53205765 None:intergenic
ATATGTATATAGAACCAAAA+AGG 0.428163 4_1:+53205002 None:intergenic
GGGATTCAGTGGTGCTGCAT+TGG 0.431704 4_1:+53205584 None:intergenic
TTCAAGTTTCTCGATGGATC+AGG 0.435039 4_1:+53205945 None:intergenic
TCTTAAGAAAATCAGGCTTC+CGG 0.435630 4_1:+53205119 None:intergenic
TTCTTCAATTCATGGAGTGC+AGG 0.436876 4_1:-53206689 Msa0555320:CDS
CCACATTATGTCCAAGATAC+AGG 0.438244 4_1:-53206847 Msa0555320:CDS
CCTCTAAGAATATGTCTTCA+CGG 0.439104 4_1:-53205647 Msa0555320:CDS
TTTGTATGGGAGAACACTCC+TGG 0.440473 4_1:-53207447 Msa0555320:CDS
TCTTTCTATAGTGTCTTCAA+TGG 0.443479 4_1:-53206255 Msa0555320:CDS
AGGATTCTGAATTAGGTCAT+TGG 0.446905 4_1:+53205965 None:intergenic
ACAAATTACCAGCCTCTGTC+AGG 0.447434 4_1:-53206430 Msa0555320:CDS
TGGCCTAGCTTCATAGGAAA+CGG 0.447912 4_1:+53205771 None:intergenic
CTTGACGCGTATTGAATATG+AGG 0.450971 4_1:+53206967 None:intergenic
AGCTATGCACCGAAAGTTTG+TGG 0.452408 4_1:-53206778 Msa0555320:CDS
TTCAACTCTGATTTGTAAGC+AGG 0.452982 4_1:+53207504 None:intergenic
CCCGTCCCGTGGATCAGAAA+TGG 0.454247 4_1:-53206882 Msa0555320:CDS
CTAAAGCTCCTTCAGAGTCT+TGG 0.456429 4_1:-53205695 Msa0555320:CDS
TCAAGAAACACTGATCCTTT+CGG 0.456432 4_1:+53206185 None:intergenic
CAAATAATTACATTGAGAAA+AGG 0.456464 4_1:+53205056 None:intergenic
CAAGACTCTGAAGGAGCTTT+AGG 0.457283 4_1:+53205696 None:intergenic
ACCCTTCCCGGTGGAAGCTT+AGG 0.457512 4_1:+53207366 None:intergenic
CATTTCTGATCCACGGGACG+GGG 0.458006 4_1:+53206883 None:intergenic
GTTGTTGTGGGTGGAAAACC+TGG 0.460275 4_1:-53206215 Msa0555320:CDS
ATCCTTGTAATGGATTCAAA+AGG 0.460354 4_1:+53206737 None:intergenic
GATCCTTTCGGCTGTAATCC+AGG 0.461160 4_1:+53206197 None:intergenic
CTTCCCAGAACTGCTAATTA+CGG 0.462134 4_1:-53206548 Msa0555320:CDS
TCTACTTTCCTTACCTGTCT+AGG 0.463406 4_1:+53206919 None:intergenic
TCGGTTAGTCAGTCCAGAAC+AGG 0.468701 4_1:-53207297 Msa0555320:CDS
TCATCCTCTCTGCGATCTGT+TGG 0.470506 4_1:+53206317 None:intergenic
ATATGTAGATTCTGTACAAA+AGG 0.476059 4_1:-53206360 Msa0555320:CDS
GGCCTAGCTTCATAGGAAAC+GGG 0.476273 4_1:+53205772 None:intergenic
TCCTAAGCTTCCACCGGGAA+GGG 0.476848 4_1:-53207367 Msa0555320:CDS
CTCCTAAGCTTCCACCGGGA+AGG 0.486219 4_1:-53207368 Msa0555320:CDS
CTCAACGACAGGGCTTTCAC+AGG 0.488800 4_1:+53206391 None:intergenic
TGTAAATCAAATGTAATAAG+TGG 0.491990 4_1:-53204930 Msa0555320:three_prime_UTR
GCTGCATTGGGAGTTTGAGC+TGG 0.493391 4_1:+53205597 None:intergenic
TCCATTACAAGGATTAAGAA+TGG 0.494677 4_1:-53206728 Msa0555320:CDS
TGACTAACCGATGTGCCCTT+AGG 0.495545 4_1:+53207309 None:intergenic
GCCAATTTCAAGTTTCTCGA+TGG 0.497823 4_1:+53205939 None:intergenic
TTTCATCTTCACTTTCCTCC+CGG 0.499488 4_1:+53206824 None:intergenic
GCCATTTCTGATCCACGGGA+CGG 0.500051 4_1:+53206881 None:intergenic
AAGTTTGTGGACTGTTTCCT+CGG 0.500178 4_1:-53206765 Msa0555320:CDS
AATCTAGTCCTGACAGAGGC+TGG 0.501846 4_1:+53206422 None:intergenic
CTTGCCTGCAGCAAAGGCAA+TGG 0.501982 4_1:-53207001 Msa0555320:CDS
CAATAAAAGGAAAACCGAAA+AGG 0.504011 4_1:-53207550 Msa0555320:CDS
CATGATACTACAATCTCTGA+TGG 0.506473 4_1:-53207649 Msa0555320:CDS
AGAAGGAAGAAAAGGAAGGA+AGG 0.507626 4_1:+53208928 None:intergenic
GGAAACAGTCCACAAACTTT+CGG 0.511770 4_1:+53206769 None:intergenic
TCACAGAAGAACTGTGAAAG+AGG 0.511835 4_1:-53206650 Msa0555320:intron
CTTGAAATTGGCTAGTGACT+CGG 0.512239 4_1:-53205928 Msa0555320:CDS
TACAAATCAGAGTTGAAGTC+AGG 0.516938 4_1:-53207498 Msa0555320:CDS
GCTTAAGGGTGGTAGGTGGC+AGG 0.520253 4_1:-53205812 Msa0555320:CDS
TGTCGCTCCTAAGCTTCCAC+CGG 0.521378 4_1:-53207373 Msa0555320:CDS
TAGGTTCTTGCCTGCAGCAA+AGG 0.522083 4_1:-53207007 Msa0555320:CDS
GTACTTCCTCTGAAGAAAGC+AGG 0.525639 4_1:+53208864 None:intergenic
ATTTCCCACTTGGGATTCAG+TGG 0.525685 4_1:+53205573 None:intergenic
CGTGGATCAGAAATGGCAAA+AGG 0.529549 4_1:-53206875 Msa0555320:CDS
ATCAGAGTTGAAGTCAGGTC+CGG 0.531712 4_1:-53207493 Msa0555320:CDS
TTCAACCCTGCTTTCTTCAG+AGG 0.537692 4_1:-53208870 Msa0555320:five_prime_UTR
AGGGTTGAAAGTGTGAATCT+TGG 0.538834 4_1:+53208884 None:intergenic
GGAGTGTTCTCCCATACAAA+AGG 0.539753 4_1:+53207450 None:intergenic
TGCATCTTTGGGGAGTAAAG+AGG 0.540984 4_1:-53207247 Msa0555320:CDS
TTGACTAGCTTAAGGGTGGT+AGG 0.543787 4_1:-53205819 Msa0555320:CDS
TGGAGCTAAGCCCCGTCCCG+TGG 0.544836 4_1:-53206893 Msa0555320:CDS
GGAACATATCACCATTAAGA+TGG 0.545845 4_1:+53204870 None:intergenic
TCTTCAATTCATGGAGTGCA+GGG 0.547029 4_1:-53206688 Msa0555320:CDS
AGATAGAAGGAAGAAAAGGA+AGG 0.548317 4_1:+53208924 None:intergenic
AGATGCAACACTCATAGAGT+TGG 0.553027 4_1:+53207263 None:intergenic
TCAGGTCCGGTGAGTAACCC+TGG 0.553888 4_1:-53207480 Msa0555320:CDS
TCGCAGAGAGGATGATTTCG+AGG 0.554562 4_1:-53206309 Msa0555320:CDS
CTCATATTCAATACGCGTCA+AGG 0.556431 4_1:-53206966 Msa0555320:CDS
TCTGATGGAAGAAAAGCAGT+TGG 0.562125 4_1:-53207634 Msa0555320:CDS
TTCTATAGTGTCTTCAATGG+AGG 0.563606 4_1:-53206252 Msa0555320:CDS
ATAGGTCTCGTCCTCATGAT+CGG 0.563852 4_1:+53207173 None:intergenic
CCTGCAATAATTTGGAGCAA+AGG 0.564213 4_1:-53204849 Msa0555320:three_prime_UTR
ATCTGGCTTTACTAAAGAGA+AGG 0.568991 4_1:-53206513 Msa0555320:CDS
TTGAGCTGGTGCATAAATGC+CGG 0.570847 4_1:+53205611 None:intergenic
CCTGGAAGACCTAAGGATGA+AGG 0.570959 4_1:-53207429 Msa0555320:CDS
CTATGAGTGTTGCATCTTTG+GGG 0.570974 4_1:-53207257 Msa0555320:CDS
CAGGCTCGTGATTTCATGAT+CGG 0.571093 4_1:-53207030 Msa0555320:CDS
CCAACATGCTGCAAAATTGG+TGG 0.572688 4_1:-53205889 Msa0555320:CDS
GAAAAGGAAGGAAGGTTCGT+TGG 0.572853 4_1:+53208936 None:intergenic
TAGACAAGAACAGCCTAGAC+AGG 0.572998 4_1:-53206932 Msa0555320:CDS
CAAGGAAGTAACTTAGATCA+CGG 0.574563 4_1:-53206071 Msa0555320:CDS
TGTATCAAGAGCGTCTACAT+AGG 0.580096 4_1:+53207155 None:intergenic
TAGTAAACACATGGTTGTTG+TGG 0.580318 4_1:-53206228 Msa0555320:CDS
ATTATGTCCAAGATACAGGC+CGG 0.581300 4_1:-53206843 Msa0555320:CDS
GTGCATAAATGCCGGCAGCA+AGG 0.583801 4_1:+53205619 None:intergenic
AAGAACAGCCTAGACAGGTA+AGG 0.583937 4_1:-53206927 Msa0555320:CDS
TGCAGTGTGAGTGGTTTGAG+TGG 0.586341 4_1:-53207102 Msa0555320:CDS
TTAGGCGAAGGAAGTGCAAG+AGG 0.587499 4_1:+53205714 None:intergenic
TGGTTCTATATACATATAGG+TGG 0.588758 4_1:-53204996 Msa0555320:three_prime_UTR
AACCCGTTTCCTATGAAGCT+AGG 0.590273 4_1:-53205774 Msa0555320:CDS
TTATGACAGTAGAAATGAAG+TGG 0.591569 4_1:-53207220 Msa0555320:CDS
ACATCAGGACCGAAAATGGC+CGG 0.591872 4_1:-53206038 Msa0555320:CDS
TCTGAAGGAGCTTTAGGCGA+AGG 0.592504 4_1:+53205702 None:intergenic
CGCTTAAGCCAAGACTCTGA+AGG 0.593055 4_1:+53205687 None:intergenic
GAACACTCCTGGAAGACCTA+AGG 0.594365 4_1:-53207436 Msa0555320:CDS
TTGTATATGATGTCTTTGTG+TGG 0.595895 4_1:+53205751 None:intergenic
AGTAAACACATGGTTGTTGT+GGG 0.598144 4_1:-53206227 Msa0555320:CDS
TACTTCCTCTGAAGAAAGCA+GGG 0.599565 4_1:+53208865 None:intergenic
GCCCGCCTTACTGATAAAAG+TGG 0.600899 4_1:+53207600 None:intergenic
TCACGGTCTAACCTTGCTGC+CGG 0.604210 4_1:-53205630 Msa0555320:CDS
AAGTTCAGGTTCCGATCATG+AGG 0.607728 4_1:-53207184 Msa0555320:CDS
ATGAAGGCAAATTACAAACA+AGG 0.608238 4_1:-53207413 Msa0555320:CDS
GTGAGTGGTTTGAGTGGATG+CGG 0.610267 4_1:-53207096 Msa0555320:CDS
CCTGTATCTTGGACATAATG+TGG 0.610351 4_1:+53206847 None:intergenic
CTCGTGATTTCATGATCGGT+AGG 0.613662 4_1:-53207026 Msa0555320:CDS
TTGTCGCAACCTCTTCGATG+TGG 0.613863 4_1:+53206449 None:intergenic
AAACACATGGTTGTTGTGGG+TGG 0.616251 4_1:-53206224 Msa0555320:CDS
AAAATAAATACAGAAAAGCA+AGG 0.619633 4_1:-53206089 Msa0555320:CDS
TTCATGAACTGCAGTGTGAG+TGG 0.619658 4_1:-53207111 Msa0555320:CDS
TTATGTCCAAGATACAGGCC+GGG 0.619812 4_1:-53206842 Msa0555320:CDS
TAGACAGGTAAGGAAAGTAG+AGG 0.624303 4_1:-53206917 Msa0555320:CDS
GACATTGATCCACATCGAAG+AGG 0.633986 4_1:-53206458 Msa0555320:CDS
ACAGTTCCAGGGTTACTCAC+CGG 0.634972 4_1:+53207474 None:intergenic
TGAAGGCAAATTACAAACAA+GGG 0.641496 4_1:-53207412 Msa0555320:CDS
TAATTTGACTAGCTTAAGGG+TGG 0.642230 4_1:-53205823 Msa0555320:CDS
TAAAATTCCTAAGGGCACAT+CGG 0.644179 4_1:-53207316 Msa0555320:CDS
ATACAAAAGGAACAGTTCCA+GGG 0.647853 4_1:+53207463 None:intergenic
ACTAGCTTAAGGGTGGTAGG+TGG 0.651147 4_1:-53205816 Msa0555320:CDS
ATATTCTTAGAGGAAACTGT+AGG 0.653854 4_1:+53205657 None:intergenic
AGACAGGTAAGGAAAGTAGA+GGG 0.655341 4_1:-53206916 Msa0555320:CDS
AAACCTGGATTACAGCCGAA+AGG 0.656751 4_1:-53206200 Msa0555320:CDS
ATTACAAGGATTAAGAATGG+AGG 0.657642 4_1:-53206725 Msa0555320:CDS
GTCGCTCCTAAGCTTCCACC+GGG 0.657863 4_1:-53207372 Msa0555320:CDS
CAGGTAAGGAAAGTAGAGGG+TGG 0.661525 4_1:-53206913 Msa0555320:CDS
AGGTGGCAGGAAGAATGACT+CGG 0.670561 4_1:-53205799 Msa0555320:CDS
GGAAGCTTAGGAGCGACAAG+AGG 0.670890 4_1:+53207378 None:intergenic
AATGGAGGATAGTAAACACA+TGG 0.693785 4_1:-53206237 Msa0555320:CDS
GGATTCAAAAGGCAGAACCG+AGG 0.706295 4_1:+53206748 None:intergenic
TGTCCAAGATACAGGCCGGG+AGG 0.726319 4_1:-53206839 Msa0555320:CDS
ATCAAATCTAGTCCTGACAG+AGG 0.731734 4_1:+53206418 None:intergenic
GTGTCCAACAGATCGCAGAG+AGG 0.765667 4_1:-53206321 Msa0555320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGATTGAAAATTTGTT+AGG - chr4_1:53205129-53205148 Msa0555320:CDS 15.0%
!!! ATTTTCTTAAACAATTCATA+AGG - chr4_1:53205467-53205486 Msa0555320:intron 15.0%
!!! TTTTCTTAAACAATTCATAA+GGG - chr4_1:53205468-53205487 Msa0555320:intron 15.0%
!! ATAATAAATCACACAATAAT+AGG + chr4_1:53205722-53205741 None:intergenic 15.0%
!! ATTATTGTGTGATTTATTAT+TGG - chr4_1:53205722-53205741 Msa0555320:CDS 15.0%
!!! TTGAAGATACAATTATTTTT+GGG + chr4_1:53208805-53208824 None:intergenic 15.0%
!!! TTTGAAGATACAATTATTTT+TGG + chr4_1:53208806-53208825 None:intergenic 15.0%
!! TTTCAATCAGAAAAGTTTAA+TGG - chr4_1:53204964-53204983 Msa0555320:three_prime_UTR 20.0%
!! AAAAATCAACTTAATCAAAC+AGG + chr4_1:53204998-53205017 None:intergenic 20.0%
!!! AAAATAGCTTAATCTAAAGT+AGG + chr4_1:53205225-53205244 None:intergenic 20.0%
!!! AGTTACTTACAATTTTGAAT+TGG - chr4_1:53205566-53205585 Msa0555320:intron 20.0%
!!! AGATTTTGATAAAATTCCTA+AGG - chr4_1:53206296-53206315 Msa0555320:CDS 20.0%
!!! GATTTTGATAAAATTCCTAA+GGG - chr4_1:53206297-53206316 Msa0555320:CDS 20.0%
!! ATTGTAAATTCTTCAATTCA+TGG - chr4_1:53206924-53206943 Msa0555320:CDS 20.0%
!!! CTTTTCTGTATTTATTTTGT+TGG + chr4_1:53207530-53207549 None:intergenic 20.0%
!! AAAATAAATACAGAAAAGCA+AGG - chr4_1:53207532-53207551 Msa0555320:CDS 20.0%
!! ACTTATTTGAGCTTATTTAT+TGG - chr4_1:53208163-53208182 Msa0555320:intron 20.0%
!! CAAATAATTACATTGAGAAA+AGG + chr4_1:53208568-53208587 None:intergenic 20.0%
!! ATATGTATATAGAACCAAAA+AGG + chr4_1:53208622-53208641 None:intergenic 20.0%
!!! TTTTGGTTCTATATACATAT+AGG - chr4_1:53208622-53208641 Msa0555320:intron 20.0%
!!! ACTTATTACATTTGATTTAC+AGG + chr4_1:53208692-53208711 None:intergenic 20.0%
!! TGTAAATCAAATGTAATAAG+TGG - chr4_1:53208691-53208710 Msa0555320:intron 20.0%
!! ACATAAAAGATGCGATTTTT+AGG + chr4_1:53204900-53204919 None:intergenic 25.0%
!! AAATCGCATCTTTTATGTTA+TGG - chr4_1:53204902-53204921 Msa0555320:three_prime_UTR 25.0%
! ACTTAATCAAACAGGAATAA+AGG + chr4_1:53204990-53205009 None:intergenic 25.0%
! ATTGGTTAAAGATAAGACTA+TGG + chr4_1:53205052-53205071 None:intergenic 25.0%
! AGAGTCAACAACAAAAAAAT+AGG + chr4_1:53205255-53205274 None:intergenic 25.0%
!!! TATTTTTTTGTTGTTGACTC+TGG - chr4_1:53205254-53205273 Msa0555320:intron 25.0%
!! AAAGTGTCATAATCAAGAAT+AGG + chr4_1:53205417-53205436 None:intergenic 25.0%
!! TTTTGAATTGGAACTTGATA+TGG - chr4_1:53205578-53205597 Msa0555320:intron 25.0%
! TTTGAATTGGAACTTGATAT+GGG - chr4_1:53205579-53205598 Msa0555320:intron 25.0%
!! ATGGAAATAATTTGAGTTAC+AGG + chr4_1:53205651-53205670 None:intergenic 25.0%
! TAATAGGAATATGATAGCAT+TGG + chr4_1:53205706-53205725 None:intergenic 25.0%
!! ATAGCTTGCAAGAATAATAT+TGG + chr4_1:53205782-53205801 None:intergenic 25.0%
! CGTCAATAATTAACTGTAAA+TGG - chr4_1:53205880-53205899 Msa0555320:CDS 25.0%
! AGATTGTAGTATCATGTATT+TGG + chr4_1:53205968-53205987 None:intergenic 25.0%
!! CTTCTGAAAACAACAATAAA+AGG - chr4_1:53206058-53206077 Msa0555320:CDS 25.0%
! TAATAACGAAAGCGAAAAAA+AGG + chr4_1:53207013-53207032 None:intergenic 25.0%
! ATATGTAGATTCTGTACAAA+AGG - chr4_1:53207261-53207280 Msa0555320:CDS 25.0%
! TTGGAACTTAATTTATTGCT+TGG + chr4_1:53207640-53207659 None:intergenic 25.0%
!!! TAGTAATTTGACTAGCTTAA+GGG - chr4_1:53207795-53207814 Msa0555320:intron 25.0%
! TTAATTCCTTTGATCATTCA+GGG - chr4_1:53208126-53208145 Msa0555320:intron 25.0%
! AAGCTATCATAGATAACTTA+CGG + chr4_1:53208266-53208285 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAT+AGG - chr4_1:53208397-53208416 Msa0555320:intron 25.0%
! TTAAGCTGTTTATCCAAATA+GGG - chr4_1:53208398-53208417 Msa0555320:intron 25.0%
AAGAAGATAGAAGGAAGAAA+AGG + chr4_1:53204704-53204723 None:intergenic 30.0%
!!! GCTTCTTGTTTTTTGATGAA+TGG - chr4_1:53204833-53204852 Msa0555320:three_prime_UTR 30.0%
! TTTTTGATGAATGGTACAGT+TGG - chr4_1:53204842-53204861 Msa0555320:three_prime_UTR 30.0%
! TTTTGATGAATGGTACAGTT+GGG - chr4_1:53204843-53204862 Msa0555320:three_prime_UTR 30.0%
! GGTTTGTTTGTTTGTTTGAT+TGG - chr4_1:53204864-53204883 Msa0555320:three_prime_UTR 30.0%
AAAACACACATCAGTTTCAT+TGG + chr4_1:53205070-53205089 None:intergenic 30.0%
ACTACTTTCAGATCAAACAT+TGG - chr4_1:53205163-53205182 Msa0555320:intron 30.0%
TTCAGATCAAACATTGGAAT+TGG - chr4_1:53205169-53205188 Msa0555320:intron 30.0%
TCAAACATTGGAATTGGAAT+TGG - chr4_1:53205175-53205194 Msa0555320:intron 30.0%
!!! TAGGTGGAACAATTTTTTAC+CGG + chr4_1:53205313-53205332 None:intergenic 30.0%
CTCTTGATAGAGAAATTGTT+CGG + chr4_1:53205355-53205374 None:intergenic 30.0%
GGCAAATGAAAGTAAGTAAT+TGG + chr4_1:53205396-53205415 None:intergenic 30.0%
! AATTTTCTCATGCTTCCTAT+TGG - chr4_1:53205512-53205531 Msa0555320:intron 30.0%
! AGCATATGGTTTTTGTTCAA+TGG - chr4_1:53205609-53205628 Msa0555320:CDS 30.0%
!!! CCTATTAGCTTTTTACAAGA+TGG + chr4_1:53205670-53205689 None:intergenic 30.0%
CCATCTTGTAAAAAGCTAAT+AGG - chr4_1:53205667-53205686 Msa0555320:CDS 30.0%
ACTCGTATAGAGTTTATTTG+TGG - chr4_1:53205905-53205924 Msa0555320:CDS 30.0%
CAATAAAAGGAAAACCGAAA+AGG - chr4_1:53206071-53206090 Msa0555320:CDS 30.0%
ATGAAGGCAAATTACAAACA+AGG - chr4_1:53206208-53206227 Msa0555320:CDS 30.0%
TGAAGGCAAATTACAAACAA+GGG - chr4_1:53206209-53206228 Msa0555320:CDS 30.0%
TTATGACAGTAGAAATGAAG+TGG - chr4_1:53206401-53206420 Msa0555320:CDS 30.0%
!! ATCCTTGTAATGGATTCAAA+AGG + chr4_1:53206887-53206906 None:intergenic 30.0%
TCCATTACAAGGATTAAGAA+TGG - chr4_1:53206893-53206912 Msa0555320:CDS 30.0%
TCCATTCTTAATCCTTGTAA+TGG + chr4_1:53206897-53206916 None:intergenic 30.0%
ATTACAAGGATTAAGAATGG+AGG - chr4_1:53206896-53206915 Msa0555320:CDS 30.0%
TCTTTCTATAGTGTCTTCAA+TGG - chr4_1:53207366-53207385 Msa0555320:CDS 30.0%
!! GTAGTAATTTGACTAGCTTA+AGG - chr4_1:53207794-53207813 Msa0555320:intron 30.0%
TTGTATATGATGTCTTTGTG+TGG + chr4_1:53207873-53207892 None:intergenic 30.0%
ATATTCTTAGAGGAAACTGT+AGG + chr4_1:53207967-53207986 None:intergenic 30.0%
GTTAAAACTAATGCTCATCA+CGG - chr4_1:53208075-53208094 Msa0555320:intron 30.0%
TTAAAACTAATGCTCATCAC+GGG - chr4_1:53208076-53208095 Msa0555320:intron 30.0%
GTTAATTCCTTTGATCATTC+AGG - chr4_1:53208125-53208144 Msa0555320:intron 30.0%
AGCTATCATAGATAACTTAC+GGG + chr4_1:53208265-53208284 None:intergenic 30.0%
TAGCTTATGAAAACAGTATG+TGG - chr4_1:53208280-53208299 Msa0555320:intron 30.0%
! TTCCTTCAATTTTTCGTTTC+AGG - chr4_1:53208465-53208484 Msa0555320:intron 30.0%
TTCCTGAAACGAAAAATTGA+AGG + chr4_1:53208470-53208489 None:intergenic 30.0%
! TGGTTCTATATACATATAGG+TGG - chr4_1:53208625-53208644 Msa0555320:intron 30.0%
AAGTAACAACACCATCTTAA+TGG - chr4_1:53208740-53208759 Msa0555320:intron 30.0%
GATATGTTCCTGCAATAATT+TGG - chr4_1:53208764-53208783 Msa0555320:intron 30.0%
AGATAGAAGGAAGAAAAGGA+AGG + chr4_1:53204700-53204719 None:intergenic 35.0%
!! TGTTGTTGACTCTGGTAATT+CGG - chr4_1:53205262-53205281 Msa0555320:intron 35.0%
GGTAAAAAATTGTTCCACCT+AGG - chr4_1:53205312-53205331 Msa0555320:intron 35.0%
AAAATTGTTCCACCTAGGAA+TGG - chr4_1:53205317-53205336 Msa0555320:intron 35.0%
! TTCCTATTGGTTGAGAAGAA+TGG - chr4_1:53205525-53205544 Msa0555320:intron 35.0%
TTCCATTCTTCTCAACCAAT+AGG + chr4_1:53205530-53205549 None:intergenic 35.0%
ATATGGGTCAAATCAGCATA+TGG - chr4_1:53205595-53205614 Msa0555320:CDS 35.0%
TGGATACTACCCTACAATAT+TGG + chr4_1:53205762-53205781 None:intergenic 35.0%
CATGATACTACAATCTCTGA+TGG - chr4_1:53205972-53205991 Msa0555320:CDS 35.0%
!!! ATCAGCCACTTTTATCAGTA+AGG - chr4_1:53206016-53206035 Msa0555320:CDS 35.0%
!! TCGTTTTGATACTGCCTTTT+CGG + chr4_1:53206088-53206107 None:intergenic 35.0%
! TTCAACTCTGATTTGTAAGC+AGG + chr4_1:53206120-53206139 None:intergenic 35.0%
TACAAATCAGAGTTGAAGTC+AGG - chr4_1:53206123-53206142 Msa0555320:CDS 35.0%
ATACAAAAGGAACAGTTCCA+GGG + chr4_1:53206161-53206180 None:intergenic 35.0%
! TGGAACTGTTCCTTTTGTAT+GGG - chr4_1:53206161-53206180 Msa0555320:CDS 35.0%
! TGTAATTTGCCTTCATCCTT+AGG + chr4_1:53206204-53206223 None:intergenic 35.0%
! TAAAATTCCTAAGGGCACAT+CGG - chr4_1:53206305-53206324 Msa0555320:CDS 35.0%
! TCTATGAGTGTTGCATCTTT+GGG - chr4_1:53206363-53206382 Msa0555320:CDS 35.0%
! GAACCTGAACTTTCTTTTTC+GGG + chr4_1:53206429-53206448 None:intergenic 35.0%
! GGAACCTGAACTTTCTTTTT+CGG + chr4_1:53206430-53206449 None:intergenic 35.0%
TCTGCTGAAAAACTTTCAGA+TGG + chr4_1:53206567-53206586 None:intergenic 35.0%
!! AAGTTTTTCAGCAGATCAAC+AGG - chr4_1:53206572-53206591 Msa0555320:intron 35.0%
! TGCCTTTTGAATCCATTACA+AGG - chr4_1:53206882-53206901 Msa0555320:CDS 35.0%
ACGAAAGCGAAAAAAAGGTT+GGG + chr4_1:53207008-53207027 None:intergenic 35.0%
AACGAAAGCGAAAAAAAGGT+TGG + chr4_1:53207009-53207028 None:intergenic 35.0%
CTCTTTAGTAAAGCCAGATT+GGG + chr4_1:53207107-53207126 None:intergenic 35.0%
TCTCTTTAGTAAAGCCAGAT+TGG + chr4_1:53207108-53207127 None:intergenic 35.0%
!! ATCTGGCTTTACTAAAGAGA+AGG - chr4_1:53207108-53207127 Msa0555320:CDS 35.0%
GAAGGATATTCTGTGTATTC+AGG - chr4_1:53207126-53207145 Msa0555320:CDS 35.0%
! ATAGAGTTTTCTCAACGACA+GGG + chr4_1:53207243-53207262 None:intergenic 35.0%
! TATAGAGTTTTCTCAACGAC+AGG + chr4_1:53207244-53207263 None:intergenic 35.0%
TTCTATAGTGTCTTCAATGG+AGG - chr4_1:53207369-53207388 Msa0555320:CDS 35.0%
AATGGAGGATAGTAAACACA+TGG - chr4_1:53207384-53207403 Msa0555320:CDS 35.0%
TAGTAAACACATGGTTGTTG+TGG - chr4_1:53207393-53207412 Msa0555320:CDS 35.0%
AGTAAACACATGGTTGTTGT+GGG - chr4_1:53207394-53207413 Msa0555320:CDS 35.0%
TCAAGAAACACTGATCCTTT+CGG + chr4_1:53207439-53207458 None:intergenic 35.0%
GTTTCTTGATTCATCTCTCT+TGG - chr4_1:53207450-53207469 Msa0555320:CDS 35.0%
CAAGGAAGTAACTTAGATCA+CGG - chr4_1:53207550-53207569 Msa0555320:CDS 35.0%
! CGACTCTATTTTCTTATGTC+CGG + chr4_1:53207605-53207624 None:intergenic 35.0%
AGGATTCTGAATTAGGTCAT+TGG + chr4_1:53207659-53207678 None:intergenic 35.0%
ATGGATCAGGATTCTGAATT+AGG + chr4_1:53207666-53207685 None:intergenic 35.0%
TCCATCGAGAAACTTGAAAT+TGG - chr4_1:53207681-53207700 Msa0555320:intron 35.0%
!! TAATTTGACTAGCTTAAGGG+TGG - chr4_1:53207798-53207817 Msa0555320:intron 35.0%
! CCTCTAAGAATATGTCTTCA+CGG - chr4_1:53207974-53207993 Msa0555320:intron 35.0%
TTAACGATCATTTCCCACTT+GGG + chr4_1:53208060-53208079 None:intergenic 35.0%
TTTAACGATCATTTCCCACT+TGG + chr4_1:53208061-53208080 None:intergenic 35.0%
! CAATTTTTCGTTTCAGGAAC+TGG - chr4_1:53208471-53208490 Msa0555320:intron 35.0%
TCTTAAGAAAATCAGGCTTC+CGG + chr4_1:53208505-53208524 None:intergenic 35.0%
! AAGCCTGATTTTCTTAAGAG+TGG - chr4_1:53208506-53208525 Msa0555320:intron 35.0%
AGTCCACTCTTAAGAAAATC+AGG + chr4_1:53208512-53208531 None:intergenic 35.0%
!!! TCTCTTTGTTTTCATCCTAC+AGG - chr4_1:53208589-53208608 Msa0555320:intron 35.0%
GGAACATATCACCATTAAGA+TGG + chr4_1:53208754-53208773 None:intergenic 35.0%
AGAAGGAAGAAAAGGAAGGA+AGG + chr4_1:53204696-53204715 None:intergenic 40.0%
GAGAGAGAGAAGAAGATAGA+AGG + chr4_1:53204713-53204732 None:intergenic 40.0%
! AGGGTTGAAAGTGTGAATCT+TGG + chr4_1:53204740-53204759 None:intergenic 40.0%
! TACTTCCTCTGAAGAAAGCA+GGG + chr4_1:53204759-53204778 None:intergenic 40.0%
CTCTTGTGTTGTGTTTGTGT+CGG - chr4_1:53204809-53204828 Msa0555320:three_prime_UTR 40.0%
ACCGGAATATACTTACCCTT+CGG + chr4_1:53205295-53205314 None:intergenic 40.0%
TAGAACTGAGTTCCATTCCT+AGG + chr4_1:53205332-53205351 None:intergenic 40.0%
GCATGAGAAAATTCACAAGC+AGG + chr4_1:53205505-53205524 None:intergenic 40.0%
TCCACGTAGTCCAATATTGT+AGG - chr4_1:53205749-53205768 Msa0555320:CDS 40.0%
CCACGTAGTCCAATATTGTA+GGG - chr4_1:53205750-53205769 Msa0555320:CDS 40.0%
TCTGATGGAAGAAAAGCAGT+TGG - chr4_1:53205987-53206006 Msa0555320:CDS 40.0%
!!! AGCCACTTTTATCAGTAAGG+CGG - chr4_1:53206019-53206038 Msa0555320:CDS 40.0%
CATACAAAAGGAACAGTTCC+AGG + chr4_1:53206162-53206181 None:intergenic 40.0%
! CTGGAACTGTTCCTTTTGTA+TGG - chr4_1:53206160-53206179 Msa0555320:CDS 40.0%
!!! TCGACTTTTAAAACCCTTCC+CGG + chr4_1:53206270-53206289 None:intergenic 40.0%
AGATGCAACACTCATAGAGT+TGG + chr4_1:53206361-53206380 None:intergenic 40.0%
! CTCTATGAGTGTTGCATCTT+TGG - chr4_1:53206362-53206381 Msa0555320:CDS 40.0%
! CTATGAGTGTTGCATCTTTG+GGG - chr4_1:53206364-53206383 Msa0555320:CDS 40.0%
GTTCCCGAAAAAGAAAGTTC+AGG - chr4_1:53206423-53206442 Msa0555320:CDS 40.0%
!! TGTATCAAGAGCGTCTACAT+AGG + chr4_1:53206469-53206488 None:intergenic 40.0%
CTTGACGCGTATTGAATATG+AGG + chr4_1:53206657-53206676 None:intergenic 40.0%
CTCATATTCAATACGCGTCA+AGG - chr4_1:53206655-53206674 Msa0555320:CDS 40.0%
TCTACTTTCCTTACCTGTCT+AGG + chr4_1:53206705-53206724 None:intergenic 40.0%
TAGACAGGTAAGGAAAGTAG+AGG - chr4_1:53206704-53206723 Msa0555320:CDS 40.0%
AGACAGGTAAGGAAAGTAGA+GGG - chr4_1:53206705-53206724 Msa0555320:CDS 40.0%
!! TTTTGCCATTTCTGATCCAC+GGG + chr4_1:53206747-53206766 None:intergenic 40.0%
!! CTTTTGCCATTTCTGATCCA+CGG + chr4_1:53206748-53206767 None:intergenic 40.0%
CCTGTATCTTGGACATAATG+TGG + chr4_1:53206777-53206796 None:intergenic 40.0%
CCACATTATGTCCAAGATAC+AGG - chr4_1:53206774-53206793 Msa0555320:CDS 40.0%
ATTATGTCCAAGATACAGGC+CGG - chr4_1:53206778-53206797 Msa0555320:CDS 40.0%
TTTCATCTTCACTTTCCTCC+CGG + chr4_1:53206800-53206819 None:intergenic 40.0%
GGAAACAGTCCACAAACTTT+CGG + chr4_1:53206855-53206874 None:intergenic 40.0%
! AAGTTTGTGGACTGTTTCCT+CGG - chr4_1:53206856-53206875 Msa0555320:CDS 40.0%
TTCTTCAATTCATGGAGTGC+AGG - chr4_1:53206932-53206951 Msa0555320:CDS 40.0%
TCTTCAATTCATGGAGTGCA+GGG - chr4_1:53206933-53206952 Msa0555320:CDS 40.0%
TCACAGAAGAACTGTGAAAG+AGG - chr4_1:53206971-53206990 Msa0555320:CDS 40.0%
CTTCCCAGAACTGCTAATTA+CGG - chr4_1:53207073-53207092 Msa0555320:CDS 40.0%
TTCCCAGAACTGCTAATTAC+GGG - chr4_1:53207074-53207093 Msa0555320:CDS 40.0%
TTCCCGTAATTAGCAGTTCT+GGG + chr4_1:53207079-53207098 None:intergenic 40.0%
TTTCCCGTAATTAGCAGTTC+TGG + chr4_1:53207080-53207099 None:intergenic 40.0%
ATCAAATCTAGTCCTGACAG+AGG + chr4_1:53207206-53207225 None:intergenic 40.0%
!! TTCTTATGTCCGGCCATTTT+CGG + chr4_1:53207595-53207614 None:intergenic 40.0%
! TTCAAGTTTCTCGATGGATC+AGG + chr4_1:53207679-53207698 None:intergenic 40.0%
!! GCCAATTTCAAGTTTCTCGA+TGG + chr4_1:53207685-53207704 None:intergenic 40.0%
CTTGAAATTGGCTAGTGACT+CGG - chr4_1:53207693-53207712 Msa0555320:intron 40.0%
CCGTGAAGACATATTCTTAG+AGG + chr4_1:53207977-53207996 None:intergenic 40.0%
!! TGAGGTTTGCTGAGGTAATT+CGG - chr4_1:53208103-53208122 Msa0555320:intron 40.0%
AACAGACCCTGAATGATCAA+AGG + chr4_1:53208135-53208154 None:intergenic 40.0%
TTGATCATTCAGGGTCTGTT+TGG - chr4_1:53208135-53208154 Msa0555320:intron 40.0%
AGTTTCACTAAGGCCCTATT+TGG + chr4_1:53208414-53208433 None:intergenic 40.0%
GAGCGATAACAGTTTCACTA+AGG + chr4_1:53208424-53208443 None:intergenic 40.0%
TGAAACTGTTATCGCTCATG+TGG - chr4_1:53208427-53208446 Msa0555320:intron 40.0%
CAAAAAGGAGATCAACCTGT+AGG + chr4_1:53208607-53208626 None:intergenic 40.0%
!!! CTACAGGTTGATCTCCTTTT+TGG - chr4_1:53208605-53208624 Msa0555320:intron 40.0%
CCTTTGCTCCAAATTATTGC+AGG + chr4_1:53208775-53208794 None:intergenic 40.0%
! CCTGCAATAATTTGGAGCAA+AGG - chr4_1:53208772-53208791 Msa0555320:intron 40.0%
GAAAAGGAAGGAAGGTTCGT+TGG + chr4_1:53204688-53204707 None:intergenic 45.0%
TTCAACCCTGCTTTCTTCAG+AGG - chr4_1:53204751-53204770 Msa0555320:intron 45.0%
! GTACTTCCTCTGAAGAAAGC+AGG + chr4_1:53204760-53204779 None:intergenic 45.0%
GACTCTGGTAATTCGGAGTT+TGG - chr4_1:53205269-53205288 Msa0555320:intron 45.0%
TAATTCGGAGTTTGGCCGAA+GGG - chr4_1:53205277-53205296 Msa0555320:intron 45.0%
GCCGAAGGGTAAGTATATTC+CGG - chr4_1:53205291-53205310 Msa0555320:intron 45.0%
AACTGAGTTCCATTCCTAGG+TGG + chr4_1:53205329-53205348 None:intergenic 45.0%
CCCTACAATATTGGACTACG+TGG + chr4_1:53205753-53205772 None:intergenic 45.0%
!!! GCCACTTTTATCAGTAAGGC+GGG - chr4_1:53206020-53206039 Msa0555320:CDS 45.0%
ATCAGAGTTGAAGTCAGGTC+CGG - chr4_1:53206128-53206147 Msa0555320:CDS 45.0%
! GGAGTGTTCTCCCATACAAA+AGG + chr4_1:53206174-53206193 None:intergenic 45.0%
TTTGTATGGGAGAACACTCC+TGG - chr4_1:53206174-53206193 Msa0555320:CDS 45.0%
!!! ACTTTTAAAACCCTTCCCGG+TGG + chr4_1:53206267-53206286 None:intergenic 45.0%
! TGCATCTTTGGGGAGTAAAG+AGG - chr4_1:53206374-53206393 Msa0555320:CDS 45.0%
! AAGTTCAGGTTCCGATCATG+AGG - chr4_1:53206437-53206456 Msa0555320:CDS 45.0%
ATAGGTCTCGTCCTCATGAT+CGG + chr4_1:53206451-53206470 None:intergenic 45.0%
TTCATGAACTGCAGTGTGAG+TGG - chr4_1:53206510-53206529 Msa0555320:CDS 45.0%
CAGGCTCGTGATTTCATGAT+CGG - chr4_1:53206591-53206610 Msa0555320:intron 45.0%
CTCGTGATTTCATGATCGGT+AGG - chr4_1:53206595-53206614 Msa0555320:intron 45.0%
GGCTGTTCTTGTCTAACAAC+TGG + chr4_1:53206684-53206703 None:intergenic 45.0%
TAGACAAGAACAGCCTAGAC+AGG - chr4_1:53206689-53206708 Msa0555320:CDS 45.0%
AAGAACAGCCTAGACAGGTA+AGG - chr4_1:53206694-53206713 Msa0555320:CDS 45.0%
CGTGGATCAGAAATGGCAAA+AGG - chr4_1:53206746-53206765 Msa0555320:CDS 45.0%
TTATGTCCAAGATACAGGCC+GGG - chr4_1:53206779-53206798 Msa0555320:CDS 45.0%
AGCTATGCACCGAAAGTTTG+TGG - chr4_1:53206843-53206862 Msa0555320:CDS 45.0%
TACGGGAAAAAGTCCCAATC+TGG - chr4_1:53207091-53207110 Msa0555320:CDS 45.0%
GACATTGATCCACATCGAAG+AGG - chr4_1:53207163-53207182 Msa0555320:CDS 45.0%
ACAAATTACCAGCCTCTGTC+AGG - chr4_1:53207191-53207210 Msa0555320:CDS 45.0%
AAACACATGGTTGTTGTGGG+TGG - chr4_1:53207397-53207416 Msa0555320:CDS 45.0%
AAACCTGGATTACAGCCGAA+AGG - chr4_1:53207421-53207440 Msa0555320:CDS 45.0%
!! CACGGTTTTAGTGAGACATC+AGG - chr4_1:53207568-53207587 Msa0555320:CDS 45.0%
TGAGACATCAGGACCGAAAA+TGG - chr4_1:53207579-53207598 Msa0555320:CDS 45.0%
! TTGGCTAGTGACTCGGAATT+CGG - chr4_1:53207700-53207719 Msa0555320:intron 45.0%
GAGCCAACATGCTGCAAAAT+TGG - chr4_1:53207729-53207748 Msa0555320:intron 45.0%
! CCACCAATTTTGCAGCATGT+TGG + chr4_1:53207735-53207754 None:intergenic 45.0%
CCAACATGCTGCAAAATTGG+TGG - chr4_1:53207732-53207751 Msa0555320:intron 45.0%
!! TTGACTAGCTTAAGGGTGGT+AGG - chr4_1:53207802-53207821 Msa0555320:intron 45.0%
AACCCGTTTCCTATGAAGCT+AGG - chr4_1:53207847-53207866 Msa0555320:intron 45.0%
TGGCCTAGCTTCATAGGAAA+CGG + chr4_1:53207853-53207872 None:intergenic 45.0%
TTTGTGTGGCCTAGCTTCAT+AGG + chr4_1:53207859-53207878 None:intergenic 45.0%
! CAAGACTCTGAAGGAGCTTT+AGG + chr4_1:53207928-53207947 None:intergenic 45.0%
CTAAAGCTCCTTCAGAGTCT+TGG - chr4_1:53207926-53207945 Msa0555320:intron 45.0%
TTGAGCTGGTGCATAAATGC+CGG + chr4_1:53208013-53208032 None:intergenic 45.0%
ATTTCCCACTTGGGATTCAG+TGG + chr4_1:53208051-53208070 None:intergenic 45.0%
ACTGTTATCGCTCATGTGGT+TGG - chr4_1:53208431-53208450 Msa0555320:intron 45.0%
GAAAATCAGGCTTCCGGAAT+AGG + chr4_1:53208499-53208518 None:intergenic 45.0%
GTAATTCGGAGTTTGGCCGA+AGG - chr4_1:53205276-53205295 Msa0555320:intron 50.0%
GCCCGCCTTACTGATAAAAG+TGG + chr4_1:53206024-53206043 None:intergenic 50.0%
ACAGTTCCAGGGTTACTCAC+CGG + chr4_1:53206150-53206169 None:intergenic 50.0%
GAACACTCCTGGAAGACCTA+AGG - chr4_1:53206185-53206204 Msa0555320:CDS 50.0%
CCTTCATCCTTAGGTCTTCC+AGG + chr4_1:53206195-53206214 None:intergenic 50.0%
CCTGGAAGACCTAAGGATGA+AGG - chr4_1:53206192-53206211 Msa0555320:CDS 50.0%
TGACTAACCGATGTGCCCTT+AGG + chr4_1:53206315-53206334 None:intergenic 50.0%
! TCGGTTAGTCAGTCCAGAAC+AGG - chr4_1:53206324-53206343 Msa0555320:CDS 50.0%
TGCAGTGTGAGTGGTTTGAG+TGG - chr4_1:53206519-53206538 Msa0555320:CDS 50.0%
GTGAGTGGTTTGAGTGGATG+CGG - chr4_1:53206525-53206544 Msa0555320:CDS 50.0%
TAGGTTCTTGCCTGCAGCAA+AGG - chr4_1:53206614-53206633 Msa0555320:intron 50.0%
CAGGTAAGGAAAGTAGAGGG+TGG - chr4_1:53206708-53206727 Msa0555320:CDS 50.0%
GGATTCAAAAGGCAGAACCG+AGG + chr4_1:53206876-53206895 None:intergenic 50.0%
!! TAGCAGTTCTGGGAAGCTGT+GGG + chr4_1:53207069-53207088 None:intergenic 50.0%
!! TTAGCAGTTCTGGGAAGCTG+TGG + chr4_1:53207070-53207089 None:intergenic 50.0%
TTGTCGCAACCTCTTCGATG+TGG + chr4_1:53207175-53207194 None:intergenic 50.0%
AATCTAGTCCTGACAGAGGC+TGG + chr4_1:53207202-53207221 None:intergenic 50.0%
TCATCCTCTCTGCGATCTGT+TGG + chr4_1:53207307-53207326 None:intergenic 50.0%
TCGCAGAGAGGATGATTTCG+AGG - chr4_1:53207312-53207331 Msa0555320:CDS 50.0%
GTTGTTGTGGGTGGAAAACC+TGG - chr4_1:53207406-53207425 Msa0555320:CDS 50.0%
GATCCTTTCGGCTGTAATCC+AGG + chr4_1:53207427-53207446 None:intergenic 50.0%
ACATCAGGACCGAAAATGGC+CGG - chr4_1:53207583-53207602 Msa0555320:CDS 50.0%
! ACTAGCTTAAGGGTGGTAGG+TGG - chr4_1:53207805-53207824 Msa0555320:intron 50.0%
AGGTGGCAGGAAGAATGACT+CGG - chr4_1:53207822-53207841 Msa0555320:intron 50.0%
GGCCTAGCTTCATAGGAAAC+GGG + chr4_1:53207852-53207871 None:intergenic 50.0%
! TTAGGCGAAGGAAGTGCAAG+AGG + chr4_1:53207910-53207929 None:intergenic 50.0%
!! TCTGAAGGAGCTTTAGGCGA+AGG + chr4_1:53207922-53207941 None:intergenic 50.0%
CGCTTAAGCCAAGACTCTGA+AGG + chr4_1:53207937-53207956 None:intergenic 50.0%
!! GGATTCAGTGGTGCTGCATT+GGG + chr4_1:53208039-53208058 None:intergenic 50.0%
AGCACCACTGAATCCCAAGT+GGG - chr4_1:53208044-53208063 Msa0555320:intron 50.0%
ATGCTCATCACGGGCATATG+AGG - chr4_1:53208085-53208104 Msa0555320:intron 50.0%
TCAGGAACTGGCACCTATTC+CGG - chr4_1:53208483-53208502 Msa0555320:intron 50.0%
GGAAGCTTAGGAGCGACAAG+AGG + chr4_1:53206246-53206265 None:intergenic 55.0%
TGTCGCTCCTAAGCTTCCAC+CGG - chr4_1:53206248-53206267 Msa0555320:CDS 55.0%
TCCTAAGCTTCCACCGGGAA+GGG - chr4_1:53206254-53206273 Msa0555320:CDS 55.0%
GGAGACAGTGCTTCCTGTTC+TGG + chr4_1:53206340-53206359 None:intergenic 55.0%
CTTGCCTGCAGCAAAGGCAA+TGG - chr4_1:53206620-53206639 Msa0555320:intron 55.0%
GAAGCCATTGCCTTTGCTGC+AGG + chr4_1:53206627-53206646 None:intergenic 55.0%
CATTTCTGATCCACGGGACG+GGG + chr4_1:53206741-53206760 None:intergenic 55.0%
CCATTTCTGATCCACGGGAC+GGG + chr4_1:53206742-53206761 None:intergenic 55.0%
GCCATTTCTGATCCACGGGA+CGG + chr4_1:53206743-53206762 None:intergenic 55.0%
TTTCCTCCCGGCCTGTATCT+TGG + chr4_1:53206788-53206807 None:intergenic 55.0%
!! AGCAGTTCTGGGAAGCTGTG+GGG + chr4_1:53207068-53207087 None:intergenic 55.0%
CTCAACGACAGGGCTTTCAC+AGG + chr4_1:53207233-53207252 None:intergenic 55.0%
GTGTCCAACAGATCGCAGAG+AGG - chr4_1:53207300-53207319 Msa0555320:CDS 55.0%
TCACGGTCTAACCTTGCTGC+CGG - chr4_1:53207991-53208010 Msa0555320:intron 55.0%
GTGCATAAATGCCGGCAGCA+AGG + chr4_1:53208005-53208024 None:intergenic 55.0%
GCTGCATTGGGAGTTTGAGC+TGG + chr4_1:53208027-53208046 None:intergenic 55.0%
!! GGGATTCAGTGGTGCTGCAT+TGG + chr4_1:53208040-53208059 None:intergenic 55.0%
CAGCACCACTGAATCCCAAG+TGG - chr4_1:53208043-53208062 Msa0555320:intron 55.0%
!! CGGGCATATGAGGTTTGCTG+AGG - chr4_1:53208095-53208114 Msa0555320:intron 55.0%
TCAGGTCCGGTGAGTAACCC+TGG - chr4_1:53206141-53206160 Msa0555320:CDS 60.0%
GTCGCTCCTAAGCTTCCACC+GGG - chr4_1:53206249-53206268 Msa0555320:CDS 60.0%
CTCCTAAGCTTCCACCGGGA+AGG - chr4_1:53206253-53206272 Msa0555320:CDS 60.0%
ACCCTTCCCGGTGGAAGCTT+AGG + chr4_1:53206258-53206277 None:intergenic 60.0%
CCCGTCCCGTGGATCAGAAA+TGG - chr4_1:53206739-53206758 Msa0555320:CDS 60.0%
TGTCCAAGATACAGGCCGGG+AGG - chr4_1:53206782-53206801 Msa0555320:CDS 60.0%
GCTTAAGGGTGGTAGGTGGC+AGG - chr4_1:53207809-53207828 Msa0555320:intron 60.0%
TGGAGCTAAGCCCCGTCCCG+TGG - chr4_1:53206728-53206747 Msa0555320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53204663 53208980 53204663 ID=Msa0555320;Name=Msa0555320
chr4_1 mRNA 53204663 53208980 53204663 ID=Msa0555320-mRNA-1;Parent=Msa0555320;Name=Msa0555320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|0.75|0.8|1|0.5|0.2|5|336|688
chr4_1 exon 53204663 53204698 53204663 ID=Msa0555320-mRNA-1:exon:15468;Parent=Msa0555320-mRNA-1
chr4_1 exon 53204799 53205156 53204799 ID=Msa0555320-mRNA-1:exon:15467;Parent=Msa0555320-mRNA-1
chr4_1 exon 53205582 53206570 53205582 ID=Msa0555320-mRNA-1:exon:15466;Parent=Msa0555320-mRNA-1
chr4_1 exon 53206651 53207681 53206651 ID=Msa0555320-mRNA-1:exon:15465;Parent=Msa0555320-mRNA-1
chr4_1 exon 53208868 53208980 53208868 ID=Msa0555320-mRNA-1:exon:15464;Parent=Msa0555320-mRNA-1
chr4_1 five_prime_UTR 53208868 53208980 53208868 ID=Msa0555320-mRNA-1:five_prime_utr;Parent=Msa0555320-mRNA-1
chr4_1 five_prime_UTR 53207671 53207681 53207671 ID=Msa0555320-mRNA-1:five_prime_utr;Parent=Msa0555320-mRNA-1
chr4_1 CDS 53206651 53207670 53206651 ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1
chr4_1 CDS 53205582 53206570 53205582 ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1
chr4_1 CDS 53205099 53205156 53205099 ID=Msa0555320-mRNA-1:cds;Parent=Msa0555320-mRNA-1
chr4_1 three_prime_UTR 53204799 53205098 53204799 ID=Msa0555320-mRNA-1:three_prime_utr;Parent=Msa0555320-mRNA-1
chr4_1 three_prime_UTR 53204663 53204698 53204663 ID=Msa0555320-mRNA-1:three_prime_utr;Parent=Msa0555320-mRNA-1
Gene Sequence

>Msa0555320

ATGATACTACAATCTCTGATGGAAGAAAAGCAGTTGGATTTTGATCAGCCACTTTTATCAGTAAGGCGGGCATCGTCAACAGAATCTTCTGAAAACAACAATAAAAGGAAAACCGAAAAGGCAGTATCAAAACGAACTCGTCTTCCTGCTTACAAATCAGAGTTGAAGTCAGGTCCGGTGAGTAACCCTGGAACTGTTCCTTTTGTATGGGAGAACACTCCTGGAAGACCTAAGGATGAAGGCAAATTACAAACAAGGGATATTGAAGAGCCTCTTGTCGCTCCTAAGCTTCCACCGGGAAGGGTTTTAAAAGTCGAACAGCAAGATTTTGATAAAATTCCTAAGGGCACATCGGTTAGTCAGTCCAGAACAGGAAGCACTGTCTCCAACTCTATGAGTGTTGCATCTTTGGGGAGTAAAGAGGAAAATTATGACAGTAGAAATGAAGTGGTTCCCGAAAAAGAAAGTTCAGGTTCCGATCATGAGGACGAGACCTATGTAGACGCTCTTGATACACTTTCTAGAACTGAGTCATTCTTCATGAACTGCAGTGTGAGTGGTTTGAGTGGATGCGGTGATCGAGACATTCAGCCATCTGAAAGTTTTTCAGCAGATCAACAGGCTCGTGATTTCATGATCGGTAGGTTCTTGCCTGCAGCAAAGGCAATGGCTTCTGAAACACCTCATATTCAATACGCGTCAAGGAAGCCAGTTGTTAGACAAGAACAGCCTAGACAGGTAAGGAAAGTAGAGGGTGGAGCTAAGCCCCGTCCCGTGGATCAGAAATGGCAAAAGGTTATGCCACATTATGTCCAAGATACAGGCCGGGAGGAAAGTGAAGATGAAAGCGATGATAATGATGCATATGAAAGCTATGCACCGAAAGTTTGTGGACTGTTTCCTCGGTTCTGCCTTTTGAATCCATTACAAGGATTAAGAATGGAGGATAAGATTGTAAATTCTTCAATTCATGGAGTGCAGGGTAAATCAATTGCTTCTCACAGAAGAACTGTGAAAGAGCTTCCCAGAACTGCTAATTACGGGAAAAAGTCCCAATCTGGCTTTACTAAAGAGAAGGATATTCTGTGTATTCAGGAAAAATCTAAGCGTGACATTGATCCACATCGAAGAGGTTGCGACAAATTACCAGCCTCTGTCAGGACTAGATTTGATTCAACCTGTGAAAGCCCTGTCGTTGAGAAAACTCTATATGTAGATTCTGTACAAAAGGCTTCTTCTGAAATGACGTGTCCAACAGATCGCAGAGAGGATGATTTCGAGGCTATAAGAAAAGATAGTAGCATCAATACAAATCTTTCTATAGTGTCTTCAATGGAGGATAGTAAACACATGGTTGTTGTGGGTGGAAAACCTGGATTACAGCCGAAAGGATCAGTGTTTCTTGATTCATCTCTCTTGGTTTGTTCTGATAGATCAAGTGATGATATACAAATGAAGAAAATGACAAATCATTCCAACAAAATAAATACAGAAAAGCAAGGAAGTAACTTAGATCACGGTTTTAGTGAGACATCAGGACCGAAAATGGCCGGACATAAGAAAATAGAGTCGAAAAATGAAGTTCCAAGCAATAAATTAAGTTCCAATGACCTAATTCAGAATCCTGATCCATCGAGAAACTTGAAATTGGCTAGTGACTCGGAATTCGGTTTAAAGAGCCAACATGCTGCAAAATTGGTGGATCAAGAATGCGCTAATGTTCATGACTCTAATGTGAATCGTAGTAATTTGACTAGCTTAAGGGTGGTAGGTGGCAGGAAGAATGACTCGGAAAACCCGTTTCCTATGAAGCTAGGCCACACAAAGACATCATATACAAGCTCTGTGAAGCATCCTCTTGCACTTCCTTCGCCTAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACTTTACCTACAGTTTCCTCTAAGAATATGTCTTCACGGTCTAACCTTGCTGCCGGCATTTATGCACCAGCTCAAACTCCCAATGCAGCACCACTGAATCCCAAGAACTGGCACCTATTCCGGAAGCCTGATTTTCTTAAGAGTGGACTTCTGATAATATGA

Protein sequence

>Msa0555320

MILQSLMEEKQLDFDQPLLSVRRASSTESSENNNKRKTEKAVSKRTRLPAYKSELKSGPVSNPGTVPFVWENTPGRPKDEGKLQTRDIEEPLVAPKLPPGRVLKVEQQDFDKIPKGTSVSQSRTGSTVSNSMSVASLGSKEENYDSRNEVVPEKESSGSDHEDETYVDALDTLSRTESFFMNCSVSGLSGCGDRDIQPSESFSADQQARDFMIGRFLPAAKAMASETPHIQYASRKPVVRQEQPRQVRKVEGGAKPRPVDQKWQKVMPHYVQDTGREESEDESDDNDAYESYAPKVCGLFPRFCLLNPLQGLRMEDKIVNSSIHGVQGKSIASHRRTVKELPRTANYGKKSQSGFTKEKDILCIQEKSKRDIDPHRRGCDKLPASVRTRFDSTCESPVVEKTLYVDSVQKASSEMTCPTDRREDDFEAIRKDSSINTNLSIVSSMEDSKHMVVVGGKPGLQPKGSVFLDSSLLVCSDRSSDDIQMKKMTNHSNKINTEKQGSNLDHGFSETSGPKMAGHKKIESKNEVPSNKLSSNDLIQNPDPSRNLKLASDSEFGLKSQHAAKLVDQECANVHDSNVNRSNLTSLRVVGGRKNDSENPFPMKLGHTKTSYTSSVKHPLALPSPKAPSESWLKRTLPTVSSKNMSSRSNLAAGIYAPAQTPNAAPLNPKNWHLFRKPDFLKSGLLII*