Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432780 | XP_003596653.1 | 86.890 | 328 | 16 | 2 | 1 | 301 | 1 | 328 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432780 | sp|Q9CXF4|TBC15_MOUSE | 44.056 | 143 | 76 | 2 | 158 | 298 | 394 | 534 | 1.44e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432780 | G7IJN4 | 86.890 | 328 | 16 | 2 | 1 | 301 | 1 | 328 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa1432780 | 0.813222 | 2.855319e-51 | -8.615850e-47 |
| Msa0106620 | Msa1432780 | 0.811605 | 6.439909e-51 | -8.615850e-47 |
| Msa0106710 | Msa1432780 | 0.803985 | 2.684412e-49 | -8.615850e-47 |
| Msa1369690 | Msa1432780 | 0.817526 | 3.150352e-52 | -8.615850e-47 |
| Msa1380220 | Msa1432780 | 0.802280 | 6.046849e-49 | -8.615850e-47 |
| Msa1418240 | Msa1432780 | 0.806000 | 1.017261e-49 | -8.615850e-47 |
| Msa1432780 | Msa1434040 | 0.812851 | 3.443885e-51 | -8.615850e-47 |
| Msa1432780 | Msa1461540 | 0.813192 | 2.899279e-51 | -8.615850e-47 |
| Msa0613110 | Msa1432780 | 0.804164 | 2.464035e-49 | -8.615850e-47 |
| Msa0709120 | Msa1432780 | 0.812235 | 4.695760e-51 | -8.615850e-47 |
| Msa0711150 | Msa1432780 | 0.820841 | 5.541709e-53 | -8.615850e-47 |
| Msa0797250 | Msa1432780 | 0.806696 | 7.254850e-50 | -8.615850e-47 |
| Msa0139670 | Msa1432780 | 0.812529 | 4.048841e-51 | -8.615850e-47 |
| Msa0189040 | Msa1432780 | 0.804597 | 2.001538e-49 | -8.615850e-47 |
| Msa0207350 | Msa1432780 | 0.802261 | 6.101831e-49 | -8.615850e-47 |
| Msa0217700 | Msa1432780 | 0.854946 | 8.769825e-62 | -8.615850e-47 |
| Msa1226270 | Msa1432780 | 0.826530 | 2.578746e-54 | -8.615850e-47 |
| Msa1283740 | Msa1432780 | 0.810975 | 8.821425e-51 | -8.615850e-47 |
| Msa1313320 | Msa1432780 | 0.802285 | 6.031697e-49 | -8.615850e-47 |
| Msa1323690 | Msa1432780 | 0.819351 | 1.215573e-52 | -8.615850e-47 |
| Msa0382370 | Msa1432780 | 0.838068 | 3.581597e-57 | -8.615850e-47 |
| Msa0432160 | Msa1432780 | 0.840509 | 8.331401e-58 | -8.615850e-47 |
| Msa0450400 | Msa1432780 | -0.823940 | 1.056856e-53 | -8.615850e-47 |
| Msa0467100 | Msa1432780 | 0.804997 | 1.651259e-49 | -8.615850e-47 |
| Msa0468410 | Msa1432780 | 0.805607 | 1.230482e-49 | -8.615850e-47 |
| Msa0476680 | Msa1432780 | 0.846086 | 2.708228e-59 | -8.615850e-47 |
| Msa0241140 | Msa1432780 | 0.801570 | 8.459574e-49 | -8.615850e-47 |
| Msa0259220 | Msa1432780 | 0.803295 | 3.731707e-49 | -8.615850e-47 |
| Msa0278570 | Msa1432780 | 0.843239 | 1.582952e-58 | -8.615850e-47 |
| Msa0279850 | Msa1432780 | 0.814292 | 1.659845e-51 | -8.615850e-47 |
| Msa0296820 | Msa1432780 | 0.885250 | 9.555955e-72 | -8.615850e-47 |
| Msa0304100 | Msa1432780 | 0.800282 | 1.550834e-48 | -8.615850e-47 |
| Msa0317970 | Msa1432780 | 0.813818 | 2.111319e-51 | -8.615850e-47 |
| Msa0358400 | Msa1432780 | 0.803100 | 4.094504e-49 | -8.615850e-47 |
| Msa1188180 | Msa1432780 | 0.809211 | 2.117112e-50 | -8.615850e-47 |
| Msa1201640 | Msa1432780 | 0.805627 | 1.218334e-49 | -8.615850e-47 |
| Msa0485240 | Msa1432780 | 0.810888 | 9.212075e-51 | -8.615850e-47 |
| Msa0521010 | Msa1432780 | 0.847795 | 9.221310e-60 | -8.615850e-47 |
| Msa0549890 | Msa1432780 | 0.800886 | 1.167502e-48 | -8.615850e-47 |
| Msa0555320 | Msa1432780 | 0.816102 | 6.576084e-52 | -8.615850e-47 |
| Msa0592080 | Msa1432780 | 0.802010 | 6.873035e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432780 | MtrunA17_Chr2g0319591 | 86.890 | 328 | 16 | 2 | 1 | 301 | 1 | 328 | 0.0 | 577 |
| Msa1432780 | MtrunA17_Chr4g0041821 | 70.732 | 328 | 65 | 4 | 1 | 301 | 1 | 324 | 1.62e-167 | 472 |
| Msa1432780 | MtrunA17_Chr1g0183581 | 48.000 | 325 | 114 | 4 | 1 | 298 | 12 | 308 | 1.37e-109 | 324 |
| Msa1432780 | MtrunA17_Chr2g0329651 | 50.625 | 160 | 78 | 1 | 143 | 302 | 360 | 518 | 1.23e-47 | 169 |
| Msa1432780 | MtrunA17_Chr4g0064141 | 41.958 | 143 | 79 | 2 | 158 | 298 | 431 | 571 | 5.74e-30 | 119 |
| Msa1432780 | MtrunA17_Chr1g0146661 | 42.400 | 125 | 70 | 1 | 177 | 301 | 383 | 505 | 1.73e-26 | 108 |
| Msa1432780 | MtrunA17_Chr3g0127461 | 43.200 | 125 | 69 | 1 | 177 | 301 | 338 | 460 | 2.81e-26 | 108 |
| Msa1432780 | MtrunA17_Chr8g0378291 | 27.607 | 163 | 100 | 4 | 157 | 301 | 222 | 384 | 5.66e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432780 | AT4G27100.2 | 61.890 | 328 | 89 | 5 | 1 | 301 | 1 | 319 | 1.47e-138 | 399 |
| Msa1432780 | AT4G27100.1 | 61.890 | 328 | 89 | 5 | 1 | 301 | 1 | 319 | 1.85e-138 | 398 |
| Msa1432780 | AT5G54780.1 | 60.671 | 328 | 91 | 4 | 1 | 301 | 1 | 317 | 4.37e-136 | 392 |
| Msa1432780 | AT4G28550.1 | 48.780 | 328 | 120 | 4 | 1 | 301 | 7 | 313 | 1.44e-111 | 330 |
| Msa1432780 | AT4G28550.2 | 49.231 | 325 | 117 | 4 | 1 | 298 | 7 | 310 | 1.71e-111 | 326 |
| Msa1432780 | AT2G20440.3 | 48.923 | 325 | 118 | 4 | 1 | 298 | 7 | 310 | 2.05e-111 | 327 |
| Msa1432780 | AT4G28550.3 | 49.074 | 324 | 117 | 4 | 1 | 297 | 7 | 309 | 2.12e-111 | 326 |
| Msa1432780 | AT2G20440.1 | 48.476 | 328 | 121 | 4 | 1 | 301 | 7 | 313 | 2.32e-111 | 329 |
| Msa1432780 | AT2G20440.2 | 48.476 | 328 | 121 | 4 | 1 | 301 | 7 | 313 | 2.32e-111 | 329 |
| Msa1432780 | AT2G20440.4 | 52.294 | 218 | 83 | 2 | 84 | 301 | 1 | 197 | 3.07e-82 | 251 |
| Msa1432780 | AT2G43490.5 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.08e-50 | 178 |
| Msa1432780 | AT2G43490.4 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.15e-50 | 178 |
| Msa1432780 | AT2G43490.1 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.18e-50 | 178 |
| Msa1432780 | AT2G43490.7 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.18e-50 | 178 |
| Msa1432780 | AT2G43490.3 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.18e-50 | 178 |
| Msa1432780 | AT2G43490.2 | 51.786 | 168 | 80 | 1 | 135 | 302 | 339 | 505 | 1.18e-50 | 178 |
| Msa1432780 | AT2G43490.6 | 51.786 | 168 | 80 | 1 | 135 | 302 | 335 | 501 | 1.20e-50 | 178 |
| Msa1432780 | AT2G43490.8 | 51.786 | 168 | 80 | 1 | 135 | 302 | 335 | 501 | 1.20e-50 | 178 |
| Msa1432780 | AT3G59570.2 | 50.000 | 172 | 85 | 1 | 131 | 302 | 339 | 509 | 3.37e-48 | 171 |
| Msa1432780 | AT3G59570.1 | 50.000 | 172 | 85 | 1 | 131 | 302 | 339 | 509 | 3.72e-48 | 171 |
| Msa1432780 | AT3G59570.3 | 50.000 | 172 | 85 | 1 | 131 | 302 | 339 | 509 | 6.09e-48 | 171 |
| Msa1432780 | AT5G52580.3 | 39.161 | 143 | 83 | 2 | 158 | 298 | 445 | 585 | 1.17e-27 | 113 |
| Msa1432780 | AT5G52580.2 | 39.161 | 143 | 83 | 2 | 158 | 298 | 456 | 596 | 1.19e-27 | 113 |
| Msa1432780 | AT5G52580.1 | 39.161 | 143 | 83 | 2 | 158 | 298 | 439 | 579 | 1.37e-27 | 112 |
| Msa1432780 | AT5G53570.1 | 43.200 | 125 | 69 | 1 | 177 | 301 | 336 | 458 | 2.74e-27 | 111 |
| Msa1432780 | AT5G53570.2 | 43.200 | 125 | 69 | 1 | 177 | 301 | 363 | 485 | 3.42e-27 | 111 |
| Msa1432780 | AT5G41940.1 | 44.000 | 125 | 68 | 1 | 177 | 301 | 343 | 465 | 1.06e-26 | 110 |
| Msa1432780 | AT5G24390.1 | 40.800 | 125 | 72 | 1 | 177 | 301 | 315 | 437 | 1.51e-26 | 109 |
| Msa1432780 | AT3G49350.1 | 39.024 | 123 | 73 | 1 | 179 | 301 | 330 | 450 | 3.27e-24 | 102 |
| Msa1432780 | AT1G04830.2 | 28.743 | 167 | 99 | 5 | 154 | 301 | 223 | 388 | 1.26e-15 | 77.4 |
| Msa1432780 | AT1G04830.1 | 28.743 | 167 | 99 | 5 | 154 | 301 | 223 | 388 | 1.34e-15 | 77.0 |
| Msa1432780 | AT4G13730.2 | 27.879 | 165 | 101 | 4 | 155 | 301 | 228 | 392 | 1.93e-15 | 76.6 |
| Msa1432780 | AT4G13730.1 | 27.879 | 165 | 101 | 4 | 155 | 301 | 228 | 392 | 2.50e-15 | 76.3 |
| Msa1432780 | AT4G13730.3 | 27.879 | 165 | 101 | 4 | 155 | 301 | 217 | 381 | 2.99e-15 | 76.3 |
Find 76 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGTCTGGATTTCTTTC+AGG | 0.106976 | tig0027174:+1855 | Msa1432780:intergenic |
| AAGAAAACTTGTCAAAATTA+TGG | 0.190885 | tig0027174:-1559 | Msa1432780:CDS |
| ATAAAATACCTATATGTTTA+TGG | 0.198183 | tig0027174:+850 | Msa1432780:intergenic |
| CCTATATGTTTATGGAGTTT+TGG | 0.239607 | tig0027174:+858 | Msa1432780:intergenic |
| CGCCAATTGTTTCCTCTTGT+TGG | 0.248172 | tig0027174:-1948 | Msa1432780:CDS |
| GGAGGCTCAACTAAGTAATT+TGG | 0.270154 | tig0027174:-904 | Msa1432780:CDS |
| AAACACTAAGTCCAAGAAAA+TGG | 0.315609 | tig0027174:-2653 | Msa1432780:CDS |
| GCATTGTTGTTGAATGTATA+GGG | 0.322322 | tig0027174:-3917 | Msa1432780:five_prime_UTR |
| ATGATGAAGCAGACGCATTT+TGG | 0.333770 | tig0027174:-1125 | Msa1432780:CDS |
| GATGTACTGGTCGCACTCTT+GGG | 0.336065 | tig0027174:-929 | Msa1432780:CDS |
| TGCATTGTTGTTGAATGTAT+AGG | 0.342965 | tig0027174:-3918 | Msa1432780:five_prime_UTR |
| AGATGTACTGGTCGCACTCT+TGG | 0.345747 | tig0027174:-930 | Msa1432780:CDS |
| AAATTCACAAACCTATTTGA+TGG | 0.347183 | tig0027174:+1727 | Msa1432780:intergenic |
| ATGTTAACTCTCCATCAAAT+AGG | 0.350184 | tig0027174:-1738 | Msa1432780:intron |
| GTACCTATGGGAGGTGTGTC+TGG | 0.353821 | tig0027174:-512 | Msa1432780:CDS |
| AGAAAACTTGTCAAAATTAT+GGG | 0.382772 | tig0027174:-1558 | Msa1432780:CDS |
| TACTTCCTCAAGATAATAAT+AGG | 0.382978 | tig0027174:-1824 | Msa1432780:CDS |
| TTTGTGATTCATTGTACCTA+TGG | 0.385679 | tig0027174:-525 | Msa1432780:CDS |
| TTTACAGAATCTATACTTGA+AGG | 0.394310 | tig0027174:+1801 | Msa1432780:intergenic |
| CCAAAACTCCATAAACATAT+AGG | 0.406934 | tig0027174:-858 | Msa1432780:intron |
| ATAATCATGGGGTCTTGAAT+TGG | 0.410294 | tig0027174:+1879 | Msa1432780:intergenic |
| ATTTACTCAAGAAGGGTATC+TGG | 0.414638 | tig0027174:-2622 | Msa1432780:CDS |
| CATCTCAAGATTCAAGATCA+AGG | 0.418043 | tig0027174:-3657 | Msa1432780:intron |
| ATCATTACTGCAATCTGGTC+TGG | 0.419284 | tig0027174:+3685 | Msa1432780:intergenic |
| CATCAAGAAGAATTATCATT+GGG | 0.422403 | tig0027174:+1145 | Msa1432780:intergenic |
| CAAGAAGGGTATCTGGATAT+AGG | 0.425363 | tig0027174:-2615 | Msa1432780:CDS |
| CTTGTGATGTGGAGAGATCC+AGG | 0.427729 | tig0027174:-3734 | Msa1432780:exon |
| ATATTCTTGCAGTTTATGCT+TGG | 0.433846 | tig0027174:-1535 | Msa1432780:CDS |
| CTTGATCTTGAATCTTGAGA+TGG | 0.445826 | tig0027174:+3658 | Msa1432780:intergenic |
| ACTTGTCAACTCAAAGAGAA+TGG | 0.449458 | tig0027174:+3892 | Msa1432780:intergenic |
| TCATCAAGAAGAATTATCAT+TGG | 0.451073 | tig0027174:+1144 | Msa1432780:intergenic |
| GCTTGGATAGATAAAGAAGT+TGG | 0.451389 | tig0027174:-1518 | Msa1432780:CDS |
| TTGACGTGGTACGCACTGAT+AGG | 0.451450 | tig0027174:-1604 | Msa1432780:CDS |
| TTGTGATTCATTGTACCTAT+GGG | 0.454384 | tig0027174:-524 | Msa1432780:CDS |
| TTGTTTCCTCTTGTTGGAAG+TGG | 0.462346 | tig0027174:-1942 | Msa1432780:CDS |
| ATTTCTTTCAGGCATAATCA+TGG | 0.468298 | tig0027174:+1866 | Msa1432780:intergenic |
| AGTACAGCTAATCCCTTGTC+TGG | 0.469428 | tig0027174:+1843 | Msa1432780:intergenic |
| CGAGGAAATTTCAGATGTAC+TGG | 0.471593 | tig0027174:-942 | Msa1432780:CDS |
| GGAACATCATTACTGCAATC+TGG | 0.472237 | tig0027174:+3680 | Msa1432780:intergenic |
| CATGATGCATTTACTCAAGA+AGG | 0.472341 | tig0027174:-2630 | Msa1432780:CDS |
| AAAGAATCAGCTGAAACTCC+TGG | 0.480245 | tig0027174:+3716 | Msa1432780:intergenic |
| TGGTCGCACTCTTGGGGTGG+AGG | 0.488394 | tig0027174:-922 | Msa1432780:CDS |
| GATGGAGAGTTAACATCCAC+TGG | 0.490352 | tig0027174:+1745 | Msa1432780:intergenic |
| TGGCCATCATCAGTAATTAC+AGG | 0.493011 | tig0027174:+1903 | Msa1432780:intergenic |
| TTCCAACAAGAGGAAACAAT+TGG | 0.498284 | tig0027174:+1946 | Msa1432780:intergenic |
| TTTCTTTCAGGCATAATCAT+GGG | 0.498518 | tig0027174:+1867 | Msa1432780:intergenic |
| TAGGTACAATGAATCACAAA+AGG | 0.507991 | tig0027174:+528 | Msa1432780:intergenic |
| TCTTTCAGTTTCTTGTGATG+TGG | 0.511895 | tig0027174:-3745 | Msa1432780:exon |
| CTTGTCAACTCAAAGAGAAT+GGG | 0.517137 | tig0027174:+3893 | Msa1432780:intergenic |
| TCACCTGTAATTACTGATGA+TGG | 0.529934 | tig0027174:-1906 | Msa1432780:CDS |
| CACAAACACAAGAAGAAACA+AGG | 0.539544 | tig0027174:+3792 | Msa1432780:intergenic |
| GAATTATCATTGGGGAGCAT+AGG | 0.542492 | tig0027174:+1154 | Msa1432780:intergenic |
| TTGATCTTGAATCTTGAGAT+GGG | 0.545349 | tig0027174:+3659 | Msa1432780:intergenic |
| TACTGGTCGCACTCTTGGGG+TGG | 0.558646 | tig0027174:-925 | Msa1432780:CDS |
| GAAGGCCTATTATTATCTTG+AGG | 0.560973 | tig0027174:+1819 | Msa1432780:intergenic |
| TGGAGAACAGAACATATTGG+TGG | 0.562536 | tig0027174:-607 | Msa1432780:intron |
| TCAGGATGCAATATGCTACA+TGG | 0.565622 | tig0027174:-1983 | Msa1432780:intron |
| TCATGGGGTCTTGAATTGGT+TGG | 0.566507 | tig0027174:+1883 | Msa1432780:intergenic |
| TTCTTTCAGGCATAATCATG+GGG | 0.568000 | tig0027174:+1868 | Msa1432780:intergenic |
| ATGTACTGGTCGCACTCTTG+GGG | 0.573792 | tig0027174:-928 | Msa1432780:CDS |
| AAAGAAGTTGGATACGGTCA+AGG | 0.579690 | tig0027174:-1506 | Msa1432780:intron |
| TGATTCATTGTACCTATGGG+AGG | 0.581982 | tig0027174:-521 | Msa1432780:CDS |
| AATCGACCACTTCCAACAAG+AGG | 0.590144 | tig0027174:+1936 | Msa1432780:intergenic |
| ATAGATAAAGAAGTTGGATA+CGG | 0.592454 | tig0027174:-1512 | Msa1432780:CDS |
| ATGATGCATTTACTCAAGAA+GGG | 0.608798 | tig0027174:-2629 | Msa1432780:CDS |
| CCTGAAAGAAATCCAGACAA+GGG | 0.614978 | tig0027174:-1855 | Msa1432780:CDS |
| AGAACAGAACATATTGGTGG+AGG | 0.618638 | tig0027174:-604 | Msa1432780:intron |
| AAGCCAGACACACCTCCCAT+AGG | 0.625296 | tig0027174:+509 | Msa1432780:intergenic |
| GCCTGAAAGAAATCCAGACA+AGG | 0.626590 | tig0027174:-1856 | Msa1432780:CDS |
| GGTACGCACTGATAGGACAT+TGG | 0.627837 | tig0027174:-1597 | Msa1432780:CDS |
| CTTTGAGACGAATCTACCGA+GGG | 0.661418 | tig0027174:-2587 | Msa1432780:CDS |
| CAGACAAGAAACTAATCCAG+TGG | 0.668020 | tig0027174:-1761 | Msa1432780:CDS |
| ATCAAGAAGAATTATCATTG+GGG | 0.677023 | tig0027174:+1146 | Msa1432780:intergenic |
| ACTTTGAGACGAATCTACCG+AGG | 0.700779 | tig0027174:-2588 | Msa1432780:CDS |
| ATACGTTTCAGGTCTTGACG+TGG | 0.710991 | tig0027174:-1618 | Msa1432780:intron |
| TTTGAGACGAATCTACCGAG+GGG | 0.798701 | tig0027174:-2586 | Msa1432780:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAAAGTTTTTTTTATAAA+TGG | - | tig0027174:1096-1115 | Msa1432780:intron | 10.0% |
| !!! | TTTTTTTTATTCTAATAAGA+AGG | - | tig0027174:3049-3068 | Msa1432780:intron | 10.0% |
| !!! | TTTTATTCAACAAATTTTAA+TGG | + | tig0027174:3754-3773 | Msa1432780:intergenic | 10.0% |
| !!! | AAAGTTTGATTTTTATTTCT+GGG | - | tig0027174:819-838 | Msa1432780:intron | 15.0% |
| !!! | GTTTTTGTTATAATTTTGTT+TGG | - | tig0027174:841-860 | Msa1432780:intron | 15.0% |
| !! | ATAAAATACCTATATGTTTA+TGG | + | tig0027174:3590-3609 | Msa1432780:intergenic | 15.0% |
| !!! | AATTTACTGTCTTTTAATTT+TGG | - | tig0027174:3810-3829 | Msa1432780:five_prime_UTR | 15.0% |
| !! | CAGAAATAAAAATCAAACTT+TGG | + | tig0027174:820-839 | Msa1432780:intergenic | 20.0% |
| !!! | CAAAGTTTGATTTTTATTTC+TGG | - | tig0027174:818-837 | Msa1432780:intron | 20.0% |
| !!! | TTTTCTTAATTTTGGAAACT+CGG | - | tig0027174:1694-1713 | Msa1432780:intron | 20.0% |
| !! | ATAATCATCAATACTTTCAA+GGG | + | tig0027174:1985-2004 | Msa1432780:intergenic | 20.0% |
| !!! | CAAGAATTTTTATGTTTATG+TGG | - | tig0027174:2035-2054 | Msa1432780:intron | 20.0% |
| !! | TTGTTAAAAAATTTCAAACC+AGG | - | tig0027174:2077-2096 | Msa1432780:intron | 20.0% |
| !! | TGTTAAAAAATTTCAAACCA+GGG | - | tig0027174:2078-2097 | Msa1432780:intron | 20.0% |
| !! | ACATTGAAACAATTATGAAA+TGG | + | tig0027174:2217-2236 | Msa1432780:intergenic | 20.0% |
| !! | TTACCATGTGATTTATATTA+CGG | + | tig0027174:2778-2797 | Msa1432780:intergenic | 20.0% |
| !! | AAGAAAACTTGTCAAAATTA+TGG | - | tig0027174:2878-2897 | Msa1432780:intron | 20.0% |
| !! | AGAAAACTTGTCAAAATTAT+GGG | - | tig0027174:2879-2898 | Msa1432780:intron | 20.0% |
| !! | AATAAACCAAGTAAACAAAT+TGG | - | tig0027174:3079-3098 | Msa1432780:intron | 20.0% |
| !! | TAAAAGAGATAATAGAGATA+AGG | + | tig0027174:3372-3391 | Msa1432780:intergenic | 20.0% |
| !! | TTTCCATTAATAATTTCTTC+AGG | + | tig0027174:3710-3729 | Msa1432780:intergenic | 20.0% |
| !! | AGAAACTTTTGTTCATTTTG+AGG | - | tig0027174:1166-1185 | Msa1432780:CDS | 25.0% |
| !! | GAAACTTTTGTTCATTTTGA+GGG | - | tig0027174:1167-1186 | Msa1432780:CDS | 25.0% |
| !! | AAACTTTTGTTCATTTTGAG+GGG | - | tig0027174:1168-1187 | Msa1432780:intron | 25.0% |
| !! | TTGAATTTGATGACAAGTAT+TGG | - | tig0027174:1224-1243 | Msa1432780:intron | 25.0% |
| ! | TTAACACACAATGTTATCAA+CGG | + | tig0027174:1348-1367 | Msa1432780:intergenic | 25.0% |
| ! | TGATAACATTGTGTGTTAAA+TGG | - | tig0027174:1349-1368 | Msa1432780:intron | 25.0% |
| ! | GATAACATTGTGTGTTAAAT+GGG | - | tig0027174:1350-1369 | Msa1432780:intron | 25.0% |
| !!! | CTTAAGATAGTGTCTTTTTT+TGG | - | tig0027174:1454-1473 | Msa1432780:intron | 25.0% |
| !! | ATGCAAATGATTTTGTGTTA+AGG | + | tig0027174:1612-1631 | Msa1432780:intergenic | 25.0% |
| !! | ACTTCTTGATTGTTATTACA+TGG | - | tig0027174:1749-1768 | Msa1432780:CDS | 25.0% |
| ! | AAATATGATTAAGATCAGAC+AGG | + | tig0027174:1951-1970 | Msa1432780:intergenic | 25.0% |
| ! | CATAATCATCAATACTTTCA+AGG | + | tig0027174:1986-2005 | Msa1432780:intergenic | 25.0% |
| !!! | CTTGAAAGTATTGATGATTA+TGG | - | tig0027174:1984-2003 | Msa1432780:intron | 25.0% |
| !!! | CAATGTTTTAAAAACTCAAC+CGG | - | tig0027174:2231-2250 | Msa1432780:intron | 25.0% |
| !! | AGTTCAAGTAATGATCTTTT+AGG | + | tig0027174:2414-2433 | Msa1432780:intergenic | 25.0% |
| !! | ACTTTTATGTTTATGTCATC+AGG | - | tig0027174:2436-2455 | Msa1432780:intron | 25.0% |
| ! | TACTTCCTCAAGATAATAAT+AGG | - | tig0027174:2613-2632 | Msa1432780:CDS | 25.0% |
| ! | TTTACAGAATCTATACTTGA+AGG | + | tig0027174:2639-2658 | Msa1432780:intergenic | 25.0% |
| ! | AAATTCACAAACCTATTTGA+TGG | + | tig0027174:2713-2732 | Msa1432780:intergenic | 25.0% |
| ! | ACGTATTATGTGCATAAAAA+GGG | + | tig0027174:2805-2824 | Msa1432780:intergenic | 25.0% |
| ! | AACGTATTATGTGCATAAAA+AGG | + | tig0027174:2806-2825 | Msa1432780:intergenic | 25.0% |
| ! | ATAGATAAAGAAGTTGGATA+CGG | - | tig0027174:2925-2944 | Msa1432780:intron | 25.0% |
| ! | AAAAAAAACTACTACTTGCA+TGG | + | tig0027174:3035-3054 | Msa1432780:intergenic | 25.0% |
| !! | TTGTTTCCAATTTGTTTACT+TGG | + | tig0027174:3088-3107 | Msa1432780:intergenic | 25.0% |
| ! | ATCAAGAAGAATTATCATTG+GGG | + | tig0027174:3294-3313 | Msa1432780:intergenic | 25.0% |
| ! | CATCAAGAAGAATTATCATT+GGG | + | tig0027174:3295-3314 | Msa1432780:intergenic | 25.0% |
| ! | TCATCAAGAAGAATTATCAT+TGG | + | tig0027174:3296-3315 | Msa1432780:intergenic | 25.0% |
| ! | AAGTATGTAATTCAAGTGTT+CGG | - | tig0027174:3421-3440 | Msa1432780:intron | 25.0% |
| ! | ATGCCTGAAGAAATTATTAA+TGG | - | tig0027174:3704-3723 | Msa1432780:CDS | 25.0% |
| ! | TTTCTTCAACATAACAAAAG+AGG | + | tig0027174:3779-3798 | Msa1432780:intergenic | 25.0% |
| !!! | CTTTTGTTATGTTGAAGAAA+TGG | - | tig0027174:3779-3798 | Msa1432780:five_prime_UTR | 25.0% |
| ! | TGCATTGTTGTTGAATGTAT+AGG | - | tig0027174:519-538 | Msa1432780:CDS | 30.0% |
| ! | GCATTGTTGTTGAATGTATA+GGG | - | tig0027174:520-539 | Msa1432780:CDS | 30.0% |
| !! | AGTTGACAAGTTTTTGTTTC+TGG | - | tig0027174:557-576 | Msa1432780:CDS | 30.0% |
| !! | GTTGACAAGTTTTTGTTTCT+GGG | - | tig0027174:558-577 | Msa1432780:CDS | 30.0% |
| TTGATCTTGAATCTTGAGAT+GGG | + | tig0027174:781-800 | Msa1432780:intergenic | 30.0% | |
| ! | TTGGTGATATAAACTGTTGT+TGG | - | tig0027174:860-879 | Msa1432780:CDS | 30.0% |
| TGGTGATATAAACTGTTGTT+GGG | - | tig0027174:861-880 | Msa1432780:CDS | 30.0% | |
| TATAAACTGTTGTTGGGTAT+AGG | - | tig0027174:867-886 | Msa1432780:CDS | 30.0% | |
| GAAGTGTATTATTGGATTGA+TGG | - | tig0027174:889-908 | Msa1432780:CDS | 30.0% | |
| TAGTACATAACAATGAAGCA+CGG | + | tig0027174:1037-1056 | Msa1432780:intergenic | 30.0% | |
| ! | TTTCAGATAGTTGATATGTG+AGG | - | tig0027174:1201-1220 | Msa1432780:intron | 30.0% |
| AAACACTAAGTCCAAGAAAA+TGG | - | tig0027174:1784-1803 | Msa1432780:CDS | 30.0% | |
| ATGATGCATTTACTCAAGAA+GGG | - | tig0027174:1808-1827 | Msa1432780:CDS | 30.0% | |
| ! | GAAGTTTGGGAATTTTTACT+TGG | - | tig0027174:2123-2142 | Msa1432780:intron | 30.0% |
| ! | TTAGGTCTAGAATTCAGAAA+TGG | + | tig0027174:2396-2415 | Msa1432780:intergenic | 30.0% |
| TTTCTTTCAGGCATAATCAT+GGG | + | tig0027174:2573-2592 | Msa1432780:intergenic | 30.0% | |
| ATTTCTTTCAGGCATAATCA+TGG | + | tig0027174:2574-2593 | Msa1432780:intergenic | 30.0% | |
| ATGTTAACTCTCCATCAAAT+AGG | - | tig0027174:2699-2718 | Msa1432780:intron | 30.0% | |
| TCACCGTAATATAAATCACA+TGG | - | tig0027174:2772-2791 | Msa1432780:intron | 30.0% | |
| TTATGCACATAATACGTTTC+AGG | - | tig0027174:2808-2827 | Msa1432780:intron | 30.0% | |
| ATATTCTTGCAGTTTATGCT+TGG | - | tig0027174:2902-2921 | Msa1432780:intron | 30.0% | |
| !! | AGTACTGATCTATTTCAAAG+AGG | + | tig0027174:2967-2986 | Msa1432780:intergenic | 30.0% |
| TTCTCGATATATCAATCTAG+TGG | + | tig0027174:3126-3145 | Msa1432780:intergenic | 30.0% | |
| ! | CCTATATGTTTATGGAGTTT+TGG | + | tig0027174:3582-3601 | Msa1432780:intergenic | 30.0% |
| CCAAAACTCCATAAACATAT+AGG | - | tig0027174:3579-3598 | Msa1432780:intron | 30.0% | |
| ! | TCGAATTTTCTAACTCGATT+TGG | - | tig0027174:3647-3666 | Msa1432780:intron | 30.0% |
| ! | CGAATTTTCTAACTCGATTT+GGG | - | tig0027174:3648-3667 | Msa1432780:intron | 30.0% |
| !! | TTTTGGAGAACAGAACATAT+TGG | - | tig0027174:3827-3846 | Msa1432780:five_prime_UTR | 30.0% |
| TAGGTACAATGAATCACAAA+AGG | + | tig0027174:3912-3931 | Msa1432780:intergenic | 30.0% | |
| TTTGTGATTCATTGTACCTA+TGG | - | tig0027174:3912-3931 | Msa1432780:five_prime_UTR | 30.0% | |
| TTGTGATTCATTGTACCTAT+GGG | - | tig0027174:3913-3932 | Msa1432780:five_prime_UTR | 30.0% | |
| CTTGTCAACTCAAAGAGAAT+GGG | + | tig0027174:547-566 | Msa1432780:intergenic | 35.0% | |
| ACTTGTCAACTCAAAGAGAA+TGG | + | tig0027174:548-567 | Msa1432780:intergenic | 35.0% | |
| CACAAACACAAGAAGAAACA+AGG | + | tig0027174:648-667 | Msa1432780:intergenic | 35.0% | |
| TCTTTCAGTTTCTTGTGATG+TGG | - | tig0027174:692-711 | Msa1432780:intron | 35.0% | |
| CTTGATCTTGAATCTTGAGA+TGG | + | tig0027174:782-801 | Msa1432780:intergenic | 35.0% | |
| CATCTCAAGATTCAAGATCA+AGG | - | tig0027174:780-799 | Msa1432780:intron | 35.0% | |
| ! | GGGTATAGGAAGTGTATTAT+TGG | - | tig0027174:881-900 | Msa1432780:CDS | 35.0% |
| !! | GAGCTTGTTAAGTTGATAAC+AGG | - | tig0027174:1142-1161 | Msa1432780:CDS | 35.0% |
| !!! | GGATTTTTTGACAATCTCCA+TGG | - | tig0027174:1254-1273 | Msa1432780:intron | 35.0% |
| ! | GTATCCATCATGGTGTTTTA+TGG | - | tig0027174:1297-1316 | Msa1432780:intron | 35.0% |
| !! | ATTGTGTGTTAAATGGGTTG+TGG | - | tig0027174:1356-1375 | Msa1432780:intron | 35.0% |
| CTTTGCTAAGTTGTCAGTAA+TGG | - | tig0027174:1381-1400 | Msa1432780:intron | 35.0% | |
| !!! | GTTGTCAGTAATGGTTTTGT+TGG | - | tig0027174:1390-1409 | Msa1432780:intron | 35.0% |
| CTAGACTTTCAATCTCACAA+TGG | - | tig0027174:1655-1674 | Msa1432780:intron | 35.0% | |
| ! | TGATTGTTATTACATGGCTC+AGG | - | tig0027174:1755-1774 | Msa1432780:CDS | 35.0% |
| !!! | AATGCATCATGCCATTTTCT+TGG | + | tig0027174:1798-1817 | Msa1432780:intergenic | 35.0% |
| CATGATGCATTTACTCAAGA+AGG | - | tig0027174:1807-1826 | Msa1432780:CDS | 35.0% | |
| !! | ATTTACTCAAGAAGGGTATC+TGG | - | tig0027174:1815-1834 | Msa1432780:CDS | 35.0% |
| ATATAAGAGCAAATACCCCT+CGG | + | tig0027174:1869-1888 | Msa1432780:intergenic | 35.0% | |
| ATATCTGAATCCTAGCTTGA+TGG | - | tig0027174:1921-1940 | Msa1432780:CDS | 35.0% | |
| ATCAATTAGGGGAGAAGTTT+GGG | - | tig0027174:2110-2129 | Msa1432780:intron | 35.0% | |
| TTTCGTCAAATGTACTCTTC+GGG | + | tig0027174:2158-2177 | Msa1432780:intergenic | 35.0% | |
| CTTTCGTCAAATGTACTCTT+CGG | + | tig0027174:2159-2178 | Msa1432780:intergenic | 35.0% | |
| CAACTATTCGGTTATTTGAG+TGG | + | tig0027174:2324-2343 | Msa1432780:intergenic | 35.0% | |
| GTTTAACTGGTTGAACTGTA+TGG | - | tig0027174:2360-2379 | Msa1432780:intron | 35.0% | |
| ! | GTCTAGAATTCAGAAATGGT+GGG | + | tig0027174:2392-2411 | Msa1432780:intergenic | 35.0% |
| TTCCAACAAGAGGAAACAAT+TGG | + | tig0027174:2494-2513 | Msa1432780:intergenic | 35.0% | |
| TCACCTGTAATTACTGATGA+TGG | - | tig0027174:2531-2550 | Msa1432780:intron | 35.0% | |
| ATAATCATGGGGTCTTGAAT+TGG | + | tig0027174:2561-2580 | Msa1432780:intergenic | 35.0% | |
| TTCTTTCAGGCATAATCATG+GGG | + | tig0027174:2572-2591 | Msa1432780:intergenic | 35.0% | |
| GAAGGCCTATTATTATCTTG+AGG | + | tig0027174:2621-2640 | Msa1432780:intergenic | 35.0% | |
| ! | CTTGTGCACTATTTTGTAGT+AGG | - | tig0027174:2738-2757 | Msa1432780:intron | 35.0% |
| GCTTGGATAGATAAAGAAGT+TGG | - | tig0027174:2919-2938 | Msa1432780:intron | 35.0% | |
| ATCACATGTATCAACGTAGT+TGG | + | tig0027174:3008-3027 | Msa1432780:intergenic | 35.0% | |
| TTGCAAGGTTGCAAGAAAAA+TGG | + | tig0027174:3177-3196 | Msa1432780:intergenic | 35.0% | |
| AAGCTTAGAGACATTGCAAA+TGG | + | tig0027174:3223-3242 | Msa1432780:intergenic | 35.0% | |
| AACAATTCACGATTCTGAAC+AGG | - | tig0027174:3251-3270 | Msa1432780:intron | 35.0% | |
| !!! | ATTTTCTAACTCGATTTGGG+TGG | - | tig0027174:3651-3670 | Msa1432780:intron | 35.0% |
| !! | GCGACTATGTATTTGCTTTT+CGG | - | tig0027174:3855-3874 | Msa1432780:five_prime_UTR | 35.0% |
| !! | ATTTGCTTTTCGGATGCTTA+TGG | - | tig0027174:3865-3884 | Msa1432780:five_prime_UTR | 35.0% |
| AAAGAATCAGCTGAAACTCC+TGG | + | tig0027174:724-743 | Msa1432780:intergenic | 40.0% | |
| ATCATTACTGCAATCTGGTC+TGG | + | tig0027174:755-774 | Msa1432780:intergenic | 40.0% | |
| GGAACATCATTACTGCAATC+TGG | + | tig0027174:760-779 | Msa1432780:intergenic | 40.0% | |
| CCTAAAAGGCTTTCAATCAG+AGG | + | tig0027174:966-985 | Msa1432780:intergenic | 40.0% | |
| ! | CCTCTGATTGAAAGCCTTTT+AGG | - | tig0027174:963-982 | Msa1432780:intron | 40.0% |
| ATCAACACTGCACACCTAAA+AGG | + | tig0027174:980-999 | Msa1432780:intergenic | 40.0% | |
| !! | TTGATGACAAGTATTGGCCA+TGG | - | tig0027174:1230-1249 | Msa1432780:intron | 40.0% |
| GATTGTCAAAAAATCCGCCA+TGG | + | tig0027174:1250-1269 | Msa1432780:intergenic | 40.0% | |
| ! | TCCATCATGGTGTTTTATGG+TGG | - | tig0027174:1300-1319 | Msa1432780:intron | 40.0% |
| TCCACCATAAAACACCATGA+TGG | + | tig0027174:1304-1323 | Msa1432780:intergenic | 40.0% | |
| ACACACAATGTTATCAACGG+AGG | + | tig0027174:1345-1364 | Msa1432780:intergenic | 40.0% | |
| !! | CAAGAAGGGTATCTGGATAT+AGG | - | tig0027174:1822-1841 | Msa1432780:CDS | 40.0% |
| CAAACTTCTCCCCTAATTGA+TGG | + | tig0027174:2111-2130 | Msa1432780:intergenic | 40.0% | |
| CATCAATTAGGGGAGAAGTT+TGG | - | tig0027174:2109-2128 | Msa1432780:intron | 40.0% | |
| ATCAAATAAGAGAACGCCGA+AGG | - | tig0027174:2181-2200 | Msa1432780:intron | 40.0% | |
| AAATGGAAGCTGACTACCTT+CGG | + | tig0027174:2200-2219 | Msa1432780:intergenic | 40.0% | |
| CATAGTTCAACCACTCAAAC+CGG | - | tig0027174:2280-2299 | Msa1432780:intron | 40.0% | |
| GTTTGACTGTTGTTCTGTTC+CGG | + | tig0027174:2302-2321 | Msa1432780:intergenic | 40.0% | |
| AACCGAATAGTTGACAGCAT+CGG | - | tig0027174:2331-2350 | Msa1432780:intron | 40.0% | |
| AACCGATGCTGTCAACTATT+CGG | + | tig0027174:2336-2355 | Msa1432780:intergenic | 40.0% | |
| ACTGGTTGAACTGTATGGTT+CGG | - | tig0027174:2365-2384 | Msa1432780:intron | 40.0% | |
| ! | GGTCTAGAATTCAGAAATGG+TGG | + | tig0027174:2393-2412 | Msa1432780:intergenic | 40.0% |
| TCAGGATGCAATATGCTACA+TGG | - | tig0027174:2454-2473 | Msa1432780:intron | 40.0% | |
| TTGTTTCCTCTTGTTGGAAG+TGG | - | tig0027174:2495-2514 | Msa1432780:intron | 40.0% | |
| TGGCCATCATCAGTAATTAC+AGG | + | tig0027174:2537-2556 | Msa1432780:intergenic | 40.0% | |
| CCTGAAAGAAATCCAGACAA+GGG | - | tig0027174:2582-2601 | Msa1432780:intron | 40.0% | |
| CAGACAAGAAACTAATCCAG+TGG | - | tig0027174:2676-2695 | Msa1432780:intron | 40.0% | |
| AAAGAAGTTGGATACGGTCA+AGG | - | tig0027174:2931-2950 | Msa1432780:intron | 40.0% | |
| TGCAACCTTGCAACAAACAA+TGG | - | tig0027174:3184-3203 | Msa1432780:intron | 40.0% | |
| ! | ACTTGCCATTGTTTGTTGCA+AGG | + | tig0027174:3192-3211 | Msa1432780:intergenic | 40.0% |
| GAGACATTGCAAATGGTGTT+TGG | + | tig0027174:3216-3235 | Msa1432780:intergenic | 40.0% | |
| ! | GAATTATCATTGGGGAGCAT+AGG | + | tig0027174:3286-3305 | Msa1432780:intergenic | 40.0% |
| ! | ATGATGAAGCAGACGCATTT+TGG | - | tig0027174:3312-3331 | Msa1432780:intron | 40.0% |
| !! | GTTCTTGAACTTTTCAAGCG+AGG | - | tig0027174:3477-3496 | Msa1432780:intron | 40.0% |
| CGAGGAAATTTCAGATGTAC+TGG | - | tig0027174:3495-3514 | Msa1432780:intron | 40.0% | |
| GGAGGCTCAACTAAGTAATT+TGG | - | tig0027174:3533-3552 | Msa1432780:intron | 40.0% | |
| TGGAGAACAGAACATATTGG+TGG | - | tig0027174:3830-3849 | Msa1432780:five_prime_UTR | 40.0% | |
| AGAACAGAACATATTGGTGG+AGG | - | tig0027174:3833-3852 | Msa1432780:five_prime_UTR | 40.0% | |
| TGATTCATTGTACCTATGGG+AGG | - | tig0027174:3916-3935 | Msa1432780:five_prime_UTR | 40.0% | |
| TGATGTGTATGTGTCGTGTC+CGG | - | tig0027174:996-1015 | Msa1432780:intron | 45.0% | |
| ACGGACACAAACATGAACAC+CGG | + | tig0027174:1018-1037 | Msa1432780:intergenic | 45.0% | |
| !! | ATGACAAGTATTGGCCATGG+CGG | - | tig0027174:1233-1252 | Msa1432780:intron | 45.0% |
| TCTCCATGGCCAATTTGTGA+AGG | - | tig0027174:1268-1287 | Msa1432780:intron | 45.0% | |
| CATCCTTCACAAATTGGCCA+TGG | + | tig0027174:1274-1293 | Msa1432780:intergenic | 45.0% | |
| CATGGCCAATTTGTGAAGGA+TGG | - | tig0027174:1272-1291 | Msa1432780:intron | 45.0% | |
| TACCGCCATCCTTCACAAAT+TGG | + | tig0027174:1280-1299 | Msa1432780:intergenic | 45.0% | |
| ATGTTATCAACGGAGGATCG+CGG | + | tig0027174:1338-1357 | Msa1432780:intergenic | 45.0% | |
| !! | TTGGCGATGCTACTTTGTTG+AGG | - | tig0027174:1409-1428 | Msa1432780:intron | 45.0% |
| !! | TGGCGATGCTACTTTGTTGA+GGG | - | tig0027174:1410-1429 | Msa1432780:intron | 45.0% |
| TGTTATTACATGGCTCAGGC+TGG | - | tig0027174:1759-1778 | Msa1432780:CDS | 45.0% | |
| !! | ACTTTGAGACGAATCTACCG+AGG | - | tig0027174:1849-1868 | Msa1432780:CDS | 45.0% |
| !! | CTTTGAGACGAATCTACCGA+GGG | - | tig0027174:1850-1869 | Msa1432780:CDS | 45.0% |
| ! | TTTGAGACGAATCTACCGAG+GGG | - | tig0027174:1851-1870 | Msa1432780:CDS | 45.0% |
| ! | GACAGGTTTTCCATCAAGCT+AGG | + | tig0027174:1934-1953 | Msa1432780:intergenic | 45.0% |
| ! | TAATTGATGGATGGACTCCC+TGG | + | tig0027174:2098-2117 | Msa1432780:intergenic | 45.0% |
| AGGGAGTCCATCCATCAATT+AGG | - | tig0027174:2097-2116 | Msa1432780:intron | 45.0% | |
| GGGAGTCCATCCATCAATTA+GGG | - | tig0027174:2098-2117 | Msa1432780:intron | 45.0% | |
| GGAGTCCATCCATCAATTAG+GGG | - | tig0027174:2099-2118 | Msa1432780:intron | 45.0% | |
| CTTCTCCCCTAATTGATGGA+TGG | + | tig0027174:2107-2126 | Msa1432780:intergenic | 45.0% | |
| ! | GGTCTTGTCAGTTCAATGTC+CGG | + | tig0027174:2253-2272 | Msa1432780:intergenic | 45.0% |
| CATTGAACTGACAAGACCTG+TGG | - | tig0027174:2255-2274 | Msa1432780:intron | 45.0% | |
| ! | TTGTTCTGTTCCGGTTTGAG+TGG | + | tig0027174:2293-2312 | Msa1432780:intergenic | 45.0% |
| !! | TAGTTGACAGCATCGGTTCA+CGG | - | tig0027174:2338-2357 | Msa1432780:intron | 45.0% |
| CGCCAATTGTTTCCTCTTGT+TGG | - | tig0027174:2489-2508 | Msa1432780:intron | 45.0% | |
| AATCGACCACTTCCAACAAG+AGG | + | tig0027174:2504-2523 | Msa1432780:intergenic | 45.0% | |
| TCATGGGGTCTTGAATTGGT+TGG | + | tig0027174:2557-2576 | Msa1432780:intergenic | 45.0% | |
| GCCTGAAAGAAATCCAGACA+AGG | - | tig0027174:2581-2600 | Msa1432780:intron | 45.0% | |
| CCCTTGTCTGGATTTCTTTC+AGG | + | tig0027174:2585-2604 | Msa1432780:intergenic | 45.0% | |
| AGTACAGCTAATCCCTTGTC+TGG | + | tig0027174:2597-2616 | Msa1432780:intergenic | 45.0% | |
| GATGGAGAGTTAACATCCAC+TGG | + | tig0027174:2695-2714 | Msa1432780:intergenic | 45.0% | |
| ! | ATACGTTTCAGGTCTTGACG+TGG | - | tig0027174:2819-2838 | Msa1432780:intron | 45.0% |
| AAGTTGGATACGGTCAAGGT+GGG | - | tig0027174:2935-2954 | Msa1432780:intron | 45.0% | |
| !!! | TTTTTTATTTTTCTTAATTT+TGG | - | tig0027174:1686-1705 | Msa1432780:intron | 5.0% |
| CTTGTGATGTGGAGAGATCC+AGG | - | tig0027174:703-722 | Msa1432780:intron | 50.0% | |
| GGCCAATTTGTGAAGGATGG+CGG | - | tig0027174:1275-1294 | Msa1432780:intron | 50.0% | |
| ! | AAGGATGGCGGTATCCATCA+TGG | - | tig0027174:1287-1306 | Msa1432780:intron | 50.0% |
| GTGGTTGAACTATGAGCCAC+AGG | + | tig0027174:2274-2293 | Msa1432780:intergenic | 50.0% | |
| !! | GCATCGGTTCACGGTTTAAC+TGG | - | tig0027174:2347-2366 | Msa1432780:intron | 50.0% |
| ! | TTGACGTGGTACGCACTGAT+AGG | - | tig0027174:2833-2852 | Msa1432780:intron | 50.0% |
| ! | GGTACGCACTGATAGGACAT+TGG | - | tig0027174:2840-2859 | Msa1432780:intron | 50.0% |
| GAAGTTGGATACGGTCAAGG+TGG | - | tig0027174:2934-2953 | Msa1432780:intron | 50.0% | |
| ! | AGATGTACTGGTCGCACTCT+TGG | - | tig0027174:3507-3526 | Msa1432780:intron | 50.0% |
| ! | GATGTACTGGTCGCACTCTT+GGG | - | tig0027174:3508-3527 | Msa1432780:intron | 50.0% |
| ! | ATGTACTGGTCGCACTCTTG+GGG | - | tig0027174:3509-3528 | Msa1432780:intron | 50.0% |
| ! | GTACCTATGGGAGGTGTGTC+TGG | - | tig0027174:3925-3944 | Msa1432780:five_prime_UTR | 55.0% |
| AAGCCAGACACACCTCCCAT+AGG | + | tig0027174:3931-3950 | Msa1432780:intergenic | 55.0% | |
| TACTGGTCGCACTCTTGGGG+TGG | - | tig0027174:3512-3531 | Msa1432780:intron | 60.0% | |
| TGGTCGCACTCTTGGGGTGG+AGG | - | tig0027174:3515-3534 | Msa1432780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027174 | gene | 504 | 3955 | 504 | ID=Msa1432780;Name=Msa1432780 |
| tig0027174 | mRNA | 504 | 3955 | 504 | ID=Msa1432780-mRNA-1;Parent=Msa1432780;Name=Msa1432780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=205|0.71|0.75|0.87|0.71|0.87|8|0|303 |
| tig0027174 | exon | 504 | 619 | 504 | ID=Msa1432780-mRNA-1:exon:8288;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 859 | 964 | 859 | ID=Msa1432780-mRNA-1:exon:8287;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 1098 | 1186 | 1098 | ID=Msa1432780-mRNA-1:exon:8286;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 1507 | 1629 | 1507 | ID=Msa1432780-mRNA-1:exon:8285;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 1739 | 2001 | 1739 | ID=Msa1432780-mRNA-1:exon:8284;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 2412 | 2434 | 2412 | ID=Msa1432780-mRNA-1:exon:8283;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 2587 | 2682 | 2587 | ID=Msa1432780-mRNA-1:exon:8282;Parent=Msa1432780-mRNA-1 |
| tig0027174 | exon | 3658 | 3955 | 3658 | ID=Msa1432780-mRNA-1:exon:8281;Parent=Msa1432780-mRNA-1 |
| tig0027174 | five_prime_UTR | 3751 | 3955 | 3751 | ID=Msa1432780-mRNA-1:five_prime_utr;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 3658 | 3750 | 3658 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 2587 | 2682 | 2587 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 2412 | 2434 | 2412 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 1739 | 2001 | 1739 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 1507 | 1629 | 1507 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 1098 | 1186 | 1098 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 859 | 964 | 859 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| tig0027174 | CDS | 504 | 619 | 504 | ID=Msa1432780-mRNA-1:cds;Parent=Msa1432780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
