AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559790 MtrunA17_Chr4g0049711 97.358 265 6 1 1 265 1 264 0.0 529
Msa0559790 MtrunA17_Chr2g0279701 58.750 240 96 1 9 248 8 244 3.49e-102 297
Msa0559790 MtrunA17_Chr5g0437541 73.759 141 35 1 109 249 3 141 4.14e-72 217
Msa0559790 MtrunA17_Chr5g0437551 69.091 110 32 1 1 110 1 108 2.76e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559790 AT2G23970.1 50.607 247 120 1 4 248 1 247 4.34e-90 267
Msa0559790 AT4G30550.1 46.154 247 130 1 4 247 3 249 6.56e-82 246
Msa0559790 AT4G30540.1 48.571 245 126 0 4 248 1 245 3.21e-80 242
Msa0559790 AT2G23960.1 44.672 244 133 1 5 246 1 244 3.45e-75 229
Msa0559790 AT4G30530.1 44.628 242 132 1 9 248 5 246 7.51e-74 226
Msa0559790 AT2G23960.2 46.635 208 109 1 5 210 1 208 5.12e-67 207

Find 94 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCTAAAGTACAAATTTA+TGG 0.123040 4_1:+58970664 Msa0559790:three_prime_UTR
AAAATGTACGGAGGGTATTT+TGG 0.159436 4_1:+58968569 Msa0559790:CDS
TAGGGAGTGGGAAGAGATTT+GGG 0.235069 4_1:+58968510 Msa0559790:CDS
CTCTTCCATGCCTCCTTATC+TGG 0.241065 4_1:-58970299 None:intergenic
AGAGAGAAAGGGAATTGTTT+TGG 0.251545 4_1:-58968366 None:intergenic
TAGATATGGAGATCACATTA+TGG 0.306527 4_1:+58970019 Msa0559790:CDS
GTAGGGAGTGGGAAGAGATT+TGG 0.311768 4_1:+58968509 Msa0559790:CDS
TGGCATTTGCTTTGGTCATC+AGG 0.316497 4_1:+58968799 Msa0559790:CDS
GGAATAGAAAATATAAATAT+TGG 0.322855 4_1:+58970368 Msa0559790:CDS
TGTTAATTTGATTAGATACT+TGG 0.341295 4_1:+58969642 Msa0559790:intron
ATCCCTGTGGCATTGAATAA+TGG 0.342555 4_1:-58969787 None:intergenic
CGTTATTATTGTGAAAGAAA+TGG 0.364184 4_1:+58970347 Msa0559790:CDS
TAGATACTTGGCCGTGCAAT+TGG 0.364461 4_1:+58969654 Msa0559790:intron
GGAATTGAGATGTTTAGATA+TGG 0.367188 4_1:+58970005 Msa0559790:CDS
AAAATCCTTGGCATTTGCTT+TGG 0.382494 4_1:+58968791 Msa0559790:CDS
AGATTCAATTCATCATCCTT+TGG 0.389173 4_1:-58968662 None:intergenic
TGAAAGCTGGGATGTGTATA+AGG 0.394224 4_1:+58968622 Msa0559790:CDS
TCTCCAACTGGCTGGGACAT+TGG 0.414581 4_1:+58969693 Msa0559790:CDS
AGATATGGAGATCACATTAT+GGG 0.414653 4_1:+58970020 Msa0559790:CDS
AATATTTACAATTTCACATC+AGG 0.432082 4_1:-58970535 None:intergenic
TGGAGGAAGAAGGTGAAAGC+TGG 0.433224 4_1:+58968609 Msa0559790:CDS
AAACTTTGCTATGAGATTGA+AGG 0.451687 4_1:+58970256 Msa0559790:CDS
TTTCCATTATTCAATGCCAC+AGG 0.474211 4_1:+58969784 Msa0559790:CDS
TGGAGAAAATGGTAGGGAGT+GGG 0.479980 4_1:+58968498 Msa0559790:CDS
GACATGAACAAGAAAATCCT+TGG 0.480295 4_1:+58968779 Msa0559790:CDS
TTAATTAAGAAAATGTAGAA+AGG 0.481066 4_1:+58970613 Msa0559790:three_prime_UTR
TGAAGGAGAAGGCTGGTATG+TGG 0.491137 4_1:+58970273 Msa0559790:CDS
AAAGAAATCCCAAATTCAAA+AGG 0.492126 4_1:-58970592 None:intergenic
TGGGGTATTTGTGAGAATGT+TGG 0.492454 4_1:+58968589 Msa0559790:CDS
AAGGTGACTCGATCTCCAAC+TGG 0.496252 4_1:+58969681 Msa0559790:CDS
TGACTCGATCTCCAACTGGC+TGG 0.497560 4_1:+58969685 Msa0559790:CDS
GACTCGATCTCCAACTGGCT+GGG 0.497877 4_1:+58969686 Msa0559790:CDS
GTGAGAATGTTGGAGGAAGA+AGG 0.500993 4_1:+58968599 Msa0559790:CDS
TTGGTGGTATATTCTAAAGT+AGG 0.501303 4_1:+58970387 Msa0559790:exon
TGAATAATGGAAAGCCTCGT+TGG 0.506469 4_1:-58969774 None:intergenic
GCAATCACTTCAGCCTTGGC+AGG 0.507796 4_1:-58969966 None:intergenic
GACAAAGGAGATGGCAAAGA+GGG 0.513633 4_1:-58969738 None:intergenic
TTAAGGATGGAGAAAATGGT+AGG 0.514388 4_1:+58968491 Msa0559790:exon
AGGGTGATAATGTTATGTTT+CGG 0.519404 4_1:-58969719 None:intergenic
ATACTTGGCCGTGCAATTGG+AGG 0.519944 4_1:+58969657 Msa0559790:CDS
ATGTGCCACACCTTAATTAG+TGG 0.525601 4_1:-58970449 None:intergenic
TGGTATGTGGGAGCCAGATA+AGG 0.526816 4_1:+58970286 Msa0559790:CDS
ATTGCTAAATCAGATAAGAC+TGG 0.527568 4_1:+58969984 Msa0559790:CDS
ATTCTAAAGTAGGAATCGTA+TGG 0.528680 4_1:+58970397 Msa0559790:exon
TTTAGCAATCACTTCAGCCT+TGG 0.530782 4_1:-58969970 None:intergenic
TAGAGTACTCAGGATGACCT+TGG 0.533908 4_1:-58970046 None:intergenic
ATGGAGAAAATGGTAGGGAG+TGG 0.538240 4_1:+58968497 Msa0559790:CDS
TATTCAATGCCACAGGGATG+AGG 0.540762 4_1:+58969791 Msa0559790:CDS
AACACATGCATCTAGCTAGC+TGG 0.545938 4_1:-58970475 None:intergenic
TGCTATGAGATTGAAGGAGA+AGG 0.548803 4_1:+58970262 Msa0559790:CDS
GATGAATTGAATCTGTATGA+TGG 0.549776 4_1:+58968671 Msa0559790:CDS
TGAAATTTCGCTGAATAAGA+CGG 0.555005 4_1:-58970094 None:intergenic
ATAGAAAATATAAATATTGG+TGG 0.558147 4_1:+58970371 Msa0559790:CDS
TTAGAGGGAGAAAGCATCAC+CGG 0.558875 4_1:+58968440 Msa0559790:five_prime_UTR
GCTAAGAGAGCTACCTGCCA+AGG 0.562053 4_1:+58969953 Msa0559790:intron
TGTGCCACACCTTAATTAGT+GGG 0.563093 4_1:-58970448 None:intergenic
TCAAGAGAAGACAAAGGAGA+TGG 0.563452 4_1:-58969747 None:intergenic
GGAGGAAGAAGGTGAAAGCT+GGG 0.565836 4_1:+58968610 Msa0559790:CDS
ACTATGCATCAGCTTCCTCA+AGG 0.566000 4_1:+58970322 Msa0559790:CDS
ACACCAATGTCCCAGCCAGT+TGG 0.568855 4_1:-58969696 None:intergenic
CACAATAATAACGACCCTTG+AGG 0.576322 4_1:-58970337 None:intergenic
GAAGGAGAAGGCTGGTATGT+GGG 0.577034 4_1:+58970274 Msa0559790:CDS
TAAGGATGGAGAAAATGGTA+GGG 0.582135 4_1:+58968492 Msa0559790:exon
GAATATGTGAAGAAAATGTA+CGG 0.585607 4_1:+58968557 Msa0559790:CDS
TGGCCGTGCAATTGGAGGGA+AGG 0.591128 4_1:+58969662 Msa0559790:CDS
TACTTGGCCGTGCAATTGGA+GGG 0.593875 4_1:+58969658 Msa0559790:CDS
GATCACATTATGGGAATCCA+AGG 0.596532 4_1:+58970029 Msa0559790:CDS
ATGAGATTGAAGGAGAAGGC+TGG 0.598435 4_1:+58970266 Msa0559790:CDS
ATGTGAAGAAAATGTACGGA+GGG 0.598596 4_1:+58968561 Msa0559790:CDS
AGACAAAGGAGATGGCAAAG+AGG 0.600946 4_1:-58969739 None:intergenic
TTCCATTATTCAATGCCACA+GGG 0.604354 4_1:+58969785 Msa0559790:CDS
AAAAGTTAATAGGAAACTAA+GGG 0.606602 4_1:+58970421 Msa0559790:three_prime_UTR
ATGCACATGGAAATGATACA+TGG 0.606888 4_1:+58968720 Msa0559790:CDS
TCACCTTCCCTCCAATTGCA+CGG 0.609277 4_1:-58969665 None:intergenic
GGGAGCCAGATAAGGAGGCA+TGG 0.620410 4_1:+58970294 Msa0559790:CDS
GGTATTTGTGAGAATGTTGG+AGG 0.624181 4_1:+58968592 Msa0559790:CDS
TAAGAAAATGTAGAAAGGCG+TGG 0.624356 4_1:+58970618 Msa0559790:three_prime_UTR
GGAAGTTCAAGAGAAGACAA+AGG 0.628531 4_1:-58969753 None:intergenic
AGGGAGTGGGAAGAGATTTG+GGG 0.635409 4_1:+58968511 Msa0559790:CDS
CTATGCATCAGCTTCCTCAA+GGG 0.636887 4_1:+58970323 Msa0559790:CDS
AGAATGTCTTTAGAGTACTC+AGG 0.643445 4_1:-58970056 None:intergenic
TATGTGGGAGCCAGATAAGG+AGG 0.645828 4_1:+58970289 Msa0559790:CDS
CTTCTCTTGAACTTCCAACG+AGG 0.646837 4_1:+58969760 Msa0559790:CDS
GTGCCACACCTTAATTAGTG+GGG 0.647793 4_1:-58970447 None:intergenic
GATGACCAAAGCAAATGCCA+AGG 0.653162 4_1:-58968796 None:intergenic
GGCGCGTGGAGAGTTTCCAA+AGG 0.654333 4_1:+58968646 Msa0559790:CDS
TATTCAGCGAAATTTCATCA+CGG 0.662548 4_1:+58970100 Msa0559790:CDS
TATGTGAAGAAAATGTACGG+AGG 0.666492 4_1:+58968560 Msa0559790:CDS
TGCCACACCTTAATTAGTGG+GGG 0.683463 4_1:-58970446 None:intergenic
TGCACATGGAAATGATACAT+GGG 0.699531 4_1:+58968721 Msa0559790:CDS
GATGTGTATAAGGTGGCGCG+TGG 0.734044 4_1:+58968632 Msa0559790:CDS
GGTAGTTGTAGTGATGCACA+TGG 0.738222 4_1:+58968707 Msa0559790:CDS
GTACACACACCTCATCCCTG+TGG 0.760386 4_1:-58969800 None:intergenic
AAGCTGGGATGTGTATAAGG+TGG 0.761338 4_1:+58968625 Msa0559790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATAATGTTAATTTAATA+AGG - chr4_1:58969841-58969860 None:intergenic 10.0%
!! ATAAATAAATGAAGTAATAA+AGG - chr4_1:58970143-58970162 None:intergenic 10.0%
!! TATTACTTCATTTATTTATT+TGG + chr4_1:58970144-58970163 Msa0559790:intron 10.0%
!!! ATGATAATGTTAATTTAATA+AGG - chr4_1:58969841-58969860 None:intergenic 10.0%
!! ATAAATAAATGAAGTAATAA+AGG - chr4_1:58970143-58970162 None:intergenic 10.0%
!! TATTACTTCATTTATTTATT+TGG + chr4_1:58970144-58970163 Msa0559790:intron 10.0%
!!! TAAAAAACAACATTTTTAGA+GGG + chr4_1:58968425-58968444 Msa0559790:five_prime_UTR 15.0%
!!! ATCAAAAATCAAATCTTTTA+AGG + chr4_1:58968474-58968493 Msa0559790:five_prime_UTR 15.0%
!! AGTGATTTAATTACTAAATA+TGG - chr4_1:58968852-58968871 None:intergenic 15.0%
!! ATATTTAGTAATTAAATCAC+TGG + chr4_1:58968851-58968870 Msa0559790:intron 15.0%
!! AAATAACAAAATTACTAGAA+AGG - chr4_1:58968931-58968950 None:intergenic 15.0%
!! TATCACTATTAAAAAAACAT+TGG + chr4_1:58970177-58970196 Msa0559790:intron 15.0%
!! TTAATCGTAATTAAATTTAC+TGG + chr4_1:58970216-58970235 Msa0559790:intron 15.0%
!! GGAATAGAAAATATAAATAT+TGG + chr4_1:58970368-58970387 Msa0559790:CDS 15.0%
!! ATAGAAAATATAAATATTGG+TGG + chr4_1:58970371-58970390 Msa0559790:CDS 15.0%
!! TTAATTAAGAAAATGTAGAA+AGG + chr4_1:58970613-58970632 Msa0559790:three_prime_UTR 15.0%
!!! TAAAAAACAACATTTTTAGA+GGG + chr4_1:58968425-58968444 Msa0559790:five_prime_UTR 15.0%
!!! ATCAAAAATCAAATCTTTTA+AGG + chr4_1:58968474-58968493 Msa0559790:five_prime_UTR 15.0%
!! AGTGATTTAATTACTAAATA+TGG - chr4_1:58968852-58968871 None:intergenic 15.0%
!! ATATTTAGTAATTAAATCAC+TGG + chr4_1:58968851-58968870 Msa0559790:intron 15.0%
!! AAATAACAAAATTACTAGAA+AGG - chr4_1:58968931-58968950 None:intergenic 15.0%
!! TATCACTATTAAAAAAACAT+TGG + chr4_1:58970177-58970196 Msa0559790:intron 15.0%
!! TTAATCGTAATTAAATTTAC+TGG + chr4_1:58970216-58970235 Msa0559790:intron 15.0%
!! GGAATAGAAAATATAAATAT+TGG + chr4_1:58970368-58970387 Msa0559790:CDS 15.0%
!! ATAGAAAATATAAATATTGG+TGG + chr4_1:58970371-58970390 Msa0559790:CDS 15.0%
!! TTAATTAAGAAAATGTAGAA+AGG + chr4_1:58970613-58970632 Msa0559790:three_prime_UTR 15.0%
!!! CTAAAAAACAACATTTTTAG+AGG + chr4_1:58968424-58968443 Msa0559790:five_prime_UTR 20.0%
!!! AAGATTTGATTTTTGATTCT+GGG - chr4_1:58968471-58968490 None:intergenic 20.0%
!!! AAAGATTTGATTTTTGATTC+TGG - chr4_1:58968472-58968491 None:intergenic 20.0%
!!! AAAATCAAATCTTTTAAGGA+TGG + chr4_1:58968478-58968497 Msa0559790:exon 20.0%
!!! AAAAATGAAAGGTTTGAAAT+GGG - chr4_1:58968906-58968925 None:intergenic 20.0%
!! AAAAAATGAAAGGTTTGAAA+TGG - chr4_1:58968907-58968926 None:intergenic 20.0%
!! GTTAAATGTTACTAGTAATA+TGG - chr4_1:58969294-58969313 None:intergenic 20.0%
!! TATTACTAGTAACATTTAAC+CGG + chr4_1:58969294-58969313 Msa0559790:intron 20.0%
!! CTATAAAGTTAATTAATGGT+AGG - chr4_1:58969591-58969610 None:intergenic 20.0%
!! ACCATTAATTAACTTTATAG+AGG + chr4_1:58969591-58969610 Msa0559790:intron 20.0%
!! TCCTCTATAAAGTTAATTAA+TGG - chr4_1:58969595-58969614 None:intergenic 20.0%
!!! TGTTAATTTGATTAGATACT+TGG + chr4_1:58969642-58969661 Msa0559790:intron 20.0%
!!! TTTTTTTTTAATCATAGCAC+AGG + chr4_1:58969879-58969898 Msa0559790:intron 20.0%
!!! TCTTGATATATTTCTTCTTT+TGG + chr4_1:58969917-58969936 Msa0559790:intron 20.0%
!! AAGTAATAAAGGAAAATGAT+GGG - chr4_1:58970132-58970151 None:intergenic 20.0%
!! AAAAAGTTAATAGGAAACTA+AGG + chr4_1:58970420-58970439 Msa0559790:three_prime_UTR 20.0%
!! AAAAGTTAATAGGAAACTAA+GGG + chr4_1:58970421-58970440 Msa0559790:three_prime_UTR 20.0%
!! AATATTTACAATTTCACATC+AGG - chr4_1:58970538-58970557 None:intergenic 20.0%
!!! CTAAAAAACAACATTTTTAG+AGG + chr4_1:58968424-58968443 Msa0559790:five_prime_UTR 20.0%
!!! AAGATTTGATTTTTGATTCT+GGG - chr4_1:58968471-58968490 None:intergenic 20.0%
!!! AAAGATTTGATTTTTGATTC+TGG - chr4_1:58968472-58968491 None:intergenic 20.0%
!!! AAAATCAAATCTTTTAAGGA+TGG + chr4_1:58968478-58968497 Msa0559790:exon 20.0%
!!! AAAAATGAAAGGTTTGAAAT+GGG - chr4_1:58968906-58968925 None:intergenic 20.0%
!! AAAAAATGAAAGGTTTGAAA+TGG - chr4_1:58968907-58968926 None:intergenic 20.0%
!! GTTAAATGTTACTAGTAATA+TGG - chr4_1:58969294-58969313 None:intergenic 20.0%
!! TATTACTAGTAACATTTAAC+CGG + chr4_1:58969294-58969313 Msa0559790:intron 20.0%
!! CTATAAAGTTAATTAATGGT+AGG - chr4_1:58969591-58969610 None:intergenic 20.0%
!! ACCATTAATTAACTTTATAG+AGG + chr4_1:58969591-58969610 Msa0559790:intron 20.0%
!! TCCTCTATAAAGTTAATTAA+TGG - chr4_1:58969595-58969614 None:intergenic 20.0%
!!! TGTTAATTTGATTAGATACT+TGG + chr4_1:58969642-58969661 Msa0559790:intron 20.0%
!!! TTTTTTTTTAATCATAGCAC+AGG + chr4_1:58969879-58969898 Msa0559790:intron 20.0%
!!! TCTTGATATATTTCTTCTTT+TGG + chr4_1:58969917-58969936 Msa0559790:intron 20.0%
!! AAGTAATAAAGGAAAATGAT+GGG - chr4_1:58970132-58970151 None:intergenic 20.0%
!! AAAAAGTTAATAGGAAACTA+AGG + chr4_1:58970420-58970439 Msa0559790:three_prime_UTR 20.0%
!! AAAAGTTAATAGGAAACTAA+GGG + chr4_1:58970421-58970440 Msa0559790:three_prime_UTR 20.0%
!! AATATTTACAATTTCACATC+AGG - chr4_1:58970538-58970557 None:intergenic 20.0%
! GAATATGTGAAGAAAATGTA+CGG + chr4_1:58968557-58968576 Msa0559790:CDS 25.0%
! CTAGAAAGGTAAAAAATGAA+AGG - chr4_1:58968917-58968936 None:intergenic 25.0%
!!! ATTTTAGTGCTAGTATAACA+TGG + chr4_1:58968971-58968990 Msa0559790:intron 25.0%
! ACTTTCAAAAAAAAGGAACA+GGG + chr4_1:58969006-58969025 Msa0559790:intron 25.0%
! AAAATACCGTAGAAATTCTT+AGG + chr4_1:58969092-58969111 Msa0559790:intron 25.0%
! AATGTTACTAGTAATATGGA+TGG - chr4_1:58969290-58969309 None:intergenic 25.0%
!! ATATAAGTGCTTTATTACCA+TGG + chr4_1:58969479-58969498 Msa0559790:intron 25.0%
! TACAAAAAAAGACAAAACCA+TGG - chr4_1:58969499-58969518 None:intergenic 25.0%
! AGTAATAAAGGAAAATGATG+GGG - chr4_1:58970131-58970150 None:intergenic 25.0%
! GAAGTAATAAAGGAAAATGA+TGG - chr4_1:58970133-58970152 None:intergenic 25.0%
! CGTTATTATTGTGAAAGAAA+TGG + chr4_1:58970347-58970366 Msa0559790:CDS 25.0%
! ATCGTATGGAAAAAGTTAAT+AGG + chr4_1:58970411-58970430 Msa0559790:three_prime_UTR 25.0%
!! AGTTTTCTTCCTTTTGAATT+TGG + chr4_1:58970583-58970602 Msa0559790:three_prime_UTR 25.0%
!! GTTTTCTTCCTTTTGAATTT+GGG + chr4_1:58970584-58970603 Msa0559790:three_prime_UTR 25.0%
! AAAGAAATCCCAAATTCAAA+AGG - chr4_1:58970595-58970614 None:intergenic 25.0%
! GAATATGTGAAGAAAATGTA+CGG + chr4_1:58968557-58968576 Msa0559790:CDS 25.0%
! CTAGAAAGGTAAAAAATGAA+AGG - chr4_1:58968917-58968936 None:intergenic 25.0%
!!! ATTTTAGTGCTAGTATAACA+TGG + chr4_1:58968971-58968990 Msa0559790:intron 25.0%
! ACTTTCAAAAAAAAGGAACA+GGG + chr4_1:58969006-58969025 Msa0559790:intron 25.0%
! AAAATACCGTAGAAATTCTT+AGG + chr4_1:58969092-58969111 Msa0559790:intron 25.0%
! AATGTTACTAGTAATATGGA+TGG - chr4_1:58969290-58969309 None:intergenic 25.0%
!! ATATAAGTGCTTTATTACCA+TGG + chr4_1:58969479-58969498 Msa0559790:intron 25.0%
! TACAAAAAAAGACAAAACCA+TGG - chr4_1:58969499-58969518 None:intergenic 25.0%
! AGTAATAAAGGAAAATGATG+GGG - chr4_1:58970131-58970150 None:intergenic 25.0%
! GAAGTAATAAAGGAAAATGA+TGG - chr4_1:58970133-58970152 None:intergenic 25.0%
! CGTTATTATTGTGAAAGAAA+TGG + chr4_1:58970347-58970366 Msa0559790:CDS 25.0%
! ATCGTATGGAAAAAGTTAAT+AGG + chr4_1:58970411-58970430 Msa0559790:three_prime_UTR 25.0%
!! AGTTTTCTTCCTTTTGAATT+TGG + chr4_1:58970583-58970602 Msa0559790:three_prime_UTR 25.0%
!! GTTTTCTTCCTTTTGAATTT+GGG + chr4_1:58970584-58970603 Msa0559790:three_prime_UTR 25.0%
! AAAGAAATCCCAAATTCAAA+AGG - chr4_1:58970595-58970614 None:intergenic 25.0%
!! TTTTAGAGAGAGAAAGTTCA+AGG - chr4_1:58968410-58968429 None:intergenic 30.0%
!! TCTTTTAAGGATGGAGAAAA+TGG + chr4_1:58968487-58968506 Msa0559790:exon 30.0%
AGATTCAATTCATCATCCTT+TGG - chr4_1:58968665-58968684 None:intergenic 30.0%
GATGAATTGAATCTGTATGA+TGG + chr4_1:58968671-58968690 Msa0559790:CDS 30.0%
!!! CTGTTCCTTTTTTTTGAAAG+TGG - chr4_1:58969007-58969026 None:intergenic 30.0%
CACTTTCAAAAAAAAGGAAC+AGG + chr4_1:58969005-58969024 Msa0559790:intron 30.0%
TAGTGCGTTAAATATTCCAA+AGG - chr4_1:58969131-58969150 None:intergenic 30.0%
! TCATTATCTACGTTTTGTCA+AGG - chr4_1:58969217-58969236 None:intergenic 30.0%
!! TTATGATATTTTGAGCTGTC+CGG - chr4_1:58969316-58969335 None:intergenic 30.0%
ATGTGAAGATTGCATCATAT+GGG - chr4_1:58969417-58969436 None:intergenic 30.0%
CTTCTAATTCAGCTTTACAT+TGG - chr4_1:58969532-58969551 None:intergenic 30.0%
! AGGGTGATAATGTTATGTTT+CGG - chr4_1:58969722-58969741 None:intergenic 30.0%
ATTGCTAAATCAGATAAGAC+TGG + chr4_1:58969984-58970003 Msa0559790:CDS 30.0%
GGAATTGAGATGTTTAGATA+TGG + chr4_1:58970005-58970024 Msa0559790:CDS 30.0%
TAGATATGGAGATCACATTA+TGG + chr4_1:58970019-58970038 Msa0559790:CDS 30.0%
AGATATGGAGATCACATTAT+GGG + chr4_1:58970020-58970039 Msa0559790:CDS 30.0%
TGAAATTTCGCTGAATAAGA+CGG - chr4_1:58970097-58970116 None:intergenic 30.0%
TATTCAGCGAAATTTCATCA+CGG + chr4_1:58970100-58970119 Msa0559790:CDS 30.0%
! AAACTTTGCTATGAGATTGA+AGG + chr4_1:58970256-58970275 Msa0559790:CDS 30.0%
!! TTGGTGGTATATTCTAAAGT+AGG + chr4_1:58970387-58970406 Msa0559790:exon 30.0%
!! ATTCTAAAGTAGGAATCGTA+TGG + chr4_1:58970397-58970416 Msa0559790:exon 30.0%
!! TTTTAGAGAGAGAAAGTTCA+AGG - chr4_1:58968410-58968429 None:intergenic 30.0%
!! TCTTTTAAGGATGGAGAAAA+TGG + chr4_1:58968487-58968506 Msa0559790:exon 30.0%
AGATTCAATTCATCATCCTT+TGG - chr4_1:58968665-58968684 None:intergenic 30.0%
GATGAATTGAATCTGTATGA+TGG + chr4_1:58968671-58968690 Msa0559790:CDS 30.0%
!!! CTGTTCCTTTTTTTTGAAAG+TGG - chr4_1:58969007-58969026 None:intergenic 30.0%
CACTTTCAAAAAAAAGGAAC+AGG + chr4_1:58969005-58969024 Msa0559790:intron 30.0%
TAGTGCGTTAAATATTCCAA+AGG - chr4_1:58969131-58969150 None:intergenic 30.0%
! TCATTATCTACGTTTTGTCA+AGG - chr4_1:58969217-58969236 None:intergenic 30.0%
!! TTATGATATTTTGAGCTGTC+CGG - chr4_1:58969316-58969335 None:intergenic 30.0%
ATGTGAAGATTGCATCATAT+GGG - chr4_1:58969417-58969436 None:intergenic 30.0%
CTTCTAATTCAGCTTTACAT+TGG - chr4_1:58969532-58969551 None:intergenic 30.0%
! AGGGTGATAATGTTATGTTT+CGG - chr4_1:58969722-58969741 None:intergenic 30.0%
ATTGCTAAATCAGATAAGAC+TGG + chr4_1:58969984-58970003 Msa0559790:CDS 30.0%
GGAATTGAGATGTTTAGATA+TGG + chr4_1:58970005-58970024 Msa0559790:CDS 30.0%
TAGATATGGAGATCACATTA+TGG + chr4_1:58970019-58970038 Msa0559790:CDS 30.0%
AGATATGGAGATCACATTAT+GGG + chr4_1:58970020-58970039 Msa0559790:CDS 30.0%
TGAAATTTCGCTGAATAAGA+CGG - chr4_1:58970097-58970116 None:intergenic 30.0%
TATTCAGCGAAATTTCATCA+CGG + chr4_1:58970100-58970119 Msa0559790:CDS 30.0%
! AAACTTTGCTATGAGATTGA+AGG + chr4_1:58970256-58970275 Msa0559790:CDS 30.0%
!! TTGGTGGTATATTCTAAAGT+AGG + chr4_1:58970387-58970406 Msa0559790:exon 30.0%
!! ATTCTAAAGTAGGAATCGTA+TGG + chr4_1:58970397-58970416 Msa0559790:exon 30.0%
! AGAGAGAAAGGGAATTGTTT+TGG - chr4_1:58968369-58968388 None:intergenic 35.0%
!! TTTTTGATTCTGGGTTTCTC+CGG - chr4_1:58968462-58968481 None:intergenic 35.0%
TTAAGGATGGAGAAAATGGT+AGG + chr4_1:58968491-58968510 Msa0559790:exon 35.0%
TAAGGATGGAGAAAATGGTA+GGG + chr4_1:58968492-58968511 Msa0559790:exon 35.0%
TATGTGAAGAAAATGTACGG+AGG + chr4_1:58968560-58968579 Msa0559790:CDS 35.0%
ATGTGAAGAAAATGTACGGA+GGG + chr4_1:58968561-58968580 Msa0559790:CDS 35.0%
!!! AAAATGTACGGAGGGTATTT+TGG + chr4_1:58968569-58968588 Msa0559790:CDS 35.0%
!!! AAATGTACGGAGGGTATTTT+GGG + chr4_1:58968570-58968589 Msa0559790:CDS 35.0%
!!! TATGATGGTTTTGTGATCAC+TGG + chr4_1:58968686-58968705 Msa0559790:CDS 35.0%
ATGCACATGGAAATGATACA+TGG + chr4_1:58968720-58968739 Msa0559790:CDS 35.0%
TGCACATGGAAATGATACAT+GGG + chr4_1:58968721-58968740 Msa0559790:CDS 35.0%
GACATGAACAAGAAAATCCT+TGG + chr4_1:58968779-58968798 Msa0559790:CDS 35.0%
AAAATCCTTGGCATTTGCTT+TGG + chr4_1:58968791-58968810 Msa0559790:CDS 35.0%
GTGGTCCACTTTCAAAAAAA+AGG + chr4_1:58968999-58969018 Msa0559790:intron 35.0%
AACAGGGATAAATACTGATG+TGG + chr4_1:58969022-58969041 Msa0559790:intron 35.0%
ACCAGTCCTAAGAATTTCTA+CGG - chr4_1:58969101-58969120 None:intergenic 35.0%
! TAACGCACTATACTCTAAAG+TGG + chr4_1:58969141-58969160 Msa0559790:intron 35.0%
! CGTTACTTTAGTTGTTCGTT+TGG + chr4_1:58969242-58969261 Msa0559790:intron 35.0%
ATCACACTTGTCTATATGCA+TGG + chr4_1:58969391-58969410 Msa0559790:intron 35.0%
CATGTGAAGATTGCATCATA+TGG - chr4_1:58969418-58969437 None:intergenic 35.0%
TTTCCATTATTCAATGCCAC+AGG + chr4_1:58969784-58969803 Msa0559790:CDS 35.0%
TTCCATTATTCAATGCCACA+GGG + chr4_1:58969785-58969804 Msa0559790:CDS 35.0%
!! AGAATGTCTTTAGAGTACTC+AGG - chr4_1:58970059-58970078 None:intergenic 35.0%
! TTACTGGCTAATGTAATGAC+AGG + chr4_1:58970232-58970251 Msa0559790:intron 35.0%
TAAGAAAATGTAGAAAGGCG+TGG + chr4_1:58970618-58970637 Msa0559790:three_prime_UTR 35.0%
! AGAGAGAAAGGGAATTGTTT+TGG - chr4_1:58968369-58968388 None:intergenic 35.0%
!! TTTTTGATTCTGGGTTTCTC+CGG - chr4_1:58968462-58968481 None:intergenic 35.0%
TTAAGGATGGAGAAAATGGT+AGG + chr4_1:58968491-58968510 Msa0559790:exon 35.0%
TAAGGATGGAGAAAATGGTA+GGG + chr4_1:58968492-58968511 Msa0559790:exon 35.0%
TATGTGAAGAAAATGTACGG+AGG + chr4_1:58968560-58968579 Msa0559790:CDS 35.0%
ATGTGAAGAAAATGTACGGA+GGG + chr4_1:58968561-58968580 Msa0559790:CDS 35.0%
!!! AAAATGTACGGAGGGTATTT+TGG + chr4_1:58968569-58968588 Msa0559790:CDS 35.0%
!!! AAATGTACGGAGGGTATTTT+GGG + chr4_1:58968570-58968589 Msa0559790:CDS 35.0%
!!! TATGATGGTTTTGTGATCAC+TGG + chr4_1:58968686-58968705 Msa0559790:CDS 35.0%
ATGCACATGGAAATGATACA+TGG + chr4_1:58968720-58968739 Msa0559790:CDS 35.0%
TGCACATGGAAATGATACAT+GGG + chr4_1:58968721-58968740 Msa0559790:CDS 35.0%
GACATGAACAAGAAAATCCT+TGG + chr4_1:58968779-58968798 Msa0559790:CDS 35.0%
AAAATCCTTGGCATTTGCTT+TGG + chr4_1:58968791-58968810 Msa0559790:CDS 35.0%
GTGGTCCACTTTCAAAAAAA+AGG + chr4_1:58968999-58969018 Msa0559790:intron 35.0%
AACAGGGATAAATACTGATG+TGG + chr4_1:58969022-58969041 Msa0559790:intron 35.0%
ACCAGTCCTAAGAATTTCTA+CGG - chr4_1:58969101-58969120 None:intergenic 35.0%
! TAACGCACTATACTCTAAAG+TGG + chr4_1:58969141-58969160 Msa0559790:intron 35.0%
! CGTTACTTTAGTTGTTCGTT+TGG + chr4_1:58969242-58969261 Msa0559790:intron 35.0%
ATCACACTTGTCTATATGCA+TGG + chr4_1:58969391-58969410 Msa0559790:intron 35.0%
CATGTGAAGATTGCATCATA+TGG - chr4_1:58969418-58969437 None:intergenic 35.0%
TTTCCATTATTCAATGCCAC+AGG + chr4_1:58969784-58969803 Msa0559790:CDS 35.0%
TTCCATTATTCAATGCCACA+GGG + chr4_1:58969785-58969804 Msa0559790:CDS 35.0%
!! AGAATGTCTTTAGAGTACTC+AGG - chr4_1:58970059-58970078 None:intergenic 35.0%
! TTACTGGCTAATGTAATGAC+AGG + chr4_1:58970232-58970251 Msa0559790:intron 35.0%
TAAGAAAATGTAGAAAGGCG+TGG + chr4_1:58970618-58970637 Msa0559790:three_prime_UTR 35.0%
GAGATTGAGAGAGAGAGAAA+GGG - chr4_1:58968380-58968399 None:intergenic 40.0%
AGAGATTGAGAGAGAGAGAA+AGG - chr4_1:58968381-58968400 None:intergenic 40.0%
!!! AATGTACGGAGGGTATTTTG+GGG + chr4_1:58968571-58968590 Msa0559790:CDS 40.0%
! TGGGGTATTTGTGAGAATGT+TGG + chr4_1:58968589-58968608 Msa0559790:CDS 40.0%
GGTATTTGTGAGAATGTTGG+AGG + chr4_1:58968592-58968611 Msa0559790:CDS 40.0%
TGAAAGCTGGGATGTGTATA+AGG + chr4_1:58968622-58968641 Msa0559790:CDS 40.0%
!!! TTTTTTGAAAGTGGACCACC+TGG - chr4_1:58968998-58969017 None:intergenic 40.0%
TAACTAACAGCTTGACGTGT+CGG + chr4_1:58969052-58969071 Msa0559790:intron 40.0%
ACCGTAGAAATTCTTAGGAC+TGG + chr4_1:58969097-58969116 Msa0559790:intron 40.0%
TCAAGAGAAGACAAAGGAGA+TGG - chr4_1:58969750-58969769 None:intergenic 40.0%
GGAAGTTCAAGAGAAGACAA+AGG - chr4_1:58969756-58969775 None:intergenic 40.0%
! TGAATAATGGAAAGCCTCGT+TGG - chr4_1:58969777-58969796 None:intergenic 40.0%
! ATCCCTGTGGCATTGAATAA+TGG - chr4_1:58969790-58969809 None:intergenic 40.0%
TTTAGCAATCACTTCAGCCT+TGG - chr4_1:58969973-58969992 None:intergenic 40.0%
GATCACATTATGGGAATCCA+AGG + chr4_1:58970029-58970048 Msa0559790:CDS 40.0%
TGCTATGAGATTGAAGGAGA+AGG + chr4_1:58970262-58970281 Msa0559790:CDS 40.0%
CACAATAATAACGACCCTTG+AGG - chr4_1:58970340-58970359 None:intergenic 40.0%
TGTGCCACACCTTAATTAGT+GGG - chr4_1:58970451-58970470 None:intergenic 40.0%
ATGTGCCACACCTTAATTAG+TGG - chr4_1:58970452-58970471 None:intergenic 40.0%
GAGATTGAGAGAGAGAGAAA+GGG - chr4_1:58968380-58968399 None:intergenic 40.0%
AGAGATTGAGAGAGAGAGAA+AGG - chr4_1:58968381-58968400 None:intergenic 40.0%
!!! AATGTACGGAGGGTATTTTG+GGG + chr4_1:58968571-58968590 Msa0559790:CDS 40.0%
! TGGGGTATTTGTGAGAATGT+TGG + chr4_1:58968589-58968608 Msa0559790:CDS 40.0%
GGTATTTGTGAGAATGTTGG+AGG + chr4_1:58968592-58968611 Msa0559790:CDS 40.0%
TGAAAGCTGGGATGTGTATA+AGG + chr4_1:58968622-58968641 Msa0559790:CDS 40.0%
!!! TTTTTTGAAAGTGGACCACC+TGG - chr4_1:58968998-58969017 None:intergenic 40.0%
TAACTAACAGCTTGACGTGT+CGG + chr4_1:58969052-58969071 Msa0559790:intron 40.0%
ACCGTAGAAATTCTTAGGAC+TGG + chr4_1:58969097-58969116 Msa0559790:intron 40.0%
TCAAGAGAAGACAAAGGAGA+TGG - chr4_1:58969750-58969769 None:intergenic 40.0%
GGAAGTTCAAGAGAAGACAA+AGG - chr4_1:58969756-58969775 None:intergenic 40.0%
! TGAATAATGGAAAGCCTCGT+TGG - chr4_1:58969777-58969796 None:intergenic 40.0%
! ATCCCTGTGGCATTGAATAA+TGG - chr4_1:58969790-58969809 None:intergenic 40.0%
TTTAGCAATCACTTCAGCCT+TGG - chr4_1:58969973-58969992 None:intergenic 40.0%
GATCACATTATGGGAATCCA+AGG + chr4_1:58970029-58970048 Msa0559790:CDS 40.0%
TGCTATGAGATTGAAGGAGA+AGG + chr4_1:58970262-58970281 Msa0559790:CDS 40.0%
CACAATAATAACGACCCTTG+AGG - chr4_1:58970340-58970359 None:intergenic 40.0%
TGTGCCACACCTTAATTAGT+GGG - chr4_1:58970451-58970470 None:intergenic 40.0%
ATGTGCCACACCTTAATTAG+TGG - chr4_1:58970452-58970471 None:intergenic 40.0%
!! TTAGAGGGAGAAAGCATCAC+CGG + chr4_1:58968440-58968459 Msa0559790:five_prime_UTR 45.0%
ATGGAGAAAATGGTAGGGAG+TGG + chr4_1:58968497-58968516 Msa0559790:CDS 45.0%
TGGAGAAAATGGTAGGGAGT+GGG + chr4_1:58968498-58968517 Msa0559790:CDS 45.0%
TAGGGAGTGGGAAGAGATTT+GGG + chr4_1:58968510-58968529 Msa0559790:CDS 45.0%
GTGAGAATGTTGGAGGAAGA+AGG + chr4_1:58968599-58968618 Msa0559790:CDS 45.0%
AAGCTGGGATGTGTATAAGG+TGG + chr4_1:58968625-58968644 Msa0559790:CDS 45.0%
GGTAGTTGTAGTGATGCACA+TGG + chr4_1:58968707-58968726 Msa0559790:CDS 45.0%
GATGACCAAAGCAAATGCCA+AGG - chr4_1:58968799-58968818 None:intergenic 45.0%
TGGCATTTGCTTTGGTCATC+AGG + chr4_1:58968799-58968818 Msa0559790:CDS 45.0%
GTGCTAGTATAACATGGTCC+AGG + chr4_1:58968977-58968996 Msa0559790:intron 45.0%
CTAGTATAACATGGTCCAGG+TGG + chr4_1:58968980-58968999 Msa0559790:intron 45.0%
!! CTTGACGTGTCGGTGTTTTA+TGG + chr4_1:58969062-58969081 Msa0559790:intron 45.0%
TAGATACTTGGCCGTGCAAT+TGG + chr4_1:58969654-58969673 Msa0559790:intron 45.0%
GACAAAGGAGATGGCAAAGA+GGG - chr4_1:58969741-58969760 None:intergenic 45.0%
AGACAAAGGAGATGGCAAAG+AGG - chr4_1:58969742-58969761 None:intergenic 45.0%
CTTCTCTTGAACTTCCAACG+AGG + chr4_1:58969760-58969779 Msa0559790:CDS 45.0%
TATTCAATGCCACAGGGATG+AGG + chr4_1:58969791-58969810 Msa0559790:CDS 45.0%
! TAGAGTACTCAGGATGACCT+TGG - chr4_1:58970049-58970068 None:intergenic 45.0%
ATGAGATTGAAGGAGAAGGC+TGG + chr4_1:58970266-58970285 Msa0559790:CDS 45.0%
ACTATGCATCAGCTTCCTCA+AGG + chr4_1:58970322-58970341 Msa0559790:CDS 45.0%
CTATGCATCAGCTTCCTCAA+GGG + chr4_1:58970323-58970342 Msa0559790:CDS 45.0%
!! AAGGGTACCCCCACTAATTA+AGG + chr4_1:58970439-58970458 Msa0559790:three_prime_UTR 45.0%
TACCCCCACTAATTAAGGTG+TGG + chr4_1:58970444-58970463 Msa0559790:three_prime_UTR 45.0%
TGCCACACCTTAATTAGTGG+GGG - chr4_1:58970449-58970468 None:intergenic 45.0%
GTGCCACACCTTAATTAGTG+GGG - chr4_1:58970450-58970469 None:intergenic 45.0%
AACACATGCATCTAGCTAGC+TGG - chr4_1:58970478-58970497 None:intergenic 45.0%
!! TTAGAGGGAGAAAGCATCAC+CGG + chr4_1:58968440-58968459 Msa0559790:five_prime_UTR 45.0%
ATGGAGAAAATGGTAGGGAG+TGG + chr4_1:58968497-58968516 Msa0559790:CDS 45.0%
TGGAGAAAATGGTAGGGAGT+GGG + chr4_1:58968498-58968517 Msa0559790:CDS 45.0%
TAGGGAGTGGGAAGAGATTT+GGG + chr4_1:58968510-58968529 Msa0559790:CDS 45.0%
GTGAGAATGTTGGAGGAAGA+AGG + chr4_1:58968599-58968618 Msa0559790:CDS 45.0%
AAGCTGGGATGTGTATAAGG+TGG + chr4_1:58968625-58968644 Msa0559790:CDS 45.0%
GGTAGTTGTAGTGATGCACA+TGG + chr4_1:58968707-58968726 Msa0559790:CDS 45.0%
GATGACCAAAGCAAATGCCA+AGG - chr4_1:58968799-58968818 None:intergenic 45.0%
TGGCATTTGCTTTGGTCATC+AGG + chr4_1:58968799-58968818 Msa0559790:CDS 45.0%
GTGCTAGTATAACATGGTCC+AGG + chr4_1:58968977-58968996 Msa0559790:intron 45.0%
CTAGTATAACATGGTCCAGG+TGG + chr4_1:58968980-58968999 Msa0559790:intron 45.0%
!! CTTGACGTGTCGGTGTTTTA+TGG + chr4_1:58969062-58969081 Msa0559790:intron 45.0%
TAGATACTTGGCCGTGCAAT+TGG + chr4_1:58969654-58969673 Msa0559790:intron 45.0%
GACAAAGGAGATGGCAAAGA+GGG - chr4_1:58969741-58969760 None:intergenic 45.0%
AGACAAAGGAGATGGCAAAG+AGG - chr4_1:58969742-58969761 None:intergenic 45.0%
CTTCTCTTGAACTTCCAACG+AGG + chr4_1:58969760-58969779 Msa0559790:CDS 45.0%
TATTCAATGCCACAGGGATG+AGG + chr4_1:58969791-58969810 Msa0559790:CDS 45.0%
! TAGAGTACTCAGGATGACCT+TGG - chr4_1:58970049-58970068 None:intergenic 45.0%
ATGAGATTGAAGGAGAAGGC+TGG + chr4_1:58970266-58970285 Msa0559790:CDS 45.0%
ACTATGCATCAGCTTCCTCA+AGG + chr4_1:58970322-58970341 Msa0559790:CDS 45.0%
CTATGCATCAGCTTCCTCAA+GGG + chr4_1:58970323-58970342 Msa0559790:CDS 45.0%
!! AAGGGTACCCCCACTAATTA+AGG + chr4_1:58970439-58970458 Msa0559790:three_prime_UTR 45.0%
TACCCCCACTAATTAAGGTG+TGG + chr4_1:58970444-58970463 Msa0559790:three_prime_UTR 45.0%
TGCCACACCTTAATTAGTGG+GGG - chr4_1:58970449-58970468 None:intergenic 45.0%
GTGCCACACCTTAATTAGTG+GGG - chr4_1:58970450-58970469 None:intergenic 45.0%
AACACATGCATCTAGCTAGC+TGG - chr4_1:58970478-58970497 None:intergenic 45.0%
GTAGGGAGTGGGAAGAGATT+TGG + chr4_1:58968509-58968528 Msa0559790:CDS 50.0%
AGGGAGTGGGAAGAGATTTG+GGG + chr4_1:58968511-58968530 Msa0559790:CDS 50.0%
TGGAGGAAGAAGGTGAAAGC+TGG + chr4_1:58968609-58968628 Msa0559790:CDS 50.0%
GGAGGAAGAAGGTGAAAGCT+GGG + chr4_1:58968610-58968629 Msa0559790:CDS 50.0%
!! AGGACTGGTTCTCTCTCCTT+TGG + chr4_1:58969112-58969131 Msa0559790:intron 50.0%
ATACTTGGCCGTGCAATTGG+AGG + chr4_1:58969657-58969676 Msa0559790:CDS 50.0%
TACTTGGCCGTGCAATTGGA+GGG + chr4_1:58969658-58969677 Msa0559790:CDS 50.0%
TCACCTTCCCTCCAATTGCA+CGG - chr4_1:58969668-58969687 None:intergenic 50.0%
AAGGTGACTCGATCTCCAAC+TGG + chr4_1:58969681-58969700 Msa0559790:CDS 50.0%
TGAAGGAGAAGGCTGGTATG+TGG + chr4_1:58970273-58970292 Msa0559790:CDS 50.0%
GAAGGAGAAGGCTGGTATGT+GGG + chr4_1:58970274-58970293 Msa0559790:CDS 50.0%
TGGTATGTGGGAGCCAGATA+AGG + chr4_1:58970286-58970305 Msa0559790:CDS 50.0%
TATGTGGGAGCCAGATAAGG+AGG + chr4_1:58970289-58970308 Msa0559790:CDS 50.0%
CTCTTCCATGCCTCCTTATC+TGG - chr4_1:58970302-58970321 None:intergenic 50.0%
GTAGGGAGTGGGAAGAGATT+TGG + chr4_1:58968509-58968528 Msa0559790:CDS 50.0%
AGGGAGTGGGAAGAGATTTG+GGG + chr4_1:58968511-58968530 Msa0559790:CDS 50.0%
TGGAGGAAGAAGGTGAAAGC+TGG + chr4_1:58968609-58968628 Msa0559790:CDS 50.0%
GGAGGAAGAAGGTGAAAGCT+GGG + chr4_1:58968610-58968629 Msa0559790:CDS 50.0%
!! AGGACTGGTTCTCTCTCCTT+TGG + chr4_1:58969112-58969131 Msa0559790:intron 50.0%
ATACTTGGCCGTGCAATTGG+AGG + chr4_1:58969657-58969676 Msa0559790:CDS 50.0%
TACTTGGCCGTGCAATTGGA+GGG + chr4_1:58969658-58969677 Msa0559790:CDS 50.0%
TCACCTTCCCTCCAATTGCA+CGG - chr4_1:58969668-58969687 None:intergenic 50.0%
AAGGTGACTCGATCTCCAAC+TGG + chr4_1:58969681-58969700 Msa0559790:CDS 50.0%
TGAAGGAGAAGGCTGGTATG+TGG + chr4_1:58970273-58970292 Msa0559790:CDS 50.0%
GAAGGAGAAGGCTGGTATGT+GGG + chr4_1:58970274-58970293 Msa0559790:CDS 50.0%
TGGTATGTGGGAGCCAGATA+AGG + chr4_1:58970286-58970305 Msa0559790:CDS 50.0%
TATGTGGGAGCCAGATAAGG+AGG + chr4_1:58970289-58970308 Msa0559790:CDS 50.0%
CTCTTCCATGCCTCCTTATC+TGG - chr4_1:58970302-58970321 None:intergenic 50.0%
GATGTGTATAAGGTGGCGCG+TGG + chr4_1:58968632-58968651 Msa0559790:CDS 55.0%
TGACTCGATCTCCAACTGGC+TGG + chr4_1:58969685-58969704 Msa0559790:CDS 55.0%
GACTCGATCTCCAACTGGCT+GGG + chr4_1:58969686-58969705 Msa0559790:CDS 55.0%
TCTCCAACTGGCTGGGACAT+TGG + chr4_1:58969693-58969712 Msa0559790:CDS 55.0%
ACACCAATGTCCCAGCCAGT+TGG - chr4_1:58969699-58969718 None:intergenic 55.0%
GTACACACACCTCATCCCTG+TGG - chr4_1:58969803-58969822 None:intergenic 55.0%
GCTAAGAGAGCTACCTGCCA+AGG + chr4_1:58969953-58969972 Msa0559790:intron 55.0%
GCAATCACTTCAGCCTTGGC+AGG - chr4_1:58969969-58969988 None:intergenic 55.0%
GATGTGTATAAGGTGGCGCG+TGG + chr4_1:58968632-58968651 Msa0559790:CDS 55.0%
TGACTCGATCTCCAACTGGC+TGG + chr4_1:58969685-58969704 Msa0559790:CDS 55.0%
GACTCGATCTCCAACTGGCT+GGG + chr4_1:58969686-58969705 Msa0559790:CDS 55.0%
TCTCCAACTGGCTGGGACAT+TGG + chr4_1:58969693-58969712 Msa0559790:CDS 55.0%
ACACCAATGTCCCAGCCAGT+TGG - chr4_1:58969699-58969718 None:intergenic 55.0%
GTACACACACCTCATCCCTG+TGG - chr4_1:58969803-58969822 None:intergenic 55.0%
GCTAAGAGAGCTACCTGCCA+AGG + chr4_1:58969953-58969972 Msa0559790:intron 55.0%
GCAATCACTTCAGCCTTGGC+AGG - chr4_1:58969969-58969988 None:intergenic 55.0%
GGCGCGTGGAGAGTTTCCAA+AGG + chr4_1:58968646-58968665 Msa0559790:CDS 60.0%
TGGCCGTGCAATTGGAGGGA+AGG + chr4_1:58969662-58969681 Msa0559790:CDS 60.0%
GGGAGCCAGATAAGGAGGCA+TGG + chr4_1:58970294-58970313 Msa0559790:CDS 60.0%
GGCGCGTGGAGAGTTTCCAA+AGG + chr4_1:58968646-58968665 Msa0559790:CDS 60.0%
TGGCCGTGCAATTGGAGGGA+AGG + chr4_1:58969662-58969681 Msa0559790:CDS 60.0%
GGGAGCCAGATAAGGAGGCA+TGG + chr4_1:58970294-58970313 Msa0559790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58968344 58970683 58968344 ID=Msa0559790;Name=Msa0559790
chr4_1 mRNA 58968344 58970683 58968344 ID=Msa0559790-mRNA-1;Parent=Msa0559790;Name=Msa0559790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=153|1|1|1|1|1|4|280|265
chr4_1 exon 58968344 58968820 58968344 ID=Msa0559790-mRNA-1:exon:18110;Parent=Msa0559790-mRNA-1
chr4_1 exon 58969657 58969812 58969657 ID=Msa0559790-mRNA-1:exon:18111;Parent=Msa0559790-mRNA-1
chr4_1 exon 58969954 58970121 58969954 ID=Msa0559790-mRNA-1:exon:18112;Parent=Msa0559790-mRNA-1
chr4_1 exon 58970254 58970683 58970254 ID=Msa0559790-mRNA-1:exon:18113;Parent=Msa0559790-mRNA-1
chr4_1 five_prime_UTR 58968344 58968496 58968344 ID=Msa0559790-mRNA-1:five_prime_utr;Parent=Msa0559790-mRNA-1
chr4_1 CDS 58968497 58968820 58968497 ID=Msa0559790-mRNA-1:cds;Parent=Msa0559790-mRNA-1
chr4_1 CDS 58969657 58969812 58969657 ID=Msa0559790-mRNA-1:cds;Parent=Msa0559790-mRNA-1
chr4_1 CDS 58969954 58970121 58969954 ID=Msa0559790-mRNA-1:cds;Parent=Msa0559790-mRNA-1
chr4_1 CDS 58970254 58970403 58970254 ID=Msa0559790-mRNA-1:cds;Parent=Msa0559790-mRNA-1
chr4_1 three_prime_UTR 58970404 58970683 58970404 ID=Msa0559790-mRNA-1:three_prime_utr;Parent=Msa0559790-mRNA-1
Gene Sequence

>Msa0559790

ATGGAGAAAATGGTAGGGAGTGGGAAGAGATTTGGGGTGTTGTTATGTGCAGATGATTCAGAATATGTGAAGAAAATGTACGGAGGGTATTTTGGGGTATTTGTGAGAATGTTGGAGGAAGAAGGTGAAAGCTGGGATGTGTATAAGGTGGCGCGTGGAGAGTTTCCAAAGGATGATGAATTGAATCTGTATGATGGTTTTGTGATCACTGGTAGTTGTAGTGATGCACATGGAAATGATACATGGGTCTCTCAACTTCTCAATTTGCTTAAGAAATTGAATGACATGAACAAGAAAATCCTTGGCATTTGCTTTGGTCATCAGATACTTGGCCGTGCAATTGGAGGGAAGGTGACTCGATCTCCAACTGGCTGGGACATTGGTGTCCGAAACATAACATTATCACCCTCTTTGCCATCTCCTTTGTCTTCTCTTGAACTTCCAACGAGGCTTTCCATTATTCAATGCCACAGGGATGAGCTAAGAGAGCTACCTGCCAAGGCTGAAGTGATTGCTAAATCAGATAAGACTGGAATTGAGATGTTTAGATATGGAGATCACATTATGGGAATCCAAGGTCATCCTGAGTACTCTAAAGACATTCTTTTGAACATTATCGACCGTCTTATTCAGCGAAATTTCATCACGGAAAACTTTGCTATGAGATTGAAGGAGAAGGCTGGTATGTGGGAGCCAGATAAGGAGGCATGGAAGAGACTATGCATCAGCTTCCTCAAGGGTCGTTATTATTGTGAAAGAAATGGAATAGAAAATATAAATATTGGTGGTATATTCTAA
Protein sequence

>Msa0559790

MEKMVGSGKRFGVLLCADDSEYVKKMYGGYFGVFVRMLEEEGESWDVYKVARGEFPKDDELNLYDGFVITGSCSDAHGNDTWVSQLLNLLKKLNDMNKKILGICFGHQILGRAIGGKVTRSPTGWDIGVRNITLSPSLPSPLSSLELPTRLSIIQCHRDELRELPAKAEVIAKSDKTGIEMFRYGDHIMGIQGHPEYSKDILLNIIDRLIQRNFITENFAMRLKEKAGMWEPDKEAWKRLCISFLKGRYYCERNGIENINIGGIF*