Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149190 | CAA3000265.1 | 74.863 | 183 | 32 | 4 | 1 | 173 | 1 | 179 | 2.39e-77 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149190 | sp|O81126|RSZ22_ARATH | 60.500 | 200 | 52 | 4 | 1 | 173 | 1 | 200 | 2.72e-58 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149190 | M1CHP4 | 76.757 | 185 | 29 | 3 | 1 | 173 | 1 | 183 | 1.30e-68 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029630 | Msa0149190 | 0.815889 | 7.335869e-52 | -8.615850e-47 |
| Msa0032260 | Msa0149190 | 0.812130 | 4.949879e-51 | -8.615850e-47 |
| Msa0037250 | Msa0149190 | 0.827666 | 1.379252e-54 | -8.615850e-47 |
| Msa0048180 | Msa0149190 | 0.819364 | 1.207619e-52 | -8.615850e-47 |
| Msa0056470 | Msa0149190 | 0.868656 | 5.551002e-66 | -8.615850e-47 |
| Msa0064350 | Msa0149190 | 0.816738 | 4.737856e-52 | -8.615850e-47 |
| Msa0064380 | Msa0149190 | 0.817690 | 2.893586e-52 | -8.615850e-47 |
| Msa0076040 | Msa0149190 | 0.802184 | 6.326823e-49 | -8.615850e-47 |
| Msa0082280 | Msa0149190 | 0.859443 | 4.120808e-63 | -8.615850e-47 |
| Msa0115990 | Msa0149190 | 0.845895 | 3.051951e-59 | -8.615850e-47 |
| Msa0125450 | Msa0149190 | 0.832996 | 6.871478e-56 | -8.615850e-47 |
| Msa0125540 | Msa0149190 | 0.844180 | 8.868356e-59 | -8.615850e-47 |
| Msa0128860 | Msa0149190 | 0.840491 | 8.423690e-58 | -8.615850e-47 |
| Msa0140650 | Msa0149190 | 0.822385 | 2.436273e-53 | -8.615850e-47 |
| Msa0140820 | Msa0149190 | 0.813487 | 2.496762e-51 | -8.615850e-47 |
| Msa0149190 | Msa0149200 | 0.831331 | 1.773574e-55 | -8.615850e-47 |
| Msa0149190 | Msa0149230 | 0.873665 | 1.232911e-67 | -8.615850e-47 |
| Msa0149190 | Msa0165950 | 0.815470 | 9.095793e-52 | -8.615850e-47 |
| Msa0149190 | Msa0174730 | 0.838732 | 2.415111e-57 | -8.615850e-47 |
| Msa0149190 | Msa0174770 | 0.847778 | 9.322247e-60 | -8.615850e-47 |
| Msa0149190 | Msa0181610 | 0.811978 | 5.341873e-51 | -8.615850e-47 |
| Msa0149190 | Msa0187930 | 0.806060 | 9.879012e-50 | -8.615850e-47 |
| Msa0149190 | Msa0194540 | 0.804085 | 2.558044e-49 | -8.615850e-47 |
| Msa0149190 | Msa0199690 | 0.820224 | 7.678947e-53 | -8.615850e-47 |
| Msa0149190 | Msa0199880 | 0.830332 | 3.118016e-55 | -8.615850e-47 |
| Msa0149190 | Msa0211840 | 0.819633 | 1.048221e-52 | -8.615850e-47 |
| Msa0149190 | Msa0241780 | 0.825012 | 5.910073e-54 | -8.615850e-47 |
| Msa0149190 | Msa0242410 | 0.823009 | 1.744142e-53 | -8.615850e-47 |
| Msa0149190 | Msa0244780 | 0.800538 | 1.375184e-48 | -8.615850e-47 |
| Msa0149190 | Msa0267970 | 0.830651 | 2.604738e-55 | -8.615850e-47 |
| Msa0149190 | Msa0268130 | 0.803863 | 2.845578e-49 | -8.615850e-47 |
| Msa0149190 | Msa0280430 | 0.823313 | 1.481224e-53 | -8.615850e-47 |
| Msa0149190 | Msa0280610 | 0.806943 | 6.434964e-50 | -8.615850e-47 |
| Msa0149190 | Msa0304590 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0149190 | Msa0310030 | 0.822017 | 2.965717e-53 | -8.615850e-47 |
| Msa0149190 | Msa0317910 | 0.818246 | 2.166992e-52 | -8.615850e-47 |
| Msa0149190 | Msa0322890 | 0.822794 | 1.957207e-53 | -8.615850e-47 |
| Msa0149190 | Msa0348830 | 0.845858 | 3.124945e-59 | -8.615850e-47 |
| Msa0149190 | Msa0369450 | 0.819903 | 9.096176e-53 | -8.615850e-47 |
| Msa0149190 | Msa0376690 | 0.805515 | 1.286373e-49 | -8.615850e-47 |
| Msa0149190 | Msa0376820 | 0.805686 | 1.184194e-49 | -8.615850e-47 |
| Msa0149190 | Msa0378490 | 0.822328 | 2.512089e-53 | -8.615850e-47 |
| Msa0149190 | Msa0380300 | 0.804763 | 1.848117e-49 | -8.615850e-47 |
| Msa0149190 | Msa0390030 | 0.976924 | 9.135004e-143 | -8.615850e-47 |
| Msa0149190 | Msa0414800 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0149190 | Msa0415430 | 0.800081 | 1.703352e-48 | -8.615850e-47 |
| Msa0149190 | Msa0427150 | 0.840468 | 8.537630e-58 | -8.615850e-47 |
| Msa0149190 | Msa0432210 | 0.844400 | 7.738083e-59 | -8.615850e-47 |
| Msa0149190 | Msa0443390 | 0.822220 | 2.661440e-53 | -8.615850e-47 |
| Msa0149190 | Msa0470530 | 0.808430 | 3.108807e-50 | -8.615850e-47 |
| Msa0149190 | Msa0471440 | 0.837859 | 4.053922e-57 | -8.615850e-47 |
| Msa0149190 | Msa0471590 | 0.830708 | 2.522800e-55 | -8.615850e-47 |
| Msa0149190 | Msa0472130 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa0149190 | Msa0481480 | 0.842510 | 2.474668e-58 | -8.615850e-47 |
| Msa0149190 | Msa0521050 | 0.883786 | 3.339607e-71 | -8.615850e-47 |
| Msa0149190 | Msa0526540 | 0.801275 | 9.721776e-49 | -8.615850e-47 |
| Msa0149190 | Msa0552810 | 0.854694 | 1.037653e-61 | -8.615850e-47 |
| Msa0149190 | Msa0559790 | 0.813823 | 2.105517e-51 | -8.615850e-47 |
| Msa0149190 | Msa0566700 | 0.811411 | 7.097473e-51 | -8.615850e-47 |
| Msa0149190 | Msa0573350 | 0.818051 | 2.397796e-52 | -8.615850e-47 |
| Msa0149190 | Msa0580280 | 0.821650 | 3.607805e-53 | -8.615850e-47 |
| Msa0149190 | Msa0581070 | 0.856667 | 2.755128e-62 | -8.615850e-47 |
| Msa0149190 | Msa0581110 | 0.832643 | 8.407128e-56 | -8.615850e-47 |
| Msa0149190 | Msa0610390 | 0.802972 | 4.351866e-49 | -8.615850e-47 |
| Msa0149190 | Msa0615990 | 0.800908 | 1.155956e-48 | -8.615850e-47 |
| Msa0149190 | Msa0631250 | 0.801649 | 8.148903e-49 | -8.615850e-47 |
| Msa0149190 | Msa0650920 | 0.812114 | 4.988659e-51 | -8.615850e-47 |
| Msa0149190 | Msa0651050 | 0.867440 | 1.366878e-65 | -8.615850e-47 |
| Msa0149190 | Msa0661300 | 0.864451 | 1.204427e-64 | -8.615850e-47 |
| Msa0149190 | Msa0666230 | 0.814933 | 1.197002e-51 | -8.615850e-47 |
| Msa0149190 | Msa0666270 | 0.806663 | 7.372960e-50 | -8.615850e-47 |
| Msa0149190 | Msa0687630 | 0.844214 | 8.683881e-59 | -8.615850e-47 |
| Msa0149190 | Msa0692840 | 0.829386 | 5.298285e-55 | -8.615850e-47 |
| Msa0149190 | Msa0692940 | 0.849471 | 3.165895e-60 | -8.615850e-47 |
| Msa0149190 | Msa0697080 | 0.808936 | 2.424342e-50 | -8.615850e-47 |
| Msa0149190 | Msa0698780 | 0.809263 | 2.063200e-50 | -8.615850e-47 |
| Msa0149190 | Msa0784200 | 0.807378 | 5.204180e-50 | -8.615850e-47 |
| Msa0149190 | Msa0808800 | 0.800493 | 1.404361e-48 | -8.615850e-47 |
| Msa0149190 | Msa0818310 | 0.810924 | 9.049271e-51 | -8.615850e-47 |
| Msa0149190 | Msa0858770 | 0.816337 | 5.824878e-52 | -8.615850e-47 |
| Msa0149190 | Msa0968590 | 0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0149190 | Msa0994290 | 0.815657 | 8.261478e-52 | -8.615850e-47 |
| Msa0149190 | Msa1019240 | 0.837350 | 5.474896e-57 | -8.615850e-47 |
| Msa0149190 | Msa1019260 | 0.851356 | 9.359257e-61 | -8.615850e-47 |
| Msa0149190 | Msa1078270 | 0.812837 | 3.467388e-51 | -8.615850e-47 |
| Msa0149190 | Msa1104140 | 0.809738 | 1.631537e-50 | -8.615850e-47 |
| Msa0149190 | Msa1104210 | 0.831371 | 1.733543e-55 | -8.615850e-47 |
| Msa0149190 | Msa1123500 | 0.810560 | 1.084775e-50 | -8.615850e-47 |
| Msa0149190 | Msa1126510 | 0.856335 | 3.450075e-62 | -8.615850e-47 |
| Msa0149190 | Msa1126770 | 0.852217 | 5.334262e-61 | -8.615850e-47 |
| Msa0149190 | Msa1126830 | 0.834556 | 2.798721e-56 | -8.615850e-47 |
| Msa0149190 | Msa1130980 | 0.823520 | 1.325191e-53 | -8.615850e-47 |
| Msa0149190 | Msa1165780 | 0.808729 | 2.684442e-50 | -8.615850e-47 |
| Msa0149190 | Msa1165940 | 0.852458 | 4.554954e-61 | -8.615850e-47 |
| Msa0149190 | Msa1166860 | 0.855892 | 4.648273e-62 | -8.615850e-47 |
| Msa0149190 | Msa1166870 | 0.806347 | 8.597698e-50 | -8.615850e-47 |
| Msa0149190 | Msa1169770 | 0.811733 | 6.041092e-51 | -8.615850e-47 |
| Msa0149190 | Msa1184370 | 0.816096 | 6.596064e-52 | -8.615850e-47 |
| Msa0149190 | Msa1207270 | 0.808000 | 3.840343e-50 | -8.615850e-47 |
| Msa0149190 | Msa1227690 | 0.822346 | 2.488204e-53 | -8.615850e-47 |
| Msa0149190 | Msa1239910 | 0.808210 | 3.464073e-50 | -8.615850e-47 |
| Msa0149190 | Msa1251160 | 0.804567 | 2.030779e-49 | -8.615850e-47 |
| Msa0149190 | Msa1257510 | 0.825925 | 3.592584e-54 | -8.615850e-47 |
| Msa0149190 | Msa1307950 | 0.836214 | 1.066957e-56 | -8.615850e-47 |
| Msa0149190 | Msa1338190 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa0149190 | Msa1343040 | 0.810794 | 9.653643e-51 | -8.615850e-47 |
| Msa0149190 | Msa1345450 | 0.820819 | 5.607153e-53 | -8.615850e-47 |
| Msa0149190 | Msa1362420 | 0.801322 | 9.510558e-49 | -8.615850e-47 |
| Msa0149190 | Msa1362790 | 0.801222 | 9.967157e-49 | -8.615850e-47 |
| Msa0149190 | Msa1363330 | 0.801180 | 1.017027e-48 | -8.615850e-47 |
| Msa0149190 | Msa1369190 | 0.835045 | 2.108450e-56 | -8.615850e-47 |
| Msa0149190 | Msa1370860 | 0.859901 | 3.001919e-63 | -8.615850e-47 |
| Msa0149190 | Msa1379760 | 0.840156 | 1.030271e-57 | -8.615850e-47 |
| Msa0149190 | Msa1382780 | 0.830269 | 3.229212e-55 | -8.615850e-47 |
| Msa0149190 | Msa1386600 | 0.800202 | 1.609590e-48 | -8.615850e-47 |
| Msa0149190 | Msa1404190 | 0.844616 | 6.771549e-59 | -8.615850e-47 |
| Msa0149190 | Msa1407460 | 0.811487 | 6.829859e-51 | -8.615850e-47 |
| Msa0149190 | Msa1413260 | 0.857239 | 1.868584e-62 | -8.615850e-47 |
| Msa0149190 | Msa1418340 | 0.826313 | 2.904749e-54 | -8.615850e-47 |
| Msa0149190 | Msa1425670 | 0.842565 | 2.392278e-58 | -8.615850e-47 |
| Msa0149190 | Msa1442850 | 0.821559 | 3.786915e-53 | -8.615850e-47 |
| Msa0149190 | Msa1450280 | 0.852555 | 4.275350e-61 | -8.615850e-47 |
| Msa0149190 | Msa1456050 | 0.879587 | 1.103220e-69 | -8.615850e-47 |
| Msa0149190 | Msa1462860 | 0.831267 | 1.839269e-55 | -8.615850e-47 |
| Msa0149190 | Msa1465080 | 0.859239 | 4.744894e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149190 | MtrunA17_Chr1g0147821 | 83.158 | 190 | 15 | 2 | 1 | 173 | 1 | 190 | 3.10e-66 | 200 |
| Msa0149190 | MtrunA17_Chr8g0365051 | 62.234 | 188 | 42 | 7 | 1 | 163 | 1 | 184 | 1.69e-54 | 170 |
| Msa0149190 | MtrunA17_Chr3g0139061 | 67.500 | 200 | 37 | 4 | 1 | 173 | 1 | 199 | 6.24e-44 | 144 |
| Msa0149190 | MtrunA17_Chr7g0269331 | 44.000 | 75 | 40 | 1 | 4 | 76 | 9 | 83 | 3.59e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149190 | AT4G31580.2 | 60.500 | 200 | 52 | 4 | 1 | 173 | 1 | 200 | 2.77e-59 | 183 |
| Msa0149190 | AT4G31580.1 | 60.500 | 200 | 52 | 4 | 1 | 173 | 1 | 200 | 2.77e-59 | 183 |
| Msa0149190 | AT2G24590.1 | 63.265 | 196 | 49 | 5 | 1 | 173 | 1 | 196 | 1.13e-51 | 164 |
| Msa0149190 | AT1G23860.4 | 54.211 | 190 | 51 | 6 | 1 | 162 | 1 | 182 | 1.83e-36 | 125 |
| Msa0149190 | AT1G23860.1 | 52.604 | 192 | 55 | 7 | 1 | 162 | 1 | 186 | 9.92e-36 | 123 |
| Msa0149190 | AT1G23860.2 | 52.604 | 192 | 55 | 7 | 1 | 162 | 1 | 186 | 9.92e-36 | 123 |
| Msa0149190 | AT1G23860.3 | 61.111 | 108 | 25 | 2 | 1 | 95 | 1 | 104 | 1.58e-34 | 119 |
| Msa0149190 | AT1G60650.2 | 34.959 | 123 | 55 | 3 | 2 | 99 | 12 | 134 | 6.67e-12 | 62.8 |
| Msa0149190 | AT1G60650.1 | 34.959 | 123 | 55 | 3 | 2 | 99 | 12 | 134 | 6.67e-12 | 62.8 |
| Msa0149190 | AT1G02840.1 | 52.727 | 55 | 24 | 1 | 4 | 56 | 9 | 63 | 7.72e-11 | 59.7 |
Find 80 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGGGAATAGTGAGATTT+TGG | 0.237194 | 1_4:-9778118 | Msa0149190:three_prime_UTR |
| TCCATACTGTTGTGATTTGT+AGG | 0.282674 | 1_4:-9781762 | Msa0149190:five_prime_UTR |
| TGGTGTGGCGGCGGCGGTGG+TGG | 0.287260 | 1_4:-9779293 | Msa0149190:CDS |
| AGGTGACACGCTGCGGCGCC+TGG | 0.293523 | 1_4:+9778718 | None:intergenic |
| AAGTGGTGTGGCGGCGGCGG+TGG | 0.327973 | 1_4:-9779296 | Msa0149190:CDS |
| GTGGAGGTCGTGGTCGTGGC+GGG | 0.328032 | 1_4:-9779274 | Msa0149190:CDS |
| GTATATGCAGAAATGGCATT+AGG | 0.366155 | 1_4:-9778191 | Msa0149190:intron |
| TCGTGTGTACGTGGGTAATC+TGG | 0.366370 | 1_4:-9781713 | Msa0149190:CDS |
| TGCGACATTCACGAGCAAAA+TGG | 0.370957 | 1_4:+9779208 | None:intergenic |
| TTCAAAATTAACTTCTGCTT+CGG | 0.370967 | 1_4:+9778160 | None:intergenic |
| GAGGAGGTGCCATATGCTAA+TGG | 0.408138 | 1_4:-9778650 | Msa0149190:CDS |
| TTCGCAGGAGTCCAAGTTAT+GGG | 0.409234 | 1_4:-9779134 | Msa0149190:CDS |
| TCGTGGTCGTGGCGGGGCGG+CGG | 0.410083 | 1_4:-9779267 | Msa0149190:CDS |
| ATGTTGTGTTTGCAGTGTTT+GGG | 0.412023 | 1_4:-9780776 | Msa0149190:intron |
| TCTAACCTTCGCCCATAACT+TGG | 0.420005 | 1_4:+9779123 | None:intergenic |
| TGTGGCGGCGGCGGTGGTGG+AGG | 0.422374 | 1_4:-9779290 | Msa0149190:CDS |
| TATATGCAGAAATGGCATTA+GGG | 0.429730 | 1_4:-9778190 | Msa0149190:intron |
| ACCTACAAATCACAACAGTA+TGG | 0.437348 | 1_4:+9781761 | None:intergenic |
| GGTGGAGGTCGTGGTCGTGG+CGG | 0.448375 | 1_4:-9779275 | Msa0149190:CDS |
| ATCGAGGTGGACTGCGGCTA+CGG | 0.452274 | 1_4:+9779157 | None:intergenic |
| GGTGACACGCTGCGGCGCCT+GGG | 0.452893 | 1_4:+9778719 | None:intergenic |
| TGGAGGTCGTGGTCGTGGCG+GGG | 0.456228 | 1_4:-9779273 | Msa0149190:CDS |
| GGCGGCGGTGGTGGAGGTCG+TGG | 0.460146 | 1_4:-9779284 | Msa0149190:CDS |
| GTGACACGCTGCGGCGCCTG+GGG | 0.468230 | 1_4:+9778720 | None:intergenic |
| GGTGGTGGAGGTCGTGGTCG+TGG | 0.472836 | 1_4:-9779278 | Msa0149190:CDS |
| TAGAAGTGGTGTGGCGGCGG+CGG | 0.486850 | 1_4:-9779299 | Msa0149190:CDS |
| TTTCGCAGGAGTCCAAGTTA+TGG | 0.489373 | 1_4:-9779135 | Msa0149190:CDS |
| AGGTCGTGGTCGTGGCGGGG+CGG | 0.491207 | 1_4:-9779270 | Msa0149190:CDS |
| TTCTAGAAGTGGTGTGGCGG+CGG | 0.492551 | 1_4:-9779302 | Msa0149190:intron |
| AGGAGGTGCCATATGCTAAT+GGG | 0.493730 | 1_4:-9778649 | Msa0149190:intron |
| ATAACTAACCCATTAGCATA+TGG | 0.508636 | 1_4:+9778641 | None:intergenic |
| GATGCTATACGCGATCTAGA+TGG | 0.514035 | 1_4:-9780694 | Msa0149190:intron |
| TGTTATGAGTGTGGTGAACC+TGG | 0.515250 | 1_4:-9779231 | Msa0149190:CDS |
| ACCTCCTCACGCCCACGGTA+AGG | 0.515427 | 1_4:+9778665 | None:intergenic |
| AACGATGTCTCGTGTGTACG+TGG | 0.515828 | 1_4:-9781722 | Msa0149190:exon |
| ATTAACTTCTGCTTCGGCGT+CGG | 0.515869 | 1_4:+9778166 | None:intergenic |
| GTCAGTGAGAGCAATTATTG+AGG | 0.526754 | 1_4:-9778135 | Msa0149190:three_prime_UTR |
| TGTCGCAATCGTGGTGGTGG+TGG | 0.529392 | 1_4:-9779192 | Msa0149190:CDS |
| CAAGTATTAAGCAAAGATAC+AGG | 0.533148 | 1_4:+9777991 | None:intergenic |
| GCCCTAGAAATCTTAAGAGT+GGG | 0.534286 | 1_4:+9781864 | None:intergenic |
| TGATGACCGCAGAGATGCAC+AGG | 0.545051 | 1_4:-9780716 | Msa0149190:CDS |
| TCCTTACCGTGGGCGTGAGG+AGG | 0.547639 | 1_4:-9778666 | Msa0149190:CDS |
| TGGGTTGCTCGAAGACCACC+TGG | 0.550517 | 1_4:-9780757 | Msa0149190:CDS |
| TCACGCCCACGGTAAGGAGG+TGG | 0.554871 | 1_4:+9778671 | None:intergenic |
| TCAGTGAGAGCAATTATTGA+GGG | 0.555148 | 1_4:-9778134 | Msa0149190:three_prime_UTR |
| CATTCACGAGCAAAATGGCC+AGG | 0.561096 | 1_4:+9779213 | None:intergenic |
| GAATGTCGCAATCGTGGTGG+TGG | 0.564770 | 1_4:-9779195 | Msa0149190:CDS |
| GCAGTCCACCTCGATTTCGC+AGG | 0.566410 | 1_4:-9779149 | Msa0149190:CDS |
| AGTCTCAGAGAGGGACCTTG+AGG | 0.566930 | 1_4:-9781683 | Msa0149190:CDS |
| ACCTCCTTACCGTGGGCGTG+AGG | 0.571158 | 1_4:-9778669 | Msa0149190:CDS |
| AGCCCTAGAAATCTTAAGAG+TGG | 0.572057 | 1_4:+9781863 | None:intergenic |
| CTCGTGGACGTAGCTACAGC+AGG | 0.573406 | 1_4:-9778697 | Msa0149190:CDS |
| AAGTCAATAAAAGCATAGCC+AGG | 0.586577 | 1_4:+9780739 | None:intergenic |
| GGAGTCCAAGTTATGGGCGA+AGG | 0.589847 | 1_4:-9779128 | Msa0149190:intron |
| AAGCAATTACTTAAAATAGA+CGG | 0.590512 | 1_4:+9777950 | None:intergenic |
| CGCCGCAGCGTGTCACCTCG+TGG | 0.590625 | 1_4:-9778713 | Msa0149190:CDS |
| CTTGGACTCCTGCGAAATCG+AGG | 0.595739 | 1_4:+9779141 | None:intergenic |
| GATTTGAAGTGTTATGAGTG+TGG | 0.598609 | 1_4:-9779240 | Msa0149190:CDS |
| AGGTCACCACCTCCTTACCG+TGG | 0.601922 | 1_4:-9778677 | Msa0149190:CDS |
| GCTCGTGAATGTCGCAATCG+TGG | 0.611165 | 1_4:-9779201 | Msa0149190:CDS |
| CAATTCTAGAAGTGGTGTGG+CGG | 0.613497 | 1_4:-9779305 | Msa0149190:intron |
| TCACAATTCTAGAAGTGGTG+TGG | 0.619090 | 1_4:-9779308 | Msa0149190:intron |
| TCCTCACGCCCACGGTAAGG+AGG | 0.623016 | 1_4:+9778668 | None:intergenic |
| CCAGGAGTTACAGTCCTCGT+GGG | 0.630414 | 1_4:-9778748 | Msa0149190:intron |
| ACCAGGAGTTACAGTCCTCG+TGG | 0.630825 | 1_4:-9778749 | Msa0149190:intron |
| GGTCACCACCTCCTTACCGT+GGG | 0.634356 | 1_4:-9778676 | Msa0149190:CDS |
| ATGGCACCTCCTCACGCCCA+CGG | 0.635291 | 1_4:+9778660 | None:intergenic |
| AAACACGAAATTCATCCTCA+AGG | 0.640455 | 1_4:+9781668 | None:intergenic |
| GGAGTTACAGTCCTCGTGGG+CGG | 0.645283 | 1_4:-9778745 | Msa0149190:CDS |
| ACGATGTCTCGTGTGTACGT+GGG | 0.656849 | 1_4:-9781721 | Msa0149190:CDS |
| GGATTCTAGAGTCTCAGAGA+GGG | 0.661005 | 1_4:-9781692 | Msa0149190:CDS |
| GTCCACGAGGTGACACGCTG+CGG | 0.671063 | 1_4:+9778711 | None:intergenic |
| GGACTCCTGCGAAATCGAGG+TGG | 0.673792 | 1_4:+9779144 | None:intergenic |
| TGACACGCTGCGGCGCCTGG+GGG | 0.679479 | 1_4:+9778721 | None:intergenic |
| TGCGAAATCGAGGTGGACTG+CGG | 0.679589 | 1_4:+9779151 | None:intergenic |
| CTGCTGTAGCTACGTCCACG+AGG | 0.684355 | 1_4:+9778698 | None:intergenic |
| CGTGAATGTCGCAATCGTGG+TGG | 0.699969 | 1_4:-9779198 | Msa0149190:CDS |
| TGGATTCTAGAGTCTCAGAG+AGG | 0.702659 | 1_4:-9781693 | Msa0149190:CDS |
| TCAATAAAAGCATAGCCAGG+TGG | 0.704252 | 1_4:+9780742 | None:intergenic |
| TAGCATCCTGTGCATCTCTG+CGG | 0.708826 | 1_4:+9780710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGAAGAAAAAAAAAATT+TGG | - | chr1_4:9778382-9778401 | Msa0149190:intron | 10.0% |
| !! | AAAAAAAAAATTTGGAAATA+GGG | - | chr1_4:9778390-9778409 | Msa0149190:intron | 10.0% |
| !!! | ATAAAAATTATGTTTTTGTA+TGG | - | chr1_4:9778915-9778934 | Msa0149190:intron | 10.0% |
| !!! | TAAAAATTATGTTTTTGTAT+GGG | - | chr1_4:9778916-9778935 | Msa0149190:intron | 10.0% |
| !! | TTAAACTAAAAAGAGAAAAT+TGG | + | chr1_4:9778013-9778032 | None:intergenic | 15.0% |
| !! | GAAAAAAAAAATTTGGAAAT+AGG | - | chr1_4:9778389-9778408 | Msa0149190:intron | 15.0% |
| !!! | AATTATGATTAATCTTGTTT+TGG | - | chr1_4:9778991-9779010 | Msa0149190:intron | 15.0% |
| !!! | ATAATTTTTAACCTTGAAAA+AGG | + | chr1_4:9780331-9780350 | None:intergenic | 15.0% |
| !! | ATTCTTAATTATAATTGAAG+TGG | - | chr1_4:9780863-9780882 | Msa0149190:intron | 15.0% |
| !! | ACAAATAAACATTATATAGT+TGG | - | chr1_4:9781505-9781524 | Msa0149190:intron | 15.0% |
| !!! | TAACTTGATTTTTCATGTAA+AGG | - | chr1_4:9778281-9778300 | Msa0149190:intron | 20.0% |
| !! | TAAATTGAATTCTCAAAAGT+TGG | + | chr1_4:9778689-9778708 | None:intergenic | 20.0% |
| !!! | GTTGTGTTGATTATTTTTAA+TGG | - | chr1_4:9778792-9778811 | Msa0149190:intron | 20.0% |
| !! | AAACACAAATAAACTATTGT+TGG | - | chr1_4:9778858-9778877 | Msa0149190:intron | 20.0% |
| !! | TGGCACTTTAATAATATATA+TGG | + | chr1_4:9779176-9779195 | None:intergenic | 20.0% |
| !! | AATAACTTCGGAAAATATTA+TGG | - | chr1_4:9779675-9779694 | Msa0149190:intron | 20.0% |
| !! | TTAATTGAATATAAACGTGT+CGG | - | chr1_4:9779982-9780001 | Msa0149190:intron | 20.0% |
| !! | AATATATCTGCAACATTAAA+CGG | + | chr1_4:9780164-9780183 | None:intergenic | 20.0% |
| !! | AAAATACCACAATAAAACAT+TGG | + | chr1_4:9780758-9780777 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTAATGATCATGT+AGG | - | chr1_4:9780773-9780792 | Msa0149190:intron | 20.0% |
| !!! | TTTTTCTTAATGATCATGTA+GGG | - | chr1_4:9780774-9780793 | Msa0149190:intron | 20.0% |
| !!! | AAAGCATTATTACAAAAAGT+AGG | + | chr1_4:9780815-9780834 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATAATGCTTTTG+TGG | - | chr1_4:9780817-9780836 | Msa0149190:intron | 20.0% |
| !!! | ATTCTAAGGTATAAAATAGT+AGG | + | chr1_4:9780912-9780931 | None:intergenic | 20.0% |
| !! | GCTTAGTATGAAAAATTTAA+GGG | + | chr1_4:9781199-9781218 | None:intergenic | 20.0% |
| !! | TGCTTAGTATGAAAAATTTA+AGG | + | chr1_4:9781200-9781219 | None:intergenic | 20.0% |
| !! | AAAATATCACCAAGTTAAAA+TGG | - | chr1_4:9781358-9781377 | Msa0149190:intron | 20.0% |
| !! | AAATATCACCAAGTTAAAAT+GGG | - | chr1_4:9781359-9781378 | Msa0149190:intron | 20.0% |
| !! | GTAAATATGCTTATTAAGTA+CGG | + | chr1_4:9781454-9781473 | None:intergenic | 20.0% |
| !! | CTAATATACAGACATAATAA+AGG | + | chr1_4:9781476-9781495 | None:intergenic | 20.0% |
| !! | AATAAACATTATATAGTTGG+AGG | - | chr1_4:9781508-9781527 | Msa0149190:intron | 20.0% |
| !! | AAATTAACATAAATCACATG+CGG | + | chr1_4:9781534-9781553 | None:intergenic | 20.0% |
| !! | ATTTCTGCATATACATTATT+TGG | + | chr1_4:9781612-9781631 | None:intergenic | 20.0% |
| !! | AAATAATGTATATGCAGAAA+TGG | - | chr1_4:9781611-9781630 | Msa0149190:intron | 20.0% |
| !!! | AATATGAATCTGTTTTGTTT+GGG | - | chr1_4:9781732-9781751 | Msa0149190:exon | 20.0% |
| !! | AAGCAATTACTTAAAATAGA+CGG | + | chr1_4:9781862-9781881 | None:intergenic | 20.0% |
| ! | CTAAAAAGAGAAAATTGGTT+GGG | + | chr1_4:9778008-9778027 | None:intergenic | 25.0% |
| ! | ACTAAAAAGAGAAAATTGGT+TGG | + | chr1_4:9778009-9778028 | None:intergenic | 25.0% |
| ! | ATTATTCATAAAGCTTGTCA+AGG | + | chr1_4:9778582-9778601 | None:intergenic | 25.0% |
| ! | TCAAAAATAAGTCAATCCAA+AGG | - | chr1_4:9778643-9778662 | Msa0149190:intron | 25.0% |
| ! | ATTTATTGAAATCACAGACA+TGG | + | chr1_4:9778828-9778847 | None:intergenic | 25.0% |
| !!! | AATAAACTATTGTTGGTTTC+TGG | - | chr1_4:9778865-9778884 | Msa0149190:intron | 25.0% |
| !!! | CTGTGTTCATTATTTTTCAT+GGG | - | chr1_4:9778939-9778958 | Msa0149190:intron | 25.0% |
| ! | TAATGTCATAGTAATATGCA+TGG | + | chr1_4:9779196-9779215 | None:intergenic | 25.0% |
| ! | CTGCTTAATTTCTTGAAATT+TGG | - | chr1_4:9779782-9779801 | Msa0149190:intron | 25.0% |
| ! | GAACTCTTCATATTGAAATA+AGG | - | chr1_4:9779853-9779872 | Msa0149190:intron | 25.0% |
| ! | TATGTAAGTATTTATCTCAG+AGG | - | chr1_4:9780042-9780061 | Msa0149190:intron | 25.0% |
| ! | ATATATCTGCAACATTAAAC+GGG | + | chr1_4:9780163-9780182 | None:intergenic | 25.0% |
| ! | GGTATTAAACAGGTAAATAT+TGG | + | chr1_4:9780259-9780278 | None:intergenic | 25.0% |
| ! | TAGCAAAAGGATTATCATAT+TGG | + | chr1_4:9780302-9780321 | None:intergenic | 25.0% |
| ! | TAGTTATTATTGTCGCTATT+TGG | - | chr1_4:9781220-9781239 | Msa0149190:intron | 25.0% |
| !!! | TTAAAATGGGTAATTTGCTT+TGG | - | chr1_4:9781372-9781391 | Msa0149190:intron | 25.0% |
| !!! | TAAAATGGGTAATTTGCTTT+GGG | - | chr1_4:9781373-9781392 | Msa0149190:intron | 25.0% |
| ! | AGTATGTTCATAAGAAACTT+GGG | + | chr1_4:9781429-9781448 | None:intergenic | 25.0% |
| ! | AAGTATGTTCATAAGAAACT+TGG | + | chr1_4:9781430-9781449 | None:intergenic | 25.0% |
| ! | TTCAAAATTAACTTCTGCTT+CGG | + | chr1_4:9781652-9781671 | None:intergenic | 25.0% |
| !!! | GAATATGAATCTGTTTTGTT+TGG | - | chr1_4:9781731-9781750 | Msa0149190:exon | 25.0% |
| AAAAATTTGGAAATAGGGTC+TGG | - | chr1_4:9778395-9778414 | Msa0149190:intron | 30.0% | |
| AAAAATAAGCCAATCCAAAC+AGG | + | chr1_4:9778458-9778477 | None:intergenic | 30.0% | |
| !! | GTTGGCATCTTTAAGATTAA+GGG | + | chr1_4:9778671-9778690 | None:intergenic | 30.0% |
| !! | AGTTGGCATCTTTAAGATTA+AGG | + | chr1_4:9778672-9778691 | None:intergenic | 30.0% |
| !! | GCTGTGTTCATTATTTTTCA+TGG | - | chr1_4:9778938-9778957 | Msa0149190:intron | 30.0% |
| TTGGAATCTTCAATTTCTCA+TGG | - | chr1_4:9779010-9779029 | Msa0149190:intron | 30.0% | |
| GACTTAAATATGAAGAGTTG+AGG | + | chr1_4:9779284-9779303 | None:intergenic | 30.0% | |
| ACAATTAACAATGTGAACTG+AGG | - | chr1_4:9779412-9779431 | Msa0149190:intron | 30.0% | |
| ! | GATTGGTGGTTAAATAACTT+CGG | - | chr1_4:9779663-9779682 | Msa0149190:intron | 30.0% |
| ATGAATCAAACAACATCACA+AGG | + | chr1_4:9779829-9779848 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTCAAAGTATCGC+CGG | + | chr1_4:9779961-9779980 | None:intergenic | 30.0% |
| ! | AGGATTATCATATTGGTGTT+AGG | + | chr1_4:9780295-9780314 | None:intergenic | 30.0% |
| AAAAAGGAACATCTAGCAAA+AGG | + | chr1_4:9780315-9780334 | None:intergenic | 30.0% | |
| TTCTCATAAATCTAGTCACA+TGG | - | chr1_4:9780387-9780406 | Msa0149190:intron | 30.0% | |
| TCATTTGTATTCTGTGTAAC+AGG | - | chr1_4:9780451-9780470 | Msa0149190:intron | 30.0% | |
| CAAGGCTCAAATGAAAATAA+AGG | + | chr1_4:9780718-9780737 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTCATTTGAGCCT+TGG | - | chr1_4:9780716-9780735 | Msa0149190:CDS | 30.0% |
| CAGAGATAAGCATAATTCTA+AGG | + | chr1_4:9780926-9780945 | None:intergenic | 30.0% | |
| ! | TATCCATGTCATTTCTCTTA+TGG | - | chr1_4:9780955-9780974 | Msa0149190:intron | 30.0% |
| TCATTTCTCTTATGGTTGTT+AGG | - | chr1_4:9780963-9780982 | Msa0149190:intron | 30.0% | |
| ATAACTAACCCATTAGCATA+TGG | + | chr1_4:9781171-9781190 | None:intergenic | 30.0% | |
| AAATGTTCCTTGAAAAACCA+GGG | + | chr1_4:9781250-9781269 | None:intergenic | 30.0% | |
| AAAATGTTCCTTGAAAAACC+AGG | + | chr1_4:9781251-9781270 | None:intergenic | 30.0% | |
| !!! | GCAAATTACCCATTTTAACT+TGG | + | chr1_4:9781370-9781389 | None:intergenic | 30.0% |
| GTATGTTCATAAGAAACTTG+GGG | + | chr1_4:9781428-9781447 | None:intergenic | 30.0% | |
| TATATGCAGAAATGGCATTA+GGG | - | chr1_4:9781619-9781638 | Msa0149190:intron | 30.0% | |
| ! | CTTGAGTTTTACTGTTGTAT+TGG | - | chr1_4:9781761-9781780 | Msa0149190:five_prime_UTR | 30.0% |
| CAAGTATTAAGCAAAGATAC+AGG | + | chr1_4:9781821-9781840 | None:intergenic | 30.0% | |
| TTCCCACTCTTAAGATTTCT+AGG | - | chr1_4:9777943-9777962 | Msa0149190:three_prime_UTR | 35.0% | |
| TCCCACTCTTAAGATTTCTA+GGG | - | chr1_4:9777944-9777963 | Msa0149190:three_prime_UTR | 35.0% | |
| ! | TCCATACTGTTGTGATTTGT+AGG | - | chr1_4:9778047-9778066 | Msa0149190:three_prime_UTR | 35.0% |
| ACCTACAAATCACAACAGTA+TGG | + | chr1_4:9778051-9778070 | None:intergenic | 35.0% | |
| AAACACGAAATTCATCCTCA+AGG | + | chr1_4:9778144-9778163 | None:intergenic | 35.0% | |
| ! | GAGGATGAATTTCGTGTTTT+TGG | - | chr1_4:9778145-9778164 | Msa0149190:three_prime_UTR | 35.0% |
| !!! | GTGTTTTTGGTGTAATTCGA+AGG | - | chr1_4:9778158-9778177 | Msa0149190:exon | 35.0% |
| AAAACATCCACACCATCAAA+AGG | + | chr1_4:9778423-9778442 | None:intergenic | 35.0% | |
| ! | TTTGTTTCTTAGTGCCTGTT+TGG | - | chr1_4:9778441-9778460 | Msa0149190:intron | 35.0% |
| !! | TCTGAGAGTTTTATGAGAAG+CGG | - | chr1_4:9778731-9778750 | Msa0149190:CDS | 35.0% |
| ATGTTGTGTTTGCAGTGTTT+GGG | - | chr1_4:9779033-9779052 | Msa0149190:intron | 35.0% | |
| ! | AAGTCAATAAAAGCATAGCC+AGG | + | chr1_4:9779073-9779092 | None:intergenic | 35.0% |
| !!! | TTGTTTTTTCACCCCTTTTC+CGG | - | chr1_4:9779238-9779257 | Msa0149190:CDS | 35.0% |
| TGTCTCTACATGAAGTCAAA+GGG | + | chr1_4:9779395-9779414 | None:intergenic | 35.0% | |
| TTGTCTCTACATGAAGTCAA+AGG | + | chr1_4:9779396-9779415 | None:intergenic | 35.0% | |
| ! | TGCTCTGATAAGTTTTCGAT+TGG | - | chr1_4:9779646-9779665 | Msa0149190:intron | 35.0% |
| ! | TCTGATAAGTTTTCGATTGG+TGG | - | chr1_4:9779649-9779668 | Msa0149190:intron | 35.0% |
| AACATCACAAGGCTATATCA+AGG | + | chr1_4:9779818-9779837 | None:intergenic | 35.0% | |
| !! | TACTTACATACTCTGAAGCA+CGG | + | chr1_4:9780032-9780051 | None:intergenic | 35.0% |
| AAACGGGTAACAAAAAAGCT+TGG | + | chr1_4:9780147-9780166 | None:intergenic | 35.0% | |
| ACATACTGTCTTCAAACTGA+AGG | + | chr1_4:9780210-9780229 | None:intergenic | 35.0% | |
| TTTGAAGACAGTATGTTTGC+AGG | - | chr1_4:9780214-9780233 | Msa0149190:intron | 35.0% | |
| TTGAAGACAGTATGTTTGCA+GGG | - | chr1_4:9780215-9780234 | Msa0149190:intron | 35.0% | |
| !! | TGCTAGATGTTCCTTTTTCA+AGG | - | chr1_4:9780317-9780336 | Msa0149190:intron | 35.0% |
| GAAAACGTCAGTATCAAACA+CGG | - | chr1_4:9780352-9780371 | Msa0149190:intron | 35.0% | |
| ! | CTTTCTCACAATTCTAGAAG+TGG | - | chr1_4:9780496-9780515 | Msa0149190:intron | 35.0% |
| ! | GATTTGAAGTGTTATGAGTG+TGG | - | chr1_4:9780569-9780588 | Msa0149190:intron | 35.0% |
| !! | TTGGCACCAATGTTTTATTG+TGG | - | chr1_4:9780749-9780768 | Msa0149190:CDS | 35.0% |
| CAACCATAAGAGAAATGACA+TGG | + | chr1_4:9780961-9780980 | None:intergenic | 35.0% | |
| TTCTCTTATGGTTGTTAGGT+TGG | - | chr1_4:9780967-9780986 | Msa0149190:intron | 35.0% | |
| GTATATGCAGAAATGGCATT+AGG | - | chr1_4:9781618-9781637 | Msa0149190:intron | 35.0% | |
| TCAGTGAGAGCAATTATTGA+GGG | - | chr1_4:9781675-9781694 | Msa0149190:CDS | 35.0% | |
| ! | TTGAGGGAATAGTGAGATTT+TGG | - | chr1_4:9781691-9781710 | Msa0149190:CDS | 35.0% |
| !! | GTGAGATTTTGGTCATTTAG+TGG | - | chr1_4:9781702-9781721 | Msa0149190:CDS | 35.0% |
| GCCCTAGAAATCTTAAGAGT+GGG | + | chr1_4:9777948-9777967 | None:intergenic | 40.0% | |
| AGCCCTAGAAATCTTAAGAG+TGG | + | chr1_4:9777949-9777968 | None:intergenic | 40.0% | |
| TTCTTAGTGCCTGTTTGGAT+TGG | - | chr1_4:9778446-9778465 | Msa0149190:intron | 40.0% | |
| !! | TTTAAGATTAAGGGCGCCTT+TGG | + | chr1_4:9778662-9778681 | None:intergenic | 40.0% |
| !! | CTGAGAGTTTTATGAGAAGC+GGG | - | chr1_4:9778732-9778751 | Msa0149190:CDS | 40.0% |
| GATGTTGTGTTTGCAGTGTT+TGG | - | chr1_4:9779032-9779051 | Msa0149190:intron | 40.0% | |
| ! | TCAATAAAAGCATAGCCAGG+TGG | + | chr1_4:9779070-9779089 | None:intergenic | 40.0% |
| TGAACATATCGACCGGAAAA+GGG | + | chr1_4:9779253-9779272 | None:intergenic | 40.0% | |
| ! | TTTTCCGGTCGATATGTTCA+CGG | - | chr1_4:9779253-9779272 | Msa0149190:CDS | 40.0% |
| GCTACACTTCTCTTGCATAA+CGG | - | chr1_4:9779465-9779484 | Msa0149190:intron | 40.0% | |
| GCTACACTTCTCTTGCATAA+CGG | - | chr1_4:9779465-9779484 | Msa0149190:intron | 40.0% | |
| TGCTACTGCAATTAACCTGT+CGG | - | chr1_4:9779573-9779592 | Msa0149190:intron | 40.0% | |
| GGGACATATATACAGAACAC+AGG | + | chr1_4:9779613-9779632 | None:intergenic | 40.0% | |
| TGATATGGATATGTCGACAC+CGG | - | chr1_4:9779939-9779958 | Msa0149190:intron | 40.0% | |
| ! | GAATATAAACGTGTCGGTGT+CGG | - | chr1_4:9779988-9780007 | Msa0149190:intron | 40.0% |
| ! | AATATAAACGTGTCGGTGTC+GGG | - | chr1_4:9779989-9780008 | Msa0149190:intron | 40.0% |
| TGTCTTCAAACTGAAGGTCT+CGG | + | chr1_4:9780204-9780223 | None:intergenic | 40.0% | |
| ACAGTATGTTTGCAGGGTTA+TGG | - | chr1_4:9780221-9780240 | Msa0149190:intron | 40.0% | |
| GACACAGCTAGGTATTAAAC+AGG | + | chr1_4:9780269-9780288 | None:intergenic | 40.0% | |
| TTCTGTGTAACAGGCAAGAA+TGG | - | chr1_4:9780460-9780479 | Msa0149190:intron | 40.0% | |
| ! | TCACAATTCTAGAAGTGGTG+TGG | - | chr1_4:9780501-9780520 | Msa0149190:intron | 40.0% |
| ! | GTCTTTCTTTTGTATGCACC+AGG | - | chr1_4:9781043-9781062 | Msa0149190:intron | 40.0% |
| ! | TATCTTCTGCCGCTATCTTT+TGG | - | chr1_4:9781396-9781415 | Msa0149190:intron | 40.0% |
| TCATAAGAAACTTGGGGTCT+TGG | + | chr1_4:9781422-9781441 | None:intergenic | 40.0% | |
| GTCAGTGAGAGCAATTATTG+AGG | - | chr1_4:9781674-9781693 | Msa0149190:CDS | 40.0% | |
| !! | TGGATTCTAGAGTCTCAGAG+AGG | - | chr1_4:9778116-9778135 | Msa0149190:three_prime_UTR | 45.0% |
| !! | GGATTCTAGAGTCTCAGAGA+GGG | - | chr1_4:9778117-9778136 | Msa0149190:three_prime_UTR | 45.0% |
| GATGCTATACGCGATCTAGA+TGG | - | chr1_4:9779115-9779134 | Msa0149190:intron | 45.0% | |
| GAACATATCGACCGGAAAAG+GGG | + | chr1_4:9779252-9779271 | None:intergenic | 45.0% | |
| GTGAACATATCGACCGGAAA+AGG | + | chr1_4:9779254-9779273 | None:intergenic | 45.0% | |
| AAAGCCGTGAACATATCGAC+CGG | + | chr1_4:9779260-9779279 | None:intergenic | 45.0% | |
| ACTGAGGATTTGCACTGCTT+TGG | - | chr1_4:9779428-9779447 | Msa0149190:intron | 45.0% | |
| CTGAGGATTTGCACTGCTTT+GGG | - | chr1_4:9779429-9779448 | Msa0149190:intron | 45.0% | |
| ! | CAGAGCACAATTTGCTCAGA+GGG | + | chr1_4:9779633-9779652 | None:intergenic | 45.0% |
| ! | TCAGAGCACAATTTGCTCAG+AGG | + | chr1_4:9779634-9779653 | None:intergenic | 45.0% |
| CACTGGACACAACACTGATA+TGG | - | chr1_4:9779924-9779943 | Msa0149190:intron | 45.0% | |
| GTGTTAGGTTTGACACAGCT+AGG | + | chr1_4:9780280-9780299 | None:intergenic | 45.0% | |
| GTGTAACAGGCAAGAATGGT+TGG | - | chr1_4:9780464-9780483 | Msa0149190:intron | 45.0% | |
| TAACAGGCAAGAATGGTTGG+AGG | - | chr1_4:9780467-9780486 | Msa0149190:intron | 45.0% | |
| AACAGGCAAGAATGGTTGGA+GGG | - | chr1_4:9780468-9780487 | Msa0149190:intron | 45.0% | |
| ! | CAATTCTAGAAGTGGTGTGG+CGG | - | chr1_4:9780504-9780523 | Msa0149190:intron | 45.0% |
| TGTTATGAGTGTGGTGAACC+TGG | - | chr1_4:9780578-9780597 | Msa0149190:intron | 45.0% | |
| TGCGACATTCACGAGCAAAA+TGG | + | chr1_4:9780604-9780623 | None:intergenic | 45.0% | |
| TTTCGCAGGAGTCCAAGTTA+TGG | - | chr1_4:9780674-9780693 | Msa0149190:intron | 45.0% | |
| TTCGCAGGAGTCCAAGTTAT+GGG | - | chr1_4:9780675-9780694 | Msa0149190:intron | 45.0% | |
| TCTAACCTTCGCCCATAACT+TGG | + | chr1_4:9780689-9780708 | None:intergenic | 45.0% | |
| GTTATGGGCGAAGGTTAGAT+TGG | - | chr1_4:9780690-9780709 | Msa0149190:intron | 45.0% | |
| ! | GAGCCTTGGTGCAATTGTAT+TGG | - | chr1_4:9780730-9780749 | Msa0149190:CDS | 45.0% |
| GTGCCAATACAATTGCACCA+AGG | + | chr1_4:9780736-9780755 | None:intergenic | 45.0% | |
| !! | AGGAGGTGCCATATGCTAAT+GGG | - | chr1_4:9781160-9781179 | Msa0149190:intron | 45.0% |
| ATTAACTTCTGCTTCGGCGT+CGG | + | chr1_4:9781646-9781665 | None:intergenic | 45.0% | |
| AACGATGTCTCGTGTGTACG+TGG | - | chr1_4:9778087-9778106 | Msa0149190:three_prime_UTR | 50.0% | |
| ACGATGTCTCGTGTGTACGT+GGG | - | chr1_4:9778088-9778107 | Msa0149190:three_prime_UTR | 50.0% | |
| TCGTGTGTACGTGGGTAATC+TGG | - | chr1_4:9778096-9778115 | Msa0149190:three_prime_UTR | 50.0% | |
| ! | TAGGGTCTGGTGCCTTTTGA+TGG | - | chr1_4:9778408-9778427 | Msa0149190:intron | 50.0% |
| !!! | TCTGGTGCCTTTTGATGGTG+TGG | - | chr1_4:9778413-9778432 | Msa0149190:intron | 50.0% |
| !! | ATGAGAAGCGGGTTAGTGAG+TGG | - | chr1_4:9778743-9778762 | Msa0149190:CDS | 50.0% |
| !! | TGAGAAGCGGGTTAGTGAGT+GGG | - | chr1_4:9778744-9778763 | Msa0149190:CDS | 50.0% |
| TAGCATCCTGTGCATCTCTG+CGG | + | chr1_4:9779102-9779121 | None:intergenic | 50.0% | |
| TGCTACTGCAATTAACCCGC+CGG | - | chr1_4:9779507-9779526 | Msa0149190:intron | 50.0% | |
| ! | ATGCAAGAGAAGTGTAGCGC+CGG | + | chr1_4:9779529-9779548 | None:intergenic | 50.0% |
| GTGTAAGCTGTTCGCAGACA+TGG | - | chr1_4:9779900-9779919 | Msa0149190:intron | 50.0% | |
| CATTCACGAGCAAAATGGCC+AGG | + | chr1_4:9780599-9780618 | None:intergenic | 50.0% | |
| !! | GAGGAGGTGCCATATGCTAA+TGG | - | chr1_4:9781159-9781178 | Msa0149190:intron | 50.0% |
| !! | TGGACAGCCCTGGTTTTTCA+AGG | - | chr1_4:9781240-9781259 | Msa0149190:intron | 50.0% |
| GGGTCTTGGCCAAAAGATAG+CGG | + | chr1_4:9781408-9781427 | None:intergenic | 50.0% | |
| AGTCTCAGAGAGGGACCTTG+AGG | - | chr1_4:9778126-9778145 | Msa0149190:three_prime_UTR | 55.0% | |
| TGATGACCGCAGAGATGCAC+AGG | - | chr1_4:9779093-9779112 | Msa0149190:intron | 55.0% | |
| TGCAAGCAGCTCTGCAGTAG+TGG | - | chr1_4:9779331-9779350 | Msa0149190:intron | 55.0% | |
| GAACACAGGCAGCACTCACA+TGG | + | chr1_4:9779599-9779618 | None:intergenic | 55.0% | |
| CTGTTCGCAGACATGGACAC+TGG | - | chr1_4:9779907-9779926 | Msa0149190:intron | 55.0% | |
| ! | GCACGGACACCTCTAGGAAT+AGG | + | chr1_4:9780015-9780034 | None:intergenic | 55.0% |
| ! | TCTGAAGCACGGACACCTCT+AGG | + | chr1_4:9780021-9780040 | None:intergenic | 55.0% |
| ! | TTCTAGAAGTGGTGTGGCGG+CGG | - | chr1_4:9780507-9780526 | Msa0149190:intron | 55.0% |
| GCTCGTGAATGTCGCAATCG+TGG | - | chr1_4:9780608-9780627 | Msa0149190:intron | 55.0% | |
| CGTGAATGTCGCAATCGTGG+TGG | - | chr1_4:9780611-9780630 | Msa0149190:intron | 55.0% | |
| GAATGTCGCAATCGTGGTGG+TGG | - | chr1_4:9780614-9780633 | Msa0149190:intron | 55.0% | |
| !! | TGCGAAATCGAGGTGGACTG+CGG | + | chr1_4:9780661-9780680 | None:intergenic | 55.0% |
| CTTGGACTCCTGCGAAATCG+AGG | + | chr1_4:9780671-9780690 | None:intergenic | 55.0% | |
| GGAGTCCAAGTTATGGGCGA+AGG | - | chr1_4:9780681-9780700 | Msa0149190:intron | 55.0% | |
| ACCAGGAGTTACAGTCCTCG+TGG | - | chr1_4:9781060-9781079 | Msa0149190:intron | 55.0% | |
| CCAGGAGTTACAGTCCTCGT+GGG | - | chr1_4:9781061-9781080 | Msa0149190:intron | 55.0% | |
| TGTCGCTATTTGGACAGCCC+TGG | - | chr1_4:9781230-9781249 | Msa0149190:intron | 55.0% | |
| TGGGTTGCTCGAAGACCACC+TGG | - | chr1_4:9779052-9779071 | Msa0149190:intron | 60.0% | |
| !! | AAGAGAAGTGTAGCGCCGGC+GGG | + | chr1_4:9779525-9779544 | None:intergenic | 60.0% |
| ! | CAAGAGAAGTGTAGCGCCGG+CGG | + | chr1_4:9779526-9779545 | None:intergenic | 60.0% |
| ! | GGTGTCGGGCCTATTCCTAG+AGG | - | chr1_4:9780003-9780022 | Msa0149190:intron | 60.0% |
| !! | TGTCGCAATCGTGGTGGTGG+TGG | - | chr1_4:9780617-9780636 | Msa0149190:intron | 60.0% |
| !! | AATCGTGGTGGTGGTGGTGC+AGG | - | chr1_4:9780623-9780642 | Msa0149190:intron | 60.0% |
| !! | ATCGAGGTGGACTGCGGCTA+CGG | + | chr1_4:9780655-9780674 | None:intergenic | 60.0% |
| GCAGTCCACCTCGATTTCGC+AGG | - | chr1_4:9780660-9780679 | Msa0149190:intron | 60.0% | |
| GGACTCCTGCGAAATCGAGG+TGG | + | chr1_4:9780668-9780687 | None:intergenic | 60.0% | |
| CCCACGAGGACTGTAACTCC+TGG | + | chr1_4:9781064-9781083 | None:intergenic | 60.0% | |
| GGAGTTACAGTCCTCGTGGG+CGG | - | chr1_4:9781064-9781083 | Msa0149190:intron | 60.0% | |
| CTGCTGTAGCTACGTCCACG+AGG | + | chr1_4:9781114-9781133 | None:intergenic | 60.0% | |
| CTCGTGGACGTAGCTACAGC+AGG | - | chr1_4:9781112-9781131 | Msa0149190:intron | 60.0% | |
| AGGTCACCACCTCCTTACCG+TGG | - | chr1_4:9781132-9781151 | Msa0149190:intron | 60.0% | |
| GGTCACCACCTCCTTACCGT+GGG | - | chr1_4:9781133-9781152 | Msa0149190:intron | 60.0% | |
| GCAGCACTCACATGGCCGAC+AGG | + | chr1_4:9779591-9779610 | None:intergenic | 65.0% | |
| TAGAAGTGGTGTGGCGGCGG+CGG | - | chr1_4:9780510-9780529 | Msa0149190:intron | 65.0% | |
| GTCCACGAGGTGACACGCTG+CGG | + | chr1_4:9781101-9781120 | None:intergenic | 65.0% | |
| TCACGCCCACGGTAAGGAGG+TGG | + | chr1_4:9781141-9781160 | None:intergenic | 65.0% | |
| ACCTCCTTACCGTGGGCGTG+AGG | - | chr1_4:9781140-9781159 | Msa0149190:intron | 65.0% | |
| TCCTCACGCCCACGGTAAGG+AGG | + | chr1_4:9781144-9781163 | None:intergenic | 65.0% | |
| TCCTTACCGTGGGCGTGAGG+AGG | - | chr1_4:9781143-9781162 | Msa0149190:intron | 65.0% | |
| ACCTCCTCACGCCCACGGTA+AGG | + | chr1_4:9781147-9781166 | None:intergenic | 65.0% | |
| ATGGCACCTCCTCACGCCCA+CGG | + | chr1_4:9781152-9781171 | None:intergenic | 65.0% | |
| !! | GGTGGTGGAGGTCGTGGTCG+TGG | - | chr1_4:9780531-9780550 | Msa0149190:intron | 70.0% |
| GGTGGAGGTCGTGGTCGTGG+CGG | - | chr1_4:9780534-9780553 | Msa0149190:intron | 70.0% | |
| GTGGAGGTCGTGGTCGTGGC+GGG | - | chr1_4:9780535-9780554 | Msa0149190:intron | 70.0% | |
| TGGAGGTCGTGGTCGTGGCG+GGG | - | chr1_4:9780536-9780555 | Msa0149190:intron | 70.0% | |
| AAGTGGTGTGGCGGCGGCGG+TGG | - | chr1_4:9780513-9780532 | Msa0149190:intron | 75.0% | |
| ! | AGGTCGTGGTCGTGGCGGGG+CGG | - | chr1_4:9780539-9780558 | Msa0149190:intron | 75.0% |
| TGACACGCTGCGGCGCCTGG+GGG | + | chr1_4:9781091-9781110 | None:intergenic | 75.0% | |
| GTGACACGCTGCGGCGCCTG+GGG | + | chr1_4:9781092-9781111 | None:intergenic | 75.0% | |
| GGTGACACGCTGCGGCGCCT+GGG | + | chr1_4:9781093-9781112 | None:intergenic | 75.0% | |
| AGGTGACACGCTGCGGCGCC+TGG | + | chr1_4:9781094-9781113 | None:intergenic | 75.0% | |
| CGCCGCAGCGTGTCACCTCG+TGG | - | chr1_4:9781096-9781115 | Msa0149190:intron | 75.0% | |
| ! | TGGTGTGGCGGCGGCGGTGG+TGG | - | chr1_4:9780516-9780535 | Msa0149190:intron | 80.0% |
| !! | TGTGGCGGCGGCGGTGGTGG+AGG | - | chr1_4:9780519-9780538 | Msa0149190:intron | 80.0% |
| !!! | GGCGGCGGTGGTGGAGGTCG+TGG | - | chr1_4:9780525-9780544 | Msa0149190:intron | 80.0% |
| !! | TCGTGGTCGTGGCGGGGCGG+CGG | - | chr1_4:9780542-9780561 | Msa0149190:intron | 80.0% |
| ! | GTCCTCGTGGGCGGTCCCCC+AGG | - | chr1_4:9781073-9781092 | Msa0149190:intron | 80.0% |
| ! | CGCCTGGGGGACCGCCCACG+AGG | + | chr1_4:9781078-9781097 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 9777942 | 9781889 | 9777942 | ID=Msa0149190;Name=Msa0149190 |
| chr1_4 | mRNA | 9777942 | 9781889 | 9777942 | ID=Msa0149190-mRNA-1;Parent=Msa0149190;Name=Msa0149190-mRNA-1;_AED=0.30;_eAED=0.30;_QI=149|0.75|0.8|1|0.75|0.8|5|225|173 |
| chr1_4 | exon | 9777942 | 9778203 | 9777942 | ID=Msa0149190-mRNA-1:exon:4142;Parent=Msa0149190-mRNA-1 |
| chr1_4 | exon | 9778650 | 9778766 | 9778650 | ID=Msa0149190-mRNA-1:exon:4141;Parent=Msa0149190-mRNA-1 |
| chr1_4 | exon | 9779129 | 9779318 | 9779129 | ID=Msa0149190-mRNA-1:exon:4140;Parent=Msa0149190-mRNA-1 |
| chr1_4 | exon | 9780695 | 9780783 | 9780695 | ID=Msa0149190-mRNA-1:exon:4139;Parent=Msa0149190-mRNA-1 |
| chr1_4 | exon | 9781652 | 9781889 | 9781652 | ID=Msa0149190-mRNA-1:exon:4138;Parent=Msa0149190-mRNA-1 |
| chr1_4 | five_prime_UTR | 9781741 | 9781889 | 9781741 | ID=Msa0149190-mRNA-1:five_prime_utr;Parent=Msa0149190-mRNA-1 |
| chr1_4 | CDS | 9781652 | 9781740 | 9781652 | ID=Msa0149190-mRNA-1:cds;Parent=Msa0149190-mRNA-1 |
| chr1_4 | CDS | 9780695 | 9780783 | 9780695 | ID=Msa0149190-mRNA-1:cds;Parent=Msa0149190-mRNA-1 |
| chr1_4 | CDS | 9779129 | 9779318 | 9779129 | ID=Msa0149190-mRNA-1:cds;Parent=Msa0149190-mRNA-1 |
| chr1_4 | CDS | 9778650 | 9778766 | 9778650 | ID=Msa0149190-mRNA-1:cds;Parent=Msa0149190-mRNA-1 |
| chr1_4 | CDS | 9778167 | 9778203 | 9778167 | ID=Msa0149190-mRNA-1:cds;Parent=Msa0149190-mRNA-1 |
| chr1_4 | three_prime_UTR | 9777942 | 9778166 | 9777942 | ID=Msa0149190-mRNA-1:three_prime_utr;Parent=Msa0149190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
