AlfalfaGEDB | Msa1037510

M. sativa cultivar zhongmu-4 / Msa1037510

KEGG: K13161
GO: GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037510	XP_003626597.1	99.165	479	4	0	1	479	1	479	0.0	973

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037510	sp\|Q9ASP6\|HNRPQ_ARATH	68.434	415	115	7	75	479	87	495	0.0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037510	G7L537	99.165	479	4	0	1	479	1	479	0.0	973

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa1037510	0.821990	3.009880e-53	-8.615850e-47
Msa0001450	Msa1037510	0.805288	1.435110e-49	-8.615850e-47
Msa0002560	Msa1037510	0.824213	9.119228e-54	-8.615850e-47
Msa0003220	Msa1037510	0.830739	2.478385e-55	-8.615850e-47
Msa0003270	Msa1037510	0.823879	1.092157e-53	-8.615850e-47
Msa0012940	Msa1037510	0.813605	2.351531e-51	-8.615850e-47
Msa0014830	Msa1037510	0.828119	1.072970e-54	-8.615850e-47
Msa0020390	Msa1037510	0.800422	1.452290e-48	-8.615850e-47
Msa0024400	Msa1037510	0.807343	5.293579e-50	-8.615850e-47
Msa0029630	Msa1037510	0.887942	9.152943e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037510	MtrunA17_Chr7g0276201	99.165	479	4	0	1	479	1	479	0.0	973
Msa1037510	MtrunA17_Chr4g0026301	53.611	360	160	4	85	443	91	444	2.70e-140	412
Msa1037510	MtrunA17_Chr7g0266451	50.248	404	182	7	86	479	83	477	1.10e-131	389
Msa1037510	MtrunA17_Chr7g0217261	50.970	361	170	4	84	443	329	683	8.44e-125	379
Msa1037510	MtrunA17_Chr8g0372111	32.653	245	160	4	105	345	419	662	9.18e-38	147
Msa1037510	MtrunA17_Chr8g0335981	28.571	266	173	7	76	337	198	450	3.36e-32	130
Msa1037510	MtrunA17_Chr7g0250221	24.468	282	185	10	72	337	162	431	1.35e-18	89.0
Msa1037510	MtrunA17_Chr4g0068631	32.237	152	83	3	104	240	88	234	6.78e-17	83.6
Msa1037510	MtrunA17_Chr1g0153181	26.434	401	217	17	93	458	109	466	3.80e-16	81.3
Msa1037510	MtrunA17_Chr1g0153181	23.048	269	188	5	104	361	32	292	4.51e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037510	AT4G00830.2	68.434	415	115	7	75	479	87	495	0.0	578
Msa1037510	AT4G00830.1	68.434	415	115	7	75	479	87	495	0.0	578
Msa1037510	AT4G00830.6	68.434	415	115	7	75	479	87	495	0.0	578
Msa1037510	AT4G00830.3	66.988	415	113	8	75	479	87	487	0.0	559
Msa1037510	AT4G00830.5	66.988	415	113	8	75	479	87	487	0.0	559
Msa1037510	AT4G00830.4	66.827	416	120	9	75	479	87	495	0.0	557
Msa1037510	AT3G52660.3	44.045	445	216	8	3	442	13	429	3.15e-118	355
Msa1037510	AT3G52660.1	44.045	445	216	8	3	442	13	429	3.15e-118	355
Msa1037510	AT3G52660.2	44.045	445	216	8	3	442	13	429	3.15e-118	355
Msa1037510	AT5G28390.1	38.889	198	62	6	247	442	1	141	7.23e-33	123

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Find 185 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGCAGAAATCGT+GGG	0.650895	7_1:-74188084	Msa1037510:CDS
AAAATGTGAAGAAAATGTTA+AGG	0.492398	7_1:-74184319	Msa1037510:three_prime_UTR
AAATCTTTATGGCTCTGTAG+GGG	0.616942	7_1:-74184927	Msa1037510:CDS
AAATGATCGGTGAAGATGCA+AGG	0.567751	7_1:-74190162	None:intergenic
AACAAAGGAGGTGGCACAGA+AGG	0.503949	7_1:-74188492	Msa1037510:CDS
AACAGCCAATGATATATGGT+AGG	0.606566	7_1:-74184763	Msa1037510:intron
AACTTCTCTGGAAATCTTTA+TGG	0.146801	7_1:-74184938	Msa1037510:CDS
AAGACTTCAGACCCATGAGG+AGG	0.707032	7_1:+74188755	None:intergenic
AAGCAAGGGTTATGCTTTCG+TGG	0.504463	7_1:-74188522	Msa1037510:CDS
AAGGAGCTATTTCGTCGTCA+TGG	0.495504	7_1:-74185464	Msa1037510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCAATTCACAAAAACAC+TGG	-	chr7_1:74184231-74184250	Msa1037510:three_prime_UTR	30.0%
CCGAAGAAATGAGATAAAAA+AGG	+	chr7_1:74184388-74184407	None:intergenic	30.0%
GAAAGGTTCATTTAAACAAC+GGG	+	chr7_1:74184624-74184643	None:intergenic	30.0%
GGAAAATTATATGGAAGAGA+TGG	-	chr7_1:74185175-74185194	Msa1037510:intron	30.0%
GTTGGGATTATTAACAAGTT+TGG	-	chr7_1:74185588-74185607	Msa1037510:intron	30.0%
CATTGATCTCATAAAGGTTT+GGG	-	chr7_1:74185989-74186008	Msa1037510:intron	30.0%
AAAATCAAAGCAGAAATCGT+GGG	-	chr7_1:74186099-74186118	Msa1037510:intron	30.0%
TCAAACATTTGATGCAATGT+AGG	+	chr7_1:74186338-74186357	None:intergenic	30.0%
GAAAAAAGAAGAAAAAGAGC+AGG	+	chr7_1:74186395-74186414	None:intergenic	30.0%
TTGCAAATACCAATCAGTTT+AGG	+	chr7_1:74186434-74186453	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74184032	74190173	74184032	ID=Msa1037510;Name=Msa1037510
chr7_1	mRNA	74184032	74190173	74184032	ID=Msa1037510-mRNA-1;Parent=Msa1037510;Name=Msa1037510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=257\|1\|1\|1\|1\|1\|9\|447\|479
chr7_1	exon	74184032	74184608	74184032	ID=Msa1037510-mRNA-1:exon:18631;Parent=Msa1037510-mRNA-1
chr7_1	exon	74184695	74184780	74184695	ID=Msa1037510-mRNA-1:exon:18630;Parent=Msa1037510-mRNA-1
chr7_1	exon	74184889	74185073	74184889	ID=Msa1037510-mRNA-1:exon:18629;Parent=Msa1037510-mRNA-1
chr7_1	exon	74185336	74185540	74185336	ID=Msa1037510-mRNA-1:exon:18628;Parent=Msa1037510-mRNA-1
chr7_1	exon	74187934	74188113	74187934	ID=Msa1037510-mRNA-1:exon:18627;Parent=Msa1037510-mRNA-1
chr7_1	exon	74188201	74188341	74188201	ID=Msa1037510-mRNA-1:exon:18626;Parent=Msa1037510-mRNA-1
chr7_1	exon	74188460	74188576	74188460	ID=Msa1037510-mRNA-1:exon:18625;Parent=Msa1037510-mRNA-1
chr7_1	exon	74188679	74189110	74188679	ID=Msa1037510-mRNA-1:exon:18624;Parent=Msa1037510-mRNA-1
chr7_1	exon	74189953	74190173	74189953	ID=Msa1037510-mRNA-1:exon:18623;Parent=Msa1037510-mRNA-1
chr7_1	five_prime_UTR	74189953	74190173	74189953	ID=Msa1037510-mRNA-1:five_prime_utr;Parent=Msa1037510-mRNA-1
chr7_1	five_prime_UTR	74189075	74189110	74189075	ID=Msa1037510-mRNA-1:five_prime_utr;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74188679	74189074	74188679	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74188460	74188576	74188460	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74188201	74188341	74188201	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74187934	74188113	74187934	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74185336	74185540	74185336	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74184889	74185073	74184889	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74184695	74184780	74184695	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	CDS	74184479	74184608	74184479	ID=Msa1037510-mRNA-1:cds;Parent=Msa1037510-mRNA-1
chr7_1	three_prime_UTR	74184032	74184478	74184032	ID=Msa1037510-mRNA-1:three_prime_utr;Parent=Msa1037510-mRNA-1

Gene Sequence

>Msa1037510

ATGTCAGAAGGTGCAGAGATCGATGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGCGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACACGAATATGAGGAGACAGCAGCAGAGGCTGGTCAAAAAGACCAATTTCCCGAAGGAGAAAAAAGTGACCATGGCGCTGAAGAAGATGAGCATAAACCAGCTCTCATTGATGAAGAGGAGAGAGAGAAGCATGATGAACTTCTTTCCCGTCCTCCTCATGGGTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATGTGACGACGATGTCAGGGAATTGTGTGAGCCCATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAGACTGGAGAAAGCAAGGGTTATGCTTTCGTGGGTTATAAAACAAAGGAGGTGGCACAGAAGGCCATTGATGATATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTTGCTGTCTGAAACCAAACACAGGTTATTCATTGGTAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGAGTTGAAAGCATTGATCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAACGCATGTGCTGATTATTCACGACAAAAGATGTCAAGTGTGGGTTTCAAGCTAGATGGTATCACACCGACTGTCACATGGGCTGACCCAAAGACCTCACCTGACCAGTCTGCTGCTGCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTTCAGGGAAACGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACGGAGAAATATGAAATTGACGGCCAAGCTCTTGAAGTTGTTATTGCGAAGCCTCAGGCTGAAAAAAAACCTGATGGAGGTTATGCGTACAATCCTGGACTCCATCCTAACCATCTTCCACATCCTGGTTATGGTAACTTCTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGCTGCTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGGTCCCCGACCCCGTAGAAATGACCGGGGAAATGGTCCAGGCGGGCGTGGAGGAGGTGGTGGTAATGATGATGGAAATCGTAATAGAAGATATCGACCCTATTAG

Protein sequence

>Msa1037510

MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQFPEGEKSDHGAEEDEHKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTCDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGGGNDDGNRNRRYRPY*