AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721230 MtrunA17_Chr5g0397881 95.342 365 11 2 1 365 1 359 0.0 709
Msa0721230 MtrunA17_Chr6g0472421 45.745 376 119 14 5 353 7 324 2.25e-81 252
Msa0721230 MtrunA17_Chr1g0203601 45.773 343 117 11 6 347 5 279 2.72e-74 232
Msa0721230 MtrunA17_Chr3g0134031 46.087 230 113 4 1 219 1 230 4.67e-60 197
Msa0721230 MtrunA17_Chr5g0402291 45.490 255 112 7 17 260 2 240 1.23e-59 194
Msa0721230 MtrunA17_Chr5g0441531 44.248 226 101 4 14 239 15 215 5.99e-58 189
Msa0721230 MtrunA17_Chr7g0257331 44.724 199 75 3 18 216 16 179 3.48e-48 162
Msa0721230 MtrunA17_Chr5g0410881 72.000 100 26 1 22 121 30 127 6.74e-46 164
Msa0721230 MtrunA17_Chr8g0375041 42.211 199 85 3 17 215 2 170 9.73e-45 154
Msa0721230 MtrunA17_Chr6g0467041 60.952 105 41 0 24 128 22 126 7.22e-43 151
Msa0721230 MtrunA17_Chr7g0260331 65.957 94 32 0 22 115 47 140 3.52e-42 150
Msa0721230 MtrunA17_Chr1g0185131 67.021 94 31 0 22 115 30 123 5.62e-42 149
Msa0721230 MtrunA17_Chr8g0379701 64.356 101 35 1 15 115 4 103 1.26e-41 150
Msa0721230 MtrunA17_Chr4g0039891 63.265 98 36 0 24 121 12 109 1.77e-40 149
Msa0721230 MtrunA17_Chr4g0047421 37.624 202 89 3 21 218 30 198 2.48e-40 141
Msa0721230 MtrunA17_Chr8g0378061 60.577 104 41 0 25 128 23 126 5.06e-40 147
Msa0721230 MtrunA17_Chr3g0135831 62.500 96 36 0 22 117 44 139 2.76e-38 140
Msa0721230 MtrunA17_Chr4g0071051 63.441 93 34 0 22 114 99 191 5.00e-38 141
Msa0721230 MtrunA17_Chr1g0204741 63.830 94 34 0 22 115 38 131 1.21e-37 138
Msa0721230 MtrunA17_Chr6g0485571 59.184 98 40 0 18 115 5 102 3.90e-37 137
Msa0721230 MtrunA17_Chr2g0330821 52.137 117 56 0 12 128 67 183 7.30e-37 136
Msa0721230 MtrunA17_Chr2g0284481 51.240 121 58 1 11 131 3 122 1.39e-36 136
Msa0721230 MtrunA17_Chr8g0392001 59.140 93 37 1 24 115 22 114 2.65e-32 124
Msa0721230 MtrunA17_Chr1g0179321 63.636 66 24 0 18 83 43 108 2.03e-24 96.3
Msa0721230 MtrunA17_Chr4g0023771 54.054 74 32 2 11 83 3 75 3.10e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721230 AT4G11660.1 49.573 351 134 7 16 355 51 369 3.39e-90 276
Msa0721230 AT5G62020.1 46.302 311 116 8 1 305 1 266 9.70e-82 251
Msa0721230 AT4G36990.1 50.242 207 86 3 12 218 2 191 1.16e-61 199
Msa0721230 AT1G46264.1 37.248 298 172 5 19 306 29 321 4.54e-59 195
Msa0721230 AT2G41690.1 40.930 215 110 2 4 218 20 217 1.51e-48 164
Msa0721230 AT1G32330.1 65.289 121 38 2 1 121 16 132 6.73e-47 166
Msa0721230 AT1G32330.2 65.289 121 38 2 1 121 16 132 7.01e-47 166
Msa0721230 AT4G17750.1 61.667 120 46 0 2 121 30 149 1.37e-46 166
Msa0721230 AT3G02990.1 66.355 107 34 2 9 115 10 114 9.14e-43 155
Msa0721230 AT3G22830.1 67.347 98 32 0 18 115 55 152 6.65e-42 151
Msa0721230 AT4G13980.1 60.000 110 38 1 25 128 24 133 3.01e-40 148
Msa0721230 AT5G16820.1 67.708 96 30 1 20 115 24 118 7.68e-40 147
Msa0721230 AT5G16820.2 67.708 96 30 1 20 115 24 118 7.68e-40 147
Msa0721230 AT5G43840.1 63.830 94 34 0 22 115 17 110 2.74e-39 141
Msa0721230 AT2G26150.1 61.702 94 36 0 22 115 42 135 5.03e-39 142
Msa0721230 AT2G26150.4 61.702 94 36 0 22 115 42 135 5.03e-39 142
Msa0721230 AT3G63350.1 58.763 97 40 0 18 114 22 118 1.28e-38 139
Msa0721230 AT5G03720.2 64.211 95 33 1 21 115 53 146 5.13e-38 141
Msa0721230 AT5G03720.1 64.211 95 33 1 21 115 53 146 5.13e-38 141
Msa0721230 AT3G51910.1 60.215 93 37 0 22 114 27 119 1.09e-37 137
Msa0721230 AT5G54070.1 60.638 94 37 0 21 114 68 161 1.09e-37 138
Msa0721230 AT3G24520.1 65.217 92 32 0 24 115 17 108 1.17e-36 135
Msa0721230 AT4G18880.1 58.824 119 46 2 17 135 9 124 3.09e-35 133
Msa0721230 AT5G45710.3 58.621 116 44 3 20 135 10 121 1.26e-34 130
Msa0721230 AT5G45710.1 58.621 116 44 3 20 135 10 121 1.26e-34 130
Msa0721230 AT1G67970.1 60.215 93 36 1 24 115 19 111 1.01e-33 129
Msa0721230 AT4G18870.1 45.263 95 49 1 20 111 139 233 1.09e-22 97.1
Msa0721230 AT4G18870.1 47.191 89 42 3 25 111 14 99 3.53e-20 90.1
Msa0721230 AT1G77570.1 39.326 89 49 3 25 109 27 114 3.01e-13 67.0

Find 131 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTTCCTAAGCTGTTT+GGG 0.212139 5_1:-17666401 Msa0721230:CDS
TGTAACAGAAGGGAAAATTT+TGG 0.225929 5_1:-17666544 Msa0721230:CDS
TCTTCTTCTGACTCCGTTTC+CGG 0.235189 5_1:-17667657 Msa0721230:five_prime_UTR
GCTAATGAAACATTCCTTAT+AGG 0.235307 5_1:+17666513 None:intergenic
TAAAGGCCGTGTTTGGAATT+TGG 0.236573 5_1:-17666159 Msa0721230:three_prime_UTR
GTGTTTATTTCTAGGGATTT+CGG 0.268121 5_1:-17667025 Msa0721230:intron
AAGCTGTTTGGGGTTTCAAT+TGG 0.272470 5_1:-17666390 Msa0721230:CDS
CCTCATGTTCCTAAGCTGTT+TGG 0.282001 5_1:-17666402 Msa0721230:CDS
ATGATGAGTAATTATGCTTC+TGG 0.326687 5_1:-17666621 Msa0721230:CDS
ATGGAACAAGCTTCATAGTT+TGG 0.332696 5_1:-17667229 Msa0721230:CDS
CCGTTGATGATTTGGTTTCA+TGG 0.341139 5_1:-17667259 Msa0721230:CDS
ATTGAGTTGACGAACGAAAC+TGG 0.358502 5_1:+17667148 None:intergenic
ATGGTGTCTCCAGCAACTTC+TGG 0.358649 5_1:-17666831 Msa0721230:CDS
TGATTCTTCCGTTGATGATT+TGG 0.364300 5_1:-17667267 Msa0721230:CDS
AGGAGAGGATAGGAATAAAA+AGG 0.370793 5_1:+17667740 None:intergenic
CTGCCACCGGCGACGGCGTT+AGG 0.374761 5_1:+17667682 None:intergenic
AACGCATTCCATCTCTTTCA+AGG 0.375340 5_1:-17667622 Msa0721230:intron
GAAGTTGATGGCGACATTAC+CGG 0.375837 5_1:-17667375 Msa0721230:exon
AGCTGTTTGGGGTTTCAATT+GGG 0.377393 5_1:-17666389 Msa0721230:CDS
AGCAACTTCTGGTGATGAAC+AGG 0.397317 5_1:-17666820 Msa0721230:CDS
TTATTGTGTTTGAAATACTT+TGG 0.401377 5_1:+17667176 None:intergenic
CAGACACTAGCTGGTGTCAT+TGG 0.404857 5_1:-17666080 Msa0721230:three_prime_UTR
TGCTGCGACGGCACGGGGCG+TGG 0.405775 5_1:-17666568 Msa0721230:CDS
CTTAATGTGGGTGGAGCTGC+TGG 0.418056 5_1:-17666474 Msa0721230:CDS
TCTAATTTGATACATGTACT+AGG 0.423269 5_1:-17665811 Msa0721230:three_prime_UTR
ATAGTGGTAAAGGCCGTGTT+TGG 0.429939 5_1:-17666166 Msa0721230:exon
TACGAGTGCTGCGACGGCAC+GGG 0.438079 5_1:-17666574 Msa0721230:CDS
ATGCGTTGAAATATTCTAAC+CGG 0.439764 5_1:+17667638 None:intergenic
GACGGAGAATGAGGTTGAAC+CGG 0.444512 5_1:-17666352 Msa0721230:CDS
TTTGGAATTTGGATTATGTC+GGG 0.453154 5_1:-17666148 Msa0721230:three_prime_UTR
ACATGAGGTGCCTCAACCTC+TGG 0.453623 5_1:+17666417 None:intergenic
CGGATGATCAAGAGCGTCGT+TGG 0.460641 5_1:-17666200 Msa0721230:CDS
ATGTGAGACGACGAGTTTGA+TGG 0.466931 5_1:-17666442 Msa0721230:CDS
ATTGTTTACCTTGAAAGAGA+TGG 0.467486 5_1:+17667614 None:intergenic
GCCATAGCTGTTCCTGCTGC+CGG 0.467534 5_1:+17666909 None:intergenic
GTTTGGAATTTGGATTATGT+CGG 0.467678 5_1:-17666149 Msa0721230:three_prime_UTR
TTGGTTTCATGGAATGAAGA+TGG 0.472004 5_1:-17667248 Msa0721230:CDS
TGAAATATTCTAACCGGAAA+CGG 0.475649 5_1:+17667644 None:intergenic
TGTTCATCACCAGAAGTTGC+TGG 0.476217 5_1:+17666822 None:intergenic
GGTGTAATTAGGAACAGATC+TGG 0.477002 5_1:-17667402 Msa0721230:five_prime_UTR
AGAGATTCTAGAAGTTTCGA+AGG 0.477691 5_1:+17667720 None:intergenic
GCACCATTGTTCACCGCAAT+CGG 0.477786 5_1:+17666777 None:intergenic
CGCTAACCTAACGCCGTCGC+CGG 0.479775 5_1:-17667688 Msa0721230:five_prime_UTR
AGATCTGGAAAAGAAGTTGA+TGG 0.487529 5_1:-17667387 Msa0721230:exon
GATTCACCTGTTTGCTCCAC+CGG 0.494684 5_1:+17667356 None:intergenic
ACATTACCGGTGGAGCAAAC+AGG 0.498008 5_1:-17667362 Msa0721230:CDS
TGAACCGGAGAGAGAGGAAC+GGG 0.498202 5_1:-17666337 Msa0721230:CDS
CATGGCTAACAGACACTAGC+TGG 0.498441 5_1:-17666089 Msa0721230:three_prime_UTR
ATGTTACTTGGAAACAAAGT+TGG 0.498921 5_1:+17665770 None:intergenic
GCTGGAGACACCATTCTAAC+CGG 0.500615 5_1:+17666840 None:intergenic
ACTAGGATGCTTCCACCCTA+TGG 0.501720 5_1:-17665794 Msa0721230:three_prime_UTR
GTTGGAAATTGACGAAATAG+TGG 0.503816 5_1:-17666182 Msa0721230:exon
GTCGAATTCATCTCCGATTG+CGG 0.505685 5_1:-17666790 Msa0721230:CDS
ATTGAAACCCCAAACAGCTT+AGG 0.506033 5_1:+17666393 None:intergenic
CAATTGGGCTTAAACGATGT+AGG 0.509913 5_1:-17666374 Msa0721230:CDS
TTAGCAAATTCCCACCGGTC+AGG 0.510367 5_1:+17666993 None:intergenic
TCATTCTCTTCAACTAACTC+CGG 0.512986 5_1:+17666720 None:intergenic
TTCGGAAAGTTGTACCTGAC+CGG 0.514506 5_1:-17667007 Msa0721230:CDS
CTACGAGTGCTGCGACGGCA+CGG 0.515613 5_1:-17666575 Msa0721230:CDS
TTCTAGAAGTTTCGAAGGAG+AGG 0.516926 5_1:+17667725 None:intergenic
ATCTTCTACGAGTGCTGCGA+CGG 0.517274 5_1:-17666580 Msa0721230:CDS
TGTTCCCGTTCCTCTCTCTC+CGG 0.518493 5_1:+17666333 None:intergenic
TGGAAACAAAGTTGGTCCAT+AGG 0.519124 5_1:+17665778 None:intergenic
GGAAACAAAGTTGGTCCATA+GGG 0.527244 5_1:+17665779 None:intergenic
CTGTTAGCCATGTTCAAACA+TGG 0.530720 5_1:+17666100 None:intergenic
TATGGCGGCACCGGTTAGAA+TGG 0.532149 5_1:-17666850 Msa0721230:CDS
AATTGACGAAATAGTGGTAA+AGG 0.534223 5_1:-17666176 Msa0721230:exon
AAAAGGAGCGTGTGTGTTGG+TGG 0.534804 5_1:+17667757 None:intergenic
TCATGTTCCTAAGCTGTTTG+GGG 0.536796 5_1:-17666400 Msa0721230:CDS
AACAGTAGCTATGGCGGCAC+CGG 0.542259 5_1:-17666859 Msa0721230:CDS
TGAGGTTGAACCGGAGAGAG+AGG 0.546548 5_1:-17666343 Msa0721230:CDS
CATGAGTTGCACCACTGCGC+CGG 0.546633 5_1:-17666739 Msa0721230:CDS
CGGTGGGAATTTGCTAATGA+CGG 0.547176 5_1:-17666987 Msa0721230:CDS
GGTGGAGCAAACAGGTGAAT+CGG 0.547365 5_1:-17667354 Msa0721230:CDS
GCCGGCAGCAGGAACAGCTA+TGG 0.547975 5_1:-17666910 Msa0721230:CDS
TAATACTGTAACAGTAGCTA+TGG 0.548334 5_1:-17666868 Msa0721230:CDS
TCTTTCTCTAAGCAAAATTG+TGG 0.554230 5_1:+17665899 None:intergenic
ACGATGTAGGACGGAGAATG+AGG 0.556638 5_1:-17666361 Msa0721230:CDS
ACGAGTGCTGCGACGGCACG+GGG 0.561173 5_1:-17666573 Msa0721230:CDS
TTTGATGGAACCAGAGGTTG+AGG 0.561367 5_1:-17666427 Msa0721230:CDS
GAAGAAACTGCCACCGGCGA+CGG 0.562969 5_1:+17667675 None:intergenic
CTAGCTGGTGTCATTGGACA+AGG 0.568184 5_1:-17666074 Msa0721230:three_prime_UTR
AAATCTCTAGCAAATTCAGC+AGG 0.569125 5_1:+17667203 None:intergenic
ACGCTTGCTTGAGCAAAGCA+TGG 0.569500 5_1:+17665954 None:intergenic
TGGTGATGGTGATGGTGACT+CGG 0.574712 5_1:-17666220 Msa0721230:CDS
TCTCCGATTGCGGTGAACAA+TGG 0.579507 5_1:-17666780 Msa0721230:CDS
CGGGGCGTGGTTGTAACAGA+AGG 0.579523 5_1:-17666555 Msa0721230:CDS
GAAGTTTCGAAGGAGAGGAT+AGG 0.579811 5_1:+17667730 None:intergenic
AACAGGTGAATCGGCGACGG+CGG 0.583900 5_1:-17667345 Msa0721230:CDS
AATGAGCTAAGTCAATTGAA+AGG 0.584859 5_1:-17666666 Msa0721230:CDS
AAGGAATGTTTCATTAGCTG+AGG 0.585509 5_1:-17666508 Msa0721230:CDS
CCTCGTGATGGTGATGGTGA+TGG 0.588325 5_1:-17666228 Msa0721230:CDS
ATCAAACTCGTCGTCTCACA+TGG 0.592517 5_1:+17666444 None:intergenic
AAAGGAGCGTGTGTGTTGGT+GGG 0.603469 5_1:+17667758 None:intergenic
AACAAAGTTGGTCCATAGGG+TGG 0.604166 5_1:+17665782 None:intergenic
GCAAACAGGTGAATCGGCGA+CGG 0.608757 5_1:-17667348 Msa0721230:CDS
AACTTCTGGTGATGAACAGG+TGG 0.612326 5_1:-17666817 Msa0721230:CDS
AGTTAGTTGAAGAGAATGAA+AGG 0.612844 5_1:-17666716 Msa0721230:CDS
CCATGAAACCAAATCATCAA+CGG 0.613347 5_1:+17667259 None:intergenic
TAACCTAACGCCGTCGCCGG+TGG 0.614840 5_1:-17667685 Msa0721230:five_prime_UTR
GGAAAGTTGTACCTGACCGG+TGG 0.614886 5_1:-17667004 Msa0721230:CDS
TCTGAACCTCGTGATGGTGA+TGG 0.617342 5_1:-17666234 Msa0721230:CDS
ATTTGCTTCGAGATATTCAG+CGG 0.621869 5_1:-17666944 Msa0721230:CDS
TTCAACTAACTCCGGCGCAG+TGG 0.622278 5_1:+17666728 None:intergenic
GATGCAAACACAATCCTCGC+AGG 0.623759 5_1:-17666283 Msa0721230:CDS
GCAGGAGACTGATCGAGGAT+CGG 0.626303 5_1:-17666265 Msa0721230:CDS
TCCTCGCAGGAGACTGATCG+AGG 0.628520 5_1:-17666270 Msa0721230:CDS
GAAAGTTGTACCTGACCGGT+GGG 0.631205 5_1:-17667003 Msa0721230:CDS
TACTGTAACAGTAGCTATGG+CGG 0.634074 5_1:-17666865 Msa0721230:CDS
AATGTGGGTGGAGCTGCTGG+CGG 0.634893 5_1:-17666471 Msa0721230:CDS
GGAAAATGTAGTGCTTAATG+TGG 0.635559 5_1:-17666487 Msa0721230:CDS
TTGAACCGGAGAGAGAGGAA+CGG 0.637385 5_1:-17666338 Msa0721230:CDS
AATGTAGTGCTTAATGTGGG+TGG 0.639772 5_1:-17666483 Msa0721230:CDS
ATGACACCCATGTTTGAACA+TGG 0.639922 5_1:-17666107 Msa0721230:three_prime_UTR
GAAAATGTAGTGCTTAATGT+GGG 0.644997 5_1:-17666486 Msa0721230:CDS
CGTCATTAGCAAATTCCCAC+CGG 0.646656 5_1:+17666988 None:intergenic
GACGAGTTTGATGGAACCAG+AGG 0.648812 5_1:-17666433 Msa0721230:CDS
CCAAACAGCTTAGGAACATG+AGG 0.651312 5_1:+17666402 None:intergenic
CATAATCCAAATTCCAAACA+CGG 0.652013 5_1:+17666153 None:intergenic
TCAGAAGAAGAAACTGCCAC+CGG 0.654949 5_1:+17667669 None:intergenic
TGGGCTTAAACGATGTAGGA+CGG 0.657843 5_1:-17666370 Msa0721230:CDS
TCCTCGATCAGTCTCCTGCG+AGG 0.667916 5_1:+17666269 None:intergenic
AGGAACAGCTATGGCGACAG+CGG 0.668564 5_1:-17666901 Msa0721230:CDS
GGGGCGTGGTTGTAACAGAA+GGG 0.668865 5_1:-17666554 Msa0721230:CDS
AAGGAGCGTGTGTGTTGGTG+GGG 0.675490 5_1:+17667759 None:intergenic
GTTGATGGCGACATTACCGG+TGG 0.679162 5_1:-17667372 Msa0721230:exon
GCTAATGACGGATTTCGACG+AGG 0.685443 5_1:-17666975 Msa0721230:CDS
TGTTAGCCATGTTCAAACAT+GGG 0.695320 5_1:+17666101 None:intergenic
GTGAAATCTGAACCTCGTGA+TGG 0.700758 5_1:-17666240 Msa0721230:CDS
CCATCACCATCACCATCACG+AGG 0.701913 5_1:+17666228 None:intergenic
TAGCTGGTGTCATTGGACAA+GGG 0.714141 5_1:-17666073 Msa0721230:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATGATGTTAAATA+TGG + chr5_1:17666077-17666096 None:intergenic 10.0%
!! AATTATTATGATGTTAAATA+TGG + chr5_1:17666077-17666096 None:intergenic 10.0%
!! ATAGATTATTAGATTAGAAT+AGG - chr5_1:17666047-17666066 Msa0721230:three_prime_UTR 15.0%
!!! CATAATAATTTTGTTTGATT+AGG - chr5_1:17666087-17666106 Msa0721230:three_prime_UTR 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG + chr5_1:17666471-17666490 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG - chr5_1:17666471-17666490 Msa0721230:CDS 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG - chr5_1:17666509-17666528 Msa0721230:CDS 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG - chr5_1:17666510-17666529 Msa0721230:CDS 15.0%
!! ATAGATTATTAGATTAGAAT+AGG - chr5_1:17666047-17666066 Msa0721230:three_prime_UTR 15.0%
!!! CATAATAATTTTGTTTGATT+AGG - chr5_1:17666087-17666106 Msa0721230:three_prime_UTR 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG + chr5_1:17666471-17666490 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG - chr5_1:17666471-17666490 Msa0721230:CDS 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG - chr5_1:17666509-17666528 Msa0721230:CDS 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG - chr5_1:17666510-17666529 Msa0721230:CDS 15.0%
!! ACAAAGTATGATATTAACTA+AGG + chr5_1:17665988-17666007 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG - chr5_1:17666118-17666137 Msa0721230:three_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG - chr5_1:17666119-17666138 Msa0721230:three_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr5_1:17666369-17666388 None:intergenic 20.0%
!! ACAAAGTATGATATTAACTA+AGG + chr5_1:17665988-17666007 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG - chr5_1:17666118-17666137 Msa0721230:three_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG - chr5_1:17666119-17666138 Msa0721230:three_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr5_1:17666369-17666388 None:intergenic 20.0%
! TATACTAAGCATGCATAATA+CGG + chr5_1:17666024-17666043 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG - chr5_1:17666129-17666148 Msa0721230:three_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG - chr5_1:17667731-17667750 Msa0721230:five_prime_UTR 25.0%
! TATACTAAGCATGCATAATA+CGG + chr5_1:17666024-17666043 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG - chr5_1:17666129-17666148 Msa0721230:three_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG - chr5_1:17667731-17667750 Msa0721230:five_prime_UTR 25.0%
TGAAATATTCTAACCGGAAA+CGG + chr5_1:17665901-17665920 None:intergenic 30.0%
ATGCGTTGAAATATTCTAAC+CGG + chr5_1:17665907-17665926 None:intergenic 30.0%
ATTGTTTACCTTGAAAGAGA+TGG + chr5_1:17665931-17665950 None:intergenic 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG - chr5_1:17666517-17666536 Msa0721230:CDS 30.0%
TAATACTGTAACAGTAGCTA+TGG - chr5_1:17666674-17666693 Msa0721230:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG - chr5_1:17666826-17666845 Msa0721230:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG - chr5_1:17666876-17666895 Msa0721230:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG - chr5_1:17666921-17666940 Msa0721230:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG - chr5_1:17666998-17667017 Msa0721230:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG - chr5_1:17667015-17667034 Msa0721230:intron 30.0%
GCTAATGAAACATTCCTTAT+AGG + chr5_1:17667032-17667051 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG - chr5_1:17667056-17667075 Msa0721230:intron 30.0%
AATTGACGAAATAGTGGTAA+AGG - chr5_1:17667366-17667385 Msa0721230:CDS 30.0%
CATAATCCAAATTCCAAACA+CGG + chr5_1:17667392-17667411 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG - chr5_1:17667393-17667412 Msa0721230:five_prime_UTR 30.0%
! TTTGGAATTTGGATTATGTC+GGG - chr5_1:17667394-17667413 Msa0721230:five_prime_UTR 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG + chr5_1:17667423-17667442 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG + chr5_1:17667646-17667665 None:intergenic 30.0%
TGAAATATTCTAACCGGAAA+CGG + chr5_1:17665901-17665920 None:intergenic 30.0%
ATGCGTTGAAATATTCTAAC+CGG + chr5_1:17665907-17665926 None:intergenic 30.0%
ATTGTTTACCTTGAAAGAGA+TGG + chr5_1:17665931-17665950 None:intergenic 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG - chr5_1:17666517-17666536 Msa0721230:CDS 30.0%
TAATACTGTAACAGTAGCTA+TGG - chr5_1:17666674-17666693 Msa0721230:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG - chr5_1:17666826-17666845 Msa0721230:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG - chr5_1:17666876-17666895 Msa0721230:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG - chr5_1:17666921-17666940 Msa0721230:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG - chr5_1:17666998-17667017 Msa0721230:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG - chr5_1:17667015-17667034 Msa0721230:intron 30.0%
GCTAATGAAACATTCCTTAT+AGG + chr5_1:17667032-17667051 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG - chr5_1:17667056-17667075 Msa0721230:intron 30.0%
AATTGACGAAATAGTGGTAA+AGG - chr5_1:17667366-17667385 Msa0721230:CDS 30.0%
CATAATCCAAATTCCAAACA+CGG + chr5_1:17667392-17667411 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG - chr5_1:17667393-17667412 Msa0721230:five_prime_UTR 30.0%
! TTTGGAATTTGGATTATGTC+GGG - chr5_1:17667394-17667413 Msa0721230:five_prime_UTR 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG + chr5_1:17667423-17667442 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG + chr5_1:17667646-17667665 None:intergenic 30.0%
AGGAGAGGATAGGAATAAAA+AGG + chr5_1:17665805-17665824 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG + chr5_1:17665825-17665844 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG - chr5_1:17666155-17666174 Msa0721230:three_prime_UTR 35.0%
! TGATACGTTTTCGTCAGAAA+CGG + chr5_1:17666246-17666265 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG - chr5_1:17666275-17666294 Msa0721230:CDS 35.0%
CCATGAAACCAAATCATCAA+CGG + chr5_1:17666286-17666305 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG - chr5_1:17666294-17666313 Msa0721230:CDS 35.0%
ATGGAACAAGCTTCATAGTT+TGG - chr5_1:17666313-17666332 Msa0721230:CDS 35.0%
AAATCTCTAGCAAATTCAGC+AGG + chr5_1:17666342-17666361 None:intergenic 35.0%
ATTTGCTTCGAGATATTCAG+CGG - chr5_1:17666598-17666617 Msa0721230:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG + chr5_1:17666825-17666844 None:intergenic 35.0%
AAGGAATGTTTCATTAGCTG+AGG - chr5_1:17667034-17667053 Msa0721230:intron 35.0%
GGAAAATGTAGTGCTTAATG+TGG - chr5_1:17667055-17667074 Msa0721230:intron 35.0%
GTTGGAAATTGACGAAATAG+TGG - chr5_1:17667360-17667379 Msa0721230:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG + chr5_1:17667444-17667463 None:intergenic 35.0%
AGGAGAGGATAGGAATAAAA+AGG + chr5_1:17665805-17665824 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG + chr5_1:17665825-17665844 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG - chr5_1:17666155-17666174 Msa0721230:three_prime_UTR 35.0%
! TGATACGTTTTCGTCAGAAA+CGG + chr5_1:17666246-17666265 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG - chr5_1:17666275-17666294 Msa0721230:CDS 35.0%
CCATGAAACCAAATCATCAA+CGG + chr5_1:17666286-17666305 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG - chr5_1:17666294-17666313 Msa0721230:CDS 35.0%
ATGGAACAAGCTTCATAGTT+TGG - chr5_1:17666313-17666332 Msa0721230:CDS 35.0%
AAATCTCTAGCAAATTCAGC+AGG + chr5_1:17666342-17666361 None:intergenic 35.0%
ATTTGCTTCGAGATATTCAG+CGG - chr5_1:17666598-17666617 Msa0721230:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG + chr5_1:17666825-17666844 None:intergenic 35.0%
AAGGAATGTTTCATTAGCTG+AGG - chr5_1:17667034-17667053 Msa0721230:intron 35.0%
GGAAAATGTAGTGCTTAATG+TGG - chr5_1:17667055-17667074 Msa0721230:intron 35.0%
GTTGGAAATTGACGAAATAG+TGG - chr5_1:17667360-17667379 Msa0721230:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG + chr5_1:17667444-17667463 None:intergenic 35.0%
! ATAAAAAGGAGCGTGTGTGT+TGG + chr5_1:17665791-17665810 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG + chr5_1:17665820-17665839 None:intergenic 40.0%
AACGCATTCCATCTCTTTCA+AGG - chr5_1:17665920-17665939 Msa0721230:three_prime_UTR 40.0%
GGTGTAATTAGGAACAGATC+TGG - chr5_1:17666140-17666159 Msa0721230:three_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG - chr5_1:17666283-17666302 Msa0721230:CDS 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG + chr5_1:17666397-17666416 None:intergenic 40.0%
TCAGCGGAGAAAAATATTGC+CGG - chr5_1:17666614-17666633 Msa0721230:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG - chr5_1:17666677-17666696 Msa0721230:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG - chr5_1:17667059-17667078 Msa0721230:intron 40.0%
CTCATGTTCCTAAGCTGTTT+GGG - chr5_1:17667141-17667160 Msa0721230:intron 40.0%
TCATGTTCCTAAGCTGTTTG+GGG - chr5_1:17667142-17667161 Msa0721230:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG + chr5_1:17667152-17667171 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG - chr5_1:17667152-17667171 Msa0721230:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG - chr5_1:17667153-17667172 Msa0721230:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG - chr5_1:17667168-17667187 Msa0721230:CDS 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG - chr5_1:17667383-17667402 Msa0721230:exon 40.0%
ATGACACCCATGTTTGAACA+TGG - chr5_1:17667435-17667454 Msa0721230:five_prime_UTR 40.0%
CTGTTAGCCATGTTCAAACA+TGG + chr5_1:17667445-17667464 None:intergenic 40.0%
! ATAAAAAGGAGCGTGTGTGT+TGG + chr5_1:17665791-17665810 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG + chr5_1:17665820-17665839 None:intergenic 40.0%
AACGCATTCCATCTCTTTCA+AGG - chr5_1:17665920-17665939 Msa0721230:three_prime_UTR 40.0%
GGTGTAATTAGGAACAGATC+TGG - chr5_1:17666140-17666159 Msa0721230:three_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG - chr5_1:17666283-17666302 Msa0721230:CDS 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG + chr5_1:17666397-17666416 None:intergenic 40.0%
TCAGCGGAGAAAAATATTGC+CGG - chr5_1:17666614-17666633 Msa0721230:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG - chr5_1:17666677-17666696 Msa0721230:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG - chr5_1:17667059-17667078 Msa0721230:intron 40.0%
CTCATGTTCCTAAGCTGTTT+GGG - chr5_1:17667141-17667160 Msa0721230:intron 40.0%
TCATGTTCCTAAGCTGTTTG+GGG - chr5_1:17667142-17667161 Msa0721230:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG + chr5_1:17667152-17667171 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG - chr5_1:17667152-17667171 Msa0721230:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG - chr5_1:17667153-17667172 Msa0721230:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG - chr5_1:17667168-17667187 Msa0721230:CDS 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG - chr5_1:17667383-17667402 Msa0721230:exon 40.0%
ATGACACCCATGTTTGAACA+TGG - chr5_1:17667435-17667454 Msa0721230:five_prime_UTR 40.0%
CTGTTAGCCATGTTCAAACA+TGG + chr5_1:17667445-17667464 None:intergenic 40.0%
GAAGTTTCGAAGGAGAGGAT+AGG + chr5_1:17665815-17665834 None:intergenic 45.0%
TCAGAAGAAGAAACTGCCAC+CGG + chr5_1:17665876-17665895 None:intergenic 45.0%
TCTTCTTCTGACTCCGTTTC+CGG - chr5_1:17665885-17665904 Msa0721230:three_prime_UTR 45.0%
!! GAAGTTGATGGCGACATTAC+CGG - chr5_1:17666167-17666186 Msa0721230:exon 45.0%
TTCGGAAAGTTGTACCTGAC+CGG - chr5_1:17666535-17666554 Msa0721230:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG + chr5_1:17666557-17666576 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG - chr5_1:17666555-17666574 Msa0721230:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG - chr5_1:17666621-17666640 Msa0721230:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG + chr5_1:17666723-17666742 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG - chr5_1:17666722-17666741 Msa0721230:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG - chr5_1:17666725-17666744 Msa0721230:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG - chr5_1:17666752-17666771 Msa0721230:CDS 45.0%
ATCAAACTCGTCGTCTCACA+TGG + chr5_1:17667101-17667120 None:intergenic 45.0%
ATGTGAGACGACGAGTTTGA+TGG - chr5_1:17667100-17667119 Msa0721230:intron 45.0%
TTTGATGGAACCAGAGGTTG+AGG - chr5_1:17667115-17667134 Msa0721230:intron 45.0%
CCAAACAGCTTAGGAACATG+AGG + chr5_1:17667143-17667162 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG - chr5_1:17667140-17667159 Msa0721230:intron 45.0%
TGGGCTTAAACGATGTAGGA+CGG - chr5_1:17667172-17667191 Msa0721230:CDS 45.0%
GTGAAATCTGAACCTCGTGA+TGG - chr5_1:17667302-17667321 Msa0721230:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG - chr5_1:17667376-17667395 Msa0721230:exon 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG - chr5_1:17667469-17667488 Msa0721230:intron 45.0%
! AACAAAGTTGGTCCATAGGG+TGG + chr5_1:17667763-17667782 None:intergenic 45.0%
GAAGTTTCGAAGGAGAGGAT+AGG + chr5_1:17665815-17665834 None:intergenic 45.0%
TCAGAAGAAGAAACTGCCAC+CGG + chr5_1:17665876-17665895 None:intergenic 45.0%
TCTTCTTCTGACTCCGTTTC+CGG - chr5_1:17665885-17665904 Msa0721230:three_prime_UTR 45.0%
!! GAAGTTGATGGCGACATTAC+CGG - chr5_1:17666167-17666186 Msa0721230:exon 45.0%
TTCGGAAAGTTGTACCTGAC+CGG - chr5_1:17666535-17666554 Msa0721230:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG + chr5_1:17666557-17666576 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG - chr5_1:17666555-17666574 Msa0721230:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG - chr5_1:17666621-17666640 Msa0721230:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG + chr5_1:17666723-17666742 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG - chr5_1:17666722-17666741 Msa0721230:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG - chr5_1:17666725-17666744 Msa0721230:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG - chr5_1:17666752-17666771 Msa0721230:CDS 45.0%
ATCAAACTCGTCGTCTCACA+TGG + chr5_1:17667101-17667120 None:intergenic 45.0%
ATGTGAGACGACGAGTTTGA+TGG - chr5_1:17667100-17667119 Msa0721230:intron 45.0%
TTTGATGGAACCAGAGGTTG+AGG - chr5_1:17667115-17667134 Msa0721230:intron 45.0%
CCAAACAGCTTAGGAACATG+AGG + chr5_1:17667143-17667162 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG - chr5_1:17667140-17667159 Msa0721230:intron 45.0%
TGGGCTTAAACGATGTAGGA+CGG - chr5_1:17667172-17667191 Msa0721230:CDS 45.0%
GTGAAATCTGAACCTCGTGA+TGG - chr5_1:17667302-17667321 Msa0721230:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG - chr5_1:17667376-17667395 Msa0721230:exon 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG - chr5_1:17667469-17667488 Msa0721230:intron 45.0%
! AACAAAGTTGGTCCATAGGG+TGG + chr5_1:17667763-17667782 None:intergenic 45.0%
!! AAATTAATTAATTGATTATA+TGG + chr5_1:17665964-17665983 None:intergenic 5.0%
!! AAATTAATTAATTGATTATA+TGG + chr5_1:17665964-17665983 None:intergenic 5.0%
! AAAGGAGCGTGTGTGTTGGT+GGG + chr5_1:17665787-17665806 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG + chr5_1:17665788-17665807 None:intergenic 50.0%
ACATTACCGGTGGAGCAAAC+AGG - chr5_1:17666180-17666199 Msa0721230:exon 50.0%
GATTCACCTGTTTGCTCCAC+CGG + chr5_1:17666189-17666208 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG - chr5_1:17666188-17666207 Msa0721230:CDS 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG + chr5_1:17666240-17666259 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG - chr5_1:17666539-17666558 Msa0721230:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG + chr5_1:17666552-17666571 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG - chr5_1:17666567-17666586 Msa0721230:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG + chr5_1:17666705-17666724 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG - chr5_1:17666711-17666730 Msa0721230:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG - chr5_1:17666762-17666781 Msa0721230:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG + chr5_1:17666768-17666787 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG - chr5_1:17666962-17666981 Msa0721230:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG - chr5_1:17667109-17667128 Msa0721230:intron 50.0%
ACGATGTAGGACGGAGAATG+AGG - chr5_1:17667181-17667200 Msa0721230:CDS 50.0%
GACGGAGAATGAGGTTGAAC+CGG - chr5_1:17667190-17667209 Msa0721230:CDS 50.0%
TTGAACCGGAGAGAGAGGAA+CGG - chr5_1:17667204-17667223 Msa0721230:CDS 50.0%
GATGCAAACACAATCCTCGC+AGG - chr5_1:17667259-17667278 Msa0721230:CDS 50.0%
! TCTGAACCTCGTGATGGTGA+TGG - chr5_1:17667308-17667327 Msa0721230:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG - chr5_1:17667322-17667341 Msa0721230:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG - chr5_1:17667453-17667472 Msa0721230:intron 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG - chr5_1:17667462-17667481 Msa0721230:intron 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG - chr5_1:17667468-17667487 Msa0721230:intron 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG + chr5_1:17667591-17667610 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG - chr5_1:17667748-17667767 Msa0721230:five_prime_UTR 50.0%
! AAAGGAGCGTGTGTGTTGGT+GGG + chr5_1:17665787-17665806 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG + chr5_1:17665788-17665807 None:intergenic 50.0%
ACATTACCGGTGGAGCAAAC+AGG - chr5_1:17666180-17666199 Msa0721230:exon 50.0%
GATTCACCTGTTTGCTCCAC+CGG + chr5_1:17666189-17666208 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG - chr5_1:17666188-17666207 Msa0721230:CDS 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG + chr5_1:17666240-17666259 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG - chr5_1:17666539-17666558 Msa0721230:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG + chr5_1:17666552-17666571 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG - chr5_1:17666567-17666586 Msa0721230:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG + chr5_1:17666705-17666724 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG - chr5_1:17666711-17666730 Msa0721230:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG - chr5_1:17666762-17666781 Msa0721230:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG + chr5_1:17666768-17666787 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG - chr5_1:17666962-17666981 Msa0721230:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG - chr5_1:17667109-17667128 Msa0721230:intron 50.0%
ACGATGTAGGACGGAGAATG+AGG - chr5_1:17667181-17667200 Msa0721230:CDS 50.0%
GACGGAGAATGAGGTTGAAC+CGG - chr5_1:17667190-17667209 Msa0721230:CDS 50.0%
TTGAACCGGAGAGAGAGGAA+CGG - chr5_1:17667204-17667223 Msa0721230:CDS 50.0%
GATGCAAACACAATCCTCGC+AGG - chr5_1:17667259-17667278 Msa0721230:CDS 50.0%
! TCTGAACCTCGTGATGGTGA+TGG - chr5_1:17667308-17667327 Msa0721230:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG - chr5_1:17667322-17667341 Msa0721230:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG - chr5_1:17667453-17667472 Msa0721230:intron 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG - chr5_1:17667462-17667481 Msa0721230:intron 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG - chr5_1:17667468-17667487 Msa0721230:intron 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG + chr5_1:17667591-17667610 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG - chr5_1:17667748-17667767 Msa0721230:five_prime_UTR 50.0%
! AAGGAGCGTGTGTGTTGGTG+GGG + chr5_1:17665786-17665805 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG - chr5_1:17666170-17666189 Msa0721230:exon 55.0%
GCAAACAGGTGAATCGGCGA+CGG - chr5_1:17666194-17666213 Msa0721230:CDS 55.0%
GGAAAGTTGTACCTGACCGG+TGG - chr5_1:17666538-17666557 Msa0721230:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG - chr5_1:17666641-17666660 Msa0721230:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG - chr5_1:17666683-17666702 Msa0721230:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG - chr5_1:17666692-17666711 Msa0721230:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG + chr5_1:17666817-17666836 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG - chr5_1:17666988-17667007 Msa0721230:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG - chr5_1:17667068-17667087 Msa0721230:intron 55.0%
! ACATGAGGTGCCTCAACCTC+TGG + chr5_1:17667128-17667147 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG - chr5_1:17667199-17667218 Msa0721230:CDS 55.0%
TGAACCGGAGAGAGAGGAAC+GGG - chr5_1:17667205-17667224 Msa0721230:CDS 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG + chr5_1:17667212-17667231 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG - chr5_1:17667277-17667296 Msa0721230:CDS 55.0%
CCATCACCATCACCATCACG+AGG + chr5_1:17667317-17667336 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG - chr5_1:17667314-17667333 Msa0721230:CDS 55.0%
!! CGGATGATCAAGAGCGTCGT+TGG - chr5_1:17667342-17667361 Msa0721230:CDS 55.0%
! AAGGAGCGTGTGTGTTGGTG+GGG + chr5_1:17665786-17665805 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG - chr5_1:17666170-17666189 Msa0721230:exon 55.0%
GCAAACAGGTGAATCGGCGA+CGG - chr5_1:17666194-17666213 Msa0721230:CDS 55.0%
GGAAAGTTGTACCTGACCGG+TGG - chr5_1:17666538-17666557 Msa0721230:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG - chr5_1:17666641-17666660 Msa0721230:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG - chr5_1:17666683-17666702 Msa0721230:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG - chr5_1:17666692-17666711 Msa0721230:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG + chr5_1:17666817-17666836 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG - chr5_1:17666988-17667007 Msa0721230:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG - chr5_1:17667068-17667087 Msa0721230:intron 55.0%
! ACATGAGGTGCCTCAACCTC+TGG + chr5_1:17667128-17667147 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG - chr5_1:17667199-17667218 Msa0721230:CDS 55.0%
TGAACCGGAGAGAGAGGAAC+GGG - chr5_1:17667205-17667224 Msa0721230:CDS 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG + chr5_1:17667212-17667231 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG - chr5_1:17667277-17667296 Msa0721230:CDS 55.0%
CCATCACCATCACCATCACG+AGG + chr5_1:17667317-17667336 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG - chr5_1:17667314-17667333 Msa0721230:CDS 55.0%
!! CGGATGATCAAGAGCGTCGT+TGG - chr5_1:17667342-17667361 Msa0721230:CDS 55.0%
GAAGAAACTGCCACCGGCGA+CGG + chr5_1:17665870-17665889 None:intergenic 60.0%
AACAGGTGAATCGGCGACGG+CGG - chr5_1:17666197-17666216 Msa0721230:CDS 60.0%
GCCATAGCTGTTCCTGCTGC+CGG + chr5_1:17666636-17666655 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG - chr5_1:17666803-17666822 Msa0721230:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG - chr5_1:17666987-17667006 Msa0721230:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG - chr5_1:17667071-17667090 Msa0721230:intron 60.0%
TCCTCGCAGGAGACTGATCG+AGG - chr5_1:17667272-17667291 Msa0721230:CDS 60.0%
TCCTCGATCAGTCTCCTGCG+AGG + chr5_1:17667276-17667295 None:intergenic 60.0%
GAAGAAACTGCCACCGGCGA+CGG + chr5_1:17665870-17665889 None:intergenic 60.0%
AACAGGTGAATCGGCGACGG+CGG - chr5_1:17666197-17666216 Msa0721230:CDS 60.0%
GCCATAGCTGTTCCTGCTGC+CGG + chr5_1:17666636-17666655 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG - chr5_1:17666803-17666822 Msa0721230:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG - chr5_1:17666987-17667006 Msa0721230:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG - chr5_1:17667071-17667090 Msa0721230:intron 60.0%
TCCTCGCAGGAGACTGATCG+AGG - chr5_1:17667272-17667291 Msa0721230:CDS 60.0%
TCCTCGATCAGTCTCCTGCG+AGG + chr5_1:17667276-17667295 None:intergenic 60.0%
CGCTAACCTAACGCCGTCGC+CGG - chr5_1:17665854-17665873 Msa0721230:three_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG - chr5_1:17665857-17665876 Msa0721230:three_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG - chr5_1:17666632-17666651 Msa0721230:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG - chr5_1:17666967-17666986 Msa0721230:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG - chr5_1:17666968-17666987 Msa0721230:CDS 65.0%
CGCTAACCTAACGCCGTCGC+CGG - chr5_1:17665854-17665873 Msa0721230:three_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG - chr5_1:17665857-17665876 Msa0721230:three_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG - chr5_1:17666632-17666651 Msa0721230:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG - chr5_1:17666967-17666986 Msa0721230:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG - chr5_1:17666968-17666987 Msa0721230:CDS 65.0%
! ACGAGTGCTGCGACGGCACG+GGG - chr5_1:17666969-17666988 Msa0721230:CDS 70.0%
! ACGAGTGCTGCGACGGCACG+GGG - chr5_1:17666969-17666988 Msa0721230:CDS 70.0%
CTGCCACCGGCGACGGCGTT+AGG + chr5_1:17665863-17665882 None:intergenic 75.0%
CTGCCACCGGCGACGGCGTT+AGG + chr5_1:17665863-17665882 None:intergenic 75.0%
! TGCTGCGACGGCACGGGGCG+TGG - chr5_1:17666974-17666993 Msa0721230:CDS 80.0%
! TGCTGCGACGGCACGGGGCG+TGG - chr5_1:17666974-17666993 Msa0721230:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17665781 17667783 17665781 ID=Msa0721230;Name=Msa0721230
chr5_1 mRNA 17665781 17667783 17665781 ID=Msa0721230-mRNA-1;Parent=Msa0721230;Name=Msa0721230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=226|1|1|1|0.5|0.33|3|404|365
chr5_1 exon 17665781 17667033 17665781 ID=Msa0721230-mRNA-1:exon:6744;Parent=Msa0721230-mRNA-1
chr5_1 exon 17667142 17667455 17667142 ID=Msa0721230-mRNA-1:exon:6743;Parent=Msa0721230-mRNA-1
chr5_1 exon 17667623 17667783 17667623 ID=Msa0721230-mRNA-1:exon:6742;Parent=Msa0721230-mRNA-1
chr5_1 five_prime_UTR 17667623 17667783 17667623 ID=Msa0721230-mRNA-1:five_prime_utr;Parent=Msa0721230-mRNA-1
chr5_1 five_prime_UTR 17667391 17667455 17667391 ID=Msa0721230-mRNA-1:five_prime_utr;Parent=Msa0721230-mRNA-1
chr5_1 CDS 17667142 17667390 17667142 ID=Msa0721230-mRNA-1:cds;Parent=Msa0721230-mRNA-1
chr5_1 CDS 17666185 17667033 17666185 ID=Msa0721230-mRNA-1:cds;Parent=Msa0721230-mRNA-1
chr5_1 three_prime_UTR 17665781 17666184 17665781 ID=Msa0721230-mRNA-1:three_prime_utr;Parent=Msa0721230-mRNA-1
Gene Sequence

>Msa0721230

ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCGATTCCGACGCCGTTTCTGACGAAAACGTATCAACTTGTTGATGATTCTTCCGTTGATGATTTGGTTTCATGGAATGAAGATGGAACAAGCTTCATAGTTTGGAAGCCTGCTGAATTTGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGTTTCGTTCGTCAACTCAATACTTATGGATTTCGGAAAGTTGTACCTGACCGGTGGGAATTTGCTAATGACGGATTTCGACGAGGCGAGAAAAATTTGCTTCGAGATATTCAGCGGAGAAAAATATTGCCGGCAGCAGGAACAGCTATGGCGACAGCGGTAGCTGCAGCTAATACTGTAACAGTAGCTATGGCGGCACCGGTTAGAATGGTGTCTCCAGCAACTTCTGGTGATGAACAGGTGGTTTCGTCGAATTCATCTCCGATTGCGGTGAACAATGGTGCTACAGTGCAGCGTAGCATGAGTTGCACCACTGCGCCGGAGTTAGTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAATTGAGTAATGAGCTAAGTCAATTGAAAGGTCTTTGTAATAATATACTTGCTATGATGAGTAATTATGCTTCTGGTTTTAGTAGACAGTTAGAATCTTCTACGAGTGCTGCGACGGCACGGGGCGTGGTTGTAACAGAAGGGAAAATTTTGGATCTTTTGCCTATAAGGAATGTTTCATTAGCTGAGGAAAATGTAGTGCTTAATGTGGGTGGAGCTGCTGGCGGTGTGCCATGTGAGACGACGAGTTTGATGGAACCAGAGGTTGAGGCACCTCATGTTCCTAAGCTGTTTGGGGTTTCAATTGGGCTTAAACGATGTAGGACGGAGAATGAGGTTGAACCGGAGAGAGAGGAACGGGAACAGCATCAACAAATTCGAATGCAAGTGCAGATGCAAACACAATCCTCGCAGGAGACTGATCGAGGATCGGATGTGAAATCTGAACCTCGTGATGGTGATGGTGATGGTGACTCGGATGATCAAGAGCGTCGTTGGAAATTGACGAAATAG

Protein sequence

>Msa0721230

MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANTVTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRSMSCTTAPELVEENERLKKENMQLSNELSQLKGLCNNILAMMSNYASGFSRQLESSTSAATARGVVVTEGKILDLLPIRNVSLAEENVVLNVGGAAGGVPCETTSLMEPEVEAPHVPKLFGVSIGLKRCRTENEVEPEREEREQHQQIRMQVQMQTQSSQETDRGSDVKSEPRDGDGDGDSDDQERRWKLTK*