AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0631130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631130 MtrunA17_Chr4g0008521 96.154 572 22 0 1 572 1 572 0.0 1148
Msa0631130 MtrunA17_Chr7g0240971 62.435 575 208 5 1 572 1 570 0.0 718
Msa0631130 MtrunA17_Chr7g0240991 57.544 570 228 9 10 572 9 571 0.0 686
Msa0631130 MtrunA17_Chr5g0404361 46.372 565 286 6 8 572 64 611 0.0 539
Msa0631130 MtrunA17_Chr5g0437681 48.330 569 271 9 14 572 12 567 0.0 538
Msa0631130 MtrunA17_Chr5g0431581 47.865 562 277 8 14 572 12 560 0.0 531
Msa0631130 MtrunA17_Chr3g0114211 48.682 569 271 10 12 572 15 570 0.0 526
Msa0631130 MtrunA17_Chr5g0404341 44.681 564 293 7 12 572 19 566 1.26e-176 511
Msa0631130 MtrunA17_Chr5g0429511 44.928 552 289 4 21 572 22 558 1.79e-174 505
Msa0631130 MtrunA17_Chr4g0005921 45.439 570 292 5 8 572 2 557 5.49e-174 504
Msa0631130 MtrunA17_Chr7g0238981 45.455 561 276 7 27 572 48 593 5.12e-173 503
Msa0631130 MtrunA17_Chr7g0238941 45.581 577 293 6 4 572 15 578 1.31e-172 501
Msa0631130 MtrunA17_Chr3g0104061 44.283 551 291 4 22 572 22 556 1.65e-172 500
Msa0631130 MtrunA17_Chr7g0237491 45.641 585 287 10 7 572 8 580 1.86e-169 493
Msa0631130 MtrunA17_Chr7g0237441 45.105 572 288 9 15 572 21 580 1.95e-166 485
Msa0631130 MtrunA17_Chr5g0436461 43.937 569 296 7 4 572 9 554 1.98e-166 484
Msa0631130 MtrunA17_Chr7g0238351 45.406 566 284 9 21 572 27 581 2.02e-166 485
Msa0631130 MtrunA17_Chr4g0031901 45.191 551 281 8 13 555 31 568 3.99e-165 482
Msa0631130 MtrunA17_Chr2g0278811 40.796 603 308 9 5 572 19 607 2.23e-162 476
Msa0631130 MtrunA17_Chr8g0346581 41.241 548 307 8 28 572 36 571 4.91e-152 448
Msa0631130 MtrunA17_Chr3g0133861 41.228 342 182 11 228 562 1 330 2.83e-75 243
Msa0631130 MtrunA17_Chr3g0133871 47.959 196 101 1 12 206 17 212 2.55e-61 202
Msa0631130 MtrunA17_Chr8g0382691 29.663 563 324 18 21 551 29 551 4.34e-60 209
Msa0631130 MtrunA17_Chr3g0118321 28.720 578 351 17 1 550 1 545 9.19e-55 194
Msa0631130 MtrunA17_Chr3g0118331 28.086 559 335 17 23 550 22 544 1.13e-46 172
Msa0631130 MtrunA17_Chr5g0436431 37.657 239 134 5 292 530 5 228 4.22e-45 159
Msa0631130 MtrunA17_Chr4g0056511 26.270 571 373 12 14 572 15 549 1.38e-39 152
Msa0631130 MtrunA17_Chr3g0079321 25.473 581 394 11 1 572 1 551 2.19e-39 152
Msa0631130 MtrunA17_Chr4g0038671 25.783 543 337 18 11 538 7 498 1.30e-31 129
Msa0631130 MtrunA17_Chr3g0143671 25.424 531 339 14 49 572 53 533 3.57e-31 127
Msa0631130 MtrunA17_Chr8g0374271 25.532 517 315 15 29 532 34 493 3.45e-30 124
Msa0631130 MtrunA17_Chr8g0374261 25.097 518 316 16 29 532 32 491 3.69e-30 124
Msa0631130 MtrunA17_Chr5g0402831 25.906 552 348 16 28 572 33 530 1.06e-29 123
Msa0631130 MtrunA17_Chr3g0121161 24.638 552 370 16 8 554 48 558 1.31e-29 123
Msa0631130 MtrunA17_Chr3g0121171 24.501 551 372 15 8 554 1158 1668 1.84e-29 124
Msa0631130 MtrunA17_Chr3g0121171 24.457 552 371 16 8 554 583 1093 3.66e-29 123
Msa0631130 MtrunA17_Chr3g0121171 24.490 539 363 15 20 554 20 518 3.10e-28 120
Msa0631130 MtrunA17_Chr3g0121171 23.732 552 366 17 8 554 1733 2234 1.10e-23 106
Msa0631130 MtrunA17_Chr3g0121151 24.729 554 367 17 8 554 48 558 4.35e-29 121
Msa0631130 MtrunA17_Chr4g0024861 24.501 551 361 16 28 572 29 530 6.96e-29 120
Msa0631130 MtrunA17_Chr2g0322441 25.227 551 357 16 28 572 32 533 1.27e-28 120
Msa0631130 MtrunA17_Chr4g0043261 23.315 549 373 15 8 552 7 511 2.35e-27 116
Msa0631130 MtrunA17_Chr1g0157341 23.774 530 349 14 49 572 52 532 4.54e-27 115
Msa0631130 MtrunA17_Chr7g0234061 24.812 532 338 19 19 532 22 509 2.51e-26 113
Msa0631130 MtrunA17_Chr4g0043251 24.952 517 338 17 43 552 44 517 5.20e-25 108
Msa0631130 MtrunA17_Chr4g0075071 25.000 500 310 13 49 537 54 499 1.79e-22 101
Msa0631130 MtrunA17_Chr3g0118341 36.000 150 92 4 28 175 28 175 6.19e-22 94.4
Msa0631130 MtrunA17_Chr3g0118351 28.135 327 206 11 238 550 5 316 1.33e-19 90.5
Msa0631130 MtrunA17_Chr4g0024641 24.222 450 285 17 92 535 17 416 2.15e-15 79.7
Msa0631130 MtrunA17_Chr1g0197311 29.469 207 108 7 44 217 42 243 2.44e-13 70.1
Msa0631130 MtrunA17_Chr3g0118931 39.130 69 42 0 482 550 10 78 3.40e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631130 AT3G09220.1 58.590 553 214 7 8 555 8 550 0.0 673
Msa0631130 AT5G01050.1 54.690 565 242 5 12 572 14 568 0.0 650
Msa0631130 AT5G01040.1 53.043 575 255 8 1 572 4 566 0.0 640
Msa0631130 AT3G09220.2 58.658 462 176 7 99 555 2 453 0.0 556
Msa0631130 AT5G05390.1 48.421 570 280 7 6 572 7 565 0.0 551
Msa0631130 AT2G40370.1 46.967 577 278 9 13 572 15 580 0.0 527
Msa0631130 AT2G30210.1 46.886 578 282 8 6 572 7 570 0.0 525
Msa0631130 AT5G03260.1 46.667 570 286 6 4 572 5 557 0.0 523
Msa0631130 AT5G07130.1 47.396 576 277 11 11 572 6 569 2.83e-176 510
Msa0631130 AT5G58910.2 46.561 567 283 6 12 572 15 567 3.63e-176 510
Msa0631130 AT2G38080.1 44.677 573 297 7 1 572 5 558 1.13e-175 508
Msa0631130 AT5G58910.3 46.737 567 281 7 12 572 15 566 2.18e-175 508
Msa0631130 AT2G29130.1 45.804 572 294 6 8 572 11 573 4.16e-174 505
Msa0631130 AT5G01190.1 45.826 563 288 6 12 572 11 558 6.33e-170 494
Msa0631130 AT5G58910.1 46.753 539 261 6 39 572 6 523 7.26e-169 490
Msa0631130 AT5G60020.1 44.271 576 295 6 13 572 12 577 2.94e-168 490
Msa0631130 AT5G60020.3 45.471 552 275 6 37 572 4 545 1.07e-167 488
Msa0631130 AT5G09360.1 43.262 564 297 9 14 572 24 569 1.51e-167 488
Msa0631130 AT5G01190.2 45.293 563 277 7 12 572 11 544 5.69e-164 478
Msa0631130 AT1G18140.1 43.494 561 287 9 30 572 33 581 9.76e-158 464
Msa0631130 AT2G46570.1 42.806 556 297 9 23 572 29 569 4.38e-155 456
Msa0631130 AT5G60020.2 43.820 534 274 6 13 530 12 535 3.56e-149 441
Msa0631130 AT5G07130.2 47.870 493 234 10 91 572 4 484 3.93e-149 438
Msa0631130 AT5G07130.3 47.870 493 234 10 91 572 4 484 3.93e-149 438
Msa0631130 AT5G48100.1 40.934 557 300 12 12 555 6 546 1.02e-144 430
Msa0631130 AT2G46570.2 42.137 496 272 7 80 572 1 484 7.38e-135 402
Msa0631130 AT5G21100.1 29.565 575 341 17 21 567 19 557 7.20e-62 214
Msa0631130 AT4G39830.1 28.916 581 329 19 13 551 23 561 2.54e-59 207
Msa0631130 AT5G21105.1 27.944 569 352 13 10 550 20 558 3.20e-58 204
Msa0631130 AT5G21105.3 27.322 549 341 13 10 530 20 538 3.15e-49 179
Msa0631130 AT4G39830.2 28.346 508 281 18 85 551 1 466 3.52e-44 164
Msa0631130 AT4G39830.3 28.429 503 277 18 90 551 4 464 1.13e-43 162
Msa0631130 AT4G39830.4 27.811 507 272 17 85 551 1 453 6.28e-41 155
Msa0631130 AT5G51480.1 25.744 571 376 14 14 572 16 550 8.23e-41 156
Msa0631130 AT4G25240.2 27.225 573 368 16 12 572 15 550 2.75e-40 155
Msa0631130 AT4G25240.1 27.225 573 368 16 12 572 15 550 2.75e-40 155
Msa0631130 AT4G12420.1 24.764 529 358 13 12 532 11 507 1.33e-34 138
Msa0631130 AT4G12420.2 24.764 529 358 13 12 532 11 507 1.33e-34 138
Msa0631130 AT1G41830.1 25.835 569 363 17 14 572 12 531 1.32e-33 135
Msa0631130 AT4G37160.1 24.698 579 370 14 4 572 12 534 1.50e-32 132
Msa0631130 AT1G21860.1 25.564 532 337 18 14 538 17 496 4.55e-32 130
Msa0631130 AT5G48450.2 24.022 537 366 15 14 547 17 514 6.03e-32 130
Msa0631130 AT1G76160.1 25.130 577 371 18 7 572 4 530 9.75e-32 129
Msa0631130 AT5G48450.1 24.022 537 366 15 14 547 17 514 1.66e-31 129
Msa0631130 AT1G55560.1 26.070 514 326 15 28 532 28 496 4.42e-31 127
Msa0631130 AT1G75790.1 24.655 580 363 20 14 572 15 541 7.63e-31 127
Msa0631130 AT1G21850.1 25.352 497 312 17 49 538 52 496 6.21e-30 124
Msa0631130 AT2G23630.1 25.138 545 362 13 29 572 33 532 9.32e-30 124
Msa0631130 AT2G23630.2 25.138 545 362 13 29 572 38 537 1.33e-29 123
Msa0631130 AT5G66920.1 24.417 557 352 15 28 572 39 538 9.73e-29 120
Msa0631130 AT3G13400.2 24.561 513 335 13 28 532 29 497 9.88e-28 117
Msa0631130 AT3G13400.1 24.561 513 335 13 28 532 29 497 9.88e-28 117
Msa0631130 AT4G22010.1 25.326 537 333 17 49 572 49 530 1.70e-27 117
Msa0631130 AT5G21105.2 25.948 343 225 5 211 550 51 367 2.00e-27 115
Msa0631130 AT4G37160.2 28.349 321 212 5 4 323 12 315 2.62e-26 112
Msa0631130 AT1G55570.1 24.482 531 353 13 12 532 8 500 2.13e-25 110
Msa0631130 AT3G13390.1 29.932 294 196 5 28 320 30 314 1.23e-24 108
Msa0631130 AT4G28090.1 23.200 500 324 15 43 532 45 494 2.77e-20 95.1
Msa0631130 AT4G38420.2 28.405 257 160 7 37 285 41 281 4.07e-18 87.8
Msa0631130 AT4G38420.3 28.405 257 160 7 37 285 41 281 9.50e-18 87.0
Msa0631130 AT4G38420.1 28.405 257 160 7 37 285 41 281 1.45e-17 86.7

Find 145 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAAAATGTGTCATATT+TGG 0.185163 4_3:-13777825 None:intergenic
TTAAACATTATGCAGGTATT+TGG 0.193690 4_3:+13783080 Msa0631130:intron
GGGCATTGGGTTACATATTC+TGG 0.208610 4_3:-13780220 None:intergenic
AATTCAAATGGTGGTTGATT+TGG 0.228784 4_3:-13782658 None:intergenic
GAAAGAATAGGCAAACATTT+TGG 0.246426 4_3:-13783350 None:intergenic
AATTAACTCAAGAATTTATA+AGG 0.257962 4_3:-13783246 None:intergenic
TCATGGTTATCAGGCATAAT+TGG 0.277334 4_3:-13781844 None:intergenic
TCAATTTGATAAATGTTTAC+AGG 0.279128 4_3:-13783397 None:intergenic
GAACACATGTTCATAACTTT+TGG 0.285867 4_3:+13782466 Msa0631130:CDS
GTCTTCACCTTAGTTGATTT+AGG 0.296358 4_3:-13782739 None:intergenic
TCAACAATTAATGGCTTATC+TGG 0.303948 4_3:+13780866 Msa0631130:CDS
AATCATCCTATTCATATTCA+TGG 0.310005 4_3:+13782823 Msa0631130:CDS
ACCTACCAATTTAACCTAAC+TGG 0.312872 4_3:+13780265 Msa0631130:CDS
CTTGTCCAGTTAGGTTAAAT+TGG 0.320988 4_3:-13780270 None:intergenic
TCAAATGCATCAACAATTAA+TGG 0.327150 4_3:+13780857 Msa0631130:CDS
GGGACTTCTTGATAAACCTT+TGG 0.333644 4_3:-13780391 None:intergenic
TCAGGCATAATTGGCATTAT+AGG 0.339643 4_3:-13781835 None:intergenic
CCTACAATCTTACTCTTCAT+TGG 0.348502 4_3:+13778774 Msa0631130:CDS
TAATTATACTGACCCTTCAT+TGG 0.349425 4_3:+13782681 Msa0631130:CDS
TCCTCTAGTGGTTATGTTAG+TGG 0.350570 4_3:-13781776 None:intergenic
CACCAGATGGTATTGGGCAT+TGG 0.364496 4_3:-13780234 None:intergenic
AGCTGCCACCAGATGGTATT+GGG 0.364532 4_3:-13780240 None:intergenic
CTACAAAATACAGCTATTCT+TGG 0.369525 4_3:+13782793 Msa0631130:CDS
TTGGCTTGTACATTGTCATT+TGG 0.376918 4_3:+13783099 Msa0631130:CDS
GACGTTGTGGTGCTTGCGCC+TGG 0.380297 4_3:+13781664 Msa0631130:CDS
CCCTCTCGAGCATTAATTGT+TGG 0.386584 4_3:-13778716 None:intergenic
AAAACAATACCAAGCAATAT+GGG 0.389972 4_3:-13780412 None:intergenic
GTTGGTGTATCATGGTTATC+AGG 0.392956 4_3:-13781853 None:intergenic
AATTGAAGACTTACGATCTT+GGG 0.401325 4_3:-13780906 None:intergenic
ACCAGATGGTATTGGGCATT+GGG 0.403258 4_3:-13780233 None:intergenic
TCATCTACTTTACGTGGAAC+TGG 0.407962 4_3:-13782445 None:intergenic
TACAAAATACAGCTATTCTT+GGG 0.408559 4_3:+13782794 Msa0631130:CDS
TAATTGAAGACTTACGATCT+TGG 0.410547 4_3:-13780907 None:intergenic
TAGCTACAACTGTGAAACTA+TGG 0.411298 4_3:-13781609 None:intergenic
TCCTCCCACTGGCACAGAAA+TGG 0.414706 4_3:-13782941 None:intergenic
TCCTGGTAAGGTTCCATTGA+CGG 0.426598 4_3:-13778693 None:intergenic
GTGTACCCTCTTGTCCAGTT+AGG 0.427115 4_3:-13780279 None:intergenic
TTTCTGTGCCAGTGGGAGGA+TGG 0.429026 4_3:+13782944 Msa0631130:CDS
TTAAAACCATGAATATGAAT+AGG 0.429980 4_3:-13782829 None:intergenic
GGACTTCTTGATAAACCTTT+GGG 0.434862 4_3:-13780390 None:intergenic
GTTGAGAATGGGCCTACTCT+TGG 0.437907 4_3:+13783160 Msa0631130:CDS
CTAGTCGTGGCTTAATGATA+AGG 0.437923 4_3:-13780351 None:intergenic
TTTGTTCTTCCTAGGGGTAG+AGG 0.437924 4_3:+13782577 Msa0631130:CDS
TCAAGAGAACGTCAACGGTT+TGG 0.441613 4_3:-13781687 None:intergenic
TTCCTACGTGCTACTGTCCA+TGG 0.442379 4_3:+13780325 Msa0631130:CDS
AATTATACTGACCCTTCATT+GGG 0.445679 4_3:+13782682 Msa0631130:CDS
CCAATGAAGAGTAAGATTGT+AGG 0.448345 4_3:-13778774 None:intergenic
GAAGCTAATAGAAGAGCAAA+AGG 0.450795 4_3:-13777861 None:intergenic
TTCTGTGCCAGTGGGAGGAT+GGG 0.454325 4_3:+13782945 Msa0631130:CDS
CAGGTTATCACTGCCGTCAA+TGG 0.458437 4_3:+13778680 Msa0631130:CDS
CACTATGATGTTGAAAGAAT+AGG 0.458865 4_3:-13783362 None:intergenic
ATATATACAGGTTTAACAAC+TGG 0.461888 4_3:+13782409 Msa0631130:intron
TTTAACAACTGGTCCACATT+GGG 0.462574 4_3:+13782420 Msa0631130:CDS
ATTGATAATGCGTAGTAAGT+AGG 0.465795 4_3:-13781548 None:intergenic
AGAGGAGTTGTTGTTTATGA+TGG 0.466459 4_3:+13781793 Msa0631130:CDS
TTATATCATACCTGTAACAT+TGG 0.468461 4_3:-13781893 None:intergenic
ATTTGCACCTAAATCAACTA+AGG 0.469161 4_3:+13782732 Msa0631130:CDS
TAGCTGCCACCAGATGGTAT+TGG 0.469636 4_3:-13780241 None:intergenic
TCAGTATAATTAAATTCAAA+TGG 0.470555 4_3:-13782670 None:intergenic
CTTGATAAACCTTTGGGAAG+GGG 0.471972 4_3:-13780384 None:intergenic
GCCGTCAATGGAACCTTACC+AGG 0.472419 4_3:+13778692 Msa0631130:CDS
AGTTGTTGATTCTTATTACA+TGG 0.475969 4_3:+13781720 Msa0631130:CDS
GGATTAACAAAGTTAAACTT+TGG 0.476313 4_3:-13782904 None:intergenic
GAAATGGTGTTACGCATTTG+AGG 0.480620 4_3:-13782925 None:intergenic
GGATCAACATTGCCCAATGA+AGG 0.480947 4_3:-13782694 None:intergenic
TGAGAGAAATGCAACAGATA+CGG 0.485761 4_3:+13780817 Msa0631130:CDS
ATTAATTGTTGGTCCTGGTA+AGG 0.491356 4_3:-13778705 None:intergenic
CGAGCATTAATTGTTGGTCC+TGG 0.493195 4_3:-13778710 None:intergenic
GAGAGAAATGCAACAGATAC+GGG 0.494209 4_3:+13780818 Msa0631130:CDS
TCAGCGATTGTGCCGTCCAC+AGG 0.494835 4_3:+13778661 Msa0631130:CDS
GGGTAGAGGTTTCTCAATGT+TGG 0.495591 4_3:+13782591 Msa0631130:CDS
CAATTTGATAAATGTTTACA+GGG 0.497563 4_3:-13783396 None:intergenic
GGAAGATTAGCTGGTGGAGG+AGG 0.498166 4_3:-13783193 None:intergenic
CAAGAAGTCCCCATATTGCT+TGG 0.500129 4_3:+13780403 Msa0631130:CDS
AGAACGTCAACGGTTTGGCC+AGG 0.501113 4_3:-13781682 None:intergenic
AAAAGATTCATTGTTCATGT+TGG 0.502901 4_3:-13782557 None:intergenic
TAGTTTCACAGTTGTAGCTA+TGG 0.504059 4_3:+13781612 Msa0631130:CDS
TGTGAGCTGTTGGTGTATCA+TGG 0.504650 4_3:-13781861 None:intergenic
GCAACACAACGACCTGGTCC+TGG 0.509215 4_3:-13782514 None:intergenic
ATTTGCTTCTGCTGCTATCG+TGG 0.515893 4_3:+13777887 Msa0631130:CDS
CAACACTTAGGAAGATTAGC+TGG 0.518544 4_3:-13783202 None:intergenic
TTCTTGATAAACCTTTGGGA+AGG 0.519043 4_3:-13780386 None:intergenic
TTTGGAAACACATTTGCCAT+GGG 0.519871 4_3:+13783117 Msa0631130:CDS
CAATGAAGAGTAAGATTGTA+GGG 0.523403 4_3:-13778773 None:intergenic
AGATTTCAAGCAAATAATCC+AGG 0.524094 4_3:+13782976 Msa0631130:CDS
ATTAAATTGCAGGGGAGTGG+TGG 0.524387 4_3:+13780774 Msa0631130:intron
ACCCAATGCCCAATACCATC+TGG 0.526254 4_3:+13780232 Msa0631130:CDS
TAGTCGTGGCTTAATGATAA+GGG 0.527616 4_3:-13780350 None:intergenic
ATTTGGAAACACATTTGCCA+TGG 0.528271 4_3:+13783116 Msa0631130:CDS
GCAAATGCAAGTGGCTCAGA+AGG 0.530848 4_3:-13782715 None:intergenic
CTTATCATTAAGCCACGACT+AGG 0.535485 4_3:+13780352 Msa0631130:CDS
TCTTGATAAACCTTTGGGAA+GGG 0.536055 4_3:-13780385 None:intergenic
ACCAACAATTAATGCTCGAG+AGG 0.542459 4_3:+13778715 Msa0631130:CDS
CCATACCGTTCTTCAAGTGT+TGG 0.544154 4_3:+13781751 Msa0631130:CDS
ATAATTAAATTGCAGGGGAG+TGG 0.546443 4_3:+13780771 Msa0631130:intron
TCCAGTTAGGTTAAATTGGT+AGG 0.550019 4_3:-13780266 None:intergenic
GTTTAACAACTGGTCCACAT+TGG 0.554162 4_3:+13782419 Msa0631130:CDS
GTTGATGCATTTGACTCCGC+TGG 0.558250 4_3:-13780848 None:intergenic
CTAGAGCAATGCATCAATCC+AGG 0.561417 4_3:+13782496 Msa0631130:CDS
GATGCATTTGACTCCGCTGG+TGG 0.562919 4_3:-13780845 None:intergenic
GACAAGAGGGTACACTTTGG+TGG 0.569591 4_3:+13780287 Msa0631130:CDS
ATTTAACCTAACTGGACAAG+AGG 0.571063 4_3:+13780273 Msa0631130:CDS
CAATGCATCAATCCAGGACC+AGG 0.571950 4_3:+13782502 Msa0631130:CDS
AAATAATGTACTCAACACTT+AGG 0.572543 4_3:-13783214 None:intergenic
CGTGGAACTGGAACCCAATG+TGG 0.578205 4_3:-13782433 None:intergenic
GTATAATTAAATTCAAATGG+TGG 0.578940 4_3:-13782667 None:intergenic
ACCATTTCTGTGCCAGTGGG+AGG 0.579775 4_3:+13782940 Msa0631130:CDS
ACACTATAACACTGACGTTG+TGG 0.581153 4_3:+13781651 Msa0631130:CDS
TTAGGAAGATTAGCTGGTGG+AGG 0.587146 4_3:-13783196 None:intergenic
ATAACAGCCCATCCTCCCAC+TGG 0.590871 4_3:-13782952 None:intergenic
CTGGACAAGAGGGTACACTT+TGG 0.595930 4_3:+13780284 Msa0631130:CDS
TGTAATAAGAATCAACAACT+TGG 0.597362 4_3:-13781717 None:intergenic
ATGTGTTCATCTACTTTACG+TGG 0.597501 4_3:-13782451 None:intergenic
TACAAGCTCAAAGTGAAGCA+AGG 0.600031 4_3:+13781520 Msa0631130:CDS
GTGTAAAACTTGTGAGCTGT+TGG 0.601475 4_3:-13781871 None:intergenic
ATGCATTTGACTCCGCTGGT+GGG 0.601923 4_3:-13780844 None:intergenic
TAACACCATTTCTGTGCCAG+TGG 0.602566 4_3:+13782936 Msa0631130:CDS
GATTTAGGTGCAAATGCAAG+TGG 0.605444 4_3:-13782724 None:intergenic
ATAAACAACAACTCCTCTAG+TGG 0.606065 4_3:-13781788 None:intergenic
TAGGTATAGCTGCCACCAGA+TGG 0.606138 4_3:-13780247 None:intergenic
CCAACACTTGAAGAACGGTA+TGG 0.608437 4_3:-13781751 None:intergenic
TGGAAACACATTTGCCATGG+GGG 0.616280 4_3:+13783119 Msa0631130:CDS
ATTGAGAAACCTCTACCCCT+AGG 0.617029 4_3:-13782586 None:intergenic
GATCAACATTGCCCAATGAA+GGG 0.618418 4_3:-13782693 None:intergenic
TGGTTCCAACACTTGAAGAA+CGG 0.619947 4_3:-13781756 None:intergenic
GGCACTGTGGTTCCAAGAGT+AGG 0.621516 4_3:-13783172 None:intergenic
ACCACTAACATAACCACTAG+AGG 0.625523 4_3:+13781775 Msa0631130:CDS
TTTAACCTAACTGGACAAGA+GGG 0.625977 4_3:+13780274 Msa0631130:CDS
TCGCTCATACCCCTTCCCAA+AGG 0.634666 4_3:+13780375 Msa0631130:CDS
ACAAAATACAGCTATTCTTG+GGG 0.644652 4_3:+13782795 Msa0631130:CDS
AAACAATACCAAGCAATATG+GGG 0.644866 4_3:-13780411 None:intergenic
CGGCAGTGATAACCTGTGGA+CGG 0.647467 4_3:-13778673 None:intergenic
AACACCATTTCTGTGCCAGT+GGG 0.650163 4_3:+13782937 Msa0631130:CDS
GGGTATGAGCGACCTAGTCG+TGG 0.653043 4_3:-13780364 None:intergenic
CACTTAGGAAGATTAGCTGG+TGG 0.654885 4_3:-13783199 None:intergenic
TTGGAAACACATTTGCCATG+GGG 0.657824 4_3:+13783118 Msa0631130:CDS
TTTAGTGCAACACAACGACC+TGG 0.665798 4_3:-13782520 None:intergenic
TTGACGGCAGTGATAACCTG+TGG 0.667579 4_3:-13778677 None:intergenic
CCAACAATTAATGCTCGAGA+GGG 0.669858 4_3:+13778716 Msa0631130:CDS
CAATGCCCAATACCATCTGG+TGG 0.674666 4_3:+13780235 Msa0631130:CDS
GCTTAATGATAAGGGCACCA+TGG 0.676516 4_3:-13780342 None:intergenic
AGCTGGTGGAGGAGGCACTG+TGG 0.688484 4_3:-13783185 None:intergenic
TATTCTGGACCATCTGACCA+AGG 0.704441 4_3:-13780205 None:intergenic
AGATACGGGTAACCCACCAG+CGG 0.756602 4_3:+13780832 Msa0631130:CDS
CACCATGGACAGTAGCACGT+AGG 0.762654 4_3:-13780327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr4_3:13779792-13779811 Msa0631130:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr4_3:13779792-13779811 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr4_3:13779793-13779812 None:intergenic 0.0%
!!! AAAAGTTTTAAGTAAAATAA+AGG - chr4_3:13778006-13778025 None:intergenic 10.0%
!!! AATTAATTTTATCATAAAAG+AGG + chr4_3:13779521-13779540 Msa0631130:intron 10.0%
!!! ATTAATTTTATCATAAAAGA+GGG + chr4_3:13779522-13779541 Msa0631130:intron 10.0%
!! ATATATAATAAGATAAACAA+AGG + chr4_3:13779736-13779755 Msa0631130:intron 10.0%
!!! CTATTTTTTTTTTATTGAAA+GGG - chr4_3:13780084-13780103 None:intergenic 10.0%
!!! ACTATTTTTTTTTTATTGAA+AGG - chr4_3:13780085-13780104 None:intergenic 10.0%
!!! TTTTAAATGTAATTCTAATT+TGG + chr4_3:13780137-13780156 Msa0631130:intron 10.0%
!! AAATATGAATTCTTATAATT+AGG - chr4_3:13780473-13780492 None:intergenic 10.0%
!!! AATTGTTTAGAATAATTTTT+TGG - chr4_3:13780737-13780756 None:intergenic 10.0%
!! TTCAATTAATTAACAAATTT+GGG + chr4_3:13780922-13780941 Msa0631130:intron 10.0%
!! ATAAAAAAAGAAAAAAAAGA+AGG - chr4_3:13781136-13781155 None:intergenic 10.0%
!!! ATTTAATTTATATGCAATTT+TGG + chr4_3:13781984-13782003 Msa0631130:intron 10.0%
!! TAAATTTCCATATATTCTAA+AGG - chr4_3:13777967-13777986 None:intergenic 15.0%
!! TATAACTAGATTGAAATAAA+AGG + chr4_3:13778216-13778235 Msa0631130:intron 15.0%
!! TGTTACTAAACTTTATAATA+TGG + chr4_3:13778574-13778593 Msa0631130:intron 15.0%
!!! TTAATTTTATTTTGATATCC+AGG + chr4_3:13778622-13778641 Msa0631130:intron 15.0%
!!! TTCTCTAATATTTTTATTGA+GGG - chr4_3:13778819-13778838 None:intergenic 15.0%
!!! TTTCTCTAATATTTTTATTG+AGG - chr4_3:13778820-13778839 None:intergenic 15.0%
!!! TTACATGATCATTATTTTAA+CGG + chr4_3:13778979-13778998 Msa0631130:intron 15.0%
!!! TAATTTTTTACAGTTGTTTT+TGG - chr4_3:13779291-13779310 None:intergenic 15.0%
!! AAAGAGAATATTCTTAAAAT+AGG - chr4_3:13779389-13779408 None:intergenic 15.0%
!!! GTTTTCTATGTTTATATTAA+AGG - chr4_3:13779500-13779519 None:intergenic 15.0%
!!! TTATTTTTCTCATATGTATA+GGG + chr4_3:13780106-13780125 Msa0631130:intron 15.0%
!! ATATATCATAATTAAATTGC+AGG + chr4_3:13780764-13780783 Msa0631130:intron 15.0%
!! TATATCATAATTAAATTGCA+GGG + chr4_3:13780765-13780784 Msa0631130:intron 15.0%
!! CTTCAATTAATTAACAAATT+TGG + chr4_3:13780921-13780940 Msa0631130:intron 15.0%
!! TCATATCTTAAAATATAGTT+TGG - chr4_3:13781365-13781384 None:intergenic 15.0%
!! TGTGTATATATTATTAACTT+TGG + chr4_3:13781954-13781973 Msa0631130:intron 15.0%
!!! AATGTGTATATCTTTTTTTT+AGG + chr4_3:13782348-13782367 Msa0631130:intron 15.0%
!!! GAAATTTTGTATATATATAC+AGG + chr4_3:13782397-13782416 Msa0631130:intron 15.0%
!! TCAGTATAATTAAATTCAAA+TGG - chr4_3:13782673-13782692 None:intergenic 15.0%
!! AATTAACTCAAGAATTTATA+AGG - chr4_3:13783249-13783268 None:intergenic 15.0%
!! AACATAAAATGTGTCATATT+TGG - chr4_3:13777828-13777847 None:intergenic 20.0%
!!! ATTTCTTCCTTTAGAATATA+TGG + chr4_3:13777957-13777976 Msa0631130:intron 20.0%
!! CTAGTTATAAAGATTTACTA+TGG - chr4_3:13778205-13778224 None:intergenic 20.0%
!! AAGAAAAGATTAAAACAAGT+TGG - chr4_3:13778451-13778470 None:intergenic 20.0%
!!! TAATATTTTTATTGAGGGTA+AGG - chr4_3:13778814-13778833 None:intergenic 20.0%
!! GAAATAAATTAAACAAACCA+TGG + chr4_3:13778836-13778855 Msa0631130:intron 20.0%
!!! TAATTTTTGAATTCAAACCA+TGG - chr4_3:13778856-13778875 None:intergenic 20.0%
!!! ATCAATTTTTTGACGAATTA+TGG - chr4_3:13779707-13779726 None:intergenic 20.0%
!! ATACTATTGTTAAAATGAGA+TGG - chr4_3:13780052-13780071 None:intergenic 20.0%
!!! GTTATTTTTCTCATATGTAT+AGG + chr4_3:13780105-13780124 Msa0631130:intron 20.0%
!!! GTTTTTTCACATTACATATT+TGG + chr4_3:13780430-13780449 Msa0631130:intron 20.0%
!!! TAAGAATTCATATTTTTCTG+TGG + chr4_3:13780478-13780497 Msa0631130:intron 20.0%
!! ATATCATAATTAAATTGCAG+GGG + chr4_3:13780766-13780785 Msa0631130:intron 20.0%
!!! TCTATTTTAGTAGATGAAAT+TGG + chr4_3:13780961-13780980 Msa0631130:intron 20.0%
!! TAAGAAATTTGGATAAAGAT+TGG - chr4_3:13781033-13781052 None:intergenic 20.0%
!! CATGTAAAAGTTAAGAAATT+TGG - chr4_3:13781044-13781063 None:intergenic 20.0%
!!! CTTTCTTTTACAATAAACTT+AGG + chr4_3:13781076-13781095 Msa0631130:intron 20.0%
!! TTCTCAAATTCAATTATCTT+TGG - chr4_3:13781303-13781322 None:intergenic 20.0%
!!! TCATGATTGTTTTAACATTT+TGG + chr4_3:13781475-13781494 Msa0631130:intron 20.0%
!! TTACAGGTATGATATAAATA+GGG + chr4_3:13781899-13781918 Msa0631130:intron 20.0%
!! CACCTAATTATTATCAAATT+CGG + chr4_3:13782038-13782057 Msa0631130:intron 20.0%
!!! ATCCGAATTTGATAATAATT+AGG - chr4_3:13782043-13782062 None:intergenic 20.0%
!! GTATAATTAAATTCAAATGG+TGG - chr4_3:13782670-13782689 None:intergenic 20.0%
!! TTAAAACCATGAATATGAAT+AGG - chr4_3:13782832-13782851 None:intergenic 20.0%
!!! ATTGACAAAAAGTGTAATAA+AGG + chr4_3:13783327-13783346 Msa0631130:three_prime_UTR 20.0%
!! CAATTTGATAAATGTTTACA+GGG - chr4_3:13783399-13783418 None:intergenic 20.0%
!! TCAATTTGATAAATGTTTAC+AGG - chr4_3:13783400-13783419 None:intergenic 20.0%
!! ATTTTATGTTTTCTCTAGCA+TGG + chr4_3:13777838-13777857 Msa0631130:CDS 25.0%
! TACTTTCAATGTATTGTTGA+TGG + chr4_3:13777914-13777933 Msa0631130:intron 25.0%
! ACTTTCAATGTATTGTTGAT+GGG + chr4_3:13777915-13777934 Msa0631130:intron 25.0%
! ATAAAGGAAGAAAGCTATAT+AGG - chr4_3:13777990-13778009 None:intergenic 25.0%
! TATGATCCACTTGAAAAAAT+AGG + chr4_3:13778098-13778117 Msa0631130:intron 25.0%
! ATGATCCACTTGAAAAAATA+GGG + chr4_3:13778099-13778118 Msa0631130:intron 25.0%
!! CAATCTATTTTCTTTTGCAA+AGG - chr4_3:13778376-13778395 None:intergenic 25.0%
! TCTAAAAAAGCTCAAACTTA+AGG - chr4_3:13778534-13778553 None:intergenic 25.0%
! AAATACAAGAAACGTTTAAC+AGG - chr4_3:13778901-13778920 None:intergenic 25.0%
!!! TTTCTTTTCCATTTTTTCAG+AGG + chr4_3:13779164-13779183 Msa0631130:intron 25.0%
! TTTAAAAACATATGAGACTC+CGG + chr4_3:13779597-13779616 Msa0631130:intron 25.0%
! AAGTTAATGAATACACCTTA+AGG - chr4_3:13779900-13779919 None:intergenic 25.0%
! GGTTACATTATAAAATATGC+AGG + chr4_3:13780158-13780177 Msa0631130:intron 25.0%
!!! TCATTCAATTTTTAACTCCT+TGG + chr4_3:13780188-13780207 Msa0631130:CDS 25.0%
! AAAACAATACCAAGCAATAT+GGG - chr4_3:13780415-13780434 None:intergenic 25.0%
! AAAAACAATACCAAGCAATA+TGG - chr4_3:13780416-13780435 None:intergenic 25.0%
! CTATCAAACGTCAATAAATA+TGG + chr4_3:13780643-13780662 Msa0631130:intron 25.0%
! AGAAATGAATTCAAATGTCA+TGG - chr4_3:13780683-13780702 None:intergenic 25.0%
! TCAAATGCATCAACAATTAA+TGG + chr4_3:13780857-13780876 Msa0631130:CDS 25.0%
! AAATTCAATTATCTTTGGTG+AGG - chr4_3:13781298-13781317 None:intergenic 25.0%
! ATTGAATTTGAGAACTTGAA+CGG + chr4_3:13781309-13781328 Msa0631130:intron 25.0%
! AAAACAATCATGAGTCATAT+GGG - chr4_3:13781468-13781487 None:intergenic 25.0%
! TAAAACAATCATGAGTCATA+TGG - chr4_3:13781469-13781488 None:intergenic 25.0%
! TGTAATAAGAATCAACAACT+TGG - chr4_3:13781720-13781739 None:intergenic 25.0%
!!! AGTTGTTGATTCTTATTACA+TGG + chr4_3:13781720-13781739 Msa0631130:CDS 25.0%
! TTATATCATACCTGTAACAT+TGG - chr4_3:13781896-13781915 None:intergenic 25.0%
! GTTACAGGTATGATATAAAT+AGG + chr4_3:13781898-13781917 Msa0631130:intron 25.0%
!!! ATTTTGGCGTAAATTAACTT+TGG + chr4_3:13782000-13782019 Msa0631130:intron 25.0%
! CATTTACTAATTGCAAGATT+CGG + chr4_3:13782069-13782088 Msa0631130:intron 25.0%
! TCTGATGATCATAAATATAC+TGG + chr4_3:13782161-13782180 Msa0631130:intron 25.0%
! ATATATACAGGTTTAACAAC+TGG + chr4_3:13782409-13782428 Msa0631130:intron 25.0%
!! ATGTTCATAACTTTTGGTAT+TGG + chr4_3:13782472-13782491 Msa0631130:CDS 25.0%
! AAAAGATTCATTGTTCATGT+TGG - chr4_3:13782560-13782579 None:intergenic 25.0%
!! GCATTTTACAACAATATTAG+TGG + chr4_3:13782616-13782635 Msa0631130:CDS 25.0%
! AATCATCCTATTCATATTCA+TGG + chr4_3:13782823-13782842 Msa0631130:CDS 25.0%
!!! TGGTTTTAACTTTCATGTTT+TGG + chr4_3:13782843-13782862 Msa0631130:CDS 25.0%
! GGATTAACAAAGTTAAACTT+TGG - chr4_3:13782907-13782926 None:intergenic 25.0%
! TTCTACTTTAAACATTATGC+AGG + chr4_3:13783073-13783092 Msa0631130:intron 25.0%
! TTAAACATTATGCAGGTATT+TGG + chr4_3:13783080-13783099 Msa0631130:intron 25.0%
! AAATAATGTACTCAACACTT+AGG - chr4_3:13783217-13783236 None:intergenic 25.0%
AGAAATGAGAGATGTAGAAA+AGG - chr4_3:13777943-13777962 None:intergenic 30.0%
TGTATAGTCCTTATGTAAGA+AGG + chr4_3:13778045-13778064 Msa0631130:intron 30.0%
!!! GTTTTCCCTATTTTTTCAAG+TGG - chr4_3:13778107-13778126 None:intergenic 30.0%
AAAGCTCAAACTTAAGGTAA+TGG - chr4_3:13778528-13778547 None:intergenic 30.0%
CAATGAAGAGTAAGATTGTA+GGG - chr4_3:13778776-13778795 None:intergenic 30.0%
TCAACATTATACTACATGCA+TGG - chr4_3:13778943-13778962 None:intergenic 30.0%
! AGCAATATCTTCTTGTTTCT+AGG - chr4_3:13779105-13779124 None:intergenic 30.0%
TCATAAAAGAGGGTGAAATT+TGG + chr4_3:13779532-13779551 Msa0631130:intron 30.0%
TTAAAAACATATGAGACTCC+GGG + chr4_3:13779598-13779617 Msa0631130:intron 30.0%
! GCTAAATTTTCTTTCTTTCC+CGG - chr4_3:13779619-13779638 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG - chr4_3:13779859-13779878 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG + chr4_3:13779882-13779901 Msa0631130:intron 30.0%
CATTATAAAATATGCAGGCA+TGG + chr4_3:13780163-13780182 Msa0631130:intron 30.0%
AAACAATACCAAGCAATATG+GGG - chr4_3:13780414-13780433 None:intergenic 30.0%
TCAACAATTAATGGCTTATC+TGG + chr4_3:13780866-13780885 Msa0631130:CDS 30.0%
AATTGAAGACTTACGATCTT+GGG - chr4_3:13780909-13780928 None:intergenic 30.0%
TAATTGAAGACTTACGATCT+TGG - chr4_3:13780910-13780929 None:intergenic 30.0%
TCTCCACTTATTCACTTAAA+GGG - chr4_3:13781188-13781207 None:intergenic 30.0%
TTCTCCACTTATTCACTTAA+AGG - chr4_3:13781189-13781208 None:intergenic 30.0%
AAGTGAATAAGTGGAGAATA+AGG + chr4_3:13781191-13781210 Msa0631130:intron 30.0%
AGTGAATAAGTGGAGAATAA+GGG + chr4_3:13781192-13781211 Msa0631130:intron 30.0%
! TTTTTCATTGCAGTATGAAG+AGG - chr4_3:13781229-13781248 None:intergenic 30.0%
!! ATTGATAATGCGTAGTAAGT+AGG - chr4_3:13781551-13781570 None:intergenic 30.0%
!! CATTATAGGTGCTTTTGTTT+GGG - chr4_3:13781824-13781843 None:intergenic 30.0%
! AAGTTTTACACCAATGTTAC+AGG + chr4_3:13781883-13781902 Msa0631130:CDS 30.0%
TGATATAAATAGGGTTTCAC+TGG + chr4_3:13781908-13781927 Msa0631130:intron 30.0%
! GAACACATGTTCATAACTTT+TGG + chr4_3:13782466-13782485 Msa0631130:CDS 30.0%
! ATGAATCTTTTGTTCTTCCT+AGG + chr4_3:13782569-13782588 Msa0631130:CDS 30.0%
! TGAATCTTTTGTTCTTCCTA+GGG + chr4_3:13782570-13782589 Msa0631130:CDS 30.0%
AATTCAAATGGTGGTTGATT+TGG - chr4_3:13782661-13782680 None:intergenic 30.0%
TAATTATACTGACCCTTCAT+TGG + chr4_3:13782681-13782700 Msa0631130:CDS 30.0%
AATTATACTGACCCTTCATT+GGG + chr4_3:13782682-13782701 Msa0631130:CDS 30.0%
ATTTGCACCTAAATCAACTA+AGG + chr4_3:13782732-13782751 Msa0631130:CDS 30.0%
AGATTTCAAGCAAATAATCC+AGG + chr4_3:13782976-13782995 Msa0631130:CDS 30.0%
ACATCTAAATAAAACCAACC+TGG - chr4_3:13782997-13783016 None:intergenic 30.0%
! GAAAGAATAGGCAAACATTT+TGG - chr4_3:13783353-13783372 None:intergenic 30.0%
CACTATGATGTTGAAAGAAT+AGG - chr4_3:13783365-13783384 None:intergenic 30.0%
GAAGCTAATAGAAGAGCAAA+AGG - chr4_3:13777864-13777883 None:intergenic 35.0%
ACACTACACCTTCTTACATA+AGG - chr4_3:13778056-13778075 None:intergenic 35.0%
ATTAATTGTTGGTCCTGGTA+AGG - chr4_3:13778708-13778727 None:intergenic 35.0%
CCAATGAAGAGTAAGATTGT+AGG - chr4_3:13778777-13778796 None:intergenic 35.0%
CCTACAATCTTACTCTTCAT+TGG + chr4_3:13778774-13778793 Msa0631130:CDS 35.0%
TACAAGAAACGTTTAACAGG+AGG - chr4_3:13778898-13778917 None:intergenic 35.0%
! AGCAAGATCCTCTGAAAAAA+TGG - chr4_3:13779175-13779194 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG + chr4_3:13779855-13779874 Msa0631130:intron 35.0%
CACCTTCTAACAAAAACAAG+TGG - chr4_3:13779860-13779879 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr4_3:13779942-13779961 Msa0631130:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr4_3:13779948-13779967 None:intergenic 35.0%
!! TTTTTAACTCCTTGGTCAGA+TGG + chr4_3:13780196-13780215 Msa0631130:CDS 35.0%
ACCTACCAATTTAACCTAAC+TGG + chr4_3:13780265-13780284 Msa0631130:CDS 35.0%
TCCAGTTAGGTTAAATTGGT+AGG - chr4_3:13780269-13780288 None:intergenic 35.0%
CTTGTCCAGTTAGGTTAAAT+TGG - chr4_3:13780273-13780292 None:intergenic 35.0%
ATTTAACCTAACTGGACAAG+AGG + chr4_3:13780273-13780292 Msa0631130:CDS 35.0%
TTTAACCTAACTGGACAAGA+GGG + chr4_3:13780274-13780293 Msa0631130:CDS 35.0%
TAGTCGTGGCTTAATGATAA+GGG - chr4_3:13780353-13780372 None:intergenic 35.0%
! TCTTGATAAACCTTTGGGAA+GGG - chr4_3:13780388-13780407 None:intergenic 35.0%
! TTCTTGATAAACCTTTGGGA+AGG - chr4_3:13780389-13780408 None:intergenic 35.0%
GGACTTCTTGATAAACCTTT+GGG - chr4_3:13780393-13780412 None:intergenic 35.0%
ATAATTAAATTGCAGGGGAG+TGG + chr4_3:13780771-13780790 Msa0631130:intron 35.0%
TGAGAGAAATGCAACAGATA+CGG + chr4_3:13780817-13780836 Msa0631130:CDS 35.0%
TTCCCCTTTAAGTGAATAAG+TGG + chr4_3:13781182-13781201 Msa0631130:intron 35.0%
CTCCACTTATTCACTTAAAG+GGG - chr4_3:13781187-13781206 None:intergenic 35.0%
TTCAATTATCTTTGGTGAGG+AGG - chr4_3:13781295-13781314 None:intergenic 35.0%
TAGCTACAACTGTGAAACTA+TGG - chr4_3:13781612-13781631 None:intergenic 35.0%
TAGTTTCACAGTTGTAGCTA+TGG + chr4_3:13781612-13781631 Msa0631130:CDS 35.0%
!! AGTTTTCAAGAGAACGTCAA+CGG - chr4_3:13781695-13781714 None:intergenic 35.0%
ATAAACAACAACTCCTCTAG+TGG - chr4_3:13781791-13781810 None:intergenic 35.0%
!! AGAGGAGTTGTTGTTTATGA+TGG + chr4_3:13781793-13781812 Msa0631130:CDS 35.0%
! GCATTATAGGTGCTTTTGTT+TGG - chr4_3:13781825-13781844 None:intergenic 35.0%
TCAGGCATAATTGGCATTAT+AGG - chr4_3:13781838-13781857 None:intergenic 35.0%
TCATGGTTATCAGGCATAAT+TGG - chr4_3:13781847-13781866 None:intergenic 35.0%
TTTAACAACTGGTCCACATT+GGG + chr4_3:13782420-13782439 Msa0631130:CDS 35.0%
ATGTGTTCATCTACTTTACG+TGG - chr4_3:13782454-13782473 None:intergenic 35.0%
! GAATCTTTTGTTCTTCCTAG+GGG + chr4_3:13782571-13782590 Msa0631130:CDS 35.0%
! GTCTTCACCTTAGTTGATTT+AGG - chr4_3:13782742-13782761 None:intergenic 35.0%
!!! AACTTTCATGTTTTGGCACA+AGG + chr4_3:13782850-13782869 Msa0631130:CDS 35.0%
!!! ATGTTTTGGCACAAGGTTTT+GGG + chr4_3:13782857-13782876 Msa0631130:CDS 35.0%
TTCAAGCAAATAATCCAGGT+TGG + chr4_3:13782980-13782999 Msa0631130:intron 35.0%
!! TTGGCTTGTACATTGTCATT+TGG + chr4_3:13783099-13783118 Msa0631130:CDS 35.0%
ATTTGGAAACACATTTGCCA+TGG + chr4_3:13783116-13783135 Msa0631130:CDS 35.0%
TTTGGAAACACATTTGCCAT+GGG + chr4_3:13783117-13783136 Msa0631130:CDS 35.0%
GAATAGTGAAGTCTTCAACC+TGG - chr4_3:13778643-13778662 None:intergenic 40.0%
ACCAACAATTAATGCTCGAG+AGG + chr4_3:13778715-13778734 Msa0631130:CDS 40.0%
CCAACAATTAATGCTCGAGA+GGG + chr4_3:13778716-13778735 Msa0631130:CDS 40.0%
TCTTGCTAACGAGTGTTCTA+AGG + chr4_3:13779188-13779207 Msa0631130:intron 40.0%
TCTGATAGTTGATCGACCAT+CGG + chr4_3:13779349-13779368 Msa0631130:intron 40.0%
GGAGAAAGAATTAAGACCGA+TGG - chr4_3:13779368-13779387 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr4_3:13779941-13779960 Msa0631130:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr4_3:13779949-13779968 None:intergenic 40.0%
CTAGTCGTGGCTTAATGATA+AGG - chr4_3:13780354-13780373 None:intergenic 40.0%
CTTATCATTAAGCCACGACT+AGG + chr4_3:13780352-13780371 Msa0631130:CDS 40.0%
! CTTGATAAACCTTTGGGAAG+GGG - chr4_3:13780387-13780406 None:intergenic 40.0%
GGGACTTCTTGATAAACCTT+TGG - chr4_3:13780394-13780413 None:intergenic 40.0%
TTGCATGCATTCACGCAATT+AGG + chr4_3:13780508-13780527 Msa0631130:intron 40.0%
GAGAGAAATGCAACAGATAC+GGG + chr4_3:13780818-13780837 Msa0631130:CDS 40.0%
TCATTGCAGTATGAAGAGGT+TGG - chr4_3:13781225-13781244 None:intergenic 40.0%
ATTATCTTTGGTGAGGAGGT+TGG - chr4_3:13781291-13781310 None:intergenic 40.0%
TACAAGCTCAAAGTGAAGCA+AGG + chr4_3:13781520-13781539 Msa0631130:CDS 40.0%
ACACTATAACACTGACGTTG+TGG + chr4_3:13781651-13781670 Msa0631130:CDS 40.0%
TGGTTCCAACACTTGAAGAA+CGG - chr4_3:13781759-13781778 None:intergenic 40.0%
ACCACTAACATAACCACTAG+AGG + chr4_3:13781775-13781794 Msa0631130:CDS 40.0%
TCCTCTAGTGGTTATGTTAG+TGG - chr4_3:13781779-13781798 None:intergenic 40.0%
!! TATAGGTGCTTTTGTTTGGG+AGG - chr4_3:13781821-13781840 None:intergenic 40.0%
GTTGGTGTATCATGGTTATC+AGG - chr4_3:13781856-13781875 None:intergenic 40.0%
GTGTAAAACTTGTGAGCTGT+TGG - chr4_3:13781874-13781893 None:intergenic 40.0%
TGCGTGTGTGTCTTTATTCA+TGG - chr4_3:13782198-13782217 None:intergenic 40.0%
GTTTAACAACTGGTCCACAT+TGG + chr4_3:13782419-13782438 Msa0631130:CDS 40.0%
TCATCTACTTTACGTGGAAC+TGG - chr4_3:13782448-13782467 None:intergenic 40.0%
GATCAACATTGCCCAATGAA+GGG - chr4_3:13782696-13782715 None:intergenic 40.0%
GATTTAGGTGCAAATGCAAG+TGG - chr4_3:13782727-13782746 None:intergenic 40.0%
!!! CATGTTTTGGCACAAGGTTT+TGG + chr4_3:13782856-13782875 Msa0631130:CDS 40.0%
!! GAAATGGTGTTACGCATTTG+AGG - chr4_3:13782928-13782947 None:intergenic 40.0%
TTGGAAACACATTTGCCATG+GGG + chr4_3:13783118-13783137 Msa0631130:CDS 40.0%
!!! ATGGCTTTTGAGGTTGAGAA+TGG + chr4_3:13783148-13783167 Msa0631130:CDS 40.0%
!!! TGGCTTTTGAGGTTGAGAAT+GGG + chr4_3:13783149-13783168 Msa0631130:CDS 40.0%
CAACACTTAGGAAGATTAGC+TGG - chr4_3:13783205-13783224 None:intergenic 40.0%
ATTTGCTTCTGCTGCTATCG+TGG + chr4_3:13777887-13777906 Msa0631130:CDS 45.0%
TCCTGGTAAGGTTCCATTGA+CGG - chr4_3:13778696-13778715 None:intergenic 45.0%
CGAGCATTAATTGTTGGTCC+TGG - chr4_3:13778713-13778732 None:intergenic 45.0%
CCCTCTCGAGCATTAATTGT+TGG - chr4_3:13778719-13778738 None:intergenic 45.0%
TATTCTGGACCATCTGACCA+AGG - chr4_3:13780208-13780227 None:intergenic 45.0%
!! GGGCATTGGGTTACATATTC+TGG - chr4_3:13780223-13780242 None:intergenic 45.0%
! ACCAGATGGTATTGGGCATT+GGG - chr4_3:13780236-13780255 None:intergenic 45.0%
!! GCTTAATGATAAGGGCACCA+TGG - chr4_3:13780345-13780364 None:intergenic 45.0%
CAAGAAGTCCCCATATTGCT+TGG + chr4_3:13780403-13780422 Msa0631130:CDS 45.0%
ATTAAATTGCAGGGGAGTGG+TGG + chr4_3:13780774-13780793 Msa0631130:intron 45.0%
! GCGATGTTAACTTGAGACCT+TGG - chr4_3:13781343-13781362 None:intergenic 45.0%
TCAAGAGAACGTCAACGGTT+TGG - chr4_3:13781690-13781709 None:intergenic 45.0%
CCAACACTTGAAGAACGGTA+TGG - chr4_3:13781754-13781773 None:intergenic 45.0%
CCATACCGTTCTTCAAGTGT+TGG + chr4_3:13781751-13781770 Msa0631130:CDS 45.0%
TGTGAGCTGTTGGTGTATCA+TGG - chr4_3:13781864-13781883 None:intergenic 45.0%
CTAGAGCAATGCATCAATCC+AGG + chr4_3:13782496-13782515 Msa0631130:CDS 45.0%
TTTAGTGCAACACAACGACC+TGG - chr4_3:13782523-13782542 None:intergenic 45.0%
TTTGTTCTTCCTAGGGGTAG+AGG + chr4_3:13782577-13782596 Msa0631130:CDS 45.0%
ATTGAGAAACCTCTACCCCT+AGG - chr4_3:13782589-13782608 None:intergenic 45.0%
GGGTAGAGGTTTCTCAATGT+TGG + chr4_3:13782591-13782610 Msa0631130:CDS 45.0%
GGATCAACATTGCCCAATGA+AGG - chr4_3:13782697-13782716 None:intergenic 45.0%
TAACACCATTTCTGTGCCAG+TGG + chr4_3:13782936-13782955 Msa0631130:CDS 45.0%
AACACCATTTCTGTGCCAGT+GGG + chr4_3:13782937-13782956 Msa0631130:CDS 45.0%
TGGAAACACATTTGCCATGG+GGG + chr4_3:13783119-13783138 Msa0631130:CDS 45.0%
! TTAGGAAGATTAGCTGGTGG+AGG - chr4_3:13783199-13783218 None:intergenic 45.0%
! CACTTAGGAAGATTAGCTGG+TGG - chr4_3:13783202-13783221 None:intergenic 45.0%
!! TTAATTAATAATTTATGAAT+TGG - chr4_3:13779231-13779250 None:intergenic 5.0%
!! AAACAAAATTATAAATAATA+TGG + chr4_3:13779461-13779480 Msa0631130:intron 5.0%
TTGACGGCAGTGATAACCTG+TGG - chr4_3:13778680-13778699 None:intergenic 50.0%
CAGGTTATCACTGCCGTCAA+TGG + chr4_3:13778680-13778699 Msa0631130:CDS 50.0%
ACCCAATGCCCAATACCATC+TGG + chr4_3:13780232-13780251 Msa0631130:CDS 50.0%
! CACCAGATGGTATTGGGCAT+TGG - chr4_3:13780237-13780256 None:intergenic 50.0%
CAATGCCCAATACCATCTGG+TGG + chr4_3:13780235-13780254 Msa0631130:CDS 50.0%
AGCTGCCACCAGATGGTATT+GGG - chr4_3:13780243-13780262 None:intergenic 50.0%
TAGCTGCCACCAGATGGTAT+TGG - chr4_3:13780244-13780263 None:intergenic 50.0%
TAGGTATAGCTGCCACCAGA+TGG - chr4_3:13780250-13780269 None:intergenic 50.0%
GTGTACCCTCTTGTCCAGTT+AGG - chr4_3:13780282-13780301 None:intergenic 50.0%
! CTGGACAAGAGGGTACACTT+TGG + chr4_3:13780284-13780303 Msa0631130:CDS 50.0%
! GACAAGAGGGTACACTTTGG+TGG + chr4_3:13780287-13780306 Msa0631130:CDS 50.0%
! TTCCTACGTGCTACTGTCCA+TGG + chr4_3:13780325-13780344 Msa0631130:CDS 50.0%
ATGCATTTGACTCCGCTGGT+GGG - chr4_3:13780847-13780866 None:intergenic 50.0%
GTTGATGCATTTGACTCCGC+TGG - chr4_3:13780851-13780870 None:intergenic 50.0%
CAATGCATCAATCCAGGACC+AGG + chr4_3:13782502-13782521 Msa0631130:CDS 50.0%
GCAAATGCAAGTGGCTCAGA+AGG - chr4_3:13782718-13782737 None:intergenic 50.0%
! TTTGCCATGGGGGTTAGCAA+TGG + chr4_3:13783129-13783148 Msa0631130:CDS 50.0%
AAAGCCATTGCTAACCCCCA+TGG - chr4_3:13783136-13783155 None:intergenic 50.0%
!! GGGGTTAGCAATGGCTTTTG+AGG + chr4_3:13783138-13783157 Msa0631130:CDS 50.0%
GTTGAGAATGGGCCTACTCT+TGG + chr4_3:13783160-13783179 Msa0631130:CDS 50.0%
CGGCAGTGATAACCTGTGGA+CGG - chr4_3:13778676-13778695 None:intergenic 55.0%
GCCGTCAATGGAACCTTACC+AGG + chr4_3:13778692-13778711 Msa0631130:CDS 55.0%
CACCATGGACAGTAGCACGT+AGG - chr4_3:13780330-13780349 None:intergenic 55.0%
TCGCTCATACCCCTTCCCAA+AGG + chr4_3:13780375-13780394 Msa0631130:CDS 55.0%
AGATACGGGTAACCCACCAG+CGG + chr4_3:13780832-13780851 Msa0631130:CDS 55.0%
GATGCATTTGACTCCGCTGG+TGG - chr4_3:13780848-13780867 None:intergenic 55.0%
CTTGAACGGAGCACGTTCCA+AGG + chr4_3:13781323-13781342 Msa0631130:intron 55.0%
! AGAACGTCAACGGTTTGGCC+AGG - chr4_3:13781685-13781704 None:intergenic 55.0%
CGTGGAACTGGAACCCAATG+TGG - chr4_3:13782436-13782455 None:intergenic 55.0%
ACCATTTCTGTGCCAGTGGG+AGG + chr4_3:13782940-13782959 Msa0631130:CDS 55.0%
TCCTCCCACTGGCACAGAAA+TGG - chr4_3:13782944-13782963 None:intergenic 55.0%
TTTCTGTGCCAGTGGGAGGA+TGG + chr4_3:13782944-13782963 Msa0631130:CDS 55.0%
TTCTGTGCCAGTGGGAGGAT+GGG + chr4_3:13782945-13782964 Msa0631130:CDS 55.0%
ATAACAGCCCATCCTCCCAC+TGG - chr4_3:13782955-13782974 None:intergenic 55.0%
GGCACTGTGGTTCCAAGAGT+AGG - chr4_3:13783175-13783194 None:intergenic 55.0%
! GGAAGATTAGCTGGTGGAGG+AGG - chr4_3:13783196-13783215 None:intergenic 55.0%
TCAGCGATTGTGCCGTCCAC+AGG + chr4_3:13778661-13778680 Msa0631130:CDS 60.0%
GGGTATGAGCGACCTAGTCG+TGG - chr4_3:13780367-13780386 None:intergenic 60.0%
GCAACACAACGACCTGGTCC+TGG - chr4_3:13782517-13782536 None:intergenic 60.0%
GACGTTGTGGTGCTTGCGCC+TGG + chr4_3:13781664-13781683 Msa0631130:CDS 65.0%
!! AGCTGGTGGAGGAGGCACTG+TGG - chr4_3:13783188-13783207 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 13777812 13783435 13777812 ID=Msa0631130;Name=Msa0631130
chr4_3 mRNA 13777812 13783435 13777812 ID=Msa0631130-mRNA-1;Parent=Msa0631130;Name=Msa0631130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=19|1|1|1|1|1|7|210|572
chr4_3 exon 13777812 13777923 13777812 ID=Msa0631130-mRNA-1:exon:3844;Parent=Msa0631130-mRNA-1
chr4_3 exon 13778644 13778795 13778644 ID=Msa0631130-mRNA-1:exon:3845;Parent=Msa0631130-mRNA-1
chr4_3 exon 13780180 13780424 13780180 ID=Msa0631130-mRNA-1:exon:3846;Parent=Msa0631130-mRNA-1
chr4_3 exon 13780786 13780914 13780786 ID=Msa0631130-mRNA-1:exon:3847;Parent=Msa0631130-mRNA-1
chr4_3 exon 13781515 13781904 13781515 ID=Msa0631130-mRNA-1:exon:3848;Parent=Msa0631130-mRNA-1
chr4_3 exon 13782419 13782997 13782419 ID=Msa0631130-mRNA-1:exon:3849;Parent=Msa0631130-mRNA-1
chr4_3 exon 13783095 13783435 13783095 ID=Msa0631130-mRNA-1:exon:3850;Parent=Msa0631130-mRNA-1
chr4_3 five_prime_UTR 13777812 13777830 13777812 ID=Msa0631130-mRNA-1:five_prime_utr;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13777831 13777923 13777831 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13778644 13778795 13778644 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13780180 13780424 13780180 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13780786 13780914 13780786 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13781515 13781904 13781515 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13782419 13782997 13782419 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 CDS 13783095 13783225 13783095 ID=Msa0631130-mRNA-1:cds;Parent=Msa0631130-mRNA-1
chr4_3 three_prime_UTR 13783226 13783435 13783226 ID=Msa0631130-mRNA-1:three_prime_utr;Parent=Msa0631130-mRNA-1
Gene Sequence

>Msa0631130

ATGACACATTTTATGTTTTCTCTAGCATGGCCTTTTGCTCTTCTATTAGCTTCTTCATTTGCTTCTGCTGCTATCGTGGAACATACTTTCAATGTTGAAGACTTCACTATTCAGCGATTGTGCCGTCCACAGGTTATCACTGCCGTCAATGGAACCTTACCAGGACCAACAATTAATGCTCGAGAGGGTGACACTGTTATCATTCATGCATTCAACAAATCACCCTACAATCTTACTCTTCATTGGCATGGAATCATTCAATTTTTAACTCCTTGGTCAGATGGTCCAGAATATGTAACCCAATGCCCAATACCATCTGGTGGCAGCTATACCTACCAATTTAACCTAACTGGACAAGAGGGTACACTTTGGTGGCATGCACACTCTTCTTTCCTACGTGCTACTGTCCATGGTGCCCTTATCATTAAGCCACGACTAGGTCGCTCATACCCCTTCCCAAAGGTTTATCAAGAAGTCCCCATATTGCTTGGGGAGTGGTGGAATGCTAATGTTGAAGAAGTTGAGAGAAATGCAACAGATACGGGTAACCCACCAGCGGAGTCAAATGCATCAACAATTAATGGCTTATCTGGTGACTTGTATAACTGCTCCCAAGATCAGACTTACAAGCTCAAAGTGAAGCAAGGAAAAACCTACTTACTACGCATTATCAATGCTGCACTCAATGAACAACATTTCTTCAAGATAGCAAACCATAGTTTCACAGTTGTAGCTATGGATGCTATCTACACAGAACACTATAACACTGACGTTGTGGTGCTTGCGCCTGGCCAAACCGTTGACGTTCTCTTGAAAACTAACCAAGTTGTTGATTCTTATTACATGGTTATGACACCATACCGTTCTTCAAGTGTTGGAACCACTAACATAACCACTAGAGGAGTTGTTGTTTATGATGGTGCCTCCCAAACAAAAGCACCTATAATGCCAATTATGCCTGATAACCATGATACACCAACAGCTCACAAGTTTTACACCAATGTTACAGGTTTAACAACTGGTCCACATTGGGTTCCAGTTCCACGTAAAGTAGATGAACACATGTTCATAACTTTTGGTATTGGTCTAGAGCAATGCATCAATCCAGGACCAGGTCGTTGTGTTGCACTAAACTCTCGACTTTCTGCCAACATGAACAATGAATCTTTTGTTCTTCCTAGGGGTAGAGGTTTCTCAATGTTGGAAGCATTTTACAACAATATTAGTGGTGTGTACACAAAAGATTTTCCAAATCAACCACCATTTGAATTTAATTATACTGACCCTTCATTGGGCAATGTTGATCCTTCTGAGCCACTTGCATTTGCACCTAAATCAACTAAGGTGAAGACTTTGAAGTTTAATTCAACGATTGAGATTGTGCTACAAAATACAGCTATTCTTGGGGCAGAGAATCATCCTATTCATATTCATGGTTTTAACTTTCATGTTTTGGCACAAGGTTTTGGGAATTATAATGCTACTAGAGATGAACCAAAGTTTAACTTTGTTAATCCTCAAATGCGTAACACCATTTCTGTGCCAGTGGGAGGATGGGCTGTTATTAGATTTCAAGCAAATAATCCAGGTATTTGGCTTGTACATTGTCATTTGGAAACACATTTGCCATGGGGGTTAGCAATGGCTTTTGAGGTTGAGAATGGGCCTACTCTTGGAACCACAGTGCCTCCTCCACCAGCTAATCTTCCTAAGTGTTGA
Protein sequence

>Msa0631130

MTHFMFSLAWPFALLLASSFASAAIVEHTFNVEDFTIQRLCRPQVITAVNGTLPGPTINAREGDTVIIHAFNKSPYNLTLHWHGIIQFLTPWSDGPEYVTQCPIPSGGSYTYQFNLTGQEGTLWWHAHSSFLRATVHGALIIKPRLGRSYPFPKVYQEVPILLGEWWNANVEEVERNATDTGNPPAESNASTINGLSGDLYNCSQDQTYKLKVKQGKTYLLRIINAALNEQHFFKIANHSFTVVAMDAIYTEHYNTDVVVLAPGQTVDVLLKTNQVVDSYYMVMTPYRSSSVGTTNITTRGVVVYDGASQTKAPIMPIMPDNHDTPTAHKFYTNVTGLTTGPHWVPVPRKVDEHMFITFGIGLEQCINPGPGRCVALNSRLSANMNNESFVLPRGRGFSMLEAFYNNISGVYTKDFPNQPPFEFNYTDPSLGNVDPSEPLAFAPKSTKVKTLKFNSTIEIVLQNTAILGAENHPIHIHGFNFHVLAQGFGNYNATRDEPKFNFVNPQMRNTISVPVGGWAVIRFQANNPGIWLVHCHLETHLPWGLAMAFEVENGPTLGTTVPPPPANLPKC*