Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563860 | XP_013446597.2 | 96.686 | 513 | 17 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1019 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563860 | sp|A0A1P8B760|AMI4G_ARATH | 61.777 | 484 | 172 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563860 | A0A396GPR5 | 96.686 | 513 | 17 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1019 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa0563860 | 0.805133 | 1.546311e-49 | -8.615850e-47 |
| Msa0078700 | Msa0563860 | 0.806217 | 9.159175e-50 | -8.615850e-47 |
| Msa0101960 | Msa0563860 | 0.809089 | 2.247516e-50 | -8.615850e-47 |
| Msa0135030 | Msa0563860 | 0.815219 | 1.034251e-51 | -8.615850e-47 |
| Msa0204140 | Msa0563860 | 0.809616 | 1.732829e-50 | -8.615850e-47 |
| Msa0307420 | Msa0563860 | 0.812609 | 3.889977e-51 | -8.615850e-47 |
| Msa0335080 | Msa0563860 | 0.805591 | 1.239842e-49 | -8.615850e-47 |
| Msa0355550 | Msa0563860 | 0.819083 | 1.399300e-52 | -8.615850e-47 |
| Msa0517270 | Msa0563860 | 0.811469 | 6.894486e-51 | -8.615850e-47 |
| Msa0563860 | Msa0574930 | 0.802347 | 5.857893e-49 | -8.615850e-47 |
| Msa0563860 | Msa0577490 | 0.909689 | 4.312335e-82 | -8.615850e-47 |
| Msa0563860 | Msa0619310 | 0.806899 | 6.574685e-50 | -8.615850e-47 |
| Msa0563860 | Msa0635270 | 0.816370 | 5.727510e-52 | -8.615850e-47 |
| Msa0563860 | Msa0704680 | 0.812007 | 5.264793e-51 | -8.615850e-47 |
| Msa0563860 | Msa0719600 | 0.800835 | 1.195810e-48 | -8.615850e-47 |
| Msa0563860 | Msa0870510 | 0.833670 | 4.667759e-56 | -8.615850e-47 |
| Msa0563860 | Msa0901270 | 0.815915 | 7.239053e-52 | -8.615850e-47 |
| Msa0563860 | Msa0905570 | 0.826671 | 2.386903e-54 | -8.615850e-47 |
| Msa0563860 | Msa0930270 | 0.809780 | 1.597297e-50 | -8.615850e-47 |
| Msa0563860 | Msa0966590 | 0.812594 | 3.918770e-51 | -8.615850e-47 |
| Msa0563860 | Msa1001120 | 0.803576 | 3.263436e-49 | -8.615850e-47 |
| Msa0563860 | Msa1092310 | 0.826685 | 2.369152e-54 | -8.615850e-47 |
| Msa0563860 | Msa1157670 | 0.818682 | 1.725957e-52 | -8.615850e-47 |
| Msa0563860 | Msa1159170 | 0.816499 | 5.360013e-52 | -8.615850e-47 |
| Msa0563860 | Msa1202800 | 0.803115 | 4.065701e-49 | -8.615850e-47 |
| Msa0563860 | Msa1203600 | 0.801248 | 9.847938e-49 | -8.615850e-47 |
| Msa0563860 | Msa1238600 | 0.805880 | 1.078274e-49 | -8.615850e-47 |
| Msa0563860 | Msa1255210 | 0.800383 | 1.478826e-48 | -8.615850e-47 |
| Msa0563860 | Msa1256060 | 0.819417 | 1.174344e-52 | -8.615850e-47 |
| Msa0563860 | Msa1289090 | 0.810232 | 1.277186e-50 | -8.615850e-47 |
| Msa0563860 | Msa1306830 | 0.923741 | 1.779692e-89 | -8.615850e-47 |
| Msa0563860 | Msa1315480 | 0.835977 | 1.225490e-56 | -8.615850e-47 |
| Msa0563860 | Msa1389170 | 0.813104 | 3.030097e-51 | -8.615850e-47 |
| Msa0563860 | Msa1415410 | 0.838151 | 3.410088e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563860 | MtrunA17_Chr8g0377681 | 96.686 | 513 | 17 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1019 |
| Msa0563860 | MtrunA17_Chr8g0377691 | 84.149 | 511 | 80 | 1 | 3 | 513 | 6 | 515 | 0.0 | 875 |
| Msa0563860 | MtrunA17_Chr8g0377651 | 86.503 | 489 | 65 | 1 | 25 | 513 | 28 | 515 | 0.0 | 874 |
| Msa0563860 | MtrunA17_Chr8g0377641 | 83.694 | 509 | 79 | 2 | 2 | 510 | 5 | 509 | 0.0 | 874 |
| Msa0563860 | MtrunA17_Chr8g0377701 | 84.479 | 509 | 77 | 2 | 3 | 510 | 6 | 513 | 0.0 | 868 |
| Msa0563860 | MtrunA17_Chr4g0037521 | 60.700 | 486 | 181 | 7 | 28 | 506 | 25 | 507 | 0.0 | 568 |
| Msa0563860 | MtrunA17_Chr4g0037491 | 58.361 | 305 | 114 | 6 | 202 | 497 | 1 | 301 | 3.14e-115 | 342 |
| Msa0563860 | MtrunA17_Chr8g0377661 | 92.308 | 78 | 6 | 0 | 436 | 513 | 1 | 78 | 4.17e-43 | 147 |
| Msa0563860 | MtrunA17_Chr4g0037501 | 63.830 | 94 | 32 | 2 | 102 | 193 | 2 | 95 | 2.50e-30 | 113 |
| Msa0563860 | MtrunA17_Chr8g0385461 | 31.518 | 257 | 161 | 6 | 29 | 284 | 154 | 396 | 5.01e-28 | 118 |
| Msa0563860 | MtrunA17_Chr3g0097801 | 32.770 | 296 | 174 | 6 | 15 | 306 | 34 | 308 | 6.40e-26 | 111 |
| Msa0563860 | MtrunA17_Chr2g0279961 | 28.975 | 283 | 188 | 6 | 38 | 315 | 130 | 404 | 1.85e-19 | 91.7 |
| Msa0563860 | MtrunA17_Chr3g0130801 | 25.832 | 511 | 299 | 21 | 37 | 513 | 200 | 664 | 2.50e-19 | 91.7 |
| Msa0563860 | MtrunA17_Chr8g0384851 | 25.143 | 525 | 315 | 21 | 18 | 505 | 116 | 599 | 1.14e-15 | 80.1 |
| Msa0563860 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 137 | 254 | 63 | 176 | 2.09e-13 | 72.0 |
| Msa0563860 | MtrunA17_Chr4g0050371 | 37.190 | 121 | 70 | 2 | 135 | 254 | 107 | 222 | 3.79e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563860 | AT4G34880.2 | 61.777 | 484 | 172 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Msa0563860 | AT4G34880.1 | 54.865 | 483 | 161 | 5 | 27 | 506 | 34 | 462 | 2.62e-178 | 509 |
| Msa0563860 | AT5G07360.1 | 32.400 | 250 | 158 | 5 | 30 | 278 | 197 | 436 | 1.27e-27 | 117 |
| Msa0563860 | AT5G07360.3 | 32.400 | 250 | 158 | 5 | 30 | 278 | 197 | 436 | 1.27e-27 | 117 |
| Msa0563860 | AT3G25660.1 | 27.158 | 556 | 296 | 19 | 4 | 498 | 14 | 521 | 1.58e-25 | 110 |
| Msa0563860 | AT5G07360.2 | 32.000 | 250 | 152 | 6 | 30 | 278 | 197 | 429 | 1.59e-24 | 107 |
| Msa0563860 | AT5G64440.1 | 26.637 | 443 | 271 | 15 | 91 | 508 | 186 | 599 | 3.22e-21 | 97.8 |
| Msa0563860 | AT1G08980.1 | 41.176 | 119 | 64 | 3 | 137 | 254 | 64 | 177 | 2.60e-14 | 75.5 |
Find 140 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTATACTCACCAATTT+TGG | 0.071732 | 4_1:+64308894 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-64311339 | Msa0563860:CDS |
| CAGCCATTTGGAATTTGTTT+TGG | 0.197424 | 4_1:-64308548 | Msa0563860:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 4_1:+64311498 | None:intergenic |
| AAAGGAATCGGAAGAAATTA+AGG | 0.234594 | 4_1:+64311633 | None:intergenic |
| ATGACAAGATGGTCAGAAAA+TGG | 0.246254 | 4_1:-64308695 | Msa0563860:CDS |
| AATATCAGTAGCTGCAAATT+TGG | 0.248946 | 4_1:-64310667 | Msa0563860:CDS |
| TGCACTTCTATAGATGATTT+AGG | 0.260197 | 4_1:+64308290 | None:intergenic |
| ATGTTATCTTTAACCAAAAT+AGG | 0.263164 | 4_1:+64311326 | None:intergenic |
| TTGATGTTAATTGGTTTCTT+TGG | 0.276109 | 4_1:+64311507 | None:intergenic |
| TTTAGTAGCATACTTGCTAT+TGG | 0.285041 | 4_1:-64308614 | Msa0563860:CDS |
| TGAGTGAGTGGTCAAATTAC+AGG | 0.310539 | 4_1:-64311175 | Msa0563860:CDS |
| GGCTCCATCGTATGCCCTTC+AGG | 0.312234 | 4_1:-64310615 | Msa0563860:CDS |
| GAATCTGGTGCTATCATATT+GGG | 0.314103 | 4_1:-64311209 | Msa0563860:CDS |
| TTTCATCATGAGTTGACTAA+TGG | 0.314260 | 4_1:-64311673 | None:intergenic |
| CTAAAGAAAGACGGACTAAT+AGG | 0.316078 | 4_1:-64309952 | Msa0563860:CDS |
| TGTGTTGAACCCATCTTATT+TGG | 0.322168 | 4_1:+64308119 | None:intergenic |
| CAGGGATCATCCAAAGTATA+TGG | 0.328369 | 4_1:+64310711 | None:intergenic |
| GGAATCTGGTGCTATCATAT+TGG | 0.328454 | 4_1:-64311210 | Msa0563860:CDS |
| CAGGCAGAGAGGTGCAGTTT+TGG | 0.331310 | 4_1:-64309081 | Msa0563860:CDS |
| TACCCGACTGTGTCTTGCCT+TGG | 0.332981 | 4_1:+64310522 | None:intergenic |
| AATTGAGCATAGCCACCTTC+TGG | 0.348881 | 4_1:+64309976 | None:intergenic |
| ATGCTACTAAAGGATGAAAA+AGG | 0.353386 | 4_1:+64308626 | None:intergenic |
| CAGCTTGCAACATGATATCT+TGG | 0.356824 | 4_1:+64308765 | None:intergenic |
| GTGTCTTGCCTTGGGCTGAT+TGG | 0.357682 | 4_1:+64310531 | None:intergenic |
| TGAAAACCCGCGGTACAATA+TGG | 0.358385 | 4_1:-64308237 | Msa0563860:three_prime_UTR |
| TCCAAGACACCTTTGAGAAC+TGG | 0.358911 | 4_1:+64311440 | None:intergenic |
| TGAAAGAGAACCTGGTTGTT+TGG | 0.377039 | 4_1:+64311364 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.382745 | 4_1:-64308746 | Msa0563860:CDS |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:+64310075 | None:intergenic |
| TAGATGATTTAGGATTGTTC+AGG | 0.383525 | 4_1:+64308300 | None:intergenic |
| GTTACCAAGTTAAGGGAATC+TGG | 0.384512 | 4_1:-64311224 | Msa0563860:CDS |
| TATGAAAAGGGTCAGCCATT+TGG | 0.384634 | 4_1:-64308560 | Msa0563860:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.391166 | 4_1:-64308602 | Msa0563860:CDS |
| CCTGCTGGAACAATGATTCC+AGG | 0.396619 | 4_1:+64308584 | None:intergenic |
| TCAGCATGTGCTAATGCATC+TGG | 0.402283 | 4_1:+64311410 | None:intergenic |
| TACCTTTCCTTGTCCACCTC+TGG | 0.402662 | 4_1:+64311124 | None:intergenic |
| CCAAGACACCTTTGAGAACT+GGG | 0.403077 | 4_1:+64311441 | None:intergenic |
| AACAACCAGGTTCTCTTTCA+AGG | 0.405217 | 4_1:-64311361 | Msa0563860:CDS |
| ATGGTAGTTGATTGCGTAGC+AGG | 0.405906 | 4_1:+64311584 | None:intergenic |
| TAAAGATAACATTGCAACTA+AGG | 0.406275 | 4_1:-64311315 | Msa0563860:CDS |
| TAGGAGGAACTTGATAAGTA+TGG | 0.408411 | 4_1:-64308788 | Msa0563860:CDS |
| ACCCGACTGTGTCTTGCCTT+GGG | 0.412367 | 4_1:+64310523 | None:intergenic |
| TTTGCAGAATCCATATACTT+TGG | 0.416501 | 4_1:-64310721 | Msa0563860:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+64308506 | None:intergenic |
| TGCGTAGCAGGGAAGGTAAC+TGG | 0.418344 | 4_1:+64311596 | None:intergenic |
| AGGTGTTGTTACCAAGTTAA+GGG | 0.431180 | 4_1:-64311231 | Msa0563860:CDS |
| CAGGTGTTGTTACCAAGTTA+AGG | 0.431264 | 4_1:-64311232 | Msa0563860:CDS |
| CCCAGTTCTCAAAGGTGTCT+TGG | 0.444958 | 4_1:-64311441 | Msa0563860:CDS |
| GGGAAGTTCACCAAATAAGA+TGG | 0.455916 | 4_1:-64308129 | Msa0563860:three_prime_UTR |
| AAGGAATCGGAAGAAATTAA+GGG | 0.463803 | 4_1:+64311634 | None:intergenic |
| AGCACCAGATTCCCTTAACT+TGG | 0.473094 | 4_1:+64311220 | None:intergenic |
| TTGCAAGCTGAAAAGACAAA+TGG | 0.474253 | 4_1:-64308752 | Msa0563860:CDS |
| TTCATAGCAATCTCTTCACT+TGG | 0.477749 | 4_1:+64309014 | None:intergenic |
| TGACAAGATGGTCAGAAAAT+GGG | 0.481903 | 4_1:-64308694 | Msa0563860:CDS |
| ACAATGATATTCACGGGAAG+TGG | 0.481922 | 4_1:+64308395 | None:intergenic |
| AGCTACACCTGAAAACGTTA+AGG | 0.482219 | 4_1:-64309861 | Msa0563860:intron |
| GCCCAAGGCAAGACACAGTC+GGG | 0.483498 | 4_1:-64310524 | Msa0563860:intron |
| GTGATGCTACTAAGTCTTTG+AGG | 0.490355 | 4_1:+64308961 | None:intergenic |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:-64308573 | Msa0563860:CDS |
| AATAGCAAGTATGCTACTAA+AGG | 0.492751 | 4_1:+64308616 | None:intergenic |
| AGTAGCATACTTGCTATTGG+AGG | 0.497454 | 4_1:-64308611 | Msa0563860:CDS |
| TCTGACTTTCGAAGAGGAGG+TGG | 0.500340 | 4_1:+64308452 | None:intergenic |
| TTTGAATATTGATTTGGTTG+AGG | 0.503213 | 4_1:+64311465 | None:intergenic |
| CCTGGAATCATTGTTCCAGC+AGG | 0.504120 | 4_1:-64308584 | Msa0563860:CDS |
| ATATTCACGGGAAGTGGAGG+GGG | 0.509394 | 4_1:+64308401 | None:intergenic |
| TTCAGGTCTTAACTCAGTGG+TGG | 0.510569 | 4_1:-64310598 | Msa0563860:CDS |
| GTAACAACACCTGCATCTCT+TGG | 0.511275 | 4_1:+64311242 | None:intergenic |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 4_1:+64308545 | None:intergenic |
| CAAAGAAACAATGATATTCA+CGG | 0.513329 | 4_1:+64308388 | None:intergenic |
| ATGTCACTAACATGGTTGAT+TGG | 0.514444 | 4_1:-64308262 | Msa0563860:three_prime_UTR |
| GGACTAATAGGAAAGAGAAT+AGG | 0.515996 | 4_1:-64309940 | Msa0563860:CDS |
| CAGCATCCATATTGTACCGC+GGG | 0.519748 | 4_1:+64308231 | None:intergenic |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:-64311353 | Msa0563860:CDS |
| CCTCTGGCACTCCAACCACT+TGG | 0.532038 | 4_1:+64311140 | None:intergenic |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.533543 | 4_1:+64310032 | None:intergenic |
| ATGATATTCACGGGAAGTGG+AGG | 0.534855 | 4_1:+64308398 | None:intergenic |
| TATGGATGCTGCTACATGTA+TGG | 0.540308 | 4_1:-64308219 | Msa0563860:three_prime_UTR |
| ACATCTGCCAAGCTTCTCAC+TGG | 0.542835 | 4_1:+64308939 | None:intergenic |
| TCAGTGGTGCCAAGAGATGC+AGG | 0.543965 | 4_1:-64311251 | Msa0563860:CDS |
| AGCATCACCAGTGAGAAGCT+TGG | 0.549066 | 4_1:-64308946 | Msa0563860:CDS |
| GGCCACTGAATTCTCAATTG+AGG | 0.551453 | 4_1:-64311561 | Msa0563860:CDS |
| TGATATTCACGGGAAGTGGA+GGG | 0.551594 | 4_1:+64308399 | None:intergenic |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:-64311293 | Msa0563860:CDS |
| GGAAGTTCACCAAATAAGAT+GGG | 0.552846 | 4_1:-64308128 | Msa0563860:three_prime_UTR |
| TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:-64310045 | Msa0563860:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:-64310561 | Msa0563860:CDS |
| TGCAACCTTGAAAGAGAACC+TGG | 0.558333 | 4_1:+64311356 | None:intergenic |
| TGCCAGAGGTGGACAAGGAA+AGG | 0.558940 | 4_1:-64311126 | Msa0563860:intron |
| TGATCCACTACTTGATCCAC+AGG | 0.561542 | 4_1:+64310692 | None:intergenic |
| AATTGAGAATTCAGTGGCCA+TGG | 0.562344 | 4_1:+64311565 | None:intergenic |
| AGTTGATTGCGTAGCAGGGA+AGG | 0.562910 | 4_1:+64311589 | None:intergenic |
| CAAACTTCTGACTTTCGAAG+AGG | 0.563453 | 4_1:+64308446 | None:intergenic |
| AAAGAAACAATGATATTCAC+GGG | 0.565624 | 4_1:+64308389 | None:intergenic |
| GATATTCACGGGAAGTGGAG+GGG | 0.568388 | 4_1:+64308400 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.570325 | 4_1:-64308572 | Msa0563860:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.570811 | 4_1:-64311187 | Msa0563860:CDS |
| AGTTCTCAAAGGTGTCTTGG+AGG | 0.575693 | 4_1:-64311438 | Msa0563860:CDS |
| CTAACGGAGCTCCAAGTGGT+TGG | 0.578358 | 4_1:-64311151 | Msa0563860:CDS |
| TGGAGTGCCAGAGGTGGACA+AGG | 0.582665 | 4_1:-64311131 | Msa0563860:CDS |
| AACAAATAAACTTGATGCTG+TGG | 0.584496 | 4_1:-64308654 | Msa0563860:CDS |
| ACCACTGAGTTAAGACCTGA+AGG | 0.584572 | 4_1:+64310600 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:-64309961 | Msa0563860:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:-64308706 | Msa0563860:CDS |
| TCAGGTCTTAACTCAGTGGT+GGG | 0.586914 | 4_1:-64310597 | Msa0563860:CDS |
| TGGTCAAATTACAGGTCTAA+CGG | 0.594051 | 4_1:-64311167 | Msa0563860:CDS |
| ACTTCTGACTTTCGAAGAGG+AGG | 0.596687 | 4_1:+64308449 | None:intergenic |
| AGCCCAAGGCAAGACACAGT+CGG | 0.598710 | 4_1:-64310525 | Msa0563860:CDS |
| TGGTGCTATCATATTGGGGA+AGG | 0.599173 | 4_1:-64311204 | Msa0563860:CDS |
| AATTTGGTGACTGTGTCACT+TGG | 0.602109 | 4_1:-64310651 | Msa0563860:CDS |
| ATTTGACCACTCACTCAAAG+TGG | 0.602997 | 4_1:+64311181 | None:intergenic |
| CCCTTCAGGTCTTAACTCAG+TGG | 0.604539 | 4_1:-64310601 | Msa0563860:CDS |
| CCAAGTGGTTGGAGTGCCAG+AGG | 0.606261 | 4_1:-64311140 | Msa0563860:CDS |
| ATTCAAAACCCAGTTCTCAA+AGG | 0.608358 | 4_1:-64311449 | Msa0563860:CDS |
| TCAAAGTATATTCCAGAAGG+TGG | 0.608727 | 4_1:-64309988 | Msa0563860:CDS |
| AGTGGTTGGAGTGCCAGAGG+TGG | 0.615681 | 4_1:-64311137 | Msa0563860:CDS |
| GAGAGAAGGACCAAACAACC+AGG | 0.617288 | 4_1:-64311374 | Msa0563860:CDS |
| TCTTCAACTTAATTTACTAG+CGG | 0.617446 | 4_1:+64308362 | None:intergenic |
| AGGGCATACGATGGAGCCAT+CGG | 0.621553 | 4_1:+64310620 | None:intergenic |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.622629 | 4_1:-64311388 | Msa0563860:CDS |
| GCATCAAAGTATATTCCAGA+AGG | 0.627357 | 4_1:-64309991 | Msa0563860:CDS |
| TGGTAGTTGATTGCGTAGCA+GGG | 0.628397 | 4_1:+64311585 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.630288 | 4_1:-64310579 | Msa0563860:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:+64310567 | None:intergenic |
| TTCCTCAATTGAGAATTCAG+TGG | 0.636730 | 4_1:+64311559 | None:intergenic |
| GATCCCTGTGGATCAAGTAG+TGG | 0.645260 | 4_1:-64310696 | Msa0563860:CDS |
| GTGTAATTCCAATCAGCCCA+AGG | 0.647537 | 4_1:-64310539 | Msa0563860:CDS |
| AAGACCTGAAGGGCATACGA+TGG | 0.652767 | 4_1:+64310611 | None:intergenic |
| AAATTAAGGGCAAACATGTG+CGG | 0.655310 | 4_1:+64311647 | None:intergenic |
| AATCTGGTGCTATCATATTG+GGG | 0.666419 | 4_1:-64311208 | Msa0563860:CDS |
| TGCTACGCAATCAACTACCA+TGG | 0.679600 | 4_1:-64311582 | Msa0563860:CDS |
| GATGAAATTATCAGGCAGAG+AGG | 0.691759 | 4_1:-64309092 | Msa0563860:intron |
| AGGTCTAACGGAGCTCCAAG+TGG | 0.694116 | 4_1:-64311155 | Msa0563860:CDS |
| TATACTTTGGATGATCCCTG+TGG | 0.698609 | 4_1:-64310708 | Msa0563860:CDS |
| GCATGTTGATGTCACTAACA+TGG | 0.709629 | 4_1:-64308270 | Msa0563860:three_prime_UTR |
| TTGATTGGTCTGAAAACCCG+CGG | 0.710995 | 4_1:-64308247 | Msa0563860:three_prime_UTR |
| GCAGCATCCATATTGTACCG+CGG | 0.711508 | 4_1:+64308230 | None:intergenic |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-64310636 | Msa0563860:CDS |
| CCACTGAGTTAAGACCTGAA+GGG | 0.717424 | 4_1:+64310601 | None:intergenic |
| GATCCACTACTTGATCCACA+GGG | 0.772110 | 4_1:+64310693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAATTATTTAGTA+TGG | - | chr4_1:64308662-64308681 | Msa0563860:CDS | 10.0% |
| !!! | GACTAATTTTTTTTTTAATA+AGG | + | chr4_1:64308931-64308950 | None:intergenic | 10.0% |
| !! | GATATTAATAAATATTAATC+TGG | - | chr4_1:64310868-64310887 | Msa0563860:intron | 10.0% |
| !!! | TTTTATAAATATCATTGCAA+AGG | + | chr4_1:64310092-64310111 | None:intergenic | 15.0% |
| !!! | AAATTATTTTAGTCTTTCAT+AGG | - | chr4_1:64310157-64310176 | Msa0563860:intron | 15.0% |
| !! | TAATGTAAATGTAAGTAAAT+AGG | + | chr4_1:64310566-64310585 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTATTTGTTTA+TGG | - | chr4_1:64310838-64310857 | Msa0563860:intron | 15.0% |
| !! | AATTGTTGTATAATAATTGT+AGG | - | chr4_1:64310903-64310922 | Msa0563860:intron | 15.0% |
| !! | ATGTTATCTTTAACCAAAAT+AGG | + | chr4_1:64308387-64308406 | None:intergenic | 20.0% |
| !! | TCTTAGTTAATTTAGTTAAC+TGG | - | chr4_1:64308622-64308641 | Msa0563860:CDS | 20.0% |
| !! | TAGACTATAAATTCTATGTT+TGG | + | chr4_1:64308811-64308830 | None:intergenic | 20.0% |
| !! | GCAAGAATATTAGAATATAT+TGG | + | chr4_1:64309535-64309554 | None:intergenic | 20.0% |
| !! | GACTAAAATAATTTCATTCA+AGG | + | chr4_1:64310151-64310170 | None:intergenic | 20.0% |
| !! | ATAACATTGATGAAATTATC+AGG | - | chr4_1:64310610-64310629 | Msa0563860:CDS | 20.0% |
| !! | TTTATTTGTTTATGGATACT+TGG | - | chr4_1:64310846-64310865 | Msa0563860:intron | 20.0% |
| !!! | GAAAGATTTTAGAAAGGAAT+CGG | + | chr4_1:64308092-64308111 | None:intergenic | 25.0% |
| !! | TTGATGTTAATTGGTTTCTT+TGG | + | chr4_1:64308206-64308225 | None:intergenic | 25.0% |
| !!! | TTTGAATATTGATTTGGTTG+AGG | + | chr4_1:64308248-64308267 | None:intergenic | 25.0% |
| ! | TAAAGATAACATTGCAACTA+AGG | - | chr4_1:64308395-64308414 | Msa0563860:three_prime_UTR | 25.0% |
| ! | TAAATTAACTAAGAAGTAGC+AGG | + | chr4_1:64308616-64308635 | None:intergenic | 25.0% |
| !! | ATCAACTCATTTTCAATATC+AGG | + | chr4_1:64308740-64308759 | None:intergenic | 25.0% |
| !!! | ATTGAAAATGAGTTGATCAA+AGG | - | chr4_1:64308743-64308762 | Msa0563860:CDS | 25.0% |
| ! | AACTAACCTAAACATGATTA+TGG | - | chr4_1:64308840-64308859 | Msa0563860:intron | 25.0% |
| ! | ACTAACCTAAACATGATTAT+GGG | - | chr4_1:64308841-64308860 | Msa0563860:intron | 25.0% |
| !! | TAAAACAATGTCTTTTGACA+GGG | + | chr4_1:64309576-64309595 | None:intergenic | 25.0% |
| !! | TTAAAACAATGTCTTTTGAC+AGG | + | chr4_1:64309577-64309596 | None:intergenic | 25.0% |
| !!! | TATATCAAACTTCAAGTTGT+TGG | + | chr4_1:64309943-64309962 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTTTACAAACCA+TGG | - | chr4_1:64310183-64310202 | Msa0563860:intron | 25.0% |
| ! | TCATGTTAGATAAACTATGA+CGG | - | chr4_1:64310210-64310229 | Msa0563860:intron | 25.0% |
| !!! | TCACTTTTGTAATTTAGTCT+TGG | + | chr4_1:64310251-64310270 | None:intergenic | 25.0% |
| !!! | ATTTGATCTTTATTTTCTGC+AGG | + | chr4_1:64310336-64310355 | None:intergenic | 25.0% |
| ! | AATTTAAGCTGTCCAAAATT+TGG | - | chr4_1:64310466-64310485 | Msa0563860:intron | 25.0% |
| !! | TTGTAACTAATTTTCATGAG+AGG | + | chr4_1:64310528-64310547 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTTTTCTTATTGA+AGG | + | chr4_1:64310802-64310821 | None:intergenic | 25.0% |
| ! | CAATAAGAAAAACCCAAAAT+TGG | - | chr4_1:64310803-64310822 | Msa0563860:intron | 25.0% |
| !! | CATTTATACTCACCAATTTT+GGG | + | chr4_1:64310818-64310837 | None:intergenic | 25.0% |
| !! | ACATTTATACTCACCAATTT+TGG | + | chr4_1:64310819-64310838 | None:intergenic | 25.0% |
| ! | TGTTGTATAATAATTGTAGG+AGG | - | chr4_1:64310906-64310925 | Msa0563860:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | - | chr4_1:64311004-64311023 | Msa0563860:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:64311207-64311226 | None:intergenic | 25.0% |
| ! | AAAGAAACAATGATATTCAC+GGG | + | chr4_1:64311324-64311343 | None:intergenic | 25.0% |
| ! | CAAAGAAACAATGATATTCA+CGG | + | chr4_1:64311325-64311344 | None:intergenic | 25.0% |
| ! | TCTTCAACTTAATTTACTAG+CGG | + | chr4_1:64311351-64311370 | None:intergenic | 25.0% |
| AAGGAATCGGAAGAAATTAA+GGG | + | chr4_1:64308079-64308098 | None:intergenic | 30.0% | |
| AAAGGAATCGGAAGAAATTA+AGG | + | chr4_1:64308080-64308099 | None:intergenic | 30.0% | |
| !! | CTGGTTGAAAGATTTTAGAA+AGG | + | chr4_1:64308098-64308117 | None:intergenic | 30.0% |
| CAAGTTGTCTTGATGTTAAT+TGG | + | chr4_1:64308215-64308234 | None:intergenic | 30.0% | |
| !!! | CTGGGTTTTGAATATTGATT+TGG | + | chr4_1:64308254-64308273 | None:intergenic | 30.0% |
| AATCAATTCAGTCATTCACT+CGG | + | chr4_1:64308710-64308729 | None:intergenic | 30.0% | |
| !! | AAAATGAGTTGATCAAAGGT+AGG | - | chr4_1:64308747-64308766 | Msa0563860:CDS | 30.0% |
| !! | AAATGAGTTGATCAAAGGTA+GGG | - | chr4_1:64308748-64308767 | Msa0563860:CDS | 30.0% |
| TTTGCAGAATCCATATACTT+TGG | - | chr4_1:64308989-64309008 | Msa0563860:CDS | 30.0% | |
| AATATCAGTAGCTGCAAATT+TGG | - | chr4_1:64309043-64309062 | Msa0563860:CDS | 30.0% | |
| TACTAAACGCAATAGAAATG+TGG | + | chr4_1:64309232-64309251 | None:intergenic | 30.0% | |
| ACTTCTGATAAGAGCAAAAT+TGG | - | chr4_1:64309444-64309463 | Msa0563860:intron | 30.0% | |
| GAAAAATTGGAAATGCTTAC+AGG | - | chr4_1:64309509-64309528 | Msa0563860:intron | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | - | chr4_1:64309749-64309768 | Msa0563860:intron | 30.0% |
| !! | TTTTAGAAATGACACTTTCC+CGG | - | chr4_1:64309814-64309833 | Msa0563860:intron | 30.0% |
| ! | TGTAGCTTGAATGTTTTATC+CGG | + | chr4_1:64309836-64309855 | None:intergenic | 30.0% |
| ATGACTATACACAATTCTCA+TGG | - | chr4_1:64309898-64309917 | Msa0563860:CDS | 30.0% | |
| !! | ATGGAGTTGTTTGTTGTTAT+CGG | - | chr4_1:64309917-64309936 | Msa0563860:CDS | 30.0% |
| ! | TTATCTAACATGATTAGCCA+TGG | + | chr4_1:64310203-64310222 | None:intergenic | 30.0% |
| !!! | CTTTTGTAATTTAGTCTTGG+TGG | + | chr4_1:64310248-64310267 | None:intergenic | 30.0% |
| TCCTGTGTTCATTACTTAAT+CGG | - | chr4_1:64310422-64310441 | Msa0563860:intron | 30.0% | |
| AACAAATAAACTTGATGCTG+TGG | - | chr4_1:64311056-64311075 | Msa0563860:intron | 30.0% | |
| ATGCTACTAAAGGATGAAAA+AGG | + | chr4_1:64311087-64311106 | None:intergenic | 30.0% | |
| AATAGCAAGTATGCTACTAA+AGG | + | chr4_1:64311097-64311116 | None:intergenic | 30.0% | |
| !! | TTTAGTAGCATACTTGCTAT+TGG | - | chr4_1:64311096-64311115 | Msa0563860:intron | 30.0% |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | - | chr4_1:64311174-64311193 | Msa0563860:CDS | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | - | chr4_1:64311175-64311194 | Msa0563860:CDS | 30.0% |
| ! | TAGATGATTTAGGATTGTTC+AGG | + | chr4_1:64311413-64311432 | None:intergenic | 30.0% |
| TGCACTTCTATAGATGATTT+AGG | + | chr4_1:64311423-64311442 | None:intergenic | 30.0% | |
| ATACCAGAATGCATTAATGT+TGG | - | chr4_1:64311560-64311579 | Msa0563860:CDS | 30.0% | |
| TACCAGAATGCATTAATGTT+GGG | - | chr4_1:64311561-64311580 | Msa0563860:CDS | 30.0% | |
| AAATTAAGGGCAAACATGTG+CGG | + | chr4_1:64308066-64308085 | None:intergenic | 35.0% | |
| TTCCTCAATTGAGAATTCAG+TGG | + | chr4_1:64308154-64308173 | None:intergenic | 35.0% | |
| ATTCAAAACCCAGTTCTCAA+AGG | - | chr4_1:64308261-64308280 | Msa0563860:three_prime_UTR | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:64308371-64308390 | Msa0563860:three_prime_UTR | 35.0% |
| !! | AGGTGTTGTTACCAAGTTAA+GGG | - | chr4_1:64308479-64308498 | Msa0563860:CDS | 35.0% |
| !! | GAATCTGGTGCTATCATATT+GGG | - | chr4_1:64308501-64308520 | Msa0563860:CDS | 35.0% |
| !! | AATCTGGTGCTATCATATTG+GGG | - | chr4_1:64308502-64308521 | Msa0563860:CDS | 35.0% |
| TGGTCAAATTACAGGTCTAA+CGG | - | chr4_1:64308543-64308562 | Msa0563860:CDS | 35.0% | |
| GTTCATAGTTACCGATAAGT+GGG | - | chr4_1:64308684-64308703 | Msa0563860:CDS | 35.0% | |
| ! | ATCAAAGGTAGGGATGATTT+TGG | - | chr4_1:64308758-64308777 | Msa0563860:CDS | 35.0% |
| ! | TCAAAGGTAGGGATGATTTT+GGG | - | chr4_1:64308759-64308778 | Msa0563860:CDS | 35.0% |
| ACCGAAATCATTTCCAAAGT+CGG | - | chr4_1:64308782-64308801 | Msa0563860:CDS | 35.0% | |
| ! | TCCGACTTTGGAAATGATTT+CGG | + | chr4_1:64308786-64308805 | None:intergenic | 35.0% |
| AACCTAAACATGATTATGGG+AGG | - | chr4_1:64308844-64308863 | Msa0563860:intron | 35.0% | |
| TACCTCCCATAATCATGTTT+AGG | + | chr4_1:64308849-64308868 | None:intergenic | 35.0% | |
| !! | GAAATAAGTGAGAGAGCATT+AGG | - | chr4_1:64308881-64308900 | Msa0563860:intron | 35.0% |
| ! | CACATTTGTTTCTCTCTATC+AGG | + | chr4_1:64309364-64309383 | None:intergenic | 35.0% |
| CTGATAAGAGCAAAATTGGA+TGG | - | chr4_1:64309448-64309467 | Msa0563860:intron | 35.0% | |
| AATGTGTAACATCAGTTGTG+TGG | - | chr4_1:64309601-64309620 | Msa0563860:intron | 35.0% | |
| TATGTTCTTGAAACCATAGC+AGG | - | chr4_1:64309665-64309684 | Msa0563860:intron | 35.0% | |
| GCATCAAAGTATATTCCAGA+AGG | - | chr4_1:64309719-64309738 | Msa0563860:intron | 35.0% | |
| TCAAAGTATATTCCAGAAGG+TGG | - | chr4_1:64309722-64309741 | Msa0563860:intron | 35.0% | |
| !! | CTAAAGAAAGACGGACTAAT+AGG | - | chr4_1:64309758-64309777 | Msa0563860:intron | 35.0% |
| GGACTAATAGGAAAGAGAAT+AGG | - | chr4_1:64309770-64309789 | Msa0563860:intron | 35.0% | |
| ! | GTAGCTTGAATGTTTTATCC+GGG | + | chr4_1:64309835-64309854 | None:intergenic | 35.0% |
| ! | TTAGCTACCTTAACGTTTTC+AGG | + | chr4_1:64309859-64309878 | None:intergenic | 35.0% |
| TTTCATTCAAGGATGCTGAT+AGG | + | chr4_1:64310140-64310159 | None:intergenic | 35.0% | |
| !! | AATTTAGTCTTGGTGGTGTA+TGG | + | chr4_1:64310241-64310260 | None:intergenic | 35.0% |
| TCCGATTAAGTAATGAACAC+AGG | + | chr4_1:64310426-64310445 | None:intergenic | 35.0% | |
| TTGGACAGCTTAAATTGTGT+TGG | + | chr4_1:64310462-64310481 | None:intergenic | 35.0% | |
| AAGTAAATAGGTCTGCAGTA+TGG | + | chr4_1:64310554-64310573 | None:intergenic | 35.0% | |
| TTCATAGCAATCTCTTCACT+TGG | + | chr4_1:64310699-64310718 | None:intergenic | 35.0% | |
| TAGGAGGAACTTGATAAGTA+TGG | - | chr4_1:64310922-64310941 | Msa0563860:intron | 35.0% | |
| TTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:64310958-64310977 | Msa0563860:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:64310964-64310983 | Msa0563860:intron | 35.0% | |
| ATGACAAGATGGTCAGAAAA+TGG | - | chr4_1:64311015-64311034 | Msa0563860:intron | 35.0% | |
| TGACAAGATGGTCAGAAAAT+GGG | - | chr4_1:64311016-64311035 | Msa0563860:intron | 35.0% | |
| !! | CAGCCATTTGGAATTTGTTT+TGG | - | chr4_1:64311162-64311181 | Msa0563860:CDS | 35.0% |
| CCTCCAAAACAAATTCCAAA+TGG | + | chr4_1:64311168-64311187 | None:intergenic | 35.0% | |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | - | chr4_1:64311165-64311184 | Msa0563860:CDS | 35.0% |
| ATGTCACTAACATGGTTGAT+TGG | - | chr4_1:64311448-64311467 | Msa0563860:CDS | 35.0% | |
| GTATGGTGAAGTTGTATTCA+TGG | - | chr4_1:64311508-64311527 | Msa0563860:CDS | 35.0% | |
| TTCCCAACATTAATGCATTC+TGG | + | chr4_1:64311566-64311585 | None:intergenic | 35.0% | |
| GGAAGTTCACCAAATAAGAT+GGG | - | chr4_1:64311582-64311601 | Msa0563860:CDS | 35.0% | |
| TGTGTTGAACCCATCTTATT+TGG | + | chr4_1:64311594-64311613 | None:intergenic | 35.0% | |
| AATTGAGAATTCAGTGGCCA+TGG | + | chr4_1:64308148-64308167 | None:intergenic | 40.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | - | chr4_1:64308322-64308341 | Msa0563860:three_prime_UTR | 40.0% | |
| TGAAAGAGAACCTGGTTGTT+TGG | + | chr4_1:64308349-64308368 | None:intergenic | 40.0% | |
| AACAACCAGGTTCTCTTTCA+AGG | - | chr4_1:64308349-64308368 | Msa0563860:three_prime_UTR | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | - | chr4_1:64308417-64308436 | Msa0563860:three_prime_UTR | 40.0% | |
| !! | CAGGTGTTGTTACCAAGTTA+AGG | - | chr4_1:64308478-64308497 | Msa0563860:CDS | 40.0% |
| GTTACCAAGTTAAGGGAATC+TGG | - | chr4_1:64308486-64308505 | Msa0563860:CDS | 40.0% | |
| !! | GGAATCTGGTGCTATCATAT+TGG | - | chr4_1:64308500-64308519 | Msa0563860:CDS | 40.0% |
| ATTTGACCACTCACTCAAAG+TGG | + | chr4_1:64308532-64308551 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCAAATTAC+AGG | - | chr4_1:64308535-64308554 | Msa0563860:CDS | 40.0% | |
| GGTTCATAGTTACCGATAAG+TGG | - | chr4_1:64308683-64308702 | Msa0563860:CDS | 40.0% | |
| !! | ATAAGTGAGAGAGCATTAGG+TGG | - | chr4_1:64308884-64308903 | Msa0563860:intron | 40.0% |
| !! | TAAGTGAGAGAGCATTAGGT+GGG | - | chr4_1:64308885-64308904 | Msa0563860:intron | 40.0% |
| CAGGGATCATCCAAAGTATA+TGG | + | chr4_1:64309002-64309021 | None:intergenic | 40.0% | |
| TATACTTTGGATGATCCCTG+TGG | - | chr4_1:64309002-64309021 | Msa0563860:CDS | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | - | chr4_1:64309059-64309078 | Msa0563860:CDS | 40.0% |
| !! | ACACACACAAGATTTTGGCA+TGG | + | chr4_1:64309483-64309502 | None:intergenic | 40.0% |
| TGTGTGTGTGCGTGAAAAAT+TGG | - | chr4_1:64309496-64309515 | Msa0563860:intron | 40.0% | |
| ! | ACAATGTCTTTTGACAGGGA+AGG | + | chr4_1:64309572-64309591 | None:intergenic | 40.0% |
| !!! | TCAGTTGTGTGGTTTTGTAC+AGG | - | chr4_1:64309612-64309631 | Msa0563860:intron | 40.0% |
| ! | TTTTGTACAGGCCAATTTGC+AGG | - | chr4_1:64309624-64309643 | Msa0563860:intron | 40.0% |
| TCTGATACAGTCCTGCAAAT+TGG | + | chr4_1:64309638-64309657 | None:intergenic | 40.0% | |
| AGCTACACCTGAAAACGTTA+AGG | - | chr4_1:64309849-64309868 | Msa0563860:intron | 40.0% | |
| ! | TGTCACCATCGTCCAAATTT+TGG | + | chr4_1:64310481-64310500 | None:intergenic | 40.0% |
| GATGAAATTATCAGGCAGAG+AGG | - | chr4_1:64310618-64310637 | Msa0563860:CDS | 40.0% | |
| GTGATGCTACTAAGTCTTTG+AGG | + | chr4_1:64310752-64310771 | None:intergenic | 40.0% | |
| CAGCTTGCAACATGATATCT+TGG | + | chr4_1:64310948-64310967 | None:intergenic | 40.0% | |
| !! | AGTAGCATACTTGCTATTGG+AGG | - | chr4_1:64311099-64311118 | Msa0563860:intron | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:64311137-64311156 | Msa0563860:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:64311138-64311157 | Msa0563860:CDS | 40.0% | |
| TATGAAAAGGGTCAGCCATT+TGG | - | chr4_1:64311150-64311169 | Msa0563860:CDS | 40.0% | |
| CAAACTTCTGACTTTCGAAG+AGG | + | chr4_1:64311267-64311286 | None:intergenic | 40.0% | |
| ACAATGATATTCACGGGAAG+TGG | + | chr4_1:64311318-64311337 | None:intergenic | 40.0% | |
| GCATGTTGATGTCACTAACA+TGG | - | chr4_1:64311440-64311459 | Msa0563860:CDS | 40.0% | |
| TATGGATGCTGCTACATGTA+TGG | - | chr4_1:64311491-64311510 | Msa0563860:CDS | 40.0% | |
| GGGAAGTTCACCAAATAAGA+TGG | - | chr4_1:64311581-64311600 | Msa0563860:CDS | 40.0% | |
| TGGTAGTTGATTGCGTAGCA+GGG | + | chr4_1:64308128-64308147 | None:intergenic | 45.0% | |
| ATGGTAGTTGATTGCGTAGC+AGG | + | chr4_1:64308129-64308148 | None:intergenic | 45.0% | |
| TGCTACGCAATCAACTACCA+TGG | - | chr4_1:64308128-64308147 | Msa0563860:three_prime_UTR | 45.0% | |
| GGCCACTGAATTCTCAATTG+AGG | - | chr4_1:64308149-64308168 | Msa0563860:intron | 45.0% | |
| ! | CCAAGACACCTTTGAGAACT+GGG | + | chr4_1:64308272-64308291 | None:intergenic | 45.0% |
| ! | TCCAAGACACCTTTGAGAAC+TGG | + | chr4_1:64308273-64308292 | None:intergenic | 45.0% |
| !! | AGTTCTCAAAGGTGTCTTGG+AGG | - | chr4_1:64308272-64308291 | Msa0563860:three_prime_UTR | 45.0% |
| TCAGCATGTGCTAATGCATC+TGG | + | chr4_1:64308303-64308322 | None:intergenic | 45.0% | |
| TGCAACCTTGAAAGAGAACC+TGG | + | chr4_1:64308357-64308376 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:64308357-64308376 | Msa0563860:three_prime_UTR | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | - | chr4_1:64308443-64308462 | Msa0563860:exon | 45.0% |
| GTAACAACACCTGCATCTCT+TGG | + | chr4_1:64308471-64308490 | None:intergenic | 45.0% | |
| AGCACCAGATTCCCTTAACT+TGG | + | chr4_1:64308493-64308512 | None:intergenic | 45.0% | |
| !! | TGGTGCTATCATATTGGGGA+AGG | - | chr4_1:64308506-64308525 | Msa0563860:CDS | 45.0% |
| ! | CTATGTTTGGCTTCCGACTT+TGG | + | chr4_1:64308798-64308817 | None:intergenic | 45.0% |
| !! | GGGCGTTTTGGTAGATTATG+AGG | - | chr4_1:64308905-64308924 | Msa0563860:intron | 45.0% |
| GATCCACTACTTGATCCACA+GGG | + | chr4_1:64309020-64309039 | None:intergenic | 45.0% | |
| TGATCCACTACTTGATCCAC+AGG | + | chr4_1:64309021-64309040 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:64309074-64309093 | Msa0563860:CDS | 45.0% |
| CCACTGAGTTAAGACCTGAA+GGG | + | chr4_1:64309112-64309131 | None:intergenic | 45.0% | |
| ACCACTGAGTTAAGACCTGA+AGG | + | chr4_1:64309113-64309132 | None:intergenic | 45.0% | |
| TTCAGGTCTTAACTCAGTGG+TGG | - | chr4_1:64309112-64309131 | Msa0563860:intron | 45.0% | |
| TCAGGTCTTAACTCAGTGGT+GGG | - | chr4_1:64309113-64309132 | Msa0563860:intron | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | + | chr4_1:64309146-64309165 | None:intergenic | 45.0% | |
| GTGTAATTCCAATCAGCCCA+AGG | - | chr4_1:64309171-64309190 | Msa0563860:intron | 45.0% | |
| AATGTGGACAAACGCTGTAC+AGG | + | chr4_1:64309216-64309235 | None:intergenic | 45.0% | |
| ! | CGCACACACACACAAGATTT+TGG | + | chr4_1:64309488-64309507 | None:intergenic | 45.0% |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | + | chr4_1:64309681-64309700 | None:intergenic | 45.0% |
| AATTGAGCATAGCCACCTTC+TGG | + | chr4_1:64309737-64309756 | None:intergenic | 45.0% | |
| GCTGTCCAAAATTTGGACGA+TGG | - | chr4_1:64310473-64310492 | Msa0563860:intron | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:64311108-64311127 | Msa0563860:intron | 45.0% |
| ! | TGACCCTTTTCATATCCTGC+TGG | + | chr4_1:64311144-64311163 | None:intergenic | 45.0% |
| ACTTCTGACTTTCGAAGAGG+AGG | + | chr4_1:64311264-64311283 | None:intergenic | 45.0% | |
| TGATATTCACGGGAAGTGGA+GGG | + | chr4_1:64311314-64311333 | None:intergenic | 45.0% | |
| ATGATATTCACGGGAAGTGG+AGG | + | chr4_1:64311315-64311334 | None:intergenic | 45.0% | |
| !! | TTGATTGGTCTGAAAACCCG+CGG | - | chr4_1:64311463-64311482 | Msa0563860:CDS | 45.0% |
| TGAAAACCCGCGGTACAATA+TGG | - | chr4_1:64311473-64311492 | Msa0563860:CDS | 45.0% | |
| AGTTGATTGCGTAGCAGGGA+AGG | + | chr4_1:64308124-64308143 | None:intergenic | 50.0% | |
| !! | CCCAGTTCTCAAAGGTGTCT+TGG | - | chr4_1:64308269-64308288 | Msa0563860:three_prime_UTR | 50.0% |
| GAGAGAAGGACCAAACAACC+AGG | - | chr4_1:64308336-64308355 | Msa0563860:three_prime_UTR | 50.0% | |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | - | chr4_1:64308435-64308454 | Msa0563860:exon | 50.0% |
| TACCTTTCCTTGTCCACCTC+TGG | + | chr4_1:64308589-64308608 | None:intergenic | 50.0% | |
| CATTCACTCGGCCCACTTAT+CGG | + | chr4_1:64308698-64308717 | None:intergenic | 50.0% | |
| !! | AGAGCATTAGGTGGGCGTTT+TGG | - | chr4_1:64308893-64308912 | Msa0563860:intron | 50.0% |
| GATCCCTGTGGATCAAGTAG+TGG | - | chr4_1:64309014-64309033 | Msa0563860:CDS | 50.0% | |
| ! | AAGACCTGAAGGGCATACGA+TGG | + | chr4_1:64309102-64309121 | None:intergenic | 50.0% |
| CCCTTCAGGTCTTAACTCAG+TGG | - | chr4_1:64309109-64309128 | Msa0563860:intron | 50.0% | |
| GTGGGCATCAAACCAACAGT+TGG | - | chr4_1:64309131-64309150 | Msa0563860:intron | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:64309149-64309168 | Msa0563860:intron | 50.0% |
| GCTCCAACTTTCTGCTAGAG+AGG | - | chr4_1:64310309-64310328 | Msa0563860:intron | 50.0% | |
| GGTCCTCTCTAGCAGAAAGT+TGG | + | chr4_1:64310315-64310334 | None:intergenic | 50.0% | |
| AGCATCACCAGTGAGAAGCT+TGG | - | chr4_1:64310764-64310783 | Msa0563860:intron | 50.0% | |
| ACATCTGCCAAGCTTCTCAC+TGG | + | chr4_1:64310774-64310793 | None:intergenic | 50.0% | |
| CCTGCTGGAACAATGATTCC+AGG | + | chr4_1:64311129-64311148 | None:intergenic | 50.0% | |
| CCTGGAATCATTGTTCCAGC+AGG | - | chr4_1:64311126-64311145 | Msa0563860:intron | 50.0% | |
| TCTGACTTTCGAAGAGGAGG+TGG | + | chr4_1:64311261-64311280 | None:intergenic | 50.0% | |
| ATATTCACGGGAAGTGGAGG+GGG | + | chr4_1:64311312-64311331 | None:intergenic | 50.0% | |
| GATATTCACGGGAAGTGGAG+GGG | + | chr4_1:64311313-64311332 | None:intergenic | 50.0% | |
| CAGCATCCATATTGTACCGC+GGG | + | chr4_1:64311482-64311501 | None:intergenic | 50.0% | |
| GCAGCATCCATATTGTACCG+CGG | + | chr4_1:64311483-64311502 | None:intergenic | 50.0% | |
| TGCGTAGCAGGGAAGGTAAC+TGG | + | chr4_1:64308117-64308136 | None:intergenic | 55.0% | |
| ! | TCAGTGGTGCCAAGAGATGC+AGG | - | chr4_1:64308459-64308478 | Msa0563860:CDS | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | - | chr4_1:64308523-64308542 | Msa0563860:CDS | 55.0% |
| AGGTCTAACGGAGCTCCAAG+TGG | - | chr4_1:64308555-64308574 | Msa0563860:CDS | 55.0% | |
| CTAACGGAGCTCCAAGTGGT+TGG | - | chr4_1:64308559-64308578 | Msa0563860:CDS | 55.0% | |
| TGCCAGAGGTGGACAAGGAA+AGG | - | chr4_1:64308584-64308603 | Msa0563860:CDS | 55.0% | |
| AGGGCATACGATGGAGCCAT+CGG | + | chr4_1:64309093-64309112 | None:intergenic | 55.0% | |
| GTGTCTTGCCTTGGGCTGAT+TGG | + | chr4_1:64309182-64309201 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+CGG | - | chr4_1:64309185-64309204 | Msa0563860:intron | 55.0% | |
| ACCCGACTGTGTCTTGCCTT+GGG | + | chr4_1:64309190-64309209 | None:intergenic | 55.0% | |
| TACCCGACTGTGTCTTGCCT+TGG | + | chr4_1:64309191-64309210 | None:intergenic | 55.0% | |
| !! | CAGGCAGAGAGGTGCAGTTT+TGG | - | chr4_1:64310629-64310648 | Msa0563860:CDS | 55.0% |
| CCTCTGGCACTCCAACCACT+TGG | + | chr4_1:64308573-64308592 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTTGGAGTGCCAG+AGG | - | chr4_1:64308570-64308589 | Msa0563860:CDS | 60.0% |
| ! | AGTGGTTGGAGTGCCAGAGG+TGG | - | chr4_1:64308573-64308592 | Msa0563860:CDS | 60.0% |
| ! | TGGAGTGCCAGAGGTGGACA+AGG | - | chr4_1:64308579-64308598 | Msa0563860:CDS | 60.0% |
| GGCTCCATCGTATGCCCTTC+AGG | - | chr4_1:64309095-64309114 | Msa0563860:intron | 60.0% | |
| GCCCAAGGCAAGACACAGTC+GGG | - | chr4_1:64309186-64309205 | Msa0563860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64308048 | 64311684 | 64308048 | ID=Msa0563860;Name=Msa0563860 |
| chr4_1 | mRNA | 64308048 | 64311684 | 64308048 | ID=Msa0563860-mRNA-1;Parent=Msa0563860;Name=Msa0563860-mRNA-1;_AED=0.39;_eAED=0.39;_QI=21|1|1|1|0.8|0.66|6|331|513 |
| chr4_1 | exon | 64308048 | 64308148 | 64308048 | ID=Msa0563860-mRNA-1:exon:20575;Parent=Msa0563860-mRNA-1 |
| chr4_1 | exon | 64308215 | 64308807 | 64308215 | ID=Msa0563860-mRNA-1:exon:20574;Parent=Msa0563860-mRNA-1 |
| chr4_1 | exon | 64308908 | 64309100 | 64308908 | ID=Msa0563860-mRNA-1:exon:20573;Parent=Msa0563860-mRNA-1 |
| chr4_1 | exon | 64309862 | 64310098 | 64309862 | ID=Msa0563860-mRNA-1:exon:20572;Parent=Msa0563860-mRNA-1 |
| chr4_1 | exon | 64310525 | 64310736 | 64310525 | ID=Msa0563860-mRNA-1:exon:20571;Parent=Msa0563860-mRNA-1 |
| chr4_1 | exon | 64311127 | 64311684 | 64311127 | ID=Msa0563860-mRNA-1:exon:20570;Parent=Msa0563860-mRNA-1 |
| chr4_1 | five_prime_UTR | 64311664 | 64311684 | 64311664 | ID=Msa0563860-mRNA-1:five_prime_utr;Parent=Msa0563860-mRNA-1 |
| chr4_1 | CDS | 64311127 | 64311663 | 64311127 | ID=Msa0563860-mRNA-1:cds;Parent=Msa0563860-mRNA-1 |
| chr4_1 | CDS | 64310525 | 64310736 | 64310525 | ID=Msa0563860-mRNA-1:cds;Parent=Msa0563860-mRNA-1 |
| chr4_1 | CDS | 64309862 | 64310098 | 64309862 | ID=Msa0563860-mRNA-1:cds;Parent=Msa0563860-mRNA-1 |
| chr4_1 | CDS | 64308908 | 64309100 | 64308908 | ID=Msa0563860-mRNA-1:cds;Parent=Msa0563860-mRNA-1 |
| chr4_1 | CDS | 64308445 | 64308807 | 64308445 | ID=Msa0563860-mRNA-1:cds;Parent=Msa0563860-mRNA-1 |
| chr4_1 | three_prime_UTR | 64308215 | 64308444 | 64308215 | ID=Msa0563860-mRNA-1:three_prime_utr;Parent=Msa0563860-mRNA-1 |
| chr4_1 | three_prime_UTR | 64308048 | 64308148 | 64308048 | ID=Msa0563860-mRNA-1:three_prime_utr;Parent=Msa0563860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
