Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078700 | XP_013468910.1 | 97.442 | 391 | 7 | 1 | 1 | 388 | 1 | 391 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078700 | A0A072VMB2 | 97.442 | 391 | 7 | 1 | 1 | 388 | 1 | 391 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052580 | Msa0078700 | 0.800864 | 1.180036e-48 | -8.615850e-47 |
| Msa0070120 | Msa0078700 | 0.834244 | 3.352829e-56 | -8.615850e-47 |
| Msa0078700 | Msa0095940 | 0.825716 | 4.026745e-54 | -8.615850e-47 |
| Msa0078700 | Msa0126430 | 0.826972 | 2.022958e-54 | -8.615850e-47 |
| Msa0078700 | Msa0129770 | 0.808370 | 3.201899e-50 | -8.615850e-47 |
| Msa0078700 | Msa0139680 | 0.830417 | 2.971699e-55 | -8.615850e-47 |
| Msa0078700 | Msa0150620 | 0.801299 | 9.611905e-49 | -8.615850e-47 |
| Msa0078700 | Msa0171330 | 0.848053 | 7.831894e-60 | -8.615850e-47 |
| Msa0078700 | Msa0185040 | 0.826531 | 2.577703e-54 | -8.615850e-47 |
| Msa0078700 | Msa0193950 | 0.824900 | 6.282694e-54 | -8.615850e-47 |
| Msa0078700 | Msa0217060 | 0.806511 | 7.939676e-50 | -8.615850e-47 |
| Msa0078700 | Msa0283620 | 0.801298 | 9.616764e-49 | -8.615850e-47 |
| Msa0078700 | Msa0285890 | 0.817385 | 3.388599e-52 | -8.615850e-47 |
| Msa0078700 | Msa0314240 | 0.807279 | 5.461846e-50 | -8.615850e-47 |
| Msa0078700 | Msa0319680 | 0.809363 | 1.963868e-50 | -8.615850e-47 |
| Msa0078700 | Msa0320170 | 0.804947 | 1.691441e-49 | -8.615850e-47 |
| Msa0078700 | Msa0345050 | 0.811282 | 7.569816e-51 | -8.615850e-47 |
| Msa0078700 | Msa0345890 | 0.820574 | 6.383689e-53 | -8.615850e-47 |
| Msa0078700 | Msa0383900 | 0.806857 | 6.708751e-50 | -8.615850e-47 |
| Msa0078700 | Msa0441260 | 0.816656 | 4.940936e-52 | -8.615850e-47 |
| Msa0078700 | Msa0449490 | 0.805617 | 1.224467e-49 | -8.615850e-47 |
| Msa0078700 | Msa0490320 | 0.820863 | 5.478308e-53 | -8.615850e-47 |
| Msa0078700 | Msa0497690 | 0.805192 | 1.502868e-49 | -8.615850e-47 |
| Msa0078700 | Msa0517270 | 0.814369 | 1.595751e-51 | -8.615850e-47 |
| Msa0078700 | Msa0534610 | 0.837508 | 4.988642e-57 | -8.615850e-47 |
| Msa0078700 | Msa0535400 | 0.813776 | 2.157127e-51 | -8.615850e-47 |
| Msa0078700 | Msa0556270 | 0.809698 | 1.664060e-50 | -8.615850e-47 |
| Msa0078700 | Msa0557240 | 0.802211 | 6.248999e-49 | -8.615850e-47 |
| Msa0078700 | Msa0563860 | 0.806217 | 9.159175e-50 | -8.615850e-47 |
| Msa0078700 | Msa0577490 | 0.818529 | 1.869679e-52 | -8.615850e-47 |
| Msa0078700 | Msa0590810 | 0.842410 | 2.629736e-58 | -8.615850e-47 |
| Msa0078700 | Msa0592660 | 0.804742 | 1.866551e-49 | -8.615850e-47 |
| Msa0078700 | Msa0619030 | -0.800895 | 1.162621e-48 | -8.615850e-47 |
| Msa0078700 | Msa0631130 | 0.810890 | 9.202059e-51 | -8.615850e-47 |
| Msa0078700 | Msa0637590 | 0.858321 | 8.925418e-63 | -8.615850e-47 |
| Msa0078700 | Msa0658190 | 0.811207 | 7.855869e-51 | -8.615850e-47 |
| Msa0078700 | Msa0669350 | 0.816213 | 6.208077e-52 | -8.615850e-47 |
| Msa0078700 | Msa0684130 | 0.808215 | 3.455085e-50 | -8.615850e-47 |
| Msa0078700 | Msa0703030 | 0.803365 | 3.608988e-49 | -8.615850e-47 |
| Msa0078700 | Msa0709140 | 0.828029 | 1.128341e-54 | -8.615850e-47 |
| Msa0078700 | Msa0723770 | 0.822613 | 2.157187e-53 | -8.615850e-47 |
| Msa0078700 | Msa0744640 | 0.846885 | 1.639983e-59 | -8.615850e-47 |
| Msa0078700 | Msa0804870 | 0.818462 | 1.935731e-52 | -8.615850e-47 |
| Msa0078700 | Msa0833270 | 0.818301 | 2.105482e-52 | -8.615850e-47 |
| Msa0078700 | Msa0841730 | 0.845657 | 3.541892e-59 | -8.615850e-47 |
| Msa0078700 | Msa0870510 | 0.804933 | 1.702736e-49 | -8.615850e-47 |
| Msa0078700 | Msa0905570 | 0.820832 | 5.569149e-53 | -8.615850e-47 |
| Msa0078700 | Msa0925940 | 0.814132 | 1.800357e-51 | -8.615850e-47 |
| Msa0078700 | Msa0966580 | 0.831283 | 1.822409e-55 | -8.615850e-47 |
| Msa0078700 | Msa0966590 | 0.813884 | 2.041711e-51 | -8.615850e-47 |
| Msa0078700 | Msa1007900 | 0.805244 | 1.466069e-49 | -8.615850e-47 |
| Msa0078700 | Msa1019420 | 0.806894 | 6.591248e-50 | -8.615850e-47 |
| Msa0078700 | Msa1030210 | 0.802348 | 5.853679e-49 | -8.615850e-47 |
| Msa0078700 | Msa1035050 | 0.809126 | 2.207803e-50 | -8.615850e-47 |
| Msa0078700 | Msa1074200 | 0.802822 | 4.674027e-49 | -8.615850e-47 |
| Msa0078700 | Msa1075090 | 0.821262 | 4.432248e-53 | -8.615850e-47 |
| Msa0078700 | Msa1077970 | 0.826099 | 3.267482e-54 | -8.615850e-47 |
| Msa0078700 | Msa1084890 | 0.806428 | 8.264183e-50 | -8.615850e-47 |
| Msa0078700 | Msa1092310 | 0.812325 | 4.486826e-51 | -8.615850e-47 |
| Msa0078700 | Msa1107220 | 0.812504 | 4.100949e-51 | -8.615850e-47 |
| Msa0078700 | Msa1114670 | 0.819802 | 9.589543e-53 | -8.615850e-47 |
| Msa0078700 | Msa1119920 | 0.812023 | 5.222614e-51 | -8.615850e-47 |
| Msa0078700 | Msa1120580 | 0.805050 | 1.609146e-49 | -8.615850e-47 |
| Msa0078700 | Msa1133700 | 0.808833 | 2.549807e-50 | -8.615850e-47 |
| Msa0078700 | Msa1136760 | 0.838016 | 3.693264e-57 | -8.615850e-47 |
| Msa0078700 | Msa1137750 | 0.801856 | 7.390295e-49 | -8.615850e-47 |
| Msa0078700 | Msa1157110 | 0.826248 | 3.011067e-54 | -8.615850e-47 |
| Msa0078700 | Msa1159170 | 0.831847 | 1.323678e-55 | -8.615850e-47 |
| Msa0078700 | Msa1173800 | 0.813146 | 2.966963e-51 | -8.615850e-47 |
| Msa0078700 | Msa1202110 | 0.801107 | 1.052486e-48 | -8.615850e-47 |
| Msa0078700 | Msa1202800 | 0.805431 | 1.339113e-49 | -8.615850e-47 |
| Msa0078700 | Msa1203810 | 0.810127 | 1.345046e-50 | -8.615850e-47 |
| Msa0078700 | Msa1238600 | 0.818336 | 2.066722e-52 | -8.615850e-47 |
| Msa0078700 | Msa1254870 | 0.800409 | 1.461133e-48 | -8.615850e-47 |
| Msa0078700 | Msa1255210 | 0.806707 | 7.216957e-50 | -8.615850e-47 |
| Msa0078700 | Msa1256060 | 0.816864 | 4.438019e-52 | -8.615850e-47 |
| Msa0078700 | Msa1295650 | 0.805150 | 1.534092e-49 | -8.615850e-47 |
| Msa0078700 | Msa1306830 | 0.830528 | 2.791192e-55 | -8.615850e-47 |
| Msa0078700 | Msa1307530 | 0.827999 | 1.146882e-54 | -8.615850e-47 |
| Msa0078700 | Msa1315480 | 0.802412 | 5.679701e-49 | -8.615850e-47 |
| Msa0078700 | Msa1328430 | 0.800810 | 1.210431e-48 | -8.615850e-47 |
| Msa0078700 | Msa1389170 | 0.816063 | 6.708589e-52 | -8.615850e-47 |
| Msa0078700 | Msa1395110 | 0.820310 | 7.340331e-53 | -8.615850e-47 |
| Msa0078700 | Msa1395250 | 0.806408 | 8.348323e-50 | -8.615850e-47 |
| Msa0078700 | Msa1398140 | 0.807666 | 4.520795e-50 | -8.615850e-47 |
| Msa0078700 | Msa1404050 | 0.825450 | 4.656164e-54 | -8.615850e-47 |
| Msa0078700 | Msa1405530 | 0.820759 | 5.789454e-53 | -8.615850e-47 |
| Msa0078700 | Msa1455200 | 0.829703 | 4.437188e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078700 | MtrunA17_Chr1g0189401 | 97.442 | 391 | 7 | 1 | 1 | 388 | 1 | 391 | 0.0 | 795 |
| Msa0078700 | MtrunA17_Chr2g0276851 | 55.618 | 356 | 150 | 3 | 36 | 388 | 34 | 384 | 2.39e-148 | 425 |
| Msa0078700 | MtrunA17_Chr2g0281421 | 50.272 | 368 | 161 | 4 | 30 | 388 | 38 | 392 | 5.69e-130 | 379 |
| Msa0078700 | MtrunA17_Chr4g0047961 | 57.556 | 311 | 125 | 3 | 79 | 388 | 60 | 364 | 4.10e-129 | 375 |
| Msa0078700 | MtrunA17_Chr7g0227041 | 42.897 | 359 | 181 | 9 | 26 | 379 | 51 | 390 | 7.96e-87 | 268 |
| Msa0078700 | MtrunA17_Chr3g0123571 | 45.695 | 302 | 145 | 7 | 75 | 376 | 98 | 380 | 8.49e-83 | 258 |
| Msa0078700 | MtrunA17_Chr8g0381611 | 48.148 | 270 | 127 | 6 | 75 | 344 | 89 | 345 | 1.95e-81 | 254 |
| Msa0078700 | MtrunA17_Chr8g0381601 | 44.371 | 302 | 149 | 7 | 75 | 376 | 97 | 379 | 1.08e-80 | 253 |
| Msa0078700 | MtrunA17_Chr4g0028891 | 48.106 | 264 | 122 | 7 | 75 | 337 | 118 | 367 | 1.29e-78 | 248 |
| Msa0078700 | MtrunA17_Chr2g0326801 | 40.597 | 335 | 180 | 8 | 45 | 379 | 64 | 379 | 1.57e-77 | 244 |
| Msa0078700 | MtrunA17_Chr3g0095271 | 59.494 | 79 | 8 | 2 | 217 | 294 | 6 | 61 | 9.63e-21 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078700 | AT4G18530.1 | 56.555 | 389 | 141 | 5 | 20 | 387 | 8 | 389 | 2.08e-155 | 443 |
| Msa0078700 | AT4G18530.3 | 56.555 | 389 | 141 | 5 | 20 | 387 | 3 | 384 | 2.33e-155 | 443 |
| Msa0078700 | AT4G12840.2 | 54.115 | 401 | 159 | 5 | 2 | 388 | 5 | 394 | 4.58e-155 | 442 |
| Msa0078700 | AT4G12840.1 | 53.846 | 403 | 162 | 5 | 1 | 388 | 1 | 394 | 9.11e-155 | 442 |
| Msa0078700 | AT4G12840.3 | 60.518 | 309 | 99 | 4 | 94 | 388 | 1 | 300 | 1.26e-135 | 390 |
| Msa0078700 | AT1G11170.1 | 54.890 | 317 | 129 | 6 | 79 | 386 | 83 | 394 | 2.85e-122 | 361 |
| Msa0078700 | AT1G11170.6 | 54.890 | 317 | 129 | 6 | 79 | 386 | 83 | 394 | 2.85e-122 | 361 |
| Msa0078700 | AT1G11170.5 | 54.890 | 317 | 129 | 6 | 79 | 386 | 83 | 394 | 2.85e-122 | 361 |
| Msa0078700 | AT1G11170.7 | 54.890 | 317 | 129 | 6 | 79 | 386 | 83 | 394 | 2.85e-122 | 361 |
| Msa0078700 | AT4G18530.2 | 55.627 | 311 | 121 | 4 | 13 | 313 | 1 | 304 | 4.88e-122 | 355 |
| Msa0078700 | AT1G61240.8 | 54.430 | 316 | 131 | 4 | 79 | 385 | 13 | 324 | 7.38e-121 | 354 |
| Msa0078700 | AT1G61240.4 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.5 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.6 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.2 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.1 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.3 | 54.430 | 316 | 131 | 4 | 79 | 385 | 80 | 391 | 6.64e-120 | 354 |
| Msa0078700 | AT1G61240.7 | 54.296 | 291 | 123 | 3 | 79 | 369 | 80 | 360 | 1.65e-110 | 328 |
| Msa0078700 | AT1G11170.3 | 56.985 | 272 | 109 | 5 | 79 | 347 | 83 | 349 | 3.60e-110 | 328 |
| Msa0078700 | AT1G11170.4 | 58.462 | 260 | 102 | 4 | 79 | 337 | 83 | 337 | 3.83e-110 | 327 |
| Msa0078700 | AT1G11170.8 | 58.462 | 260 | 102 | 4 | 79 | 337 | 83 | 337 | 3.83e-110 | 327 |
| Msa0078700 | AT1G11170.2 | 57.203 | 236 | 95 | 4 | 79 | 313 | 83 | 313 | 5.93e-96 | 290 |
| Msa0078700 | AT1G67850.4 | 45.902 | 305 | 146 | 7 | 75 | 379 | 85 | 370 | 1.41e-82 | 258 |
| Msa0078700 | AT1G67850.6 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT1G67850.7 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT1G67850.1 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT1G67850.3 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT1G67850.2 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT1G67850.5 | 45.902 | 305 | 146 | 7 | 75 | 379 | 101 | 386 | 2.37e-82 | 258 |
| Msa0078700 | AT3G26440.4 | 41.144 | 367 | 186 | 11 | 16 | 376 | 12 | 354 | 8.74e-82 | 255 |
| Msa0078700 | AT3G26440.1 | 42.330 | 352 | 177 | 11 | 27 | 376 | 51 | 378 | 3.96e-81 | 254 |
| Msa0078700 | AT3G26440.2 | 42.330 | 352 | 177 | 11 | 27 | 376 | 51 | 378 | 3.96e-81 | 254 |
| Msa0078700 | AT3G26440.5 | 42.330 | 352 | 177 | 11 | 27 | 376 | 74 | 401 | 7.57e-81 | 254 |
| Msa0078700 | AT3G26440.6 | 42.330 | 352 | 177 | 11 | 27 | 376 | 74 | 401 | 9.49e-81 | 254 |
| Msa0078700 | AT1G24570.2 | 48.302 | 265 | 124 | 6 | 75 | 338 | 84 | 336 | 1.86e-80 | 252 |
| Msa0078700 | AT3G27470.2 | 39.776 | 357 | 185 | 9 | 27 | 372 | 38 | 375 | 2.70e-80 | 252 |
| Msa0078700 | AT3G27470.1 | 39.776 | 357 | 185 | 9 | 27 | 372 | 38 | 375 | 2.70e-80 | 252 |
| Msa0078700 | AT3G27470.4 | 39.776 | 357 | 185 | 9 | 27 | 372 | 38 | 375 | 2.70e-80 | 252 |
| Msa0078700 | AT3G27470.3 | 39.776 | 357 | 185 | 9 | 27 | 372 | 38 | 375 | 2.70e-80 | 252 |
| Msa0078700 | AT1G13000.2 | 44.918 | 305 | 149 | 7 | 75 | 379 | 105 | 390 | 2.82e-80 | 252 |
| Msa0078700 | AT1G13000.5 | 44.918 | 305 | 149 | 7 | 75 | 379 | 105 | 390 | 2.82e-80 | 252 |
| Msa0078700 | AT1G13000.4 | 44.918 | 305 | 149 | 7 | 75 | 379 | 105 | 390 | 2.82e-80 | 252 |
| Msa0078700 | AT1G13000.1 | 44.918 | 305 | 149 | 7 | 75 | 379 | 105 | 390 | 2.82e-80 | 252 |
| Msa0078700 | AT3G26440.3 | 44.089 | 313 | 155 | 8 | 27 | 337 | 51 | 345 | 5.02e-80 | 250 |
| Msa0078700 | AT3G27470.5 | 39.776 | 357 | 185 | 9 | 27 | 372 | 38 | 375 | 5.68e-80 | 251 |
| Msa0078700 | AT1G08040.3 | 43.092 | 304 | 154 | 7 | 75 | 378 | 84 | 368 | 3.47e-79 | 248 |
| Msa0078700 | AT1G08040.2 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 4.39e-79 | 248 |
| Msa0078700 | AT1G08040.4 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 4.39e-79 | 248 |
| Msa0078700 | AT1G08040.1 | 43.092 | 304 | 154 | 7 | 75 | 378 | 88 | 372 | 4.39e-79 | 248 |
| Msa0078700 | AT2G28310.2 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 6.85e-79 | 248 |
| Msa0078700 | AT2G28310.1 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 6.85e-79 | 248 |
| Msa0078700 | AT2G28310.3 | 43.934 | 305 | 152 | 7 | 75 | 379 | 81 | 366 | 6.85e-79 | 248 |
| Msa0078700 | AT1G24570.1 | 48.092 | 262 | 123 | 6 | 78 | 338 | 80 | 329 | 1.21e-78 | 247 |
| Msa0078700 | AT1G13000.3 | 49.791 | 239 | 108 | 5 | 75 | 313 | 105 | 331 | 1.28e-73 | 233 |
| Msa0078700 | AT1G11170.9 | 56.571 | 175 | 73 | 2 | 79 | 253 | 83 | 254 | 2.30e-65 | 209 |
| Msa0078700 | AT2G25905.1 | 55.833 | 120 | 51 | 2 | 112 | 230 | 109 | 227 | 5.48e-39 | 139 |
Find 94 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGAGCTGAGACCTTTA+TGG | 0.208347 | 1_2:-56363211 | Msa0078700:CDS |
| AAAGATACATTACATAAATA+AGG | 0.289084 | 1_2:-56364038 | Msa0078700:intron |
| CACGCAGCTCTTGAGAAAAC+AGG | 0.313108 | 1_2:+56361794 | None:intergenic |
| TGTTTATATGTAATCTTTCC+AGG | 0.314586 | 1_2:-56363610 | Msa0078700:CDS |
| CGTCAACATTTCCATCATAA+TGG | 0.328792 | 1_2:+56362609 | None:intergenic |
| AGTTGACAAGATGGTCAAAA+AGG | 0.364485 | 1_2:-56362753 | Msa0078700:intron |
| TTGTGTCTGGTACATGATTC+AGG | 0.381583 | 1_2:-56361768 | Msa0078700:intron |
| GCAGGTGATGACTTGATATC+TGG | 0.391084 | 1_2:+56363846 | None:intergenic |
| AGATGTGATTAGAGAGTAGT+TGG | 0.400813 | 1_2:-56360285 | Msa0078700:three_prime_UTR |
| ACATTTAAAGCTGTTATTGA+TGG | 0.400949 | 1_2:-56361966 | Msa0078700:CDS |
| TGCACATGTTGCTATTGAAA+TGG | 0.405863 | 1_2:+56360530 | None:intergenic |
| AGTCTCGAGTACTTCGAGTT+TGG | 0.408882 | 1_2:-56363228 | Msa0078700:CDS |
| ACGTTGGGTCAAGGCGGTTA+AGG | 0.422001 | 1_2:-56360573 | Msa0078700:CDS |
| TTTCAGATGGATAGAAATGA+TGG | 0.430064 | 1_2:-56361819 | Msa0078700:intron |
| GAGCTGCGTGGCGTTGTGTC+TGG | 0.432485 | 1_2:-56361781 | Msa0078700:CDS |
| GTTTCTATTGTCAAAGAAGA+AGG | 0.437319 | 1_2:-56362186 | Msa0078700:CDS |
| TTCAGATTCATCTCAGGAAA+AGG | 0.450344 | 1_2:-56361141 | Msa0078700:CDS |
| AGCTTGTTTGCGATGGCAGT+TGG | 0.451629 | 1_2:-56362794 | Msa0078700:CDS |
| TGCATACTTATGATAGATGC+AGG | 0.458594 | 1_2:-56363392 | Msa0078700:CDS |
| AAAGCTGTTATTGATGGTAA+AGG | 0.462651 | 1_2:-56361960 | Msa0078700:CDS |
| CCATTCTTCGACATCCATAA+AGG | 0.463933 | 1_2:+56363197 | None:intergenic |
| ATCGCAAACAAGCTGGTTGA+TGG | 0.464332 | 1_2:+56362803 | None:intergenic |
| CATATAGCGGTAGTCGATCA+AGG | 0.469047 | 1_2:-56362551 | Msa0078700:CDS |
| TGGAAGTGAAGCGTTACCTC+AGG | 0.471212 | 1_2:-56363255 | Msa0078700:CDS |
| GGGTATTGTACATACTTCTC+CGG | 0.472454 | 1_2:+56362325 | None:intergenic |
| CACTACAATCGTCCCACACT+TGG | 0.476500 | 1_2:-56361300 | Msa0078700:CDS |
| GCAGCTTGGCTACTGTTCTC+AGG | 0.478528 | 1_2:-56361628 | Msa0078700:intron |
| ACGAATGGAAGAAATTCAAA+TGG | 0.484655 | 1_2:-56362589 | Msa0078700:CDS |
| GCAGGTTTCAGATTCATCTC+AGG | 0.487141 | 1_2:-56361147 | Msa0078700:intron |
| GTTATCTGTGCCTCCAAGTG+TGG | 0.495561 | 1_2:+56361287 | None:intergenic |
| TCATACTCAGCAACTATGTC+GGG | 0.496770 | 1_2:+56362394 | None:intergenic |
| AGTTGGTTGACGAAAGGAGC+GGG | 0.499875 | 1_2:+56364082 | None:intergenic |
| TTTATTCAATAAGGTTTGAA+GGG | 0.502550 | 1_2:-56360330 | Msa0078700:three_prime_UTR |
| CGGTTAAGGAGGATAAATGT+TGG | 0.503478 | 1_2:-56360559 | Msa0078700:CDS |
| TTTCTATTGTCAAAGAAGAA+GGG | 0.503868 | 1_2:-56362185 | Msa0078700:CDS |
| ACAAATAATAAAAGTGCCCC+TGG | 0.506618 | 1_2:+56363592 | None:intergenic |
| ATCAAATTACCGCACGTGGC+AGG | 0.508621 | 1_2:-56362113 | Msa0078700:CDS |
| CGGTAGTCGATCAAGGCAAA+TGG | 0.509396 | 1_2:-56362544 | Msa0078700:intron |
| ATATCAAGTCATCACCTGCT+AGG | 0.510981 | 1_2:-56363842 | Msa0078700:CDS |
| GAAAGATTTAGTTGACAAGA+TGG | 0.516750 | 1_2:-56362762 | Msa0078700:CDS |
| TTGTTTAGTAGAAGCAGTGC+AGG | 0.518852 | 1_2:-56363283 | Msa0078700:intron |
| CAATTGAGACAACGACACTT+TGG | 0.519088 | 1_2:-56360405 | Msa0078700:three_prime_UTR |
| TACAATCGTCCCACACTTGG+AGG | 0.519192 | 1_2:-56361297 | Msa0078700:CDS |
| ATCATACTCAGCAACTATGT+CGG | 0.519378 | 1_2:+56362393 | None:intergenic |
| AGCACAGCTCCTCCTTGCAC+CGG | 0.522368 | 1_2:-56361924 | Msa0078700:CDS |
| GACACTTTGGAGAGTCTCAA+AGG | 0.530785 | 1_2:-56360392 | Msa0078700:three_prime_UTR |
| AAGAGGTTACGTACCCTAGC+AGG | 0.533358 | 1_2:+56363828 | None:intergenic |
| ATCAACCAGCTTGTTTGCGA+TGG | 0.533527 | 1_2:-56362801 | Msa0078700:CDS |
| GTTTATATGTAATCTTTCCA+GGG | 0.534679 | 1_2:-56363609 | Msa0078700:CDS |
| AACTGCCATCGCAAACAAGC+TGG | 0.536102 | 1_2:+56362796 | None:intergenic |
| GTCGGGATGTAAGAAACGCT+TGG | 0.539017 | 1_2:+56362411 | None:intergenic |
| TCTCAAAGGGCATCATGGTA+TGG | 0.542653 | 1_2:-56360378 | Msa0078700:three_prime_UTR |
| GGTTAAGGAGGATAAATGTT+GGG | 0.545766 | 1_2:-56360558 | Msa0078700:CDS |
| CCTTTATGGATGTCGAAGAA+TGG | 0.547576 | 1_2:-56363197 | Msa0078700:CDS |
| TTAATTATTTACCCGGTGCA+AGG | 0.552167 | 1_2:+56361912 | None:intergenic |
| TTAAAGGTAAGAGAGAGAGT+TGG | 0.554725 | 1_2:+56364065 | None:intergenic |
| ACACTTTGGAGAGTCTCAAA+GGG | 0.567874 | 1_2:-56360391 | Msa0078700:three_prime_UTR |
| GAGAGTCTCAAAGGGCATCA+TGG | 0.568772 | 1_2:-56360383 | Msa0078700:three_prime_UTR |
| TATCAAGTCATCACCTGCTA+GGG | 0.571345 | 1_2:-56363841 | Msa0078700:intron |
| GCACAGCTCCTCCTTGCACC+GGG | 0.572784 | 1_2:-56361923 | Msa0078700:intron |
| TAGAAGCAGTGCAGGCCTAG+TGG | 0.573391 | 1_2:-56363275 | Msa0078700:CDS |
| GCATATCTAGTCCCCACGCA+TGG | 0.583645 | 1_2:+56361649 | None:intergenic |
| ATTGATGGTAAAGGCTGTGA+TGG | 0.584608 | 1_2:-56361951 | Msa0078700:CDS |
| GGTAAGGAGACTTTCTTACA+AGG | 0.584746 | 1_2:-56360615 | Msa0078700:CDS |
| GATGACTTGATATCTGGCAT+TGG | 0.586247 | 1_2:+56363852 | None:intergenic |
| GAACGACTTGATCCATGCGT+GGG | 0.589877 | 1_2:-56361661 | Msa0078700:CDS |
| GGTATTGTACATACTTCTCC+GGG | 0.590332 | 1_2:+56362326 | None:intergenic |
| ACGCAGCTCTTGAGAAAACA+GGG | 0.591560 | 1_2:+56361795 | None:intergenic |
| TTTATATGTAATCTTTCCAG+GGG | 0.591637 | 1_2:-56363608 | Msa0078700:CDS |
| AGAGAGAGTTGGTTGACGAA+AGG | 0.597733 | 1_2:+56364076 | None:intergenic |
| TTATCTGTGCCTCCAAGTGT+GGG | 0.600718 | 1_2:+56361288 | None:intergenic |
| TTGGGTCAAGGCGGTTAAGG+AGG | 0.601086 | 1_2:-56360570 | Msa0078700:CDS |
| GGAAGTGAAGCGTTACCTCA+GGG | 0.611369 | 1_2:-56363254 | Msa0078700:CDS |
| CATCATCAAATTACCGCACG+TGG | 0.611677 | 1_2:-56362117 | Msa0078700:CDS |
| TTCCTTTGGGATGAGGACCT+AGG | 0.614499 | 1_2:-56362364 | Msa0078700:CDS |
| GCAGGAGGTCAAAAGTGCAT+AGG | 0.622144 | 1_2:-56362095 | Msa0078700:intron |
| CTCCTAGGTCCTCATCCCAA+AGG | 0.625352 | 1_2:+56362362 | None:intergenic |
| ATGATGGAAATGTTGACGAA+TGG | 0.626266 | 1_2:-56362604 | Msa0078700:CDS |
| ATACTCACAAAGCTACAAAG+AGG | 0.632222 | 1_2:-56363545 | Msa0078700:intron |
| TGATGATGTCGTTCATATAG+CGG | 0.641214 | 1_2:-56362564 | Msa0078700:CDS |
| AGAACGACTTGATCCATGCG+TGG | 0.644784 | 1_2:-56361662 | Msa0078700:CDS |
| TGGGGACTAGATATGCAGCT+TGG | 0.650458 | 1_2:-56361642 | Msa0078700:CDS |
| AAATTACCGCACGTGGCAGG+AGG | 0.653549 | 1_2:-56362110 | Msa0078700:CDS |
| ATTATTTACCCGGTGCAAGG+AGG | 0.658449 | 1_2:+56361915 | None:intergenic |
| GCATACTTATGATAGATGCA+GGG | 0.660134 | 1_2:-56363391 | Msa0078700:intron |
| ATTGTAGTGAATAATGTACT+CGG | 0.667033 | 1_2:+56361314 | None:intergenic |
| GGAGCGGGAAGCGAAAATCA+CGG | 0.672264 | 1_2:+56364097 | None:intergenic |
| AGGAGTAGAAAACTTCCACC+CGG | 0.686373 | 1_2:-56362344 | Msa0078700:CDS |
| AACGACTTGATCCATGCGTG+GGG | 0.688349 | 1_2:-56361660 | Msa0078700:CDS |
| GGTAACGCTTCACTTCCACT+AGG | 0.692454 | 1_2:+56363260 | None:intergenic |
| CGCAGCTCTTGAGAAAACAG+GGG | 0.701745 | 1_2:+56361796 | None:intergenic |
| GAGTTGGTTGACGAAAGGAG+CGG | 0.706326 | 1_2:+56364081 | None:intergenic |
| ATTGTACATACTTCTCCGGG+TGG | 0.713746 | 1_2:+56362329 | None:intergenic |
| GTACTCGAGACTATACCCTG+AGG | 0.801494 | 1_2:+56363239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTAAATAATATAATT+AGG | + | chr1_2:56364099-56364118 | None:intergenic | 0.0% |
| !! | TAAGAATATATGAAAAAAAT+AGG | - | chr1_2:56360556-56360575 | Msa0078700:CDS | 10.0% |
| !!! | TTTCTATTTTTGATATTATA+AGG | - | chr1_2:56360601-56360620 | Msa0078700:CDS | 10.0% |
| !!! | TAATGTATCTTTTTGTTTAA+AGG | + | chr1_2:56360263-56360282 | None:intergenic | 15.0% |
| !! | AAAGATACATTACATAAATA+AGG | - | chr1_2:56360271-56360290 | Msa0078700:three_prime_UTR | 15.0% |
| !!! | TTTTTCCTTTATGATTTTAA+AGG | - | chr1_2:56362097-56362116 | Msa0078700:CDS | 15.0% |
| !! | TATATATGATCATTATCATT+CGG | - | chr1_2:56362725-56362744 | Msa0078700:intron | 15.0% |
| !! | TAAAAAATTATATTCTGTGT+TGG | + | chr1_2:56363461-56363480 | None:intergenic | 15.0% |
| !!! | TATCACATTTTTATTCAATA+AGG | - | chr1_2:56363970-56363989 | Msa0078700:intron | 15.0% |
| !! | TAACGTAATTCAAATTCATA+AGG | + | chr1_2:56360315-56360334 | None:intergenic | 20.0% |
| !!! | GGAATCAAAATTTTTGATAT+AGG | - | chr1_2:56360577-56360596 | Msa0078700:CDS | 20.0% |
| !!! | TTTGTTTTCTCTTAATACTT+TGG | - | chr1_2:56360941-56360960 | Msa0078700:intron | 20.0% |
| !!! | TTGTTTTCTCTTAATACTTT+GGG | - | chr1_2:56360942-56360961 | Msa0078700:intron | 20.0% |
| !!! | AGTGATGAAGATTTTAAATA+CGG | + | chr1_2:56361346-56361365 | None:intergenic | 20.0% |
| !! | CAAATTATAAAAGACTACAA+TGG | + | chr1_2:56361439-56361458 | None:intergenic | 20.0% |
| !! | AGTATTAGTAATGAGAAATT+TGG | + | chr1_2:56361602-56361621 | None:intergenic | 20.0% |
| !! | GATATTCAAAAATTGGATAT+GGG | + | chr1_2:56361834-56361853 | None:intergenic | 20.0% |
| !! | TGATATTCAAAAATTGGATA+TGG | + | chr1_2:56361835-56361854 | None:intergenic | 20.0% |
| !! | GATAAGTGATATTCAAAAAT+TGG | + | chr1_2:56361841-56361860 | None:intergenic | 20.0% |
| !!! | AGTATGATTATATTTTCCTT+TGG | - | chr1_2:56361931-56361950 | Msa0078700:CDS | 20.0% |
| !!! | GTATGATTATATTTTCCTTT+GGG | - | chr1_2:56361932-56361951 | Msa0078700:CDS | 20.0% |
| !!! | TTAATTTTCCAAAACCATTA+AGG | - | chr1_2:56362058-56362077 | Msa0078700:intron | 20.0% |
| !!! | ACATACCTTTAAAATCATAA+AGG | + | chr1_2:56362105-56362124 | None:intergenic | 20.0% |
| !! | CCAAAAATTAATTATTTACC+CGG | + | chr1_2:56362407-56362426 | None:intergenic | 20.0% |
| !! | TTGATTATGTATGATCAATA+GGG | - | chr1_2:56362940-56362959 | Msa0078700:intron | 20.0% |
| !! | ATTAATGTCACTAAGATAAA+AGG | - | chr1_2:56363236-56363255 | Msa0078700:CDS | 20.0% |
| !! | AATGAAATGAATATTGAATG+AGG | + | chr1_2:56363299-56363318 | None:intergenic | 20.0% |
| !!! | GTGTGACTAATATATTATTT+TGG | - | chr1_2:56363661-56363680 | Msa0078700:intron | 20.0% |
| !!! | TGACTAATATATTATTTTGG+AGG | - | chr1_2:56363664-56363683 | Msa0078700:intron | 20.0% |
| !!! | GACTAATATATTATTTTGGA+GGG | - | chr1_2:56363665-56363684 | Msa0078700:intron | 20.0% |
| !!! | ACTAATATATTATTTTGGAG+GGG | - | chr1_2:56363666-56363685 | Msa0078700:intron | 20.0% |
| !!! | TAGATATTTTCAAAAAACGT+TGG | - | chr1_2:56363720-56363739 | Msa0078700:intron | 20.0% |
| !!! | AGATATTTTCAAAAAACGTT+GGG | - | chr1_2:56363721-56363740 | Msa0078700:intron | 20.0% |
| !!! | TTTTATTCAATAAGGTTTGA+AGG | - | chr1_2:56363978-56363997 | Msa0078700:intron | 20.0% |
| !! | TTTATTCAATAAGGTTTGAA+GGG | - | chr1_2:56363979-56363998 | Msa0078700:intron | 20.0% |
| !!! | TCTTTGAGAAAATTTCTTTA+AGG | - | chr1_2:56364071-56364090 | Msa0078700:five_prime_UTR | 20.0% |
| ! | AGACGGTTATAAAAATTGAA+AGG | + | chr1_2:56360515-56360534 | None:intergenic | 25.0% |
| ! | TTCATTGCATAATAACAAGA+CGG | + | chr1_2:56360532-56360551 | None:intergenic | 25.0% |
| ! | TGTTTATATGTAATCTTTCC+AGG | - | chr1_2:56360699-56360718 | Msa0078700:intron | 25.0% |
| ! | GTTTATATGTAATCTTTCCA+GGG | - | chr1_2:56360700-56360719 | Msa0078700:intron | 25.0% |
| ! | TTTATATGTAATCTTTCCAG+GGG | - | chr1_2:56360701-56360720 | Msa0078700:intron | 25.0% |
| ! | TGTTCTTCCAAATTTCTAAA+TGG | - | chr1_2:56360830-56360849 | Msa0078700:intron | 25.0% |
| ! | AAACTATCAAGCTTCAAAAA+TGG | - | chr1_2:56360880-56360899 | Msa0078700:intron | 25.0% |
| !!! | GTGTATTATTTTGGATGTTT+AGG | - | chr1_2:56360980-56360999 | Msa0078700:intron | 25.0% |
| !!! | TTATTTTGGATGTTTAGGTT+TGG | - | chr1_2:56360985-56361004 | Msa0078700:intron | 25.0% |
| !!! | TCTAAGAAGTTTTTTCTTCA+TGG | + | chr1_2:56361206-56361225 | None:intergenic | 25.0% |
| ! | ATCTTCATCACTATAACATA+TGG | - | chr1_2:56361354-56361373 | Msa0078700:intron | 25.0% |
| ! | TTGGACAAAAAACTCATTAA+AGG | + | chr1_2:56361583-56361602 | None:intergenic | 25.0% |
| ! | TGATTAAGCGAAACTAAAAA+GGG | + | chr1_2:56362008-56362027 | None:intergenic | 25.0% |
| ! | AATCACAATCATATAACGTT+TGG | - | chr1_2:56362023-56362042 | Msa0078700:intron | 25.0% |
| ! | TTTCTATTGTCAAAGAAGAA+GGG | - | chr1_2:56362124-56362143 | Msa0078700:CDS | 25.0% |
| !! | ACATTTAAAGCTGTTATTGA+TGG | - | chr1_2:56362343-56362362 | Msa0078700:CDS | 25.0% |
| !! | CCGGGTAAATAATTAATTTT+TGG | - | chr1_2:56362404-56362423 | Msa0078700:CDS | 25.0% |
| ! | CTTCAACTGCATAAAATTAA+GGG | + | chr1_2:56362453-56362472 | None:intergenic | 25.0% |
| ! | TCTTCAACTGCATAAAATTA+AGG | + | chr1_2:56362454-56362473 | None:intergenic | 25.0% |
| !!! | ATGAACTAATTTGTTTCAGA+TGG | - | chr1_2:56362477-56362496 | Msa0078700:intron | 25.0% |
| !! | ACATTTTTGTTCATCATTTG+CGG | - | chr1_2:56362614-56362633 | Msa0078700:CDS | 25.0% |
| ! | AACGAATAACTATTGTGTAA+CGG | - | chr1_2:56362864-56362883 | Msa0078700:intron | 25.0% |
| ! | CTATTGATCATACATAATCA+AGG | + | chr1_2:56362941-56362960 | None:intergenic | 25.0% |
| ! | CTTGATTATGTATGATCAAT+AGG | - | chr1_2:56362939-56362958 | Msa0078700:intron | 25.0% |
| ! | ATTGTAGTGAATAATGTACT+CGG | + | chr1_2:56362998-56363017 | None:intergenic | 25.0% |
| !! | AGATAAAAGGACATTCATTT+TGG | - | chr1_2:56363249-56363268 | Msa0078700:CDS | 25.0% |
| !! | TTTTCAAAGAGAATATGATC+TGG | + | chr1_2:56363345-56363364 | None:intergenic | 25.0% |
| !! | TTTGAAAAAACTTGTCCTTT+TGG | - | chr1_2:56363357-56363376 | Msa0078700:intron | 25.0% |
| !! | TTGAAAAAACTTGTCCTTTT+GGG | - | chr1_2:56363358-56363377 | Msa0078700:intron | 25.0% |
| !!! | CTATTAGTCATTTTCATTGA+GGG | + | chr1_2:56363506-56363525 | None:intergenic | 25.0% |
| ! | TTGAAGAAGAATCTCAAATA+TGG | + | chr1_2:56363545-56363564 | None:intergenic | 25.0% |
| !!! | CTAATATATTATTTTGGAGG+GGG | - | chr1_2:56363667-56363686 | Msa0078700:intron | 25.0% |
| ATTGAAAGGAAGAAAAGAAG+AGG | + | chr1_2:56360501-56360520 | None:intergenic | 30.0% | |
| TGCTTCAAAACACAAATTCA+AGG | + | chr1_2:56360645-56360664 | None:intergenic | 30.0% | |
| !!! | AATTTGTGTTTTGAAGCAGA+CGG | - | chr1_2:56360647-56360666 | Msa0078700:intron | 30.0% |
| ! | GGAAGAACACAAATTTTACT+CGG | + | chr1_2:56360819-56360838 | None:intergenic | 30.0% |
| CTTCCAAATTTCTAAATGGT+TGG | - | chr1_2:56360834-56360853 | Msa0078700:intron | 30.0% | |
| GAACCAACCATTTAGAAATT+TGG | + | chr1_2:56360840-56360859 | None:intergenic | 30.0% | |
| ACAATAGACAGAAATTTGAG+TGG | + | chr1_2:56361178-56361197 | None:intergenic | 30.0% | |
| TTCTTAGAGTAGTTAGTGTA+AGG | - | chr1_2:56361218-56361237 | Msa0078700:intron | 30.0% | |
| ! | TGTTATTTGTGTTTCTTCTG+TGG | - | chr1_2:56361256-56361275 | Msa0078700:intron | 30.0% |
| ATTGTTTCATCGCATTATCA+AGG | - | chr1_2:56361308-56361327 | Msa0078700:CDS | 30.0% | |
| GAAAGATTTAGTTGACAAGA+TGG | - | chr1_2:56361547-56361566 | Msa0078700:intron | 30.0% | |
| CTAATACTCTGTTTAATCCA+TGG | - | chr1_2:56361614-56361633 | Msa0078700:intron | 30.0% | |
| ACGAATGGAAGAAATTCAAA+TGG | - | chr1_2:56361720-56361739 | Msa0078700:intron | 30.0% | |
| TGTGAAAACTGAAATCACTT+AGG | + | chr1_2:56361804-56361823 | None:intergenic | 30.0% | |
| !!! | TTATATTTTCCTTTGGGATG+AGG | - | chr1_2:56361938-56361957 | Msa0078700:CDS | 30.0% |
| GATTAAGCGAAACTAAAAAG+GGG | + | chr1_2:56362007-56362026 | None:intergenic | 30.0% | |
| GTGATTAAGCGAAACTAAAA+AGG | + | chr1_2:56362009-56362028 | None:intergenic | 30.0% | |
| !! | CATATAACGTTTGGTTCTAT+TGG | - | chr1_2:56362032-56362051 | Msa0078700:intron | 30.0% |
| ! | ACACTAATCCTTAATGGTTT+TGG | + | chr1_2:56362069-56362088 | None:intergenic | 30.0% |
| TGTCAAACACTAATCCTTAA+TGG | + | chr1_2:56362075-56362094 | None:intergenic | 30.0% | |
| GTTTCTATTGTCAAAGAAGA+AGG | - | chr1_2:56362123-56362142 | Msa0078700:CDS | 30.0% | |
| CAGATACAGAAATGCAATTA+TGG | + | chr1_2:56362244-56362263 | None:intergenic | 30.0% | |
| ! | AAAGCTGTTATTGATGGTAA+AGG | - | chr1_2:56362349-56362368 | Msa0078700:CDS | 30.0% |
| TTTCAGATGGATAGAAATGA+TGG | - | chr1_2:56362490-56362509 | Msa0078700:intron | 30.0% | |
| ! | ATTTTGCTTTCAGTTTCATC+TGG | - | chr1_2:56362803-56362822 | Msa0078700:CDS | 30.0% |
| ! | TTTTGCTTTCAGTTTCATCT+GGG | - | chr1_2:56362804-56362823 | Msa0078700:CDS | 30.0% |
| ! | TAAAAGGACATTCATTTTGG+TGG | - | chr1_2:56363252-56363271 | Msa0078700:CDS | 30.0% |
| ! | AGGATGAGTACTAGTATTTT+TGG | + | chr1_2:56363279-56363298 | None:intergenic | 30.0% |
| !! | TTATATTCTGTGTTGGCTAA+TGG | + | chr1_2:56363454-56363473 | None:intergenic | 30.0% |
| !! | GCTATTAGTCATTTTCATTG+AGG | + | chr1_2:56363507-56363526 | None:intergenic | 30.0% |
| TCTCAAATATGGAAGCTAAT+TGG | + | chr1_2:56363534-56363553 | None:intergenic | 30.0% | |
| TTAAAGGTAAGAGAGAGAGT+TGG | + | chr1_2:56360247-56360266 | None:intergenic | 35.0% | |
| !! | ACAAATAATAAAAGTGCCCC+TGG | + | chr1_2:56360720-56360739 | None:intergenic | 35.0% |
| ATACTCACAAAGCTACAAAG+AGG | - | chr1_2:56360764-56360783 | Msa0078700:intron | 35.0% | |
| TCAAGCTTCAAAAATGGTGT+AGG | - | chr1_2:56360886-56360905 | Msa0078700:intron | 35.0% | |
| TGCATACTTATGATAGATGC+AGG | - | chr1_2:56360917-56360936 | Msa0078700:intron | 35.0% | |
| GCATACTTATGATAGATGCA+GGG | - | chr1_2:56360918-56360937 | Msa0078700:intron | 35.0% | |
| ! | CTCGTGATCGTGTATTATTT+TGG | - | chr1_2:56360971-56360990 | Msa0078700:intron | 35.0% |
| ACAGAAATTTGAGTGGTGAA+GGG | + | chr1_2:56361171-56361190 | None:intergenic | 35.0% | |
| ATGAAACAATCAGTCCTCTT+GGG | + | chr1_2:56361298-56361317 | None:intergenic | 35.0% | |
| CTAATTGTTCACATTTGAGC+AGG | - | chr1_2:56361472-56361491 | Msa0078700:intron | 35.0% | |
| AGTTGACAAGATGGTCAAAA+AGG | - | chr1_2:56361556-56361575 | Msa0078700:intron | 35.0% | |
| !! | TGCAATTTGGTGTAGAAAGA+GGG | + | chr1_2:56361647-56361666 | None:intergenic | 35.0% |
| ! | ACTTGCTAGAAACTGCAATT+TGG | + | chr1_2:56361660-56361679 | None:intergenic | 35.0% |
| CGTCAACATTTCCATCATAA+TGG | + | chr1_2:56361703-56361722 | None:intergenic | 35.0% | |
| ! | ATGATGGAAATGTTGACGAA+TGG | - | chr1_2:56361705-56361724 | Msa0078700:intron | 35.0% |
| ! | TGATGATGTCGTTCATATAG+CGG | - | chr1_2:56361745-56361764 | Msa0078700:intron | 35.0% |
| !! | TGTGCTTGTTTTCAATGACT+AGG | - | chr1_2:56361868-56361887 | Msa0078700:intron | 35.0% |
| ATCATACTCAGCAACTATGT+CGG | + | chr1_2:56361919-56361938 | None:intergenic | 35.0% | |
| AGCACTTGATCCTAAAAAGT+CGG | - | chr1_2:56362164-56362183 | Msa0078700:CDS | 35.0% | |
| ! | TGATGAACTTCCGACTTTTT+AGG | + | chr1_2:56362177-56362196 | None:intergenic | 35.0% |
| TTCGATAGTACTCACATCTA+TGG | - | chr1_2:56362289-56362308 | Msa0078700:intron | 35.0% | |
| TTAATTATTTACCCGGTGCA+AGG | + | chr1_2:56362400-56362419 | None:intergenic | 35.0% | |
| TTGGCAATGACAATTCAATG+TGG | - | chr1_2:56362423-56362442 | Msa0078700:intron | 35.0% | |
| ! | ATCGCACTGATGAAACAAAA+TGG | + | chr1_2:56362571-56362590 | None:intergenic | 35.0% |
| TTTGCTTTCAGTTTCATCTG+GGG | - | chr1_2:56362805-56362824 | Msa0078700:CDS | 35.0% | |
| !! | GTCAGAAGTTTTGTCAATCA+TGG | + | chr1_2:56362919-56362938 | None:intergenic | 35.0% |
| GGTGATCGAACAAAAAATGT+TGG | - | chr1_2:56362961-56362980 | Msa0078700:intron | 35.0% | |
| ! | TAAACTGTTACTTGCATTGC+AGG | - | chr1_2:56363144-56363163 | Msa0078700:intron | 35.0% |
| TTCAGATTCATCTCAGGAAA+AGG | - | chr1_2:56363168-56363187 | Msa0078700:intron | 35.0% | |
| ! | AAAAAACTTGTCCTTTTGGG+TGG | - | chr1_2:56363361-56363380 | Msa0078700:intron | 35.0% |
| TTTCAAAAAACGTTGGGTCA+AGG | - | chr1_2:56363727-56363746 | Msa0078700:intron | 35.0% | |
| GGTTAAGGAGGATAAATGTT+GGG | - | chr1_2:56363751-56363770 | Msa0078700:intron | 35.0% | |
| ! | TGCACATGTTGCTATTGAAA+TGG | + | chr1_2:56363782-56363801 | None:intergenic | 35.0% |
| AGATGTGATTAGAGAGTAGT+TGG | - | chr1_2:56364024-56364043 | Msa0078700:intron | 35.0% | |
| GATGACTTGATATCTGGCAT+TGG | + | chr1_2:56360460-56360479 | None:intergenic | 40.0% | |
| ATATCAAGTCATCACCTGCT+AGG | - | chr1_2:56360467-56360486 | Msa0078700:three_prime_UTR | 40.0% | |
| TATCAAGTCATCACCTGCTA+GGG | - | chr1_2:56360468-56360487 | Msa0078700:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGAAGCAGACGGTTT+TGG | - | chr1_2:56360653-56360672 | Msa0078700:intron | 40.0% |
| TTGTTTAGTAGAAGCAGTGC+AGG | - | chr1_2:56361026-56361045 | Msa0078700:intron | 40.0% | |
| CCATTCTTCGACATCCATAA+AGG | + | chr1_2:56361115-56361134 | None:intergenic | 40.0% | |
| CCTTTATGGATGTCGAAGAA+TGG | - | chr1_2:56361112-56361131 | Msa0078700:intron | 40.0% | |
| GACAGAAATTTGAGTGGTGA+AGG | + | chr1_2:56361172-56361191 | None:intergenic | 40.0% | |
| GATGAAACAATCAGTCCTCT+TGG | + | chr1_2:56361299-56361318 | None:intergenic | 40.0% | |
| GTTCACATTTGAGCAGGTTA+AGG | - | chr1_2:56361478-56361497 | Msa0078700:intron | 40.0% | |
| !! | CTGCAATTTGGTGTAGAAAG+AGG | + | chr1_2:56361648-56361667 | None:intergenic | 40.0% |
| ! | GTGACGCTTTTCCATTATGA+TGG | - | chr1_2:56361689-56361708 | Msa0078700:intron | 40.0% |
| !! | GCTTGTTTTCAATGACTAGG+TGG | - | chr1_2:56361871-56361890 | Msa0078700:intron | 40.0% |
| TCATACTCAGCAACTATGTC+GGG | + | chr1_2:56361918-56361937 | None:intergenic | 40.0% | |
| GGTATTGTACATACTTCTCC+GGG | + | chr1_2:56361986-56362005 | None:intergenic | 40.0% | |
| ! | GGGTATTGTACATACTTCTC+CGG | + | chr1_2:56361987-56362006 | None:intergenic | 40.0% |
| !!! | GACTTTTTAGGATCAAGTGC+TGG | + | chr1_2:56362165-56362184 | None:intergenic | 40.0% |
| ! | ATACTTTTCGTTGTGCTCAC+AGG | - | chr1_2:56362317-56362336 | Msa0078700:intron | 40.0% |
| ! | ATTGATGGTAAAGGCTGTGA+TGG | - | chr1_2:56362358-56362377 | Msa0078700:CDS | 40.0% |
| TTGTGTCTGGTACATGATTC+AGG | - | chr1_2:56362541-56362560 | Msa0078700:intron | 40.0% | |
| ! | CATCTGGGGTTGTTAAATAG+CGG | - | chr1_2:56362819-56362838 | Msa0078700:intron | 40.0% |
| CTATTGCACCAAACTCTAGA+AGG | + | chr1_2:56363431-56363450 | None:intergenic | 40.0% | |
| GGTAAGGAGACTTTCTTACA+AGG | - | chr1_2:56363694-56363713 | Msa0078700:intron | 40.0% | |
| CGGTTAAGGAGGATAAATGT+TGG | - | chr1_2:56363750-56363769 | Msa0078700:intron | 40.0% | |
| CAATTGAGACAACGACACTT+TGG | - | chr1_2:56363904-56363923 | Msa0078700:intron | 40.0% | |
| ! | ACACTTTGGAGAGTCTCAAA+GGG | - | chr1_2:56363918-56363937 | Msa0078700:intron | 40.0% |
| ! | AGAGAGAGTTGGTTGACGAA+AGG | + | chr1_2:56360236-56360255 | None:intergenic | 45.0% |
| GCAGGTGATGACTTGATATC+TGG | + | chr1_2:56360466-56360485 | None:intergenic | 45.0% | |
| ! | AGTCTCGAGTACTTCGAGTT+TGG | - | chr1_2:56361081-56361100 | Msa0078700:intron | 45.0% |
| ! | GTTTGGAGCTGAGACCTTTA+TGG | - | chr1_2:56361098-56361117 | Msa0078700:intron | 45.0% |
| ATCGCAAACAAGCTGGTTGA+TGG | + | chr1_2:56361509-56361528 | None:intergenic | 45.0% | |
| ! | ATCAACCAGCTTGTTTGCGA+TGG | - | chr1_2:56361508-56361527 | Msa0078700:intron | 45.0% |
| AGAAAGAGGGTCATGATCCA+TGG | + | chr1_2:56361634-56361653 | None:intergenic | 45.0% | |
| CATATAGCGGTAGTCGATCA+AGG | - | chr1_2:56361758-56361777 | Msa0078700:intron | 45.0% | |
| ! | GGTGGAAGTTTTCTACTCCT+AGG | + | chr1_2:56361965-56361984 | None:intergenic | 45.0% |
| AGGAGTAGAAAACTTCCACC+CGG | - | chr1_2:56361965-56361984 | Msa0078700:CDS | 45.0% | |
| ATTGTACATACTTCTCCGGG+TGG | + | chr1_2:56361983-56362002 | None:intergenic | 45.0% | |
| CATCATCAAATTACCGCACG+TGG | - | chr1_2:56362192-56362211 | Msa0078700:CDS | 45.0% | |
| ATTATTTACCCGGTGCAAGG+AGG | + | chr1_2:56362397-56362416 | None:intergenic | 45.0% | |
| ACGCAGCTCTTGAGAAAACA+GGG | + | chr1_2:56362517-56362536 | None:intergenic | 45.0% | |
| TTATCTGTGCCTCCAAGTGT+GGG | + | chr1_2:56363024-56363043 | None:intergenic | 45.0% | |
| GCAGGTTTCAGATTCATCTC+AGG | - | chr1_2:56363162-56363181 | Msa0078700:intron | 45.0% | |
| !! | TTCCTGCACCTTCTAGAGTT+TGG | - | chr1_2:56363420-56363439 | Msa0078700:CDS | 45.0% |
| !!! | TATTATTTTGGAGGGGGTGC+AGG | - | chr1_2:56363673-56363692 | Msa0078700:intron | 45.0% |
| CAAAAAACGTTGGGTCAAGG+CGG | - | chr1_2:56363730-56363749 | Msa0078700:intron | 45.0% | |
| ! | GACACTTTGGAGAGTCTCAA+AGG | - | chr1_2:56363917-56363936 | Msa0078700:intron | 45.0% |
| !! | TCTCAAAGGGCATCATGGTA+TGG | - | chr1_2:56363931-56363950 | Msa0078700:intron | 45.0% |
| AGTTGGTTGACGAAAGGAGC+GGG | + | chr1_2:56360230-56360249 | None:intergenic | 50.0% | |
| ! | GAGTTGGTTGACGAAAGGAG+CGG | + | chr1_2:56360231-56360250 | None:intergenic | 50.0% |
| AAGAGGTTACGTACCCTAGC+AGG | + | chr1_2:56360484-56360503 | None:intergenic | 50.0% | |
| GGTAACGCTTCACTTCCACT+AGG | + | chr1_2:56361052-56361071 | None:intergenic | 50.0% | |
| ! | TGGAAGTGAAGCGTTACCTC+AGG | - | chr1_2:56361054-56361073 | Msa0078700:intron | 50.0% |
| ! | GGAAGTGAAGCGTTACCTCA+GGG | - | chr1_2:56361055-56361074 | Msa0078700:intron | 50.0% |
| GTACTCGAGACTATACCCTG+AGG | + | chr1_2:56361073-56361092 | None:intergenic | 50.0% | |
| CTTCTGTGGTCGTAATCCTC+CGG | - | chr1_2:56361270-56361289 | Msa0078700:intron | 50.0% | |
| CAATCAGTCCTCTTGGGAAC+CGG | + | chr1_2:56361292-56361311 | None:intergenic | 50.0% | |
| AACTGCCATCGCAAACAAGC+TGG | + | chr1_2:56361516-56361535 | None:intergenic | 50.0% | |
| ! | AGCTTGTTTGCGATGGCAGT+TGG | - | chr1_2:56361515-56361534 | Msa0078700:intron | 50.0% |
| CGGTAGTCGATCAAGGCAAA+TGG | - | chr1_2:56361765-56361784 | Msa0078700:intron | 50.0% | |
| GTCGGGATGTAAGAAACGCT+TGG | + | chr1_2:56361901-56361920 | None:intergenic | 50.0% | |
| !! | TTCCTTTGGGATGAGGACCT+AGG | - | chr1_2:56361945-56361964 | Msa0078700:CDS | 50.0% |
| ATCAAATTACCGCACGTGGC+AGG | - | chr1_2:56362196-56362215 | Msa0078700:intron | 50.0% | |
| ! | GCAGGAGGTCAAAAGTGCAT+AGG | - | chr1_2:56362214-56362233 | Msa0078700:intron | 50.0% |
| ! | CTTTTCGTTGTGCTCACAGG+AGG | - | chr1_2:56362320-56362339 | Msa0078700:intron | 50.0% |
| CGCAGCTCTTGAGAAAACAG+GGG | + | chr1_2:56362516-56362535 | None:intergenic | 50.0% | |
| CACGCAGCTCTTGAGAAAAC+AGG | + | chr1_2:56362518-56362537 | None:intergenic | 50.0% | |
| ! | CTGTTTTCTCAAGAGCTGCG+TGG | - | chr1_2:56362516-56362535 | Msa0078700:intron | 50.0% |
| AGAACGACTTGATCCATGCG+TGG | - | chr1_2:56362647-56362666 | Msa0078700:intron | 50.0% | |
| GAACGACTTGATCCATGCGT+GGG | - | chr1_2:56362648-56362667 | Msa0078700:intron | 50.0% | |
| AACGACTTGATCCATGCGTG+GGG | - | chr1_2:56362649-56362668 | Msa0078700:intron | 50.0% | |
| TGGGGACTAGATATGCAGCT+TGG | - | chr1_2:56362667-56362686 | Msa0078700:intron | 50.0% | |
| CACTACAATCGTCCCACACT+TGG | - | chr1_2:56363009-56363028 | Msa0078700:intron | 50.0% | |
| TACAATCGTCCCACACTTGG+AGG | - | chr1_2:56363012-56363031 | Msa0078700:intron | 50.0% | |
| GTTATCTGTGCCTCCAAGTG+TGG | + | chr1_2:56363025-56363044 | None:intergenic | 50.0% | |
| CTAAGCACAAGCCACCCAAA+AGG | + | chr1_2:56363375-56363394 | None:intergenic | 50.0% | |
| !! | CTTTTGGGTGGCTTGTGCTT+AGG | - | chr1_2:56363373-56363392 | Msa0078700:intron | 50.0% |
| ! | CACCAAACTCTAGAAGGTGC+AGG | + | chr1_2:56363425-56363444 | None:intergenic | 50.0% |
| !! | GAGAGTCTCAAAGGGCATCA+TGG | - | chr1_2:56363926-56363945 | Msa0078700:intron | 50.0% |
| GGAGCGGGAAGCGAAAATCA+CGG | + | chr1_2:56360215-56360234 | None:intergenic | 55.0% | |
| TAGAAGCAGTGCAGGCCTAG+TGG | - | chr1_2:56361034-56361053 | Msa0078700:intron | 55.0% | |
| GTAATCCTCCGGTTCCCAAG+AGG | - | chr1_2:56361281-56361300 | Msa0078700:CDS | 55.0% | |
| CTCCTAGGTCCTCATCCCAA+AGG | + | chr1_2:56361950-56361969 | None:intergenic | 55.0% | |
| AAATTACCGCACGTGGCAGG+AGG | - | chr1_2:56362199-56362218 | Msa0078700:intron | 55.0% | |
| ! | TTTTGACCTCCTGCCACGTG+CGG | + | chr1_2:56362208-56362227 | None:intergenic | 55.0% |
| GCATATCTAGTCCCCACGCA+TGG | + | chr1_2:56362663-56362682 | None:intergenic | 55.0% | |
| GCAGCTTGGCTACTGTTCTC+AGG | - | chr1_2:56362681-56362700 | Msa0078700:intron | 55.0% | |
| !! | TTTTGGAGGGGGTGCAGGTA+AGG | - | chr1_2:56363678-56363697 | Msa0078700:intron | 55.0% |
| ACGTTGGGTCAAGGCGGTTA+AGG | - | chr1_2:56363736-56363755 | Msa0078700:intron | 55.0% | |
| TTGGGTCAAGGCGGTTAAGG+AGG | - | chr1_2:56363739-56363758 | Msa0078700:intron | 55.0% | |
| TCAGTCCTCTTGGGAACCGG+AGG | + | chr1_2:56361289-56361308 | None:intergenic | 60.0% | |
| AGCACAGCTCCTCCTTGCAC+CGG | - | chr1_2:56362385-56362404 | Msa0078700:CDS | 60.0% | |
| GCACAGCTCCTCCTTGCACC+GGG | - | chr1_2:56362386-56362405 | Msa0078700:CDS | 65.0% | |
| GAGCTGCGTGGCGTTGTGTC+TGG | - | chr1_2:56362528-56362547 | Msa0078700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 56360185 | 56364146 | 56360185 | ID=Msa0078700;Name=Msa0078700 |
| chr1_2 | mRNA | 56360185 | 56364146 | 56360185 | ID=Msa0078700-mRNA-1;Parent=Msa0078700;Name=Msa0078700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=153|0.93|0.93|1|0.86|0.75|16|322|388 |
| chr1_2 | exon | 56360185 | 56360221 | 56360185 | ID=Msa0078700-mRNA-1:exon:17651;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56360256 | 56360636 | 56360256 | ID=Msa0078700-mRNA-1:exon:17650;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56361127 | 56361165 | 56361127 | ID=Msa0078700-mRNA-1:exon:17649;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56361278 | 56361370 | 56361278 | ID=Msa0078700-mRNA-1:exon:17648;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56361629 | 56361682 | 56361629 | ID=Msa0078700-mRNA-1:exon:17647;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56361769 | 56361835 | 56361769 | ID=Msa0078700-mRNA-1:exon:17646;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56361924 | 56361992 | 56361924 | ID=Msa0078700-mRNA-1:exon:17645;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56362096 | 56362212 | 56362096 | ID=Msa0078700-mRNA-1:exon:17644;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56362340 | 56362441 | 56362340 | ID=Msa0078700-mRNA-1:exon:17643;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56362545 | 56362663 | 56362545 | ID=Msa0078700-mRNA-1:exon:17642;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56362754 | 56362837 | 56362754 | ID=Msa0078700-mRNA-1:exon:17641;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56363178 | 56363294 | 56363178 | ID=Msa0078700-mRNA-1:exon:17640;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56363392 | 56363451 | 56363392 | ID=Msa0078700-mRNA-1:exon:17639;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56363546 | 56363665 | 56363546 | ID=Msa0078700-mRNA-1:exon:17638;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56363842 | 56363916 | 56363842 | ID=Msa0078700-mRNA-1:exon:17637;Parent=Msa0078700-mRNA-1 |
| chr1_2 | exon | 56364039 | 56364146 | 56364039 | ID=Msa0078700-mRNA-1:exon:17636;Parent=Msa0078700-mRNA-1 |
| chr1_2 | five_prime_UTR | 56364039 | 56364146 | 56364039 | ID=Msa0078700-mRNA-1:five_prime_utr;Parent=Msa0078700-mRNA-1 |
| chr1_2 | five_prime_UTR | 56363872 | 56363916 | 56363872 | ID=Msa0078700-mRNA-1:five_prime_utr;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56363842 | 56363871 | 56363842 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56363546 | 56363665 | 56363546 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56363392 | 56363451 | 56363392 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56363178 | 56363294 | 56363178 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56362754 | 56362837 | 56362754 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56362545 | 56362663 | 56362545 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56362340 | 56362441 | 56362340 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56362096 | 56362212 | 56362096 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56361924 | 56361992 | 56361924 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56361769 | 56361835 | 56361769 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56361629 | 56361682 | 56361629 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56361278 | 56361370 | 56361278 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56361127 | 56361165 | 56361127 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | CDS | 56360541 | 56360636 | 56360541 | ID=Msa0078700-mRNA-1:cds;Parent=Msa0078700-mRNA-1 |
| chr1_2 | three_prime_UTR | 56360256 | 56360540 | 56360256 | ID=Msa0078700-mRNA-1:three_prime_utr;Parent=Msa0078700-mRNA-1 |
| chr1_2 | three_prime_UTR | 56360185 | 56360221 | 56360185 | ID=Msa0078700-mRNA-1:three_prime_utr;Parent=Msa0078700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
