AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1192590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192590 MtrunA17_Chr4g0069121 96.864 287 8 1 1 287 1 286 0.0 573
Msa1192590 MtrunA17_Chr4g0058901 35.374 294 162 10 2 280 10 290 7.11e-51 171
Msa1192590 MtrunA17_Chr4g0075211 32.443 262 149 13 34 277 38 289 9.06e-28 110
Msa1192590 MtrunA17_Chr2g0288891 33.203 256 135 13 32 265 22 263 2.17e-27 109
Msa1192590 MtrunA17_Chr8g0381971 30.712 267 156 11 15 265 10 263 3.18e-27 108
Msa1192590 MtrunA17_Chr5g0415341 31.439 264 164 9 13 264 8 266 4.08e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192590 AT3G17350.1 63.525 244 80 3 32 267 29 271 9.66e-112 327
Msa1192590 AT3G17350.2 64.167 240 77 3 34 265 31 269 1.54e-110 323
Msa1192590 AT5G50290.1 33.582 268 160 7 13 264 1 266 1.35e-46 160
Msa1192590 AT1G10380.1 34.800 250 136 9 34 264 29 270 7.15e-32 121
Msa1192590 AT1G10380.2 34.800 250 136 9 34 264 29 270 8.18e-32 121
Msa1192590 AT1G11915.1 31.646 237 143 7 34 255 31 263 5.00e-29 114

Find 68 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCCTTTGGATTGGGTTTA+TGG 0.099494 8_1:-38453303 Msa1192590:CDS
GTTTATGAGTATGAATATTT+TGG 0.176981 8_1:-38453376 Msa1192590:CDS
GTCCTTTGGATTGGGTTTAT+GGG 0.234143 8_1:-38453302 Msa1192590:CDS
TTATTCTTTCAAACTCCTTC+TGG 0.239774 8_1:-38453732 Msa1192590:CDS
AAACCGAATGGGTAGTTTAT+AGG 0.261528 8_1:+38453813 None:intergenic
CACACTTGTGATGAGCTTTA+TGG 0.305918 8_1:-38453483 Msa1192590:CDS
ATTGAGAGGTGTTGGTCCTT+TGG 0.340253 8_1:-38453316 Msa1192590:CDS
TCCTTCTGATATCATGCTTC+CGG 0.381010 8_1:+38452665 None:intergenic
CAACTTTCACATCCAGTATC+AGG 0.395675 8_1:+38453258 None:intergenic
CAAAGAAACAAAGTATGGTT+TGG 0.407286 8_1:+38453991 None:intergenic
AAGGAGTGTACAATGCTCTT+TGG 0.408970 8_1:-38452647 Msa1192590:CDS
GAAAGCAAAGAAACAAAGTA+TGG 0.410793 8_1:+38453986 None:intergenic
CACAATCTGGTGGGATTTGT+GGG 0.413624 8_1:-38453233 Msa1192590:CDS
TGGCTTGTAGTAGTTGTAGA+TGG 0.416349 8_1:+38453883 None:intergenic
TAAAACAAAGATATTTGTAA+TGG 0.422370 8_1:+38453517 None:intergenic
AGGTGTTGGTCCTTTGGATT+GGG 0.424565 8_1:-38453310 Msa1192590:CDS
GAGGTGTTGGTCCTTTGGAT+TGG 0.424668 8_1:-38453311 Msa1192590:CDS
TGTATCTCAGCTGCTGGAAC+CGG 0.428657 8_1:-38452684 Msa1192590:intron
ATGGAGCAAGTTGACATTGA+TGG 0.431134 8_1:+38453654 None:intergenic
TATAAACTACCCATTCGGTT+TGG 0.432975 8_1:-38453811 Msa1192590:CDS
TACCCATTCGGTTTGGAAGA+TGG 0.440399 8_1:-38453804 Msa1192590:CDS
TATTTGTAATGGTTAAGAAC+AGG 0.444608 8_1:+38453528 None:intergenic
ACACAATCTGGTGGGATTTG+TGG 0.447706 8_1:-38453234 Msa1192590:CDS
TTCGGTTTGGAAGATGGTTG+TGG 0.449681 8_1:-38453798 Msa1192590:CDS
GTGAAAAGAGGAGTAACTTT+GGG 0.460164 8_1:+38454020 None:intergenic
GCAGGGTGAGAGTGTGTGAA+TGG 0.463159 8_1:+38453857 None:intergenic
GGTGAAAAGAGGAGTAACTT+TGG 0.468386 8_1:+38454019 None:intergenic
ACAATGAGCATGATGACAAA+TGG 0.470635 8_1:-38452431 Msa1192590:CDS
ATTCCTATAAACTACCCATT+CGG 0.492935 8_1:-38453816 Msa1192590:CDS
ATCATGATGAGGTTGAAGAA+TGG 0.498307 8_1:+38453635 None:intergenic
TGCTATTATTCCTCCATCAC+AGG 0.508874 8_1:-38453589 Msa1192590:CDS
AACCATCTTCCAAACCGAAT+GGG 0.514516 8_1:+38453802 None:intergenic
ACAAAGTATGGTTTGGAGGG+TGG 0.526138 8_1:+38453998 None:intergenic
TGGAGCAAGTTGACATTGAT+GGG 0.527863 8_1:+38453655 None:intergenic
GTTTGGAGGGTGGTGAAAAG+AGG 0.532768 8_1:+38454008 None:intergenic
TGTGAAAGTTGTACACAATC+TGG 0.535884 8_1:-38453246 Msa1192590:CDS
AGTGATAAATTGAGAGGTGT+TGG 0.537265 8_1:-38453324 Msa1192590:CDS
AGAAACAAAGTATGGTTTGG+AGG 0.556191 8_1:+38453994 None:intergenic
ATGAGTTTGAAGATTGTGAA+TGG 0.557897 8_1:+38453918 None:intergenic
CAGGGTGAGAGTGTGTGAAT+GGG 0.561055 8_1:+38453858 None:intergenic
CAAGTTTCACTAATTCAACA+AGG 0.561620 8_1:-38453173 Msa1192590:CDS
TGAGAGTGTGTGAATGGGAA+TGG 0.572032 8_1:+38453863 None:intergenic
ACTAATTCAACAAGGGAATG+TGG 0.573682 8_1:-38453165 Msa1192590:intron
TATAGGAATGGTACCACATG+AGG 0.575471 8_1:+38453830 None:intergenic
CAACCATCTTCCAAACCGAA+TGG 0.581667 8_1:+38453801 None:intergenic
GAAACAAAGTATGGTTTGGA+GGG 0.602443 8_1:+38453995 None:intergenic
ATCCCATAAACCCAATCCAA+AGG 0.604071 8_1:+38453300 None:intergenic
ACCGGAAGCATGATATCAGA+AGG 0.604148 8_1:-38452666 Msa1192590:CDS
AAAACAGTGTCCTGTGATGG+AGG 0.608306 8_1:+38453579 None:intergenic
TGTACAATGCTCTTTGGACA+CGG 0.610218 8_1:-38452641 Msa1192590:CDS
CTCGTGAAACAACAAGGTGG+TGG 0.615967 8_1:+38453414 None:intergenic
GAATGGGTAGTTTATAGGAA+TGG 0.619390 8_1:+38453818 None:intergenic
TGAACTTTGTAAGAACCAGA+AGG 0.628532 8_1:+38453717 None:intergenic
TCACCCTGCAAAACCTCATG+TGG 0.633355 8_1:-38453843 Msa1192590:CDS
TTTAATAGTGATAAATTGAG+AGG 0.647028 8_1:-38453330 Msa1192590:CDS
TTGAACATGTTTCTGAACTG+TGG 0.654643 8_1:+38453771 None:intergenic
GCAACTTTATATCACTAGAG+AGG 0.657518 8_1:+38452495 None:intergenic
TTATAGCTCGTGAAACAACA+AGG 0.671730 8_1:+38453408 None:intergenic
TCTTTGGACACGGCACCAAG+TGG 0.673512 8_1:-38452631 Msa1192590:intron
TGATGGGTCGTAGAGTACCA+TGG 0.674328 8_1:+38453671 None:intergenic
ACTTGTGATGAGCTTTATGG+TGG 0.679797 8_1:-38453480 Msa1192590:CDS
GGGTTTGATACTGAAACTGA+AGG 0.680082 8_1:-38453213 Msa1192590:CDS
AAGTTTCACTAATTCAACAA+GGG 0.686221 8_1:-38453172 Msa1192590:CDS
GAAAGTTGTACACAATCTGG+TGG 0.691833 8_1:-38453243 Msa1192590:CDS
GTCATGAGAAAATCATGATG+AGG 0.693658 8_1:+38453624 None:intergenic
AAAGTTGTACACAATCTGGT+GGG 0.724462 8_1:-38453242 Msa1192590:CDS
AGTTTGAAAGAATAACTCAG+TGG 0.732725 8_1:+38453740 None:intergenic
TAGCTCGTGAAACAACAAGG+TGG 0.804087 8_1:+38453411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTTAGAAATTAAAA+AGG - chr8_1:38453434-38453453 Msa1192590:CDS 10.0%
!!! TTCTTTTTTAGAAATTAAAA+AGG - chr8_1:38453434-38453453 Msa1192590:CDS 10.0%
!! TAAAACAAAGATATTTGTAA+TGG + chr8_1:38452927-38452946 None:intergenic 15.0%
!! TAAAACAAAGATATTTGTAA+TGG + chr8_1:38452927-38452946 None:intergenic 15.0%
!!! TATCTTTGTTTTAACTTTGA+AGG - chr8_1:38452934-38452953 Msa1192590:intron 20.0%
!!! GTTTATGAGTATGAATATTT+TGG - chr8_1:38453065-38453084 Msa1192590:intron 20.0%
!! TTTAATAGTGATAAATTGAG+AGG - chr8_1:38453111-38453130 Msa1192590:intron 20.0%
!!! TATTTGGATTTTGAATCATT+TGG - chr8_1:38453319-38453338 Msa1192590:CDS 20.0%
!!! TATCTTTGTTTTAACTTTGA+AGG - chr8_1:38452934-38452953 Msa1192590:intron 20.0%
!!! GTTTATGAGTATGAATATTT+TGG - chr8_1:38453065-38453084 Msa1192590:intron 20.0%
!! TTTAATAGTGATAAATTGAG+AGG - chr8_1:38453111-38453130 Msa1192590:intron 20.0%
!!! TATTTGGATTTTGAATCATT+TGG - chr8_1:38453319-38453338 Msa1192590:CDS 20.0%
! TATTTGTAATGGTTAAGAAC+AGG + chr8_1:38452916-38452935 None:intergenic 25.0%
! AAGTTTCACTAATTCAACAA+GGG - chr8_1:38453269-38453288 Msa1192590:CDS 25.0%
!!! CTTTTTTAGTTGATAACAGT+AGG - chr8_1:38453601-38453620 Msa1192590:CDS 25.0%
!!! TAAGTTTTATCTGAGTTGTT+AGG - chr8_1:38453629-38453648 Msa1192590:CDS 25.0%
! AAATAGAATACGGAAACTTA+CGG + chr8_1:38453737-38453756 None:intergenic 25.0%
! CTGAGATACAAAATAGAATA+CGG + chr8_1:38453747-38453766 None:intergenic 25.0%
! TATTTGTAATGGTTAAGAAC+AGG + chr8_1:38452916-38452935 None:intergenic 25.0%
! AAGTTTCACTAATTCAACAA+GGG - chr8_1:38453269-38453288 Msa1192590:CDS 25.0%
!!! CTTTTTTAGTTGATAACAGT+AGG - chr8_1:38453601-38453620 Msa1192590:CDS 25.0%
!!! TAAGTTTTATCTGAGTTGTT+AGG - chr8_1:38453629-38453648 Msa1192590:CDS 25.0%
! AAATAGAATACGGAAACTTA+CGG + chr8_1:38453737-38453756 None:intergenic 25.0%
! CTGAGATACAAAATAGAATA+CGG + chr8_1:38453747-38453766 None:intergenic 25.0%
CAAAGAAACAAAGTATGGTT+TGG + chr8_1:38452453-38452472 None:intergenic 30.0%
GAAAGCAAAGAAACAAAGTA+TGG + chr8_1:38452458-38452477 None:intergenic 30.0%
ATGAGTTTGAAGATTGTGAA+TGG + chr8_1:38452526-38452545 None:intergenic 30.0%
ATTCCTATAAACTACCCATT+CGG - chr8_1:38452625-38452644 Msa1192590:intron 30.0%
AGTTTGAAAGAATAACTCAG+TGG + chr8_1:38452704-38452723 None:intergenic 30.0%
TTATTCTTTCAAACTCCTTC+TGG - chr8_1:38452709-38452728 Msa1192590:intron 30.0%
!!! GGTTTTTTTGTTGTAGTCAA+TGG + chr8_1:38452752-38452771 None:intergenic 30.0%
TGACTACAACAAAAAAACCA+TGG - chr8_1:38452753-38452772 Msa1192590:intron 30.0%
CAAGTTTCACTAATTCAACA+AGG - chr8_1:38453268-38453287 Msa1192590:CDS 30.0%
CTACTACTTGGTTTCTTATT+TGG - chr8_1:38453303-38453322 Msa1192590:CDS 30.0%
! TGGTGCTAGTTAATATGAAT+AGG - chr8_1:38453339-38453358 Msa1192590:CDS 30.0%
GGTGCTAGTTAATATGAATA+GGG - chr8_1:38453340-38453359 Msa1192590:CDS 30.0%
! TAGTTTTTCTTCACAAGATG+AGG - chr8_1:38453845-38453864 Msa1192590:CDS 30.0%
! AGTTTTTCTTCACAAGATGA+GGG - chr8_1:38453846-38453865 Msa1192590:CDS 30.0%
! AACAGAAAGATGTCTCTTTT+TGG + chr8_1:38453979-38453998 None:intergenic 30.0%
CAAAGAAACAAAGTATGGTT+TGG + chr8_1:38452453-38452472 None:intergenic 30.0%
GAAAGCAAAGAAACAAAGTA+TGG + chr8_1:38452458-38452477 None:intergenic 30.0%
ATGAGTTTGAAGATTGTGAA+TGG + chr8_1:38452526-38452545 None:intergenic 30.0%
ATTCCTATAAACTACCCATT+CGG - chr8_1:38452625-38452644 Msa1192590:intron 30.0%
AGTTTGAAAGAATAACTCAG+TGG + chr8_1:38452704-38452723 None:intergenic 30.0%
TTATTCTTTCAAACTCCTTC+TGG - chr8_1:38452709-38452728 Msa1192590:intron 30.0%
!!! GGTTTTTTTGTTGTAGTCAA+TGG + chr8_1:38452752-38452771 None:intergenic 30.0%
TGACTACAACAAAAAAACCA+TGG - chr8_1:38452753-38452772 Msa1192590:intron 30.0%
CAAGTTTCACTAATTCAACA+AGG - chr8_1:38453268-38453287 Msa1192590:CDS 30.0%
CTACTACTTGGTTTCTTATT+TGG - chr8_1:38453303-38453322 Msa1192590:CDS 30.0%
! TGGTGCTAGTTAATATGAAT+AGG - chr8_1:38453339-38453358 Msa1192590:CDS 30.0%
GGTGCTAGTTAATATGAATA+GGG - chr8_1:38453340-38453359 Msa1192590:CDS 30.0%
! TAGTTTTTCTTCACAAGATG+AGG - chr8_1:38453845-38453864 Msa1192590:CDS 30.0%
! AGTTTTTCTTCACAAGATGA+GGG - chr8_1:38453846-38453865 Msa1192590:CDS 30.0%
! AACAGAAAGATGTCTCTTTT+TGG + chr8_1:38453979-38453998 None:intergenic 30.0%
GTGAAAAGAGGAGTAACTTT+GGG + chr8_1:38452424-38452443 None:intergenic 35.0%
! GAAACAAAGTATGGTTTGGA+GGG + chr8_1:38452449-38452468 None:intergenic 35.0%
! AGAAACAAAGTATGGTTTGG+AGG + chr8_1:38452450-38452469 None:intergenic 35.0%
GAATGGGTAGTTTATAGGAA+TGG + chr8_1:38452626-38452645 None:intergenic 35.0%
AAACCGAATGGGTAGTTTAT+AGG + chr8_1:38452631-38452650 None:intergenic 35.0%
TATAAACTACCCATTCGGTT+TGG - chr8_1:38452630-38452649 Msa1192590:intron 35.0%
! TTGAACATGTTTCTGAACTG+TGG + chr8_1:38452673-38452692 None:intergenic 35.0%
TGAACTTTGTAAGAACCAGA+AGG + chr8_1:38452727-38452746 None:intergenic 35.0%
ATCATGATGAGGTTGAAGAA+TGG + chr8_1:38452809-38452828 None:intergenic 35.0%
GTCATGAGAAAATCATGATG+AGG + chr8_1:38452820-38452839 None:intergenic 35.0%
TTATAGCTCGTGAAACAACA+AGG + chr8_1:38453036-38453055 None:intergenic 35.0%
! AGTGATAAATTGAGAGGTGT+TGG - chr8_1:38453117-38453136 Msa1192590:intron 35.0%
TGTGAAAGTTGTACACAATC+TGG - chr8_1:38453195-38453214 Msa1192590:CDS 35.0%
AAAGTTGTACACAATCTGGT+GGG - chr8_1:38453199-38453218 Msa1192590:CDS 35.0%
ACTAATTCAACAAGGGAATG+TGG - chr8_1:38453276-38453295 Msa1192590:CDS 35.0%
GAAAATCATACAGCACTAAC+TGG - chr8_1:38453456-38453475 Msa1192590:CDS 35.0%
! CACCAACAACAACTTTGAAA+GGG + chr8_1:38453568-38453587 None:intergenic 35.0%
TCACCAACAACAACTTTGAA+AGG + chr8_1:38453569-38453588 None:intergenic 35.0%
CTACAATAAGCAAAACCACT+TGG + chr8_1:38453828-38453847 None:intergenic 35.0%
! GTTTTTCTTCACAAGATGAG+GGG - chr8_1:38453847-38453866 Msa1192590:CDS 35.0%
! TTTTTCTTCACAAGATGAGG+GGG - chr8_1:38453848-38453867 Msa1192590:CDS 35.0%
GCAACTTTATATCACTAGAG+AGG + chr8_1:38453949-38453968 None:intergenic 35.0%
ACAATGAGCATGATGACAAA+TGG - chr8_1:38454010-38454029 Msa1192590:five_prime_UTR 35.0%
GTGAAAAGAGGAGTAACTTT+GGG + chr8_1:38452424-38452443 None:intergenic 35.0%
! GAAACAAAGTATGGTTTGGA+GGG + chr8_1:38452449-38452468 None:intergenic 35.0%
! AGAAACAAAGTATGGTTTGG+AGG + chr8_1:38452450-38452469 None:intergenic 35.0%
GAATGGGTAGTTTATAGGAA+TGG + chr8_1:38452626-38452645 None:intergenic 35.0%
AAACCGAATGGGTAGTTTAT+AGG + chr8_1:38452631-38452650 None:intergenic 35.0%
TATAAACTACCCATTCGGTT+TGG - chr8_1:38452630-38452649 Msa1192590:intron 35.0%
! TTGAACATGTTTCTGAACTG+TGG + chr8_1:38452673-38452692 None:intergenic 35.0%
TGAACTTTGTAAGAACCAGA+AGG + chr8_1:38452727-38452746 None:intergenic 35.0%
ATCATGATGAGGTTGAAGAA+TGG + chr8_1:38452809-38452828 None:intergenic 35.0%
GTCATGAGAAAATCATGATG+AGG + chr8_1:38452820-38452839 None:intergenic 35.0%
TTATAGCTCGTGAAACAACA+AGG + chr8_1:38453036-38453055 None:intergenic 35.0%
! AGTGATAAATTGAGAGGTGT+TGG - chr8_1:38453117-38453136 Msa1192590:intron 35.0%
TGTGAAAGTTGTACACAATC+TGG - chr8_1:38453195-38453214 Msa1192590:CDS 35.0%
AAAGTTGTACACAATCTGGT+GGG - chr8_1:38453199-38453218 Msa1192590:CDS 35.0%
ACTAATTCAACAAGGGAATG+TGG - chr8_1:38453276-38453295 Msa1192590:CDS 35.0%
GAAAATCATACAGCACTAAC+TGG - chr8_1:38453456-38453475 Msa1192590:CDS 35.0%
! CACCAACAACAACTTTGAAA+GGG + chr8_1:38453568-38453587 None:intergenic 35.0%
TCACCAACAACAACTTTGAA+AGG + chr8_1:38453569-38453588 None:intergenic 35.0%
CTACAATAAGCAAAACCACT+TGG + chr8_1:38453828-38453847 None:intergenic 35.0%
! GTTTTTCTTCACAAGATGAG+GGG - chr8_1:38453847-38453866 Msa1192590:CDS 35.0%
! TTTTTCTTCACAAGATGAGG+GGG - chr8_1:38453848-38453867 Msa1192590:CDS 35.0%
GCAACTTTATATCACTAGAG+AGG + chr8_1:38453949-38453968 None:intergenic 35.0%
ACAATGAGCATGATGACAAA+TGG - chr8_1:38454010-38454029 Msa1192590:five_prime_UTR 35.0%
GGTGAAAAGAGGAGTAACTT+TGG + chr8_1:38452425-38452444 None:intergenic 40.0%
! TGGCTTGTAGTAGTTGTAGA+TGG + chr8_1:38452561-38452580 None:intergenic 40.0%
TATAGGAATGGTACCACATG+AGG + chr8_1:38452614-38452633 None:intergenic 40.0%
AACCATCTTCCAAACCGAAT+GGG + chr8_1:38452642-38452661 None:intergenic 40.0%
! TGGAGCAAGTTGACATTGAT+GGG + chr8_1:38452789-38452808 None:intergenic 40.0%
! ATGGAGCAAGTTGACATTGA+TGG + chr8_1:38452790-38452809 None:intergenic 40.0%
TGCTATTATTCCTCCATCAC+AGG - chr8_1:38452852-38452871 Msa1192590:intron 40.0%
ACAAAAACAGTGTCCTGTGA+TGG + chr8_1:38452868-38452887 None:intergenic 40.0%
CACACTTGTGATGAGCTTTA+TGG - chr8_1:38452958-38452977 Msa1192590:intron 40.0%
! ACTTGTGATGAGCTTTATGG+TGG - chr8_1:38452961-38452980 Msa1192590:intron 40.0%
! ATGGTGGTTGCAATGCTTTT+AGG - chr8_1:38452977-38452996 Msa1192590:intron 40.0%
! TGGTGGTTGCAATGCTTTTA+GGG - chr8_1:38452978-38452997 Msa1192590:intron 40.0%
! GTCCTTTGGATTGGGTTTAT+GGG - chr8_1:38453139-38453158 Msa1192590:intron 40.0%
ATCCCATAAACCCAATCCAA+AGG + chr8_1:38453144-38453163 None:intergenic 40.0%
! TCTTTTAGTGTGCCTGATAC+TGG - chr8_1:38453171-38453190 Msa1192590:CDS 40.0%
CAACTTTCACATCCAGTATC+AGG + chr8_1:38453186-38453205 None:intergenic 40.0%
GAAAGTTGTACACAATCTGG+TGG - chr8_1:38453198-38453217 Msa1192590:CDS 40.0%
GGGTTTGATACTGAAACTGA+AGG - chr8_1:38453228-38453247 Msa1192590:CDS 40.0%
GAATGTGGTAAGCTACTACT+TGG - chr8_1:38453291-38453310 Msa1192590:CDS 40.0%
CACCCTTTCAAAGTTGTTGT+TGG - chr8_1:38453563-38453582 Msa1192590:CDS 40.0%
TTGCTTCGAGCTTAGAGTTA+AGG + chr8_1:38453689-38453708 None:intergenic 40.0%
GAATACGGAAACTTACGGTT+AGG + chr8_1:38453732-38453751 None:intergenic 40.0%
! CTATTTTGTATCTCAGCTGC+TGG - chr8_1:38453751-38453770 Msa1192590:CDS 40.0%
TCCTTCTGATATCATGCTTC+CGG + chr8_1:38453779-38453798 None:intergenic 40.0%
! AAGGAGTGTACAATGCTCTT+TGG - chr8_1:38453794-38453813 Msa1192590:CDS 40.0%
TGTACAATGCTCTTTGGACA+CGG - chr8_1:38453800-38453819 Msa1192590:CDS 40.0%
! TTGTGTTCCACTCCTTTTGT+AGG - chr8_1:38453898-38453917 Msa1192590:CDS 40.0%
GGTGAAAAGAGGAGTAACTT+TGG + chr8_1:38452425-38452444 None:intergenic 40.0%
! TGGCTTGTAGTAGTTGTAGA+TGG + chr8_1:38452561-38452580 None:intergenic 40.0%
TATAGGAATGGTACCACATG+AGG + chr8_1:38452614-38452633 None:intergenic 40.0%
AACCATCTTCCAAACCGAAT+GGG + chr8_1:38452642-38452661 None:intergenic 40.0%
! TGGAGCAAGTTGACATTGAT+GGG + chr8_1:38452789-38452808 None:intergenic 40.0%
! ATGGAGCAAGTTGACATTGA+TGG + chr8_1:38452790-38452809 None:intergenic 40.0%
TGCTATTATTCCTCCATCAC+AGG - chr8_1:38452852-38452871 Msa1192590:intron 40.0%
ACAAAAACAGTGTCCTGTGA+TGG + chr8_1:38452868-38452887 None:intergenic 40.0%
CACACTTGTGATGAGCTTTA+TGG - chr8_1:38452958-38452977 Msa1192590:intron 40.0%
! ACTTGTGATGAGCTTTATGG+TGG - chr8_1:38452961-38452980 Msa1192590:intron 40.0%
! ATGGTGGTTGCAATGCTTTT+AGG - chr8_1:38452977-38452996 Msa1192590:intron 40.0%
! TGGTGGTTGCAATGCTTTTA+GGG - chr8_1:38452978-38452997 Msa1192590:intron 40.0%
! GTCCTTTGGATTGGGTTTAT+GGG - chr8_1:38453139-38453158 Msa1192590:intron 40.0%
ATCCCATAAACCCAATCCAA+AGG + chr8_1:38453144-38453163 None:intergenic 40.0%
! TCTTTTAGTGTGCCTGATAC+TGG - chr8_1:38453171-38453190 Msa1192590:CDS 40.0%
CAACTTTCACATCCAGTATC+AGG + chr8_1:38453186-38453205 None:intergenic 40.0%
GAAAGTTGTACACAATCTGG+TGG - chr8_1:38453198-38453217 Msa1192590:CDS 40.0%
GGGTTTGATACTGAAACTGA+AGG - chr8_1:38453228-38453247 Msa1192590:CDS 40.0%
GAATGTGGTAAGCTACTACT+TGG - chr8_1:38453291-38453310 Msa1192590:CDS 40.0%
CACCCTTTCAAAGTTGTTGT+TGG - chr8_1:38453563-38453582 Msa1192590:CDS 40.0%
TTGCTTCGAGCTTAGAGTTA+AGG + chr8_1:38453689-38453708 None:intergenic 40.0%
GAATACGGAAACTTACGGTT+AGG + chr8_1:38453732-38453751 None:intergenic 40.0%
! CTATTTTGTATCTCAGCTGC+TGG - chr8_1:38453751-38453770 Msa1192590:CDS 40.0%
TCCTTCTGATATCATGCTTC+CGG + chr8_1:38453779-38453798 None:intergenic 40.0%
! AAGGAGTGTACAATGCTCTT+TGG - chr8_1:38453794-38453813 Msa1192590:CDS 40.0%
TGTACAATGCTCTTTGGACA+CGG - chr8_1:38453800-38453819 Msa1192590:CDS 40.0%
! TTGTGTTCCACTCCTTTTGT+AGG - chr8_1:38453898-38453917 Msa1192590:CDS 40.0%
! ACAAAGTATGGTTTGGAGGG+TGG + chr8_1:38452446-38452465 None:intergenic 45.0%
! TGAGAGTGTGTGAATGGGAA+TGG + chr8_1:38452581-38452600 None:intergenic 45.0%
! GTACCACATGAGGTTTTGCA+GGG + chr8_1:38452604-38452623 None:intergenic 45.0%
!! TACCCATTCGGTTTGGAAGA+TGG - chr8_1:38452637-38452656 Msa1192590:CDS 45.0%
CAACCATCTTCCAAACCGAA+TGG + chr8_1:38452643-38452662 None:intergenic 45.0%
!! TTCGGTTTGGAAGATGGTTG+TGG - chr8_1:38452643-38452662 Msa1192590:CDS 45.0%
AAAACAGTGTCCTGTGATGG+AGG + chr8_1:38452865-38452884 None:intergenic 45.0%
TAGCTCGTGAAACAACAAGG+TGG + chr8_1:38453033-38453052 None:intergenic 45.0%
!! ATTGAGAGGTGTTGGTCCTT+TGG - chr8_1:38453125-38453144 Msa1192590:intron 45.0%
!! AGGTGTTGGTCCTTTGGATT+GGG - chr8_1:38453131-38453150 Msa1192590:intron 45.0%
! GGTCCTTTGGATTGGGTTTA+TGG - chr8_1:38453138-38453157 Msa1192590:intron 45.0%
ACACAATCTGGTGGGATTTG+TGG - chr8_1:38453207-38453226 Msa1192590:CDS 45.0%
CACAATCTGGTGGGATTTGT+GGG - chr8_1:38453208-38453227 Msa1192590:CDS 45.0%
GCAATTGAGCTACCAAAACC+TGG - chr8_1:38453705-38453724 Msa1192590:CDS 45.0%
! TTACGGTTAGGACCAGGTTT+TGG + chr8_1:38453720-38453739 None:intergenic 45.0%
! ACCGGAAGCATGATATCAGA+AGG - chr8_1:38453775-38453794 Msa1192590:CDS 45.0%
! TGTTCCACTCCTTTTGTAGG+TGG - chr8_1:38453901-38453920 Msa1192590:CDS 45.0%
! GTTCCACTCCTTTTGTAGGT+GGG - chr8_1:38453902-38453921 Msa1192590:CDS 45.0%
CTTCATTGCCCACCTACAAA+AGG + chr8_1:38453913-38453932 None:intergenic 45.0%
! ACAAAGTATGGTTTGGAGGG+TGG + chr8_1:38452446-38452465 None:intergenic 45.0%
! TGAGAGTGTGTGAATGGGAA+TGG + chr8_1:38452581-38452600 None:intergenic 45.0%
! GTACCACATGAGGTTTTGCA+GGG + chr8_1:38452604-38452623 None:intergenic 45.0%
!! TACCCATTCGGTTTGGAAGA+TGG - chr8_1:38452637-38452656 Msa1192590:CDS 45.0%
CAACCATCTTCCAAACCGAA+TGG + chr8_1:38452643-38452662 None:intergenic 45.0%
!! TTCGGTTTGGAAGATGGTTG+TGG - chr8_1:38452643-38452662 Msa1192590:CDS 45.0%
AAAACAGTGTCCTGTGATGG+AGG + chr8_1:38452865-38452884 None:intergenic 45.0%
TAGCTCGTGAAACAACAAGG+TGG + chr8_1:38453033-38453052 None:intergenic 45.0%
!! ATTGAGAGGTGTTGGTCCTT+TGG - chr8_1:38453125-38453144 Msa1192590:intron 45.0%
!! AGGTGTTGGTCCTTTGGATT+GGG - chr8_1:38453131-38453150 Msa1192590:intron 45.0%
! GGTCCTTTGGATTGGGTTTA+TGG - chr8_1:38453138-38453157 Msa1192590:intron 45.0%
ACACAATCTGGTGGGATTTG+TGG - chr8_1:38453207-38453226 Msa1192590:CDS 45.0%
CACAATCTGGTGGGATTTGT+GGG - chr8_1:38453208-38453227 Msa1192590:CDS 45.0%
GCAATTGAGCTACCAAAACC+TGG - chr8_1:38453705-38453724 Msa1192590:CDS 45.0%
! TTACGGTTAGGACCAGGTTT+TGG + chr8_1:38453720-38453739 None:intergenic 45.0%
! ACCGGAAGCATGATATCAGA+AGG - chr8_1:38453775-38453794 Msa1192590:CDS 45.0%
! TGTTCCACTCCTTTTGTAGG+TGG - chr8_1:38453901-38453920 Msa1192590:CDS 45.0%
! GTTCCACTCCTTTTGTAGGT+GGG - chr8_1:38453902-38453921 Msa1192590:CDS 45.0%
CTTCATTGCCCACCTACAAA+AGG + chr8_1:38453913-38453932 None:intergenic 45.0%
GTTTGGAGGGTGGTGAAAAG+AGG + chr8_1:38452436-38452455 None:intergenic 50.0%
! CAGGGTGAGAGTGTGTGAAT+GGG + chr8_1:38452586-38452605 None:intergenic 50.0%
TCACCCTGCAAAACCTCATG+TGG - chr8_1:38452598-38452617 Msa1192590:intron 50.0%
! GGTACCACATGAGGTTTTGC+AGG + chr8_1:38452605-38452624 None:intergenic 50.0%
! TGATGGGTCGTAGAGTACCA+TGG + chr8_1:38452773-38452792 None:intergenic 50.0%
CTCGTGAAACAACAAGGTGG+TGG + chr8_1:38453030-38453049 None:intergenic 50.0%
!! GAGGTGTTGGTCCTTTGGAT+TGG - chr8_1:38453130-38453149 Msa1192590:intron 50.0%
GGAAACTTACGGTTAGGACC+AGG + chr8_1:38453726-38453745 None:intergenic 50.0%
TGTATCTCAGCTGCTGGAAC+CGG - chr8_1:38453757-38453776 Msa1192590:CDS 50.0%
TTGCCCACCTACAAAAGGAG+TGG + chr8_1:38453908-38453927 None:intergenic 50.0%
GTTTGGAGGGTGGTGAAAAG+AGG + chr8_1:38452436-38452455 None:intergenic 50.0%
! CAGGGTGAGAGTGTGTGAAT+GGG + chr8_1:38452586-38452605 None:intergenic 50.0%
TCACCCTGCAAAACCTCATG+TGG - chr8_1:38452598-38452617 Msa1192590:intron 50.0%
! GGTACCACATGAGGTTTTGC+AGG + chr8_1:38452605-38452624 None:intergenic 50.0%
! TGATGGGTCGTAGAGTACCA+TGG + chr8_1:38452773-38452792 None:intergenic 50.0%
CTCGTGAAACAACAAGGTGG+TGG + chr8_1:38453030-38453049 None:intergenic 50.0%
!! GAGGTGTTGGTCCTTTGGAT+TGG - chr8_1:38453130-38453149 Msa1192590:intron 50.0%
GGAAACTTACGGTTAGGACC+AGG + chr8_1:38453726-38453745 None:intergenic 50.0%
TGTATCTCAGCTGCTGGAAC+CGG - chr8_1:38453757-38453776 Msa1192590:CDS 50.0%
TTGCCCACCTACAAAAGGAG+TGG + chr8_1:38453908-38453927 None:intergenic 50.0%
! GCAGGGTGAGAGTGTGTGAA+TGG + chr8_1:38452587-38452606 None:intergenic 55.0%
TCTTTGGACACGGCACCAAG+TGG - chr8_1:38453810-38453829 Msa1192590:CDS 55.0%
! GCAGGGTGAGAGTGTGTGAA+TGG + chr8_1:38452587-38452606 None:intergenic 55.0%
TCTTTGGACACGGCACCAAG+TGG - chr8_1:38453810-38453829 Msa1192590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 38452421 38454042 38452421 ID=Msa1192590;Name=Msa1192590
chr8_1 mRNA 38452421 38454042 38452421 ID=Msa1192590-mRNA-1;Parent=Msa1192590;Name=Msa1192590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=84|0.5|0.33|0.66|1|1|3|0|326
chr8_1 exon 38452421 38452543 38452421 ID=Msa1192590-mRNA-1:exon:12548;Parent=Msa1192590-mRNA-1
chr8_1 exon 38452632 38452696 38452632 ID=Msa1192590-mRNA-1:exon:12547;Parent=Msa1192590-mRNA-1
chr8_1 exon 38453166 38454042 38453166 ID=Msa1192590-mRNA-1:exon:12546;Parent=Msa1192590-mRNA-1
chr8_1 five_prime_UTR 38453959 38454042 38453959 ID=Msa1192590-mRNA-1:five_prime_utr;Parent=Msa1192590-mRNA-1
chr8_1 CDS 38453166 38453958 38453166 ID=Msa1192590-mRNA-1:cds;Parent=Msa1192590-mRNA-1
chr8_1 CDS 38452632 38452696 38452632 ID=Msa1192590-mRNA-1:cds;Parent=Msa1192590-mRNA-1
chr8_1 CDS 38452421 38452543 38452421 ID=Msa1192590-mRNA-1:cds;Parent=Msa1192590-mRNA-1
Gene Sequence

>Msa1192590

ATGCATCATCTTCTAACACCATTCACAATCTTCAAACTCATTATACTAACACTCCATCTACAACTACTACAAGCCATTCCCATTCACACACTCTCACCCTGCAAAACCTCATGTGGTACCATTCCTATAAACTACCCATTCGGTTTGGAAGATGGTTGTGGAGCACCACAGTTCAGAAACATGTTCAACTGCACAACCACTGAGTTATTCTTTCAAACTCCTTCTGGTTCTTACAAAGTTCAATCCATTGACTACAACAAAAAAACCATGGTACTCTACGACCCATCAATGTCAACTTGCTCCATTCTTCAACCTCATCATGATTTTCTCATGACAGATATTCAATCTGCTATTATTCCTCCATCACAGGACACTGTTTTTGTTCTGTTAAATTGCTCTATAGACTCTCCTGTTCTTAACCATTACAAATATCTTTGTTTTAACTTTGAAGGACACACTTGTGATGAGCTTTATGGTGGTTGCAATGCTTTTAGGGTGTTTCATTTGATGACAAATAGCTCACCACCACCTTGTTGTTTCACGAGCTATAATACTGTGAAGTTTATGAGTATGAATATTTTGGATTGTACACATTATACTAGTGTGTTTAATAGTGATAAATTGAGAGGTGTTGGTCCTTTGGATTGGGTTTATGGGATTAAGCTTTCTTTTAGTGTGCCTGATACTGGATGTGAAAGTTGTACACAATCTGGTGGGATTTGTGGGTTTGATACTGAAACTGAAGGTCTTCTTTGTCTCTGCTCAAGTTTCACTAATTCAACAAGGGAATGTGCTGCTGGAACCGGAAGCATGATATCAGAAGGAGTGTACAATGCTCTTTGGACACGGCACCAAGTGGTGGGCAATGAAGATTATTCTCTGTACCTCTCTAGTGATATAAAGTTGCTAGTTTTCCAAAAAGAGACATCTTTCTGTTTTTACATGTTCACAATGAGCATGATGACAAATGGACTAATGTAA

Protein sequence

>Msa1192590

MHHLLTPFTIFKLIILTLHLQLLQAIPIHTLSPCKTSCGTIPINYPFGLEDGCGAPQFRNMFNCTTTELFFQTPSGSYKVQSIDYNKKTMVLYDPSMSTCSILQPHHDFLMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLMTNSSPPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDTGCESCTQSGGICGFDTETEGLLCLCSSFTNSTRECAAGTGSMISEGVYNALWTRHQVVGNEDYSLYLSSDIKLLVFQKETSFCFYMFTMSMMTNGLM*