AlfalfaGEDB | Msa0574580

M. sativa cultivar zhongmu-4 / Msa0574580

KEGG: -
GO: GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07887.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574580	XP_003630882.1	92.243	477	33	4	1	476	1	474	0.0	888

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574580	sp\|Q9C9T2\|SARD1_ARATH	50.812	431	192	11	1	425	1	417	9.02e-141	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574580	G7L9S5	92.243	477	33	4	1	476	1	474	0.0	888

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001380	Msa0574580	0.805045	1.613022e-49	-8.615850e-47
Msa0013280	Msa0574580	0.806930	6.476636e-50	-8.615850e-47
Msa0235720	Msa0574580	0.801625	8.242158e-49	-8.615850e-47
Msa0314180	Msa0574580	0.802315	5.947310e-49	-8.615850e-47
Msa0377800	Msa0574580	0.830585	2.703468e-55	-8.615850e-47
Msa0426600	Msa0574580	0.836035	1.184517e-56	-8.615850e-47
Msa0472910	Msa0574580	0.813855	2.072385e-51	-8.615850e-47
Msa0517570	Msa0574580	0.833788	4.359625e-56	-8.615850e-47
Msa0574570	Msa0574580	0.899048	2.912872e-77	-8.615850e-47
Msa0574580	Msa0574600	0.825124	5.562218e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574580	MtrunA17_Chr8g0391221	92.243	477	33	4	1	476	1	474	0.0	888
Msa0574580	MtrunA17_Chr8g0391211	87.002	477	56	6	1	475	72	544	0.0	837
Msa0574580	MtrunA17_Chr6g0484111	63.636	484	161	13	1	475	1	478	0.0	604
Msa0574580	MtrunA17_Chr6g0484131	63.410	481	159	11	1	475	1	470	0.0	594
Msa0574580	MtrunA17_Chr6g0484121	63.202	481	160	11	1	475	1	470	0.0	588
Msa0574580	MtrunA17_Chr2g0281171	44.522	429	213	9	4	427	16	424	1.54e-117	358
Msa0574580	MtrunA17_Chr4g0048161	46.114	386	196	5	2	384	13	389	4.24e-114	349
Msa0574580	MtrunA17_Chr4g0072691	48.739	357	177	4	31	384	4	357	3.70e-112	343
Msa0574580	MtrunA17_Chr2g0304831	39.627	482	247	11	4	447	11	486	1.04e-107	332
Msa0574580	MtrunA17_Chr4g0059411	48.930	327	153	7	1	326	1	314	1.19e-91	288

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574580	AT1G73805.1	50.812	431	192	11	1	425	1	417	9.17e-142	414
Msa0574580	AT5G57580.1	48.837	387	182	7	3	384	12	387	4.51e-116	355
Msa0574580	AT4G25800.1	47.409	386	187	7	4	384	2	376	1.50e-112	345
Msa0574580	AT4G25800.2	47.409	386	187	7	4	384	2	376	1.50e-112	345
Msa0574580	AT2G18750.3	45.910	379	193	6	8	384	21	389	3.62e-110	339
Msa0574580	AT2G18750.2	45.910	379	193	6	8	384	21	389	3.62e-110	339
Msa0574580	AT2G18750.1	45.910	379	193	6	8	384	21	389	3.62e-110	339
Msa0574580	AT2G24300.3	43.814	388	209	5	4	387	7	389	4.23e-102	318
Msa0574580	AT2G24300.2	43.814	388	209	5	4	387	3	385	5.13e-102	317
Msa0574580	AT4G31000.1	42.607	399	213	8	17	409	21	409	6.37e-98	306

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Find 123 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACGAAGCAAAAGA+AGG	0.565396	4_1:-78184782	None:intergenic
AACAAACTCTATGTCTACCG+TGG	0.698607	4_1:+78186943	Msa0574580:CDS
AACAATAATAATGCACAAAT+AGG	0.341633	4_1:+78187524	Msa0574580:CDS
AACACTGGCCAAGTAAAGGC+AGG	0.542793	4_1:-78188066	None:intergenic
AACATGAATTGCAAACTTAA+TGG	0.225284	4_1:-78185311	None:intergenic
AACGTTGCTTTGTTAACTCA+AGG	0.528420	4_1:+78187235	Msa0574580:CDS
AAGAAAACTCACATTCGCCA+CGG	0.670555	4_1:-78185766	None:intergenic
AAGACAAACCAAATGACAAA+CGG	0.546324	4_1:+78184741	Msa0574580:CDS
AAGGTTCCAAGCCAGAGAAA+AGG	0.490929	4_1:-78185004	None:intergenic
AATCTGGGAAGCTGTAAGGT+AGG	0.616693	4_1:-78187595	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACAAACCAAATGACAAA+CGG	+	chr4_1:78184741-78184760	Msa0574580:CDS	30.0%
AAAACATACGAAGCAAAAGA+AGG	-	chr4_1:78184785-78184804	None:intergenic	30.0%
AATTACTCTCAATTCTCATG+TGG	+	chr4_1:78184939-78184958	Msa0574580:intron	30.0%
AGATAAATTTAGTCACGGTA+CGG	-	chr4_1:78185101-78185120	None:intergenic	30.0%
AACATGTCTTTGATATGATC+AGG	+	chr4_1:78185196-78185215	Msa0574580:intron	30.0%
ATAGAAATTGTAGTCCTTGA+TGG	+	chr4_1:78185467-78185486	Msa0574580:CDS	30.0%
CTAGTGAAAATGAATCATCA+TGG	+	chr4_1:78185501-78185520	Msa0574580:CDS	30.0%
GAGAATTGAATCTTACTATG+AGG	+	chr4_1:78185588-78185607	Msa0574580:CDS	30.0%
ATCCTTAACAACAAAAGCTT+CGG	-	chr4_1:78185744-78185763	None:intergenic	30.0%
CTAACATATTGGATTCTCAT+TGG	-	chr4_1:78185820-78185839	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	78184557	78188131	78184557	ID=Msa0574580;Name=Msa0574580
chr4_1	mRNA	78184557	78188131	78184557	ID=Msa0574580-mRNA-1;Parent=Msa0574580;Name=Msa0574580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144\|1\|1\|1\|0.85\|0.75\|8\|459\|476
chr4_1	exon	78184557	78184795	78184557	ID=Msa0574580-mRNA-1:exon:27656;Parent=Msa0574580-mRNA-1
chr4_1	exon	78184965	78185040	78184965	ID=Msa0574580-mRNA-1:exon:27657;Parent=Msa0574580-mRNA-1
chr4_1	exon	78185218	78185776	78185218	ID=Msa0574580-mRNA-1:exon:27658;Parent=Msa0574580-mRNA-1
chr4_1	exon	78186336	78186496	78186336	ID=Msa0574580-mRNA-1:exon:27659;Parent=Msa0574580-mRNA-1
chr4_1	exon	78186871	78187068	78186871	ID=Msa0574580-mRNA-1:exon:27660;Parent=Msa0574580-mRNA-1
chr4_1	exon	78187157	78187256	78187157	ID=Msa0574580-mRNA-1:exon:27661;Parent=Msa0574580-mRNA-1
chr4_1	exon	78187411	78187992	78187411	ID=Msa0574580-mRNA-1:exon:27662;Parent=Msa0574580-mRNA-1
chr4_1	exon	78188013	78188131	78188013	ID=Msa0574580-mRNA-1:exon:27663;Parent=Msa0574580-mRNA-1
chr4_1	five_prime_UTR	78184557	78184700	78184557	ID=Msa0574580-mRNA-1:five_prime_utr;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78184701	78184795	78184701	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78184965	78185040	78184965	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78185218	78185776	78185218	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78186336	78186496	78186336	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78186871	78187068	78186871	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78187157	78187256	78187157	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	CDS	78187411	78187652	78187411	ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1
chr4_1	three_prime_UTR	78187653	78187992	78187653	ID=Msa0574580-mRNA-1:three_prime_utr;Parent=Msa0574580-mRNA-1
chr4_1	three_prime_UTR	78188013	78188131	78188013	ID=Msa0574580-mRNA-1:three_prime_utr;Parent=Msa0574580-mRNA-1

Gene Sequence

>Msa0574580

ATGGCTGCAAAACGGTTTTTCGATGATTCTAATCAAGACAAAGACAAACCAAATGACAAACGGATAAGAACTGCAACAATACCTTCTTTTGCTTCGGTGATAGGAGAAGTGGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAATGAAGAGGTTGAACGAGCAATGAGACAATGTTATCCACCACGATCAATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAACAACCATTAAGTTTGCAATTCATGTTCAAAAATAAACTTTCACTTCCAATATTCACAGGTAGCAAAATACTAGACACGGATGGAAACCCAATCAGTGTGATTCTTGTTGACCAAAGCAATGACCAAATAGTCCCTACAAGTCTAGCACACCCAATCAAGATAGAAATTGTAGTCCTTGATGGAGATTTTCCTTCTAGTGAAAATGAATCATCATGGACTAGTGAGGAATTCAATAACAGTATTGTGAAAGAGAGAACTGGGAAAAGGCCATTGCTTACAGGAGAATTGAATCTTACTATGAGGGATGGAATTGCACCAATTGGGGATATAGAGTTCACCGATAATTCTAGCTGGATACGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCCGAATTTGTGAAGGCATGACCGAAGCTTTTGTTGTTAAGGATCACCGTGGCGAATTGTACAAGAAACATCATCCACCAAGTCTAAAGGATGAAGTTTGGCGTTTAGAGAAGATTGGTAAAGACGGAGCTTTTCACAAAAAGTTGACTTCAGAAGGGATTACAACAGTTCAAGAGTTTCTCAAGTTGTCTGTAGTTGACCCTCTTAGGCTCAGAAAGATTTTAGGCGTTGGTATGTCTGAGAAAATGTGGGATGTGACAATTAAGCATGCAAAGACTTGTGTAATGGGAAACAAACTCTATGTCTACCGTGGTCCTCAATTTACCATCCATTTGAATGCAATATGCCAAATGGTTAGAGCTAACATCAATGGCCAAACCATTCCCATCCGAGACATTAACAACATATTGGGCAAGAGCTACATACAAAACTATGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGATGTTTTGAATGACAACGTTGCTTTGTTAACTCAAGGTGAAACCACGGAGCAATTTCCAAACAATAATCATCAAGCACCAGTTATAACATACGATCAAAACAACTATTTTGGTGATAACTCTCTAGAGACCGGCAACTATGTAGCAAACAACAATAATAATGCACAAATAGGTTGCATCGACTGGTCATCATCATTTGCCACATCACCATTCATGAATGGCCTACCTTACAGCTTCCCAGATTCACAATCAGACGGTGGTGATATAACACCTCATTGA

Protein sequence

>Msa0574580

MAAKRFFDDSNQDKDKPNDKRIRTATIPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLQAMEQPLSLQFMFKNKLSLPIFTGSKILDTDGNPISVILVDQSNDQIVPTSLAHPIKIEIVVLDGDFPSSENESSWTSEEFNNSIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRICEGMTEAFVVKDHRGELYKKHHPPSLKDEVWRLEKIGKDGAFHKKLTSEGITTVQEFLKLSVVDPLRLRKILGVGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPIRDINNILGKSYIQNYVREAYARWNELEEIDDVLNDNVALLTQGETTEQFPNNNHQAPVITYDQNNYFGDNSLETGNYVANNNNNAQIGCIDWSSSFATSPFMNGLPYSFPDSQSDGGDITPH*