Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574580 | XP_003630882.1 | 92.243 | 477 | 33 | 4 | 1 | 476 | 1 | 474 | 0.0 | 888 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574580 | sp|Q9C9T2|SARD1_ARATH | 50.812 | 431 | 192 | 11 | 1 | 425 | 1 | 417 | 9.02e-141 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574580 | G7L9S5 | 92.243 | 477 | 33 | 4 | 1 | 476 | 1 | 474 | 0.0 | 888 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0574580 | 0.805045 | 1.613022e-49 | -8.615850e-47 |
| Msa0013280 | Msa0574580 | 0.806930 | 6.476636e-50 | -8.615850e-47 |
| Msa0235720 | Msa0574580 | 0.801625 | 8.242158e-49 | -8.615850e-47 |
| Msa0377800 | Msa0574580 | 0.830585 | 2.703468e-55 | -8.615850e-47 |
| Msa0426600 | Msa0574580 | 0.836035 | 1.184517e-56 | -8.615850e-47 |
| Msa0472910 | Msa0574580 | 0.813855 | 2.072385e-51 | -8.615850e-47 |
| Msa0314180 | Msa0574580 | 0.802315 | 5.947310e-49 | -8.615850e-47 |
| Msa0517570 | Msa0574580 | 0.833788 | 4.359625e-56 | -8.615850e-47 |
| Msa0574570 | Msa0574580 | 0.899048 | 2.912872e-77 | -8.615850e-47 |
| Msa0574580 | Msa0574600 | 0.825124 | 5.562218e-54 | -8.615850e-47 |
| Msa0574580 | Msa0580920 | 0.801769 | 7.701072e-49 | -8.615850e-47 |
| Msa0574580 | Msa0662580 | 0.816157 | 6.392476e-52 | -8.615850e-47 |
| Msa0574580 | Msa0708290 | 0.845677 | 3.499373e-59 | -8.615850e-47 |
| Msa0574580 | Msa0708300 | 0.882874 | 7.223105e-71 | -8.615850e-47 |
| Msa0574580 | Msa0708310 | 0.801555 | 8.519134e-49 | -8.615850e-47 |
| Msa0574580 | Msa0825870 | 0.807817 | 4.199993e-50 | -8.615850e-47 |
| Msa0574580 | Msa0936530 | 0.868482 | 6.318619e-66 | -8.615850e-47 |
| Msa0574580 | Msa0936550 | 0.864351 | 1.294821e-64 | -8.615850e-47 |
| Msa0574580 | Msa0964490 | 0.802767 | 4.798235e-49 | -8.615850e-47 |
| Msa0574580 | Msa0973520 | 0.831408 | 1.698090e-55 | -8.615850e-47 |
| Msa0574580 | Msa0982780 | 0.811225 | 7.788451e-51 | -8.615850e-47 |
| Msa0574580 | Msa1017160 | 0.803251 | 3.812073e-49 | -8.615850e-47 |
| Msa0574580 | Msa1201200 | 0.818688 | 1.720105e-52 | -8.615850e-47 |
| Msa0574580 | Msa1236730 | 0.807540 | 4.808394e-50 | -8.615850e-47 |
| Msa0574580 | Msa1246700 | 0.801935 | 7.119984e-49 | -8.615850e-47 |
| Msa0574580 | Msa1353870 | 0.839856 | 1.233727e-57 | -8.615850e-47 |
| Msa0574580 | Msa1353880 | 0.907160 | 6.839170e-81 | -8.615850e-47 |
| Msa0574580 | Msa1353890 | 0.805194 | 1.501732e-49 | -8.615850e-47 |
| Msa0574580 | Msa1365270 | 0.805760 | 1.142552e-49 | -8.615850e-47 |
| Msa0574580 | Msa1376450 | 0.811497 | 6.796069e-51 | -8.615850e-47 |
| Msa0574580 | Msa1398900 | 0.812933 | 3.303531e-51 | -8.615850e-47 |
| Msa0574580 | Msa1408180 | 0.808206 | 3.469937e-50 | -8.615850e-47 |
| Msa0574580 | Msa1448980 | 0.802490 | 5.472252e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574580 | MtrunA17_Chr8g0391221 | 92.243 | 477 | 33 | 4 | 1 | 476 | 1 | 474 | 0.0 | 888 |
| Msa0574580 | MtrunA17_Chr8g0391211 | 87.002 | 477 | 56 | 6 | 1 | 475 | 72 | 544 | 0.0 | 837 |
| Msa0574580 | MtrunA17_Chr6g0484111 | 63.636 | 484 | 161 | 13 | 1 | 475 | 1 | 478 | 0.0 | 604 |
| Msa0574580 | MtrunA17_Chr6g0484131 | 63.410 | 481 | 159 | 11 | 1 | 475 | 1 | 470 | 0.0 | 594 |
| Msa0574580 | MtrunA17_Chr6g0484121 | 63.202 | 481 | 160 | 11 | 1 | 475 | 1 | 470 | 0.0 | 588 |
| Msa0574580 | MtrunA17_Chr2g0281171 | 44.522 | 429 | 213 | 9 | 4 | 427 | 16 | 424 | 1.54e-117 | 358 |
| Msa0574580 | MtrunA17_Chr4g0048161 | 46.114 | 386 | 196 | 5 | 2 | 384 | 13 | 389 | 4.24e-114 | 349 |
| Msa0574580 | MtrunA17_Chr4g0072691 | 48.739 | 357 | 177 | 4 | 31 | 384 | 4 | 357 | 3.70e-112 | 343 |
| Msa0574580 | MtrunA17_Chr2g0304831 | 39.627 | 482 | 247 | 11 | 4 | 447 | 11 | 486 | 1.04e-107 | 332 |
| Msa0574580 | MtrunA17_Chr4g0059411 | 48.930 | 327 | 153 | 7 | 1 | 326 | 1 | 314 | 1.19e-91 | 288 |
| Msa0574580 | MtrunA17_Chr7g0271691 | 35.933 | 359 | 213 | 8 | 50 | 403 | 44 | 390 | 2.14e-55 | 193 |
| Msa0574580 | MtrunA17_Chr7g0271671 | 35.465 | 344 | 197 | 11 | 50 | 381 | 60 | 390 | 8.66e-46 | 167 |
| Msa0574580 | MtrunA17_Chr7g0271681 | 39.623 | 265 | 148 | 6 | 92 | 350 | 10 | 268 | 2.25e-45 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574580 | AT1G73805.1 | 50.812 | 431 | 192 | 11 | 1 | 425 | 1 | 417 | 9.17e-142 | 414 |
| Msa0574580 | AT5G57580.1 | 48.837 | 387 | 182 | 7 | 3 | 384 | 12 | 387 | 4.51e-116 | 355 |
| Msa0574580 | AT4G25800.1 | 47.409 | 386 | 187 | 7 | 4 | 384 | 2 | 376 | 1.50e-112 | 345 |
| Msa0574580 | AT4G25800.2 | 47.409 | 386 | 187 | 7 | 4 | 384 | 2 | 376 | 1.50e-112 | 345 |
| Msa0574580 | AT2G18750.3 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 3.62e-110 | 339 |
| Msa0574580 | AT2G18750.2 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 3.62e-110 | 339 |
| Msa0574580 | AT2G18750.1 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 3.62e-110 | 339 |
| Msa0574580 | AT2G24300.3 | 43.814 | 388 | 209 | 5 | 4 | 387 | 7 | 389 | 4.23e-102 | 318 |
| Msa0574580 | AT2G24300.2 | 43.814 | 388 | 209 | 5 | 4 | 387 | 3 | 385 | 5.13e-102 | 317 |
| Msa0574580 | AT4G31000.1 | 42.607 | 399 | 213 | 8 | 17 | 409 | 21 | 409 | 6.37e-98 | 306 |
| Msa0574580 | AT5G62570.1 | 42.239 | 393 | 204 | 9 | 1 | 385 | 1 | 378 | 1.61e-93 | 293 |
| Msa0574580 | AT5G62570.4 | 42.328 | 378 | 196 | 8 | 1 | 370 | 1 | 364 | 4.30e-93 | 287 |
| Msa0574580 | AT5G62570.2 | 43.396 | 371 | 195 | 7 | 21 | 385 | 2 | 363 | 9.45e-93 | 290 |
| Msa0574580 | AT2G24300.1 | 43.243 | 333 | 184 | 3 | 58 | 387 | 8 | 338 | 9.95e-87 | 276 |
| Msa0574580 | AT5G62570.3 | 44.089 | 313 | 157 | 7 | 1 | 309 | 1 | 299 | 1.20e-73 | 234 |
| Msa0574580 | AT4G31000.2 | 38.827 | 358 | 190 | 8 | 58 | 409 | 54 | 388 | 1.63e-73 | 241 |
| Msa0574580 | AT5G26920.3 | 37.057 | 367 | 199 | 10 | 29 | 385 | 24 | 368 | 1.44e-71 | 233 |
| Msa0574580 | AT5G26920.1 | 37.057 | 367 | 199 | 10 | 29 | 385 | 24 | 368 | 1.02e-70 | 235 |
| Msa0574580 | AT5G26920.2 | 36.785 | 367 | 192 | 11 | 29 | 385 | 24 | 360 | 5.86e-68 | 227 |
Find 123 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAGATTTGTTTGAAATA+TGG | 0.161697 | 4_1:+78188007 | Msa0574580:intron |
| TACGATCAAAACAACTATTT+TGG | 0.180587 | 4_1:+78187464 | Msa0574580:CDS |
| TCCTAAATTCTTTACCAAAA+TGG | 0.210918 | 4_1:+78184682 | Msa0574580:exon |
| AACATGAATTGCAAACTTAA+TGG | 0.225284 | 4_1:-78185311 | None:intergenic |
| CTAGACTTGTAGGGACTATT+TGG | 0.240414 | 4_1:-78185430 | None:intergenic |
| CCACCGTCTGATTGTGAATC+TGG | 0.259554 | 4_1:-78187611 | None:intergenic |
| GTAAGATTTGTTTGAAATAT+GGG | 0.315084 | 4_1:+78188008 | Msa0574580:intron |
| GGGAAAAGGCCATTGCTTAC+AGG | 0.316410 | 4_1:+78185566 | Msa0574580:CDS |
| TGGGAAAAGAAGAAGCTTCT+AGG | 0.321871 | 4_1:-78184558 | None:intergenic |
| ACTACAATTTCTATCTTGAT+TGG | 0.325646 | 4_1:-78185458 | None:intergenic |
| GTTCTTATCCGTTTGTCATT+TGG | 0.329603 | 4_1:-78184749 | None:intergenic |
| CCGAGACATTAACAACATAT+TGG | 0.336958 | 4_1:+78187041 | Msa0574580:CDS |
| AACAATAATAATGCACAAAT+AGG | 0.341633 | 4_1:+78187524 | Msa0574580:CDS |
| GGACTATTTGGTCATTGCTT+TGG | 0.356048 | 4_1:-78185418 | None:intergenic |
| GTTGTTTGCTACATAGTTGC+CGG | 0.357366 | 4_1:-78187504 | None:intergenic |
| ATTGGGTGTGCTAGACTTGT+AGG | 0.364352 | 4_1:-78185440 | None:intergenic |
| TGTCTGTAGTTGACCCTCTT+AGG | 0.365818 | 4_1:+78186465 | Msa0574580:CDS |
| ATAGAAATTGTAGTCCTTGA+TGG | 0.367797 | 4_1:+78185467 | Msa0574580:CDS |
| GCTTGCTTTGATGTTATTGT+TGG | 0.368262 | 4_1:-78184656 | None:intergenic |
| CGGTCATGCCTTCACAAATT+CGG | 0.369289 | 4_1:-78185721 | None:intergenic |
| AGGGATGGAATTGCACCAAT+TGG | 0.372898 | 4_1:+78185608 | Msa0574580:CDS |
| CATGCAAAGACTTGTGTAAT+GGG | 0.381122 | 4_1:+78186919 | Msa0574580:CDS |
| AATGCAAACCTGCCTTTACT+TGG | 0.383246 | 4_1:+78188058 | Msa0574580:three_prime_UTR |
| ACGTATCCAGCTAGAATTAT+CGG | 0.390207 | 4_1:-78185645 | None:intergenic |
| CGAGACATTAACAACATATT+GGG | 0.396976 | 4_1:+78187042 | Msa0574580:CDS |
| TGATGTTAGCTCTAACCATT+TGG | 0.400701 | 4_1:-78186999 | None:intergenic |
| TCAACAAGAATCACACTGAT+TGG | 0.402570 | 4_1:-78185395 | None:intergenic |
| TTCTCATGTGGCAGGGTGAT+AGG | 0.406355 | 4_1:+78184951 | Msa0574580:intron |
| CACAAATAGGTTGCATCGAC+TGG | 0.407081 | 4_1:+78187537 | Msa0574580:CDS |
| CTACAATTTCTATCTTGATT+GGG | 0.407874 | 4_1:-78185457 | None:intergenic |
| TTTGGCATATTGCATTCAAA+TGG | 0.408571 | 4_1:-78186981 | None:intergenic |
| GTGATATAACACCTCATTGA+TGG | 0.429717 | 4_1:+78187633 | Msa0574580:CDS |
| GGGATGGAATTGCACCAATT+GGG | 0.430451 | 4_1:+78185609 | Msa0574580:CDS |
| AGTATTGTGAAAGAGAGAAC+TGG | 0.434542 | 4_1:+78185545 | Msa0574580:CDS |
| GGTGCTTGATGATTATTGTT+TGG | 0.438338 | 4_1:-78187431 | None:intergenic |
| CAAGTCTAAAGGATGAAGTT+TGG | 0.439885 | 4_1:+78186357 | Msa0574580:CDS |
| ACTTCATCCTTTAGACTTGG+TGG | 0.444061 | 4_1:-78186353 | None:intergenic |
| GTTTGGCGTTTAGAGAAGAT+TGG | 0.451746 | 4_1:+78186374 | Msa0574580:CDS |
| TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | 4_1:+78187176 | Msa0574580:CDS |
| GCATGCAAAGACTTGTGTAA+TGG | 0.469359 | 4_1:+78186918 | Msa0574580:CDS |
| GGTGATAGGAGAAGTGGTTA+TGG | 0.471004 | 4_1:+78184965 | Msa0574580:CDS |
| TTTGAATGCAATATGCCAAA+TGG | 0.472527 | 4_1:+78186984 | Msa0574580:CDS |
| GTTATTGTTGGTTTAAGAAA+AGG | 0.478558 | 4_1:-78184644 | None:intergenic |
| GAGAATTGAATCTTACTATG+AGG | 0.479870 | 4_1:+78185588 | Msa0574580:CDS |
| ATCCTTAACAACAAAAGCTT+CGG | 0.480776 | 4_1:-78185741 | None:intergenic |
| CAACAAGAATCACACTGATT+GGG | 0.484318 | 4_1:-78185394 | None:intergenic |
| ACCTCATTGATGGAGCTTCA+AGG | 0.484972 | 4_1:+78187643 | Msa0574580:exon |
| GCCACATCACCATTCATGAA+TGG | 0.487146 | 4_1:+78187572 | Msa0574580:CDS |
| AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | 4_1:-78185004 | None:intergenic |
| CAAACTTCATCCTTTAGACT+TGG | 0.497266 | 4_1:-78186356 | None:intergenic |
| TGTCTCGGATGGGAATGGTT+TGG | 0.499358 | 4_1:-78187026 | None:intergenic |
| GTGAACTCTATATCCCCAAT+TGG | 0.500957 | 4_1:-78185623 | None:intergenic |
| GCATATTGCATTCAAATGGA+TGG | 0.501335 | 4_1:-78186977 | None:intergenic |
| ACATCATCCACCAAGTCTAA+AGG | 0.508840 | 4_1:+78186346 | Msa0574580:CDS |
| CTTACCACTCTTCTAAGTAA+AGG | 0.510684 | 4_1:-78185023 | None:intergenic |
| CCAATATGTTGTTAATGTCT+CGG | 0.516743 | 4_1:-78187041 | None:intergenic |
| ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | 4_1:-78185281 | None:intergenic |
| TGAAAGAGAGAACTGGGAAA+AGG | 0.520203 | 4_1:+78185552 | Msa0574580:CDS |
| AGGTTGCAGTGAGTAGCTAT+AGG | 0.521995 | 4_1:-78184624 | None:intergenic |
| CACCGTCTGATTGTGAATCT+GGG | 0.522998 | 4_1:-78187610 | None:intergenic |
| CGGACACTTTGATTAGTCCC+AGG | 0.523841 | 4_1:-78185701 | None:intergenic |
| AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | 4_1:+78187235 | Msa0574580:CDS |
| TAGCAACACTGGCCAAGTAA+AGG | 0.534865 | 4_1:-78188070 | None:intergenic |
| TATGTTGTTAATGTCTCGGA+TGG | 0.535743 | 4_1:-78187037 | None:intergenic |
| ATGGTTAGAGCTAACATCAA+TGG | 0.535787 | 4_1:+78187003 | Msa0574580:CDS |
| GTCACCTTTCTGAGCCTAAG+AGG | 0.537802 | 4_1:-78186479 | None:intergenic |
| GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | 4_1:+78185683 | Msa0574580:CDS |
| TTGGGTGTGCTAGACTTGTA+GGG | 0.539741 | 4_1:-78185439 | None:intergenic |
| AACACTGGCCAAGTAAAGGC+AGG | 0.542793 | 4_1:-78188066 | None:intergenic |
| CTTTCACTTCCAATATTCAC+AGG | 0.543526 | 4_1:+78185344 | Msa0574580:CDS |
| AAGACAAACCAAATGACAAA+CGG | 0.546324 | 4_1:+78184741 | Msa0574580:CDS |
| TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | 4_1:+78187189 | Msa0574580:CDS |
| TAAGGTAGGCCATTCATGAA+TGG | 0.552824 | 4_1:-78187581 | None:intergenic |
| GGTGATAACTCTCTAGAGAC+CGG | 0.552866 | 4_1:+78187485 | Msa0574580:CDS |
| GTTAATGTCTCGGATGGGAA+TGG | 0.555065 | 4_1:-78187031 | None:intergenic |
| AGTTCACCGATAATTCTAGC+TGG | 0.556731 | 4_1:+78185639 | Msa0574580:CDS |
| TATGATAAACATAGCAACAC+TGG | 0.558505 | 4_1:-78188081 | None:intergenic |
| TCTCTGTTTCTAGTTAGACT+AGG | 0.558774 | 4_1:+78187962 | Msa0574580:three_prime_UTR |
| TTCAAATGGATGGTAAATTG+AGG | 0.559963 | 4_1:-78186967 | None:intergenic |
| AAAACATACGAAGCAAAAGA+AGG | 0.565396 | 4_1:-78184782 | None:intergenic |
| AGAATTGAATCTTACTATGA+GGG | 0.565949 | 4_1:+78185589 | Msa0574580:CDS |
| TTACCAAAATGGCTGCAAAA+CGG | 0.566987 | 4_1:+78184693 | Msa0574580:exon |
| TGTGAATCTGGGAAGCTGTA+AGG | 0.567774 | 4_1:-78187599 | None:intergenic |
| TAGAAGGAAAATCTCCATCA+AGG | 0.570001 | 4_1:-78185481 | None:intergenic |
| GCTATAGGTGGAGGAATGAA+AGG | 0.571331 | 4_1:-78184609 | None:intergenic |
| TTGAATCTTACTATGAGGGA+TGG | 0.576141 | 4_1:+78185593 | Msa0574580:CDS |
| GGATGGAATTGCACCAATTG+GGG | 0.580908 | 4_1:+78185610 | Msa0574580:CDS |
| TTCAATTCTCCTGTAAGCAA+TGG | 0.582190 | 4_1:-78185575 | None:intergenic |
| TTCATTGAGACTTCAAGCAA+TGG | 0.589164 | 4_1:+78185283 | Msa0574580:CDS |
| CTAGTGAAAATGAATCATCA+TGG | 0.589991 | 4_1:+78185501 | Msa0574580:CDS |
| GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | 4_1:+78185019 | Msa0574580:CDS |
| CAGTGAGTAGCTATAGGTGG+AGG | 0.596371 | 4_1:-78184618 | None:intergenic |
| TTGGTATGTCTGAGAAAATG+TGG | 0.600385 | 4_1:+78186881 | Msa0574580:CDS |
| GGTGACTTTGTTATTGATCG+TGG | 0.600634 | 4_1:-78185260 | None:intergenic |
| CAAAGTGTCCGAATTTGTGA+AGG | 0.603077 | 4_1:+78185713 | Msa0574580:CDS |
| TGGCAGGGTGATAGGAGAAG+TGG | 0.605295 | 4_1:+78184959 | Msa0574580:intron |
| TCACCTTTCTGAGCCTAAGA+GGG | 0.607497 | 4_1:-78186478 | None:intergenic |
| AATCTGGGAAGCTGTAAGGT+AGG | 0.616693 | 4_1:-78187595 | None:intergenic |
| TGACCCTCTTAGGCTCAGAA+AGG | 0.618260 | 4_1:+78186475 | Msa0574580:CDS |
| ATATGCTAGATGGAATGAGT+TGG | 0.618437 | 4_1:+78187186 | Msa0574580:CDS |
| GACTTTGTTATTGATCGTGG+TGG | 0.621283 | 4_1:-78185257 | None:intergenic |
| ACAATAACATCAAAGCAAGC+TGG | 0.621523 | 4_1:+78184659 | Msa0574580:five_prime_UTR |
| TTGCAGTGAGTAGCTATAGG+TGG | 0.624654 | 4_1:-78184621 | None:intergenic |
| TTAGAGAAGATTGGTAAAGA+CGG | 0.625104 | 4_1:+78186383 | Msa0574580:CDS |
| TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | 4_1:+78185684 | Msa0574580:CDS |
| GTATTGTGAAAGAGAGAACT+GGG | 0.633058 | 4_1:+78185546 | Msa0574580:CDS |
| AGCAAAATACTAGACACGGA+TGG | 0.635352 | 4_1:+78185368 | Msa0574580:CDS |
| TGAATCATCATGGACTAGTG+AGG | 0.636414 | 4_1:+78185511 | Msa0574580:CDS |
| TTCCCAGATTCACAATCAGA+CGG | 0.636484 | 4_1:+78187608 | Msa0574580:CDS |
| GCCATTCATGAATGGTGATG+TGG | 0.641806 | 4_1:-78187573 | None:intergenic |
| CATTAACAACATATTGGGCA+AGG | 0.646803 | 4_1:+78187047 | Msa0574580:CDS |
| ATGTTGTTAATGTCTCGGAT+GGG | 0.656086 | 4_1:-78187036 | None:intergenic |
| TCAATATACAGGTGAAACCA+CGG | 0.656951 | 4_1:+78187400 | Msa0574580:intron |
| ACCTTGAAGCTCCATCAATG+AGG | 0.663424 | 4_1:-78187644 | None:intergenic |
| AGGTAGCAAAATACTAGACA+CGG | 0.663844 | 4_1:+78185364 | Msa0574580:CDS |
| ATATGATCAGGTGAATGAAG+AGG | 0.666275 | 4_1:+78185208 | Msa0574580:intron |
| AAGAAAACTCACATTCGCCA+CGG | 0.670555 | 4_1:-78185766 | None:intergenic |
| ATTGTTTGGAAATTGCTCCG+TGG | 0.684187 | 4_1:-78187417 | None:intergenic |
| TGGTATGTCTGAGAAAATGT+GGG | 0.686403 | 4_1:+78186882 | Msa0574580:CDS |
| AACAAACTCTATGTCTACCG+TGG | 0.698607 | 4_1:+78186943 | Msa0574580:CDS |
| GGATGGTAAATTGAGGACCA+CGG | 0.711077 | 4_1:-78186960 | None:intergenic |
| CCAGATTCACAATCAGACGG+TGG | 0.723625 | 4_1:+78187611 | Msa0574580:CDS |
| TTTGTTGTTAAGGATCACCG+TGG | 0.748264 | 4_1:+78185749 | Msa0574580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATTTCAAAATTA+TGG | - | chr4_1:78185072-78185091 | None:intergenic | 10.0% |
| !! | ATAAAAAATAATGAATAGTT+AGG | - | chr4_1:78186533-78186552 | None:intergenic | 10.0% |
| !! | TATACATCATTTATAATTAT+TGG | - | chr4_1:78186783-78186802 | None:intergenic | 10.0% |
| !! | TATAAATGATGTATATTTAT+AGG | + | chr4_1:78186788-78186807 | Msa0574580:intron | 10.0% |
| !!! | TCATTTTTTTATATATAGCT+TGG | + | chr4_1:78184876-78184895 | Msa0574580:intron | 15.0% |
| !! | TATAAATTAGAATATCTTGA+AGG | - | chr4_1:78185910-78185929 | None:intergenic | 15.0% |
| !!! | TTTCTCTATGATTTTTTTTT+TGG | + | chr4_1:78185988-78186007 | Msa0574580:intron | 15.0% |
| !!! | TTAATTTATTTTAAGGTTGT+TGG | + | chr4_1:78186186-78186205 | Msa0574580:intron | 15.0% |
| !!! | TAATTTATTTTAAGGTTGTT+GGG | + | chr4_1:78186187-78186206 | Msa0574580:intron | 15.0% |
| !! | CATTATTAATGTTCAATAAA+TGG | + | chr4_1:78186576-78186595 | Msa0574580:intron | 15.0% |
| !! | TCCTTCAAAAAAAAAATAAA+TGG | + | chr4_1:78186607-78186626 | Msa0574580:intron | 15.0% |
| !!! | ACCATTTATTTTTTTTTTGA+AGG | - | chr4_1:78186611-78186630 | None:intergenic | 15.0% |
| !! | AAATAACATTCTCAATTATA+TGG | + | chr4_1:78186836-78186855 | Msa0574580:intron | 15.0% |
| !! | TATATAAAAAATTTAGCAGT+TGG | + | chr4_1:78187701-78187720 | Msa0574580:three_prime_UTR | 15.0% |
| !!! | ATTTTTTTTTTCTACAAAAG+AGG | - | chr4_1:78188041-78188060 | None:intergenic | 15.0% |
| !!! | ACGATTTGAGTTTTATATAT+GGG | - | chr4_1:78184580-78184599 | None:intergenic | 20.0% |
| !! | TGATAGAATGAATGAATATT+GGG | - | chr4_1:78184831-78184850 | None:intergenic | 20.0% |
| !! | ATGATAGAATGAATGAATAT+TGG | - | chr4_1:78184832-78184851 | None:intergenic | 20.0% |
| !! | AAAATTATGGTAAAGTTGAA+TGG | - | chr4_1:78185059-78185078 | None:intergenic | 20.0% |
| !! | ACTGTTAATTAATGATTAGT+TGG | + | chr4_1:78186143-78186162 | Msa0574580:intron | 20.0% |
| !! | TTGGGTTATAACTAAAATAA+AGG | + | chr4_1:78186205-78186224 | Msa0574580:intron | 20.0% |
| !! | ACTAAAATAAAGGATCATAT+AGG | + | chr4_1:78186215-78186234 | Msa0574580:intron | 20.0% |
| !! | CTAAAATAAAGGATCATATA+GGG | + | chr4_1:78186216-78186235 | Msa0574580:intron | 20.0% |
| !! | CTATTACTATAAGACTAAAA+AGG | - | chr4_1:78186246-78186265 | None:intergenic | 20.0% |
| !!! | GCACAATGTATTTTTATATA+CGG | + | chr4_1:78186706-78186725 | Msa0574580:intron | 20.0% |
| !! | AAAAATCAATGCATAGAAAA+AGG | - | chr4_1:78187110-78187129 | None:intergenic | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | - | chr4_1:78187135-78187154 | None:intergenic | 20.0% |
| !!! | TTCAATTGGAAATTTACTTT+TGG | - | chr4_1:78187317-78187336 | None:intergenic | 20.0% |
| !!! | TCTGAATTTCATTTTTCAAT+TGG | - | chr4_1:78187331-78187350 | None:intergenic | 20.0% |
| !! | AACAATAATAATGCACAAAT+AGG | + | chr4_1:78187524-78187543 | Msa0574580:CDS | 20.0% |
| !!! | AGAGAATGAACAATTTTAAA+AGG | + | chr4_1:78187920-78187939 | Msa0574580:three_prime_UTR | 20.0% |
| !!! | GAGAATGAACAATTTTAAAA+GGG | + | chr4_1:78187921-78187940 | Msa0574580:three_prime_UTR | 20.0% |
| !! | TTTCAAACAAATCTTACAAT+GGG | - | chr4_1:78188005-78188024 | None:intergenic | 20.0% |
| !! | ATTTCAAACAAATCTTACAA+TGG | - | chr4_1:78188006-78188025 | None:intergenic | 20.0% |
| !!! | TGTAAGATTTGTTTGAAATA+TGG | + | chr4_1:78188007-78188026 | Msa0574580:intron | 20.0% |
| !!! | GTAAGATTTGTTTGAAATAT+GGG | + | chr4_1:78188008-78188027 | Msa0574580:intron | 20.0% |
| !!! | GACGATTTGAGTTTTATATA+TGG | - | chr4_1:78184581-78184600 | None:intergenic | 25.0% |
| !!! | GTTATTGTTGGTTTAAGAAA+AGG | - | chr4_1:78184647-78184666 | None:intergenic | 25.0% |
| ! | TCCTAAATTCTTTACCAAAA+TGG | + | chr4_1:78184682-78184701 | Msa0574580:exon | 25.0% |
| !!! | TGAATATTGGGTTTGTTAAT+TGG | - | chr4_1:78184819-78184838 | None:intergenic | 25.0% |
| ! | TGAGAATTGAGAGTAATTAA+TGG | - | chr4_1:78184937-78184956 | None:intergenic | 25.0% |
| ! | TGTTGAGATAAATTTAGTCA+CGG | - | chr4_1:78185106-78185125 | None:intergenic | 25.0% |
| ! | AACATGAATTGCAAACTTAA+TGG | - | chr4_1:78185314-78185333 | None:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | - | chr4_1:78185460-78185479 | None:intergenic | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | - | chr4_1:78185461-78185480 | None:intergenic | 25.0% |
| ! | AGAATTGAATCTTACTATGA+GGG | + | chr4_1:78185589-78185608 | Msa0574580:CDS | 25.0% |
| ! | AATGAGAATCCAATATGTTA+GGG | + | chr4_1:78185819-78185838 | Msa0574580:intron | 25.0% |
| ! | TAAAACTAACCCTAACATAT+TGG | - | chr4_1:78185831-78185850 | None:intergenic | 25.0% |
| ! | AGGGTTTATATAGATTAAGA+TGG | - | chr4_1:78186508-78186527 | None:intergenic | 25.0% |
| ! | AATAATGAATAGTTAGGAGA+GGG | - | chr4_1:78186527-78186546 | None:intergenic | 25.0% |
| ! | AAATAATGAATAGTTAGGAG+AGG | - | chr4_1:78186528-78186547 | None:intergenic | 25.0% |
| ! | TATTGAATCTCTCAATATAC+AGG | + | chr4_1:78187389-78187408 | Msa0574580:intron | 25.0% |
| !! | TTTTGATCGTATGTTATAAC+TGG | - | chr4_1:78187455-78187474 | None:intergenic | 25.0% |
| !! | TACGATCAAAACAACTATTT+TGG | + | chr4_1:78187464-78187483 | Msa0574580:CDS | 25.0% |
| !! | GCCATTTTGGTAAAGAATTT+AGG | - | chr4_1:78184686-78184705 | None:intergenic | 30.0% |
| AAGACAAACCAAATGACAAA+CGG | + | chr4_1:78184741-78184760 | Msa0574580:CDS | 30.0% | |
| AAAACATACGAAGCAAAAGA+AGG | - | chr4_1:78184785-78184804 | None:intergenic | 30.0% | |
| !! | TGGGTTTGTTAATTGGTTTA+AGG | - | chr4_1:78184812-78184831 | None:intergenic | 30.0% |
| ! | GAGTAATTAATGGATAGTAG+AGG | - | chr4_1:78184927-78184946 | None:intergenic | 30.0% |
| AATTACTCTCAATTCTCATG+TGG | + | chr4_1:78184939-78184958 | Msa0574580:intron | 30.0% | |
| AGATAAATTTAGTCACGGTA+CGG | - | chr4_1:78185101-78185120 | None:intergenic | 30.0% | |
| AACATGTCTTTGATATGATC+AGG | + | chr4_1:78185196-78185215 | Msa0574580:intron | 30.0% | |
| ! | ATTTTGCTACCTGTGAATAT+TGG | - | chr4_1:78185356-78185375 | None:intergenic | 30.0% |
| ATAGAAATTGTAGTCCTTGA+TGG | + | chr4_1:78185467-78185486 | Msa0574580:CDS | 30.0% | |
| ! | GATGATTCATTTTCACTAGA+AGG | - | chr4_1:78185500-78185519 | None:intergenic | 30.0% |
| CTAGTGAAAATGAATCATCA+TGG | + | chr4_1:78185501-78185520 | Msa0574580:CDS | 30.0% | |
| GAGAATTGAATCTTACTATG+AGG | + | chr4_1:78185588-78185607 | Msa0574580:CDS | 30.0% | |
| ATCCTTAACAACAAAAGCTT+CGG | - | chr4_1:78185744-78185763 | None:intergenic | 30.0% | |
| CTAACATATTGGATTCTCAT+TGG | - | chr4_1:78185820-78185839 | None:intergenic | 30.0% | |
| CAATGAGAATCCAATATGTT+AGG | + | chr4_1:78185818-78185837 | Msa0574580:intron | 30.0% | |
| ! | AGCTAGTTTAATTAGCTTCA+AGG | - | chr4_1:78186061-78186080 | None:intergenic | 30.0% |
| TTAGAGAAGATTGGTAAAGA+CGG | + | chr4_1:78186383-78186402 | Msa0574580:CDS | 30.0% | |
| ! | ACAAAAAGTTGACTTCAGAA+GGG | + | chr4_1:78186414-78186433 | Msa0574580:CDS | 30.0% |
| TTCAAATGGATGGTAAATTG+AGG | - | chr4_1:78186970-78186989 | None:intergenic | 30.0% | |
| TTTGGCATATTGCATTCAAA+TGG | - | chr4_1:78186984-78187003 | None:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | + | chr4_1:78186984-78187003 | Msa0574580:CDS | 30.0% | |
| CCAATATGTTGTTAATGTCT+CGG | - | chr4_1:78187044-78187063 | None:intergenic | 30.0% | |
| CGAGACATTAACAACATATT+GGG | + | chr4_1:78187042-78187061 | Msa0574580:CDS | 30.0% | |
| !!! | CCAAAAGAGACTACATTTTT+TGG | - | chr4_1:78187768-78187787 | None:intergenic | 30.0% |
| ! | CCAAAAAATGTAGTCTCTTT+TGG | + | chr4_1:78187765-78187784 | Msa0574580:three_prime_UTR | 30.0% |
| !! | ACTAGGCTTAGTTATTTTCT+TGG | + | chr4_1:78187979-78187998 | Msa0574580:intron | 30.0% |
| ! | TTTTCTACAAAAGAGGAACA+AGG | - | chr4_1:78188034-78188053 | None:intergenic | 30.0% |
| TATGATAAACATAGCAACAC+TGG | - | chr4_1:78188084-78188103 | None:intergenic | 30.0% | |
| GCTTGCTTTGATGTTATTGT+TGG | - | chr4_1:78184659-78184678 | None:intergenic | 35.0% | |
| ACAATAACATCAAAGCAAGC+TGG | + | chr4_1:78184659-78184678 | Msa0574580:five_prime_UTR | 35.0% | |
| TTACCAAAATGGCTGCAAAA+CGG | + | chr4_1:78184693-78184712 | Msa0574580:exon | 35.0% | |
| GTTCTTATCCGTTTGTCATT+TGG | - | chr4_1:78184752-78184771 | None:intergenic | 35.0% | |
| ! | AACATGCAAAACCTTTTCTC+TGG | + | chr4_1:78184993-78185012 | Msa0574580:CDS | 35.0% |
| CTTACCACTCTTCTAAGTAA+AGG | - | chr4_1:78185026-78185045 | None:intergenic | 35.0% | |
| ATATGATCAGGTGAATGAAG+AGG | + | chr4_1:78185208-78185227 | Msa0574580:intron | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | - | chr4_1:78185284-78185303 | None:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | + | chr4_1:78185283-78185302 | Msa0574580:CDS | 35.0% | |
| CTTTCACTTCCAATATTCAC+AGG | + | chr4_1:78185344-78185363 | Msa0574580:CDS | 35.0% | |
| AGGTAGCAAAATACTAGACA+CGG | + | chr4_1:78185364-78185383 | Msa0574580:CDS | 35.0% | |
| ! | CAACAAGAATCACACTGATT+GGG | - | chr4_1:78185397-78185416 | None:intergenic | 35.0% |
| TCAACAAGAATCACACTGAT+TGG | - | chr4_1:78185398-78185417 | None:intergenic | 35.0% | |
| TAGAAGGAAAATCTCCATCA+AGG | - | chr4_1:78185484-78185503 | None:intergenic | 35.0% | |
| AGTATTGTGAAAGAGAGAAC+TGG | + | chr4_1:78185545-78185564 | Msa0574580:CDS | 35.0% | |
| GTATTGTGAAAGAGAGAACT+GGG | + | chr4_1:78185546-78185565 | Msa0574580:CDS | 35.0% | |
| TTCAATTCTCCTGTAAGCAA+TGG | - | chr4_1:78185578-78185597 | None:intergenic | 35.0% | |
| TTGAATCTTACTATGAGGGA+TGG | + | chr4_1:78185593-78185612 | Msa0574580:CDS | 35.0% | |
| ACGTATCCAGCTAGAATTAT+CGG | - | chr4_1:78185648-78185667 | None:intergenic | 35.0% | |
| GGTGATGCATTTAAATGAAG+AGG | - | chr4_1:78186040-78186059 | None:intergenic | 35.0% | |
| AGCTAATTAAACTAGCTACC+TGG | + | chr4_1:78186064-78186083 | Msa0574580:intron | 35.0% | |
| TAGTGTCATACTCATCAAGT+AGG | - | chr4_1:78186276-78186295 | None:intergenic | 35.0% | |
| CAAACTTCATCCTTTAGACT+TGG | - | chr4_1:78186359-78186378 | None:intergenic | 35.0% | |
| CAAGTCTAAAGGATGAAGTT+TGG | + | chr4_1:78186357-78186376 | Msa0574580:CDS | 35.0% | |
| ! | CACAAAAAGTTGACTTCAGA+AGG | + | chr4_1:78186413-78186432 | Msa0574580:CDS | 35.0% |
| !! | TGGTTTTGCTAGCAGATTTT+AGG | + | chr4_1:78186856-78186875 | Msa0574580:intron | 35.0% |
| TTGGTATGTCTGAGAAAATG+TGG | + | chr4_1:78186881-78186900 | Msa0574580:CDS | 35.0% | |
| TGGTATGTCTGAGAAAATGT+GGG | + | chr4_1:78186882-78186901 | Msa0574580:CDS | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | + | chr4_1:78186919-78186938 | Msa0574580:CDS | 35.0% | |
| GCATATTGCATTCAAATGGA+TGG | - | chr4_1:78186980-78186999 | None:intergenic | 35.0% | |
| !! | TGATGTTAGCTCTAACCATT+TGG | - | chr4_1:78187002-78187021 | None:intergenic | 35.0% |
| ATGGTTAGAGCTAACATCAA+TGG | + | chr4_1:78187003-78187022 | Msa0574580:CDS | 35.0% | |
| ATGTTGTTAATGTCTCGGAT+GGG | - | chr4_1:78187039-78187058 | None:intergenic | 35.0% | |
| TATGTTGTTAATGTCTCGGA+TGG | - | chr4_1:78187040-78187059 | None:intergenic | 35.0% | |
| CCGAGACATTAACAACATAT+TGG | + | chr4_1:78187041-78187060 | Msa0574580:CDS | 35.0% | |
| CATTAACAACATATTGGGCA+AGG | + | chr4_1:78187047-78187066 | Msa0574580:CDS | 35.0% | |
| TAGAAAAAGGTAGCAGTAGA+AGG | - | chr4_1:78187097-78187116 | None:intergenic | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | + | chr4_1:78187186-78187205 | Msa0574580:CDS | 35.0% | |
| ! | AACGTTGCTTTGTTAACTCA+AGG | + | chr4_1:78187235-78187254 | Msa0574580:CDS | 35.0% |
| TCAATATACAGGTGAAACCA+CGG | + | chr4_1:78187400-78187419 | Msa0574580:intron | 35.0% | |
| ! | GGTGCTTGATGATTATTGTT+TGG | - | chr4_1:78187434-78187453 | None:intergenic | 35.0% |
| GTGATATAACACCTCATTGA+TGG | + | chr4_1:78187633-78187652 | Msa0574580:CDS | 35.0% | |
| !!! | TAGTCTCTTTTGGCTTATGT+TGG | + | chr4_1:78187775-78187794 | Msa0574580:three_prime_UTR | 35.0% |
| !!! | AGTCTCTTTTGGCTTATGTT+GGG | + | chr4_1:78187776-78187795 | Msa0574580:three_prime_UTR | 35.0% |
| !! | TCTCTGTTTCTAGTTAGACT+AGG | + | chr4_1:78187962-78187981 | Msa0574580:three_prime_UTR | 35.0% |
| TGGGAAAAGAAGAAGCTTCT+AGG | - | chr4_1:78184561-78184580 | None:intergenic | 40.0% | |
| ! | AAACCGTTTTGCAGCCATTT+TGG | - | chr4_1:78184699-78184718 | None:intergenic | 40.0% |
| GGAACCTTTACTTAGAAGAG+TGG | + | chr4_1:78185019-78185038 | Msa0574580:CDS | 40.0% | |
| !! | GACTTTGTTATTGATCGTGG+TGG | - | chr4_1:78185260-78185279 | None:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | - | chr4_1:78185263-78185282 | None:intergenic | 40.0% |
| AGCAAAATACTAGACACGGA+TGG | + | chr4_1:78185368-78185387 | Msa0574580:CDS | 40.0% | |
| GGACTATTTGGTCATTGCTT+TGG | - | chr4_1:78185421-78185440 | None:intergenic | 40.0% | |
| CTAGACTTGTAGGGACTATT+TGG | - | chr4_1:78185433-78185452 | None:intergenic | 40.0% | |
| !! | TGAATCATCATGGACTAGTG+AGG | + | chr4_1:78185511-78185530 | Msa0574580:CDS | 40.0% |
| TGAAAGAGAGAACTGGGAAA+AGG | + | chr4_1:78185552-78185571 | Msa0574580:CDS | 40.0% | |
| GTGAACTCTATATCCCCAAT+TGG | - | chr4_1:78185626-78185645 | None:intergenic | 40.0% | |
| AGTTCACCGATAATTCTAGC+TGG | + | chr4_1:78185639-78185658 | Msa0574580:CDS | 40.0% | |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | + | chr4_1:78185684-78185703 | Msa0574580:CDS | 40.0% |
| ! | CAAAGTGTCCGAATTTGTGA+AGG | + | chr4_1:78185713-78185732 | Msa0574580:CDS | 40.0% |
| !!! | GACCGAAGCTTTTGTTGTTA+AGG | + | chr4_1:78185739-78185758 | Msa0574580:CDS | 40.0% |
| !! | TTTGTTGTTAAGGATCACCG+TGG | + | chr4_1:78185749-78185768 | Msa0574580:CDS | 40.0% |
| AAGAAAACTCACATTCGCCA+CGG | - | chr4_1:78185769-78185788 | None:intergenic | 40.0% | |
| GCTACCTGGTATATATGCTT+TGG | + | chr4_1:78186078-78186097 | Msa0574580:intron | 40.0% | |
| ACCTGGTATATATGCTTTGG+TGG | + | chr4_1:78186081-78186100 | Msa0574580:intron | 40.0% | |
| ACCACCAAAGCATATATACC+AGG | - | chr4_1:78186085-78186104 | None:intergenic | 40.0% | |
| ACATCATCCACCAAGTCTAA+AGG | + | chr4_1:78186346-78186365 | Msa0574580:CDS | 40.0% | |
| ACTTCATCCTTTAGACTTGG+TGG | - | chr4_1:78186356-78186375 | None:intergenic | 40.0% | |
| GTTTGGCGTTTAGAGAAGAT+TGG | + | chr4_1:78186374-78186393 | Msa0574580:CDS | 40.0% | |
| GCATGCAAAGACTTGTGTAA+TGG | + | chr4_1:78186918-78186937 | Msa0574580:CDS | 40.0% | |
| AACAAACTCTATGTCTACCG+TGG | + | chr4_1:78186943-78186962 | Msa0574580:CDS | 40.0% | |
| ! | TGAGAGAAGCATATGCTAGA+TGG | + | chr4_1:78187176-78187195 | Msa0574580:CDS | 40.0% |
| ATTGTTTGGAAATTGCTCCG+TGG | - | chr4_1:78187420-78187439 | None:intergenic | 40.0% | |
| ! | GTTGTTTGCTACATAGTTGC+CGG | - | chr4_1:78187507-78187526 | None:intergenic | 40.0% |
| TAAGGTAGGCCATTCATGAA+TGG | - | chr4_1:78187584-78187603 | None:intergenic | 40.0% | |
| TTCCCAGATTCACAATCAGA+CGG | + | chr4_1:78187608-78187627 | Msa0574580:CDS | 40.0% | |
| AATGCAAACCTGCCTTTACT+TGG | + | chr4_1:78188058-78188077 | Msa0574580:three_prime_UTR | 40.0% | |
| GCTATAGGTGGAGGAATGAA+AGG | - | chr4_1:78184612-78184631 | None:intergenic | 45.0% | |
| TTGCAGTGAGTAGCTATAGG+TGG | - | chr4_1:78184624-78184643 | None:intergenic | 45.0% | |
| AGGTTGCAGTGAGTAGCTAT+AGG | - | chr4_1:78184627-78184646 | None:intergenic | 45.0% | |
| ACTCTCAATTCTCATGTGGC+AGG | + | chr4_1:78184943-78184962 | Msa0574580:intron | 45.0% | |
| CTCTCAATTCTCATGTGGCA+GGG | + | chr4_1:78184944-78184963 | Msa0574580:intron | 45.0% | |
| GGTGATAGGAGAAGTGGTTA+TGG | + | chr4_1:78184965-78184984 | Msa0574580:CDS | 45.0% | |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | + | chr4_1:78184998-78185017 | Msa0574580:CDS | 45.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | - | chr4_1:78185007-78185026 | None:intergenic | 45.0% | |
| TTGGGTGTGCTAGACTTGTA+GGG | - | chr4_1:78185442-78185461 | None:intergenic | 45.0% | |
| ATTGGGTGTGCTAGACTTGT+AGG | - | chr4_1:78185443-78185462 | None:intergenic | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | + | chr4_1:78185608-78185627 | Msa0574580:CDS | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | + | chr4_1:78185609-78185628 | Msa0574580:CDS | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | + | chr4_1:78185610-78185629 | Msa0574580:CDS | 45.0% | |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | + | chr4_1:78185683-78185702 | Msa0574580:CDS | 45.0% |
| CGGTCATGCCTTCACAAATT+CGG | - | chr4_1:78185724-78185743 | None:intergenic | 45.0% | |
| TGTCTGTAGTTGACCCTCTT+AGG | + | chr4_1:78186465-78186484 | Msa0574580:CDS | 45.0% | |
| TCACCTTTCTGAGCCTAAGA+GGG | - | chr4_1:78186481-78186500 | None:intergenic | 45.0% | |
| ! | TGCTAGCAGATTTTAGGCGT+TGG | + | chr4_1:78186862-78186881 | Msa0574580:intron | 45.0% |
| GGATGGTAAATTGAGGACCA+CGG | - | chr4_1:78186963-78186982 | None:intergenic | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | - | chr4_1:78187034-78187053 | None:intergenic | 45.0% | |
| ! | TGCTAGATGGAATGAGTTGG+AGG | + | chr4_1:78187189-78187208 | Msa0574580:CDS | 45.0% |
| ! | GGTGATAACTCTCTAGAGAC+CGG | + | chr4_1:78187485-78187504 | Msa0574580:CDS | 45.0% |
| ! | CACAAATAGGTTGCATCGAC+TGG | + | chr4_1:78187537-78187556 | Msa0574580:CDS | 45.0% |
| GCCACATCACCATTCATGAA+TGG | + | chr4_1:78187572-78187591 | Msa0574580:CDS | 45.0% | |
| ! | GCCATTCATGAATGGTGATG+TGG | - | chr4_1:78187576-78187595 | None:intergenic | 45.0% |
| AATCTGGGAAGCTGTAAGGT+AGG | - | chr4_1:78187598-78187617 | None:intergenic | 45.0% | |
| TGTGAATCTGGGAAGCTGTA+AGG | - | chr4_1:78187602-78187621 | None:intergenic | 45.0% | |
| CACCGTCTGATTGTGAATCT+GGG | - | chr4_1:78187613-78187632 | None:intergenic | 45.0% | |
| ACCTCATTGATGGAGCTTCA+AGG | + | chr4_1:78187643-78187662 | Msa0574580:exon | 45.0% | |
| ACCTTGAAGCTCCATCAATG+AGG | - | chr4_1:78187647-78187666 | None:intergenic | 45.0% | |
| !!! | CTCACGCTCGACTTTTTCAA+CGG | - | chr4_1:78187877-78187896 | None:intergenic | 45.0% |
| TAGCAACACTGGCCAAGTAA+AGG | - | chr4_1:78188073-78188092 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTATAAAGAAA+AGG | + | chr4_1:78185165-78185184 | Msa0574580:intron | 5.0% |
| !!! | TTTTTGTTTAATTTATTTTA+AGG | + | chr4_1:78186179-78186198 | Msa0574580:intron | 5.0% |
| CAGTGAGTAGCTATAGGTGG+AGG | - | chr4_1:78184621-78184640 | None:intergenic | 50.0% | |
| TTCTCATGTGGCAGGGTGAT+AGG | + | chr4_1:78184951-78184970 | Msa0574580:intron | 50.0% | |
| GGGAAAAGGCCATTGCTTAC+AGG | + | chr4_1:78185566-78185585 | Msa0574580:CDS | 50.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | - | chr4_1:78185704-78185723 | None:intergenic | 50.0% |
| TGACCCTCTTAGGCTCAGAA+AGG | + | chr4_1:78186475-78186494 | Msa0574580:CDS | 50.0% | |
| GTCACCTTTCTGAGCCTAAG+AGG | - | chr4_1:78186482-78186501 | None:intergenic | 50.0% | |
| TGTCTCGGATGGGAATGGTT+TGG | - | chr4_1:78187029-78187048 | None:intergenic | 50.0% | |
| CCACCGTCTGATTGTGAATC+TGG | - | chr4_1:78187614-78187633 | None:intergenic | 50.0% | |
| CCAGATTCACAATCAGACGG+TGG | + | chr4_1:78187611-78187630 | Msa0574580:CDS | 50.0% | |
| AACACTGGCCAAGTAAAGGC+AGG | - | chr4_1:78188069-78188088 | None:intergenic | 50.0% | |
| TGGCAGGGTGATAGGAGAAG+TGG | + | chr4_1:78184959-78184978 | Msa0574580:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78184557 | 78188131 | 78184557 | ID=Msa0574580;Name=Msa0574580 |
| chr4_1 | mRNA | 78184557 | 78188131 | 78184557 | ID=Msa0574580-mRNA-1;Parent=Msa0574580;Name=Msa0574580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144|1|1|1|0.85|0.75|8|459|476 |
| chr4_1 | exon | 78184557 | 78184795 | 78184557 | ID=Msa0574580-mRNA-1:exon:27656;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78184965 | 78185040 | 78184965 | ID=Msa0574580-mRNA-1:exon:27657;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78185218 | 78185776 | 78185218 | ID=Msa0574580-mRNA-1:exon:27658;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78186336 | 78186496 | 78186336 | ID=Msa0574580-mRNA-1:exon:27659;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78186871 | 78187068 | 78186871 | ID=Msa0574580-mRNA-1:exon:27660;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78187157 | 78187256 | 78187157 | ID=Msa0574580-mRNA-1:exon:27661;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78187411 | 78187992 | 78187411 | ID=Msa0574580-mRNA-1:exon:27662;Parent=Msa0574580-mRNA-1 |
| chr4_1 | exon | 78188013 | 78188131 | 78188013 | ID=Msa0574580-mRNA-1:exon:27663;Parent=Msa0574580-mRNA-1 |
| chr4_1 | five_prime_UTR | 78184557 | 78184700 | 78184557 | ID=Msa0574580-mRNA-1:five_prime_utr;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78184701 | 78184795 | 78184701 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78184965 | 78185040 | 78184965 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78185218 | 78185776 | 78185218 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78186336 | 78186496 | 78186336 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78186871 | 78187068 | 78186871 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78187157 | 78187256 | 78187157 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | CDS | 78187411 | 78187652 | 78187411 | ID=Msa0574580-mRNA-1:cds;Parent=Msa0574580-mRNA-1 |
| chr4_1 | three_prime_UTR | 78187653 | 78187992 | 78187653 | ID=Msa0574580-mRNA-1:three_prime_utr;Parent=Msa0574580-mRNA-1 |
| chr4_1 | three_prime_UTR | 78188013 | 78188131 | 78188013 | ID=Msa0574580-mRNA-1:three_prime_utr;Parent=Msa0574580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
