Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708300 | XP_003630882.1 | 92.034 | 477 | 34 | 4 | 1 | 476 | 1 | 474 | 0.0 | 886 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708300 | sp|Q9C9T2|SARD1_ARATH | 50.939 | 426 | 189 | 11 | 1 | 420 | 1 | 412 | 4.01e-139 | 410 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708300 | G7L9S5 | 92.034 | 477 | 34 | 4 | 1 | 476 | 1 | 474 | 0.0 | 886 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001380 | Msa0708300 | 0.807665 | 4.523904e-50 | -8.615850e-47 |
Msa0013280 | Msa0708300 | 0.843970 | 1.009648e-58 | -8.615850e-47 |
Msa0091930 | Msa0708300 | 0.823042 | 1.713727e-53 | -8.615850e-47 |
Msa0106530 | Msa0708300 | 0.831389 | 1.716202e-55 | -8.615850e-47 |
Msa0662580 | Msa0708300 | 0.812824 | 3.489824e-51 | -8.615850e-47 |
Msa0708290 | Msa0708300 | 0.930340 | 1.889980e-93 | -8.615850e-47 |
Msa0708300 | Msa0745070 | 0.808486 | 3.024281e-50 | -8.615850e-47 |
Msa0708300 | Msa0780350 | 0.834503 | 2.886193e-56 | -8.615850e-47 |
Msa0708300 | Msa0780450 | 0.802627 | 5.128991e-49 | -8.615850e-47 |
Msa0708300 | Msa0834030 | 0.828115 | 1.075626e-54 | -8.615850e-47 |
Msa0708300 | Msa0936530 | 0.820577 | 6.371778e-53 | -8.615850e-47 |
Msa0708300 | Msa0936550 | 0.855165 | 7.575548e-62 | -8.615850e-47 |
Msa0708300 | Msa0952360 | 0.802920 | 4.461802e-49 | -8.615850e-47 |
Msa0708300 | Msa0973520 | 0.820464 | 6.765431e-53 | -8.615850e-47 |
Msa0708300 | Msa0982780 | 0.825427 | 4.714694e-54 | -8.615850e-47 |
Msa0708300 | Msa1017160 | 0.821321 | 4.296340e-53 | -8.615850e-47 |
Msa0708300 | Msa1236730 | 0.822262 | 2.602117e-53 | -8.615850e-47 |
Msa0708300 | Msa1269660 | 0.810571 | 1.078640e-50 | -8.615850e-47 |
Msa0708300 | Msa1317130 | 0.809178 | 2.151520e-50 | -8.615850e-47 |
Msa0708300 | Msa1344890 | 0.803820 | 2.904373e-49 | -8.615850e-47 |
Msa0708300 | Msa1353870 | 0.909827 | 3.699123e-82 | -8.615850e-47 |
Msa0708300 | Msa1353880 | 0.966949 | 1.311409e-126 | -8.615850e-47 |
Msa0708300 | Msa1398900 | 0.811029 | 8.589138e-51 | -8.615850e-47 |
Msa0708300 | Msa1405820 | 0.810372 | 1.191306e-50 | -8.615850e-47 |
Msa0708300 | Msa1408180 | 0.807197 | 5.684643e-50 | -8.615850e-47 |
Msa0708300 | Msa1448980 | 0.807125 | 5.888239e-50 | -8.615850e-47 |
Msa0131420 | Msa0708300 | 0.812171 | 4.848669e-51 | -8.615850e-47 |
Msa0133080 | Msa0708300 | 0.808374 | 3.195933e-50 | -8.615850e-47 |
Msa0235720 | Msa0708300 | 0.822994 | 1.758372e-53 | -8.615850e-47 |
Msa0377800 | Msa0708300 | 0.861878 | 7.526931e-64 | -8.615850e-47 |
Msa0426600 | Msa0708300 | 0.837621 | 4.664282e-57 | -8.615850e-47 |
Msa0466010 | Msa0708300 | 0.816697 | 4.837343e-52 | -8.615850e-47 |
Msa0472910 | Msa0708300 | 0.851382 | 9.202317e-61 | -8.615850e-47 |
Msa0314180 | Msa0708300 | 0.827494 | 1.517193e-54 | -8.615850e-47 |
Msa0517570 | Msa0708300 | 0.858172 | 9.885663e-63 | -8.615850e-47 |
Msa0524440 | Msa0708300 | 0.817444 | 3.286848e-52 | -8.615850e-47 |
Msa0574570 | Msa0708300 | 0.924874 | 3.927213e-90 | -8.615850e-47 |
Msa0574580 | Msa0708300 | 0.882874 | 7.223105e-71 | -8.615850e-47 |
Msa0580920 | Msa0708300 | 0.812109 | 5.002875e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708300 | MtrunA17_Chr8g0391221 | 92.034 | 477 | 34 | 4 | 1 | 476 | 1 | 474 | 0.0 | 886 |
Msa0708300 | MtrunA17_Chr8g0391211 | 87.002 | 477 | 56 | 6 | 1 | 475 | 72 | 544 | 0.0 | 835 |
Msa0708300 | MtrunA17_Chr6g0484111 | 63.430 | 484 | 162 | 13 | 1 | 475 | 1 | 478 | 0.0 | 603 |
Msa0708300 | MtrunA17_Chr6g0484131 | 63.202 | 481 | 160 | 11 | 1 | 475 | 1 | 470 | 0.0 | 593 |
Msa0708300 | MtrunA17_Chr6g0484121 | 62.994 | 481 | 161 | 11 | 1 | 475 | 1 | 470 | 0.0 | 588 |
Msa0708300 | MtrunA17_Chr2g0281171 | 44.976 | 418 | 208 | 8 | 4 | 416 | 16 | 416 | 2.82e-119 | 363 |
Msa0708300 | MtrunA17_Chr4g0048161 | 46.373 | 386 | 195 | 5 | 2 | 384 | 13 | 389 | 8.59e-116 | 353 |
Msa0708300 | MtrunA17_Chr4g0072691 | 49.020 | 357 | 176 | 4 | 31 | 384 | 4 | 357 | 1.66e-113 | 347 |
Msa0708300 | MtrunA17_Chr2g0304831 | 41.475 | 434 | 232 | 8 | 4 | 421 | 11 | 438 | 1.05e-108 | 334 |
Msa0708300 | MtrunA17_Chr4g0059411 | 49.235 | 327 | 152 | 7 | 1 | 326 | 1 | 314 | 1.94e-92 | 291 |
Msa0708300 | MtrunA17_Chr7g0271691 | 35.933 | 359 | 213 | 8 | 50 | 403 | 44 | 390 | 8.79e-56 | 194 |
Msa0708300 | MtrunA17_Chr7g0271671 | 35.465 | 344 | 197 | 10 | 50 | 381 | 60 | 390 | 7.80e-47 | 170 |
Msa0708300 | MtrunA17_Chr7g0271681 | 38.176 | 296 | 168 | 8 | 92 | 379 | 10 | 298 | 2.90e-46 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0708300 | AT1G73805.1 | 50.939 | 426 | 189 | 11 | 1 | 420 | 1 | 412 | 4.07e-140 | 410 |
Msa0708300 | AT5G57580.1 | 49.096 | 387 | 181 | 7 | 3 | 384 | 12 | 387 | 2.76e-117 | 358 |
Msa0708300 | AT4G25800.1 | 47.668 | 386 | 186 | 7 | 4 | 384 | 2 | 376 | 4.23e-114 | 348 |
Msa0708300 | AT4G25800.2 | 47.668 | 386 | 186 | 7 | 4 | 384 | 2 | 376 | 4.23e-114 | 348 |
Msa0708300 | AT2G18750.3 | 46.174 | 379 | 192 | 6 | 8 | 384 | 21 | 389 | 1.31e-111 | 343 |
Msa0708300 | AT2G18750.2 | 46.174 | 379 | 192 | 6 | 8 | 384 | 21 | 389 | 1.31e-111 | 343 |
Msa0708300 | AT2G18750.1 | 46.174 | 379 | 192 | 6 | 8 | 384 | 21 | 389 | 1.31e-111 | 343 |
Msa0708300 | AT2G24300.2 | 44.072 | 388 | 208 | 5 | 4 | 387 | 3 | 385 | 1.01e-103 | 322 |
Msa0708300 | AT2G24300.3 | 44.072 | 388 | 208 | 5 | 4 | 387 | 7 | 389 | 1.28e-103 | 322 |
Msa0708300 | AT4G31000.1 | 43.377 | 385 | 204 | 7 | 17 | 397 | 21 | 395 | 1.48e-99 | 310 |
Msa0708300 | AT5G62570.1 | 42.239 | 393 | 204 | 9 | 1 | 385 | 1 | 378 | 5.89e-94 | 294 |
Msa0708300 | AT5G62570.4 | 44.044 | 361 | 180 | 8 | 1 | 353 | 1 | 347 | 2.56e-93 | 288 |
Msa0708300 | AT5G62570.2 | 43.396 | 371 | 195 | 7 | 21 | 385 | 2 | 363 | 2.94e-93 | 291 |
Msa0708300 | AT2G24300.1 | 43.544 | 333 | 183 | 3 | 58 | 387 | 8 | 338 | 2.41e-88 | 281 |
Msa0708300 | AT5G62570.3 | 44.409 | 313 | 156 | 7 | 1 | 309 | 1 | 299 | 2.59e-74 | 236 |
Msa0708300 | AT4G31000.2 | 39.244 | 344 | 182 | 7 | 58 | 397 | 54 | 374 | 8.27e-74 | 242 |
Msa0708300 | AT5G26920.3 | 37.057 | 367 | 199 | 10 | 29 | 385 | 24 | 368 | 7.35e-71 | 231 |
Msa0708300 | AT5G26920.1 | 37.330 | 367 | 198 | 11 | 29 | 385 | 24 | 368 | 6.83e-70 | 233 |
Msa0708300 | AT5G26920.2 | 37.057 | 367 | 191 | 12 | 29 | 385 | 24 | 360 | 3.27e-67 | 225 |
Find 125 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGATCAAAACAACTATTT+TGG | 0.186437 | 4_4:+81815952 | Msa0708300:CDS |
TCCTAAATTCTTTACCAAAA+TGG | 0.210918 | 4_4:+81813201 | Msa0708300:exon |
AACATGAATTGCAAACTTAA+TGG | 0.225284 | 4_4:-81813828 | None:intergenic |
CTAGACTTGTAGGGACTATT+TGG | 0.240414 | 4_4:-81813947 | None:intergenic |
CCACCGTCTGATTGTGAATC+TGG | 0.259554 | 4_4:-81816099 | None:intergenic |
GGGAAAAGGCCATTGCTTAC+AGG | 0.316410 | 4_4:+81814083 | Msa0708300:CDS |
TGGGAAAAGAAGAAGCTTCT+AGG | 0.321871 | 4_4:-81813077 | None:intergenic |
ACTACAATTTCTATCTTGAT+TGG | 0.325646 | 4_4:-81813975 | None:intergenic |
GTTCTTATCCGTTTGTCATT+TGG | 0.329603 | 4_4:-81813268 | None:intergenic |
GGACTATTTGGTCATTGCTT+TGG | 0.356048 | 4_4:-81813935 | None:intergenic |
ATTGGGTGTGCTAGACTTGT+AGG | 0.364352 | 4_4:-81813957 | None:intergenic |
TGTCTGTAGTTGACCCTCTT+AGG | 0.365818 | 4_4:+81814982 | Msa0708300:CDS |
ATAGAAATTGTAGTCCTTGA+TGG | 0.367797 | 4_4:+81813984 | Msa0708300:CDS |
GCTTGCTTTGATGTTATTGT+TGG | 0.368262 | 4_4:-81813175 | None:intergenic |
AGGGATGGAATTGCACCAAT+TGG | 0.372898 | 4_4:+81814125 | Msa0708300:CDS |
CATGCAAAGACTTGTGTAAT+GGG | 0.381122 | 4_4:+81815409 | Msa0708300:CDS |
AACAACAATAATGCACAAAT+AGG | 0.385349 | 4_4:+81816012 | Msa0708300:CDS |
ACGTATCCAGCTAGAATTAT+CGG | 0.390207 | 4_4:-81814162 | None:intergenic |
CGGTCATGCCTTCACGAATT+CGG | 0.392944 | 4_4:-81814238 | None:intergenic |
TGATGTTAGCTCTAACCATT+TGG | 0.400701 | 4_4:-81815489 | None:intergenic |
TCAACAAGAATCACACTGAT+TGG | 0.402570 | 4_4:-81813912 | None:intergenic |
TTCTCATGTGGCAGGGTGAT+AGG | 0.406355 | 4_4:+81813469 | Msa0708300:intron |
CACAAATAGGTTGCATCGAC+TGG | 0.407081 | 4_4:+81816025 | Msa0708300:CDS |
CTACAATTTCTATCTTGATT+GGG | 0.407874 | 4_4:-81813974 | None:intergenic |
TTTGGCATATTGCATTCAAA+TGG | 0.408571 | 4_4:-81815471 | None:intergenic |
GTTGTTTGCTACATAGTTGC+CGG | 0.425532 | 4_4:-81815992 | None:intergenic |
GTGATATAACACCTCATTGA+TGG | 0.429717 | 4_4:+81816121 | Msa0708300:CDS |
GGGATGGAATTGCACCAATT+GGG | 0.430451 | 4_4:+81814126 | Msa0708300:CDS |
TGTATTGTGAAAGAGAGAAC+TGG | 0.432059 | 4_4:+81814062 | Msa0708300:CDS |
TGGGCTCTCACTTTAATCTC+TGG | 0.437542 | 4_4:+81816285 | Msa0708300:three_prime_UTR |
GGTGCTTGATGATTATTGTT+TGG | 0.438338 | 4_4:-81815919 | None:intergenic |
CAAGTCTAAAGGATGAAGTT+TGG | 0.439885 | 4_4:+81814874 | Msa0708300:CDS |
ACTTCATCCTTTAGACTTGG+TGG | 0.444061 | 4_4:-81814870 | None:intergenic |
GTTTGGCGTTTAGAGAAGAT+TGG | 0.451746 | 4_4:+81814891 | Msa0708300:CDS |
TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | 4_4:+81815666 | Msa0708300:CDS |
AGAGTCTTAGTGTCAAGTCT+TGG | 0.466766 | 4_4:+81816231 | Msa0708300:three_prime_UTR |
GCATGCAAAGACTTGTGTAA+TGG | 0.469359 | 4_4:+81815408 | Msa0708300:CDS |
GGTGATAGGAGAAGTGGTTA+TGG | 0.471004 | 4_4:+81813483 | Msa0708300:CDS |
TTTGAATGCAATATGCCAAA+TGG | 0.472527 | 4_4:+81815474 | Msa0708300:CDS |
GTTATTGTTGGTTTAAGAAA+AGG | 0.478558 | 4_4:-81813163 | None:intergenic |
GAGAATTGAATCTTACTATG+AGG | 0.479870 | 4_4:+81814105 | Msa0708300:CDS |
ATCCTTAACAACAAAAGCTT+CGG | 0.480776 | 4_4:-81814258 | None:intergenic |
CAACAAGAATCACACTGATT+GGG | 0.484318 | 4_4:-81813911 | None:intergenic |
ACCTCATTGATGGAGCTTCA+AGG | 0.484972 | 4_4:+81816131 | Msa0708300:exon |
GCCACATCACCATTCATGAA+TGG | 0.487146 | 4_4:+81816060 | Msa0708300:CDS |
AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | 4_4:-81813522 | None:intergenic |
CAAACTTCATCCTTTAGACT+TGG | 0.497266 | 4_4:-81814873 | None:intergenic |
CGAGACATTAACAACACATT+GGG | 0.498962 | 4_4:+81815532 | Msa0708300:CDS |
TGTCTCGGATGGGAATGGTT+TGG | 0.499358 | 4_4:-81815516 | None:intergenic |
GCATATTGCATTCAAATGGA+TGG | 0.501335 | 4_4:-81815467 | None:intergenic |
GGTGATAATTGTCTAGAGAC+CGG | 0.501799 | 4_4:+81815973 | Msa0708300:CDS |
ACATCATCCACCAAGTCTAA+AGG | 0.508840 | 4_4:+81814863 | Msa0708300:CDS |
CTTACCACTCTTCTAAGTAA+AGG | 0.510684 | 4_4:-81813541 | None:intergenic |
GTGAACTCAATATCCCCAAT+TGG | 0.516335 | 4_4:-81814140 | None:intergenic |
ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | 4_4:-81813798 | None:intergenic |
TGAAAGAGAGAACTGGGAAA+AGG | 0.520203 | 4_4:+81814069 | Msa0708300:CDS |
AGGTTGCAGTGAGTAGCTAT+AGG | 0.521995 | 4_4:-81813143 | None:intergenic |
CACCGTCTGATTGTGAATCT+GGG | 0.522998 | 4_4:-81816098 | None:intergenic |
CGGACACTTTGATTAGTCCC+AGG | 0.523841 | 4_4:-81814218 | None:intergenic |
GTTACCTTTCTGAGCCTAAG+AGG | 0.526278 | 4_4:-81814996 | None:intergenic |
AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | 4_4:+81815725 | Msa0708300:CDS |
ATGGTTAGAGCTAACATCAA+TGG | 0.535787 | 4_4:+81815493 | Msa0708300:CDS |
GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | 4_4:+81814200 | Msa0708300:CDS |
TTGGGTGTGCTAGACTTGTA+GGG | 0.539741 | 4_4:-81813956 | None:intergenic |
AACACTGGCCTAGTGAAGGC+AGG | 0.540311 | 4_4:-81816537 | None:intergenic |
TTGGTATGTCCGAGAAAATG+TGG | 0.540719 | 4_4:+81815371 | Msa0708300:CDS |
CTTTCACTTCCAATATTCAC+AGG | 0.543526 | 4_4:+81813861 | Msa0708300:CDS |
AGTTCACCGATAATTCTAGC+TGG | 0.544574 | 4_4:+81814156 | Msa0708300:CDS |
CCAATGTGTTGTTAATGTCT+CGG | 0.546259 | 4_4:-81815531 | None:intergenic |
AAGACAAACCAAATGACAAA+CGG | 0.546324 | 4_4:+81813260 | Msa0708300:CDS |
TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | 4_4:+81815679 | Msa0708300:CDS |
TAAGGTAGGCCATTCATGAA+TGG | 0.552824 | 4_4:-81816069 | None:intergenic |
GTTAATGTCTCGGATGGGAA+TGG | 0.555065 | 4_4:-81815521 | None:intergenic |
TCTCTGTTTCTAGTTAGACT+AGG | 0.558774 | 4_4:+81816452 | Msa0708300:three_prime_UTR |
TATGATAAACATAGCAACAC+TGG | 0.559758 | 4_4:-81816552 | None:intergenic |
TTCAAATGGATGGTAAATTG+AGG | 0.559963 | 4_4:-81815457 | None:intergenic |
TTGATATGATCAGGTGAATG+AGG | 0.563418 | 4_4:+81813722 | Msa0708300:intron |
AAAACATACGAAGCAAAAGA+AGG | 0.565396 | 4_4:-81813301 | None:intergenic |
AGAATTGAATCTTACTATGA+GGG | 0.565949 | 4_4:+81814106 | Msa0708300:CDS |
AATGCAAACCTGCCTTCACT+AGG | 0.566193 | 4_4:+81816529 | Msa0708300:three_prime_UTR |
TTACCAAAATGGCTGCAAAA+CGG | 0.566987 | 4_4:+81813212 | Msa0708300:exon |
TGTGAATCTGGGAAGCTGTA+AGG | 0.567774 | 4_4:-81816087 | None:intergenic |
TAGAAGGAAAATCTCCATCA+AGG | 0.570001 | 4_4:-81813998 | None:intergenic |
GCTATAGGTGGAGGAATGAA+AGG | 0.571331 | 4_4:-81813128 | None:intergenic |
TTGAATCTTACTATGAGGGA+TGG | 0.576141 | 4_4:+81814110 | Msa0708300:CDS |
GGATGGAATTGCACCAATTG+GGG | 0.580908 | 4_4:+81814127 | Msa0708300:CDS |
TTCAATTCTCCTGTAAGCAA+TGG | 0.582190 | 4_4:-81814092 | None:intergenic |
AACTGTTGTAATCCCTTCTG+AGG | 0.582778 | 4_4:-81814943 | None:intergenic |
TTACCTTTCTGAGCCTAAGA+GGG | 0.582827 | 4_4:-81814995 | None:intergenic |
ATTGTTTGGAAATTGCTCCA+TGG | 0.588651 | 4_4:-81815905 | None:intergenic |
TTCATTGAGACTTCAAGCAA+TGG | 0.589164 | 4_4:+81813800 | Msa0708300:CDS |
CCGAGACATTAACAACACAT+TGG | 0.589170 | 4_4:+81815531 | Msa0708300:CDS |
CTAGTGAAAATGAATCATCA+TGG | 0.589991 | 4_4:+81814018 | Msa0708300:CDS |
GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | 4_4:+81813537 | Msa0708300:CDS |
CAGTGAGTAGCTATAGGTGG+AGG | 0.596371 | 4_4:-81813137 | None:intergenic |
GGTGACTTTGTTATTGATCG+TGG | 0.600634 | 4_4:-81813777 | None:intergenic |
TGACCCTCTTAGGCTCAGAA+AGG | 0.602742 | 4_4:+81814992 | Msa0708300:CDS |
TGGCAGGGTGATAGGAGAAG+TGG | 0.605295 | 4_4:+81813477 | Msa0708300:intron |
TGTGTTGTTAATGTCTCGGA+TGG | 0.608686 | 4_4:-81815527 | None:intergenic |
AATCTGGGAAGCTGTAAGGT+AGG | 0.616693 | 4_4:-81816083 | None:intergenic |
ATATGCTAGATGGAATGAGT+TGG | 0.618437 | 4_4:+81815676 | Msa0708300:CDS |
GACTTTGTTATTGATCGTGG+TGG | 0.621283 | 4_4:-81813774 | None:intergenic |
ACAATAACATCAAAGCAAGC+TGG | 0.621523 | 4_4:+81813178 | Msa0708300:five_prime_UTR |
TTGCAGTGAGTAGCTATAGG+TGG | 0.624654 | 4_4:-81813140 | None:intergenic |
TTAGAGAAGATTGGTAAAGA+CGG | 0.625104 | 4_4:+81814900 | Msa0708300:CDS |
GTATTGTGAAAGAGAGAACT+GGG | 0.625839 | 4_4:+81814063 | Msa0708300:CDS |
TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | 4_4:+81814201 | Msa0708300:CDS |
CAAAGTGTCCGAATTCGTGA+AGG | 0.626320 | 4_4:+81814230 | Msa0708300:CDS |
TCACTATACAGGTGAAACCA+TGG | 0.626418 | 4_4:+81815888 | Msa0708300:intron |
TAGCAACACTGGCCTAGTGA+AGG | 0.627610 | 4_4:-81816541 | None:intergenic |
AGCAAAATACTAGACACGGA+TGG | 0.635352 | 4_4:+81813885 | Msa0708300:CDS |
TGAATCATCATGGACTAGTG+AGG | 0.636414 | 4_4:+81814028 | Msa0708300:CDS |
TTCCCAGATTCACAATCAGA+CGG | 0.636484 | 4_4:+81816096 | Msa0708300:CDS |
GCCATTCATGAATGGTGATG+TGG | 0.641806 | 4_4:-81816061 | None:intergenic |
CATTAACAACACATTGGGCA+AGG | 0.650846 | 4_4:+81815537 | Msa0708300:CDS |
ACCTTGAAGCTCCATCAATG+AGG | 0.663424 | 4_4:-81816132 | None:intergenic |
AGGTAGCAAAATACTAGACA+CGG | 0.663844 | 4_4:+81813881 | Msa0708300:CDS |
AAGAAAACTCACATTCGCCA+CGG | 0.670555 | 4_4:-81814283 | None:intergenic |
TGGTATGTCCGAGAAAATGT+GGG | 0.700296 | 4_4:+81815372 | Msa0708300:CDS |
ATATGATCAGGTGAATGAGG+AGG | 0.701419 | 4_4:+81813725 | Msa0708300:intron |
AACAAACTCTATGTCTACCG+CGG | 0.707473 | 4_4:+81815433 | Msa0708300:CDS |
GTGTTGTTAATGTCTCGGAT+GGG | 0.715548 | 4_4:-81815526 | None:intergenic |
CCAGATTCACAATCAGACGG+TGG | 0.723625 | 4_4:+81816099 | Msa0708300:CDS |
GGATGGTAAATTGAGGACCG+CGG | 0.726063 | 4_4:-81815450 | None:intergenic |
TTTGTTGTTAAGGATCACCG+TGG | 0.748264 | 4_4:+81814266 | Msa0708300:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATTTCATTTCAAAATTA+TGG | - | chr4_4:81813590-81813609 | None:intergenic | 10.0% |
!! | AAAATAATGAATATATAGTT+AGG | - | chr4_4:81815050-81815069 | None:intergenic | 10.0% |
!! | TATACATCATTTATAATTAT+TGG | - | chr4_4:81815273-81815292 | None:intergenic | 10.0% |
!! | TATAAATGATGTATATTTAT+AGG | + | chr4_4:81815278-81815297 | Msa0708300:intron | 10.0% |
!! | TATAAATTAGAATATCTTGA+AGG | - | chr4_4:81814427-81814446 | None:intergenic | 15.0% |
!!! | TTCTCTATGATTTTTTTTTT+TGG | + | chr4_4:81814505-81814524 | Msa0708300:intron | 15.0% |
!! | CATTATTAATGTTCAATAAA+TGG | + | chr4_4:81815097-81815116 | Msa0708300:intron | 15.0% |
!! | AAATAACATTCTCAATTATA+TGG | + | chr4_4:81815326-81815345 | Msa0708300:intron | 15.0% |
!!! | TACTTTTGGTTAAATAATTT+TGG | - | chr4_4:81815793-81815812 | None:intergenic | 15.0% |
!!! | TCTAAATTTCATTTTTCAAT+TGG | - | chr4_4:81815821-81815840 | None:intergenic | 15.0% |
!!! | TATATAAAAATTTTAGCAGT+TGG | + | chr4_4:81816189-81816208 | Msa0708300:three_prime_UTR | 15.0% |
!!! | TTATTTTCTACTTTGAAATA+TGG | + | chr4_4:81816480-81816499 | Msa0708300:three_prime_UTR | 15.0% |
!!! | TATTTTCTACTTTGAAATAT+GGG | + | chr4_4:81816481-81816500 | Msa0708300:three_prime_UTR | 15.0% |
!!! | ACGATTTGAGTTTTATATAT+GGG | - | chr4_4:81813099-81813118 | None:intergenic | 20.0% |
!! | TGATAGAATGAATGAATATT+GGG | - | chr4_4:81813350-81813369 | None:intergenic | 20.0% |
!! | ATGATAGAATGAATGAATAT+TGG | - | chr4_4:81813351-81813370 | None:intergenic | 20.0% |
!!! | TCATTTTTTTATACATAGCT+TGG | + | chr4_4:81813395-81813414 | Msa0708300:intron | 20.0% |
!! | AAAATTATGGTAAAGTTGAA+TGG | - | chr4_4:81813577-81813596 | None:intergenic | 20.0% |
!! | ACTGTTAATTAATGATTAGT+TGG | + | chr4_4:81814660-81814679 | Msa0708300:intron | 20.0% |
!!! | TTAATTTATTTTACGGTTGT+TGG | + | chr4_4:81814703-81814722 | Msa0708300:intron | 20.0% |
!!! | TAATTTATTTTACGGTTGTT+GGG | + | chr4_4:81814704-81814723 | Msa0708300:intron | 20.0% |
!! | TTGGGTTATAACTAAAATAA+AGG | + | chr4_4:81814722-81814741 | Msa0708300:intron | 20.0% |
!! | ACTAAAATAAAGGATCATAT+AGG | + | chr4_4:81814732-81814751 | Msa0708300:intron | 20.0% |
!! | CTAAAATAAAGGATCATATA+GGG | + | chr4_4:81814733-81814752 | Msa0708300:intron | 20.0% |
!! | CTATTACTATAAGACTAAAA+AGG | - | chr4_4:81814763-81814782 | None:intergenic | 20.0% |
!!! | GCACAATGTATTTTTATATA+CGG | + | chr4_4:81815196-81815215 | Msa0708300:intron | 20.0% |
!! | AAAAATCAATGCATAGAAAA+AGG | - | chr4_4:81815600-81815619 | None:intergenic | 20.0% |
!! | GCAAATTAAATGAACTATAT+AGG | - | chr4_4:81815625-81815644 | None:intergenic | 20.0% |
!!! | TTCAATTGGAAATTTACTTT+TGG | - | chr4_4:81815807-81815826 | None:intergenic | 20.0% |
!!! | TTTTGATCATATGTTATAAC+TGG | - | chr4_4:81815943-81815962 | None:intergenic | 20.0% |
!!! | TATGATCAAAACAACTATTT+TGG | + | chr4_4:81815952-81815971 | Msa0708300:CDS | 20.0% |
!!! | CAAAAGACATTACATTTTTT+GGG | - | chr4_4:81816257-81816276 | None:intergenic | 20.0% |
!!! | AGAGAATGAACAATTTTAAA+AGG | + | chr4_4:81816410-81816429 | Msa0708300:three_prime_UTR | 20.0% |
!!! | GAGAATGAACAATTTTAAAA+GGG | + | chr4_4:81816411-81816430 | Msa0708300:three_prime_UTR | 20.0% |
!!! | GACGATTTGAGTTTTATATA+TGG | - | chr4_4:81813100-81813119 | None:intergenic | 25.0% |
!!! | GTTATTGTTGGTTTAAGAAA+AGG | - | chr4_4:81813166-81813185 | None:intergenic | 25.0% |
! | TCCTAAATTCTTTACCAAAA+TGG | + | chr4_4:81813201-81813220 | Msa0708300:exon | 25.0% |
!!! | TGAATATTGGGTTTGTTAAT+TGG | - | chr4_4:81813338-81813357 | None:intergenic | 25.0% |
! | TGAGAATTGAGAGTAATTAA+TGG | - | chr4_4:81813455-81813474 | None:intergenic | 25.0% |
! | TGTTGAGATAAATTTAGTCA+CGG | - | chr4_4:81813624-81813643 | None:intergenic | 25.0% |
! | AACATGAATTGCAAACTTAA+TGG | - | chr4_4:81813831-81813850 | None:intergenic | 25.0% |
! | CTACAATTTCTATCTTGATT+GGG | - | chr4_4:81813977-81813996 | None:intergenic | 25.0% |
! | ACTACAATTTCTATCTTGAT+TGG | - | chr4_4:81813978-81813997 | None:intergenic | 25.0% |
! | AGAATTGAATCTTACTATGA+GGG | + | chr4_4:81814106-81814125 | Msa0708300:CDS | 25.0% |
! | TAATGAGAATCCAATATGTT+AGG | + | chr4_4:81814335-81814354 | Msa0708300:intron | 25.0% |
! | AATGAGAATCCAATATGTTA+GGG | + | chr4_4:81814336-81814355 | Msa0708300:intron | 25.0% |
! | TAAAACTAACCCTAACATAT+TGG | - | chr4_4:81814348-81814367 | None:intergenic | 25.0% |
! | AGGGTTTATATAGATTAAGA+TGG | - | chr4_4:81815025-81815044 | None:intergenic | 25.0% |
! | ATGAATATATAGTTAGGAGA+GGG | - | chr4_4:81815044-81815063 | None:intergenic | 25.0% |
! | AATGAATATATAGTTAGGAG+AGG | - | chr4_4:81815045-81815064 | None:intergenic | 25.0% |
! | TTTATTGAATCTCACTATAC+AGG | + | chr4_4:81815877-81815896 | Msa0708300:intron | 25.0% |
! | AACAACAATAATGCACAAAT+AGG | + | chr4_4:81816012-81816031 | Msa0708300:CDS | 25.0% |
!!! | CCAAAAGACATTACATTTTT+TGG | - | chr4_4:81816258-81816277 | None:intergenic | 25.0% |
!! | CCAAAAAATGTAATGTCTTT+TGG | + | chr4_4:81816255-81816274 | Msa0708300:three_prime_UTR | 25.0% |
!!! | GCATTTTTTTTCTACAAAAG+AGG | - | chr4_4:81816514-81816533 | None:intergenic | 25.0% |
!! | GCCATTTTGGTAAAGAATTT+AGG | - | chr4_4:81813205-81813224 | None:intergenic | 30.0% |
AAGACAAACCAAATGACAAA+CGG | + | chr4_4:81813260-81813279 | Msa0708300:CDS | 30.0% | |
AAAACATACGAAGCAAAAGA+AGG | - | chr4_4:81813304-81813323 | None:intergenic | 30.0% | |
!! | TGGGTTTGTTAATTGGTTTA+AGG | - | chr4_4:81813331-81813350 | None:intergenic | 30.0% |
! | GAGTAATTAATGGATAGTAG+AGG | - | chr4_4:81813445-81813464 | None:intergenic | 30.0% |
AATTACTCTCAATTCTCATG+TGG | + | chr4_4:81813457-81813476 | Msa0708300:intron | 30.0% | |
AGATAAATTTAGTCACGGTA+CGG | - | chr4_4:81813619-81813638 | None:intergenic | 30.0% | |
AACATGTCTTTGATATGATC+AGG | + | chr4_4:81813713-81813732 | Msa0708300:intron | 30.0% | |
! | ATTTTGCTACCTGTGAATAT+TGG | - | chr4_4:81813873-81813892 | None:intergenic | 30.0% |
ATAGAAATTGTAGTCCTTGA+TGG | + | chr4_4:81813984-81814003 | Msa0708300:CDS | 30.0% | |
! | GATGATTCATTTTCACTAGA+AGG | - | chr4_4:81814017-81814036 | None:intergenic | 30.0% |
CTAGTGAAAATGAATCATCA+TGG | + | chr4_4:81814018-81814037 | Msa0708300:CDS | 30.0% | |
GAGAATTGAATCTTACTATG+AGG | + | chr4_4:81814105-81814124 | Msa0708300:CDS | 30.0% | |
ATCCTTAACAACAAAAGCTT+CGG | - | chr4_4:81814261-81814280 | None:intergenic | 30.0% | |
TGTGATGCATTTAAATGAAG+AGG | - | chr4_4:81814557-81814576 | None:intergenic | 30.0% | |
TTAGAGAAGATTGGTAAAGA+CGG | + | chr4_4:81814900-81814919 | Msa0708300:CDS | 30.0% | |
TTCAAATGGATGGTAAATTG+AGG | - | chr4_4:81815460-81815479 | None:intergenic | 30.0% | |
TTTGGCATATTGCATTCAAA+TGG | - | chr4_4:81815474-81815493 | None:intergenic | 30.0% | |
TTTGAATGCAATATGCCAAA+TGG | + | chr4_4:81815474-81815493 | Msa0708300:CDS | 30.0% | |
TAGAAAAAGGTAGAAGTAGA+AGG | - | chr4_4:81815587-81815606 | None:intergenic | 30.0% | |
!!! | TAATGTCTTTTGGCTTATGT+TGG | + | chr4_4:81816265-81816284 | Msa0708300:three_prime_UTR | 30.0% |
!!! | AATGTCTTTTGGCTTATGTT+GGG | + | chr4_4:81816266-81816285 | Msa0708300:three_prime_UTR | 30.0% |
! | TTTTCTACAAAAGAGGAACA+AGG | - | chr4_4:81816507-81816526 | None:intergenic | 30.0% |
TATGATAAACATAGCAACAC+TGG | - | chr4_4:81816555-81816574 | None:intergenic | 30.0% | |
GCTTGCTTTGATGTTATTGT+TGG | - | chr4_4:81813178-81813197 | None:intergenic | 35.0% | |
ACAATAACATCAAAGCAAGC+TGG | + | chr4_4:81813178-81813197 | Msa0708300:five_prime_UTR | 35.0% | |
TTACCAAAATGGCTGCAAAA+CGG | + | chr4_4:81813212-81813231 | Msa0708300:exon | 35.0% | |
GTTCTTATCCGTTTGTCATT+TGG | - | chr4_4:81813271-81813290 | None:intergenic | 35.0% | |
! | AACATGCAAAACCTTTTCTC+TGG | + | chr4_4:81813511-81813530 | Msa0708300:CDS | 35.0% |
CTTACCACTCTTCTAAGTAA+AGG | - | chr4_4:81813544-81813563 | None:intergenic | 35.0% | |
TTGATATGATCAGGTGAATG+AGG | + | chr4_4:81813722-81813741 | Msa0708300:intron | 35.0% | |
ATTGCTTGAAGTCTCAATGA+AGG | - | chr4_4:81813801-81813820 | None:intergenic | 35.0% | |
TTCATTGAGACTTCAAGCAA+TGG | + | chr4_4:81813800-81813819 | Msa0708300:CDS | 35.0% | |
CTTTCACTTCCAATATTCAC+AGG | + | chr4_4:81813861-81813880 | Msa0708300:CDS | 35.0% | |
AGGTAGCAAAATACTAGACA+CGG | + | chr4_4:81813881-81813900 | Msa0708300:CDS | 35.0% | |
! | CAACAAGAATCACACTGATT+GGG | - | chr4_4:81813914-81813933 | None:intergenic | 35.0% |
TCAACAAGAATCACACTGAT+TGG | - | chr4_4:81813915-81813934 | None:intergenic | 35.0% | |
TAGAAGGAAAATCTCCATCA+AGG | - | chr4_4:81814001-81814020 | None:intergenic | 35.0% | |
TGTATTGTGAAAGAGAGAAC+TGG | + | chr4_4:81814062-81814081 | Msa0708300:CDS | 35.0% | |
GTATTGTGAAAGAGAGAACT+GGG | + | chr4_4:81814063-81814082 | Msa0708300:CDS | 35.0% | |
TTCAATTCTCCTGTAAGCAA+TGG | - | chr4_4:81814095-81814114 | None:intergenic | 35.0% | |
TTGAATCTTACTATGAGGGA+TGG | + | chr4_4:81814110-81814129 | Msa0708300:CDS | 35.0% | |
ACGTATCCAGCTAGAATTAT+CGG | - | chr4_4:81814165-81814184 | None:intergenic | 35.0% | |
AGCTAATTAAACTAGCTACC+TGG | + | chr4_4:81814581-81814600 | Msa0708300:intron | 35.0% | |
TAGTGTCATACTCATCAAGT+AGG | - | chr4_4:81814793-81814812 | None:intergenic | 35.0% | |
CAAACTTCATCCTTTAGACT+TGG | - | chr4_4:81814876-81814895 | None:intergenic | 35.0% | |
CAAGTCTAAAGGATGAAGTT+TGG | + | chr4_4:81814874-81814893 | Msa0708300:CDS | 35.0% | |
ACAAAAAGTTGACCTCAGAA+GGG | + | chr4_4:81814931-81814950 | Msa0708300:CDS | 35.0% | |
!! | TGGTTTTGCTAGCAGATTTT+AGG | + | chr4_4:81815346-81815365 | Msa0708300:intron | 35.0% |
CATGCAAAGACTTGTGTAAT+GGG | + | chr4_4:81815409-81815428 | Msa0708300:CDS | 35.0% | |
GCATATTGCATTCAAATGGA+TGG | - | chr4_4:81815470-81815489 | None:intergenic | 35.0% | |
!! | TGATGTTAGCTCTAACCATT+TGG | - | chr4_4:81815492-81815511 | None:intergenic | 35.0% |
ATGGTTAGAGCTAACATCAA+TGG | + | chr4_4:81815493-81815512 | Msa0708300:CDS | 35.0% | |
! | CCAATGTGTTGTTAATGTCT+CGG | - | chr4_4:81815534-81815553 | None:intergenic | 35.0% |
CGAGACATTAACAACACATT+GGG | + | chr4_4:81815532-81815551 | Msa0708300:CDS | 35.0% | |
ATATGCTAGATGGAATGAGT+TGG | + | chr4_4:81815676-81815695 | Msa0708300:CDS | 35.0% | |
! | AACGTTGCTTTGTTAACTCA+AGG | + | chr4_4:81815725-81815744 | Msa0708300:CDS | 35.0% |
ATTGTTTGGAAATTGCTCCA+TGG | - | chr4_4:81815908-81815927 | None:intergenic | 35.0% | |
! | GGTGCTTGATGATTATTGTT+TGG | - | chr4_4:81815922-81815941 | None:intergenic | 35.0% |
GTGATATAACACCTCATTGA+TGG | + | chr4_4:81816121-81816140 | Msa0708300:CDS | 35.0% | |
!! | TCTCTGTTTCTAGTTAGACT+AGG | + | chr4_4:81816452-81816471 | Msa0708300:three_prime_UTR | 35.0% |
TGGGAAAAGAAGAAGCTTCT+AGG | - | chr4_4:81813080-81813099 | None:intergenic | 40.0% | |
! | AAACCGTTTTGCAGCCATTT+TGG | - | chr4_4:81813218-81813237 | None:intergenic | 40.0% |
GGAACCTTTACTTAGAAGAG+TGG | + | chr4_4:81813537-81813556 | Msa0708300:CDS | 40.0% | |
ATATGATCAGGTGAATGAGG+AGG | + | chr4_4:81813725-81813744 | Msa0708300:intron | 40.0% | |
!! | GACTTTGTTATTGATCGTGG+TGG | - | chr4_4:81813777-81813796 | None:intergenic | 40.0% |
!! | GGTGACTTTGTTATTGATCG+TGG | - | chr4_4:81813780-81813799 | None:intergenic | 40.0% |
AGCAAAATACTAGACACGGA+TGG | + | chr4_4:81813885-81813904 | Msa0708300:CDS | 40.0% | |
GGACTATTTGGTCATTGCTT+TGG | - | chr4_4:81813938-81813957 | None:intergenic | 40.0% | |
CTAGACTTGTAGGGACTATT+TGG | - | chr4_4:81813950-81813969 | None:intergenic | 40.0% | |
!! | TGAATCATCATGGACTAGTG+AGG | + | chr4_4:81814028-81814047 | Msa0708300:CDS | 40.0% |
TGAAAGAGAGAACTGGGAAA+AGG | + | chr4_4:81814069-81814088 | Msa0708300:CDS | 40.0% | |
GTGAACTCAATATCCCCAAT+TGG | - | chr4_4:81814143-81814162 | None:intergenic | 40.0% | |
AGTTCACCGATAATTCTAGC+TGG | + | chr4_4:81814156-81814175 | Msa0708300:CDS | 40.0% | |
! | TTGCTGTTAGAATTGCTCCT+GGG | + | chr4_4:81814201-81814220 | Msa0708300:CDS | 40.0% |
!!! | GACCGAAGCTTTTGTTGTTA+AGG | + | chr4_4:81814256-81814275 | Msa0708300:CDS | 40.0% |
!! | TTTGTTGTTAAGGATCACCG+TGG | + | chr4_4:81814266-81814285 | Msa0708300:CDS | 40.0% |
AAGAAAACTCACATTCGCCA+CGG | - | chr4_4:81814286-81814305 | None:intergenic | 40.0% | |
GCTACCTGGTATATATGCTT+TGG | + | chr4_4:81814595-81814614 | Msa0708300:intron | 40.0% | |
ACCTGGTATATATGCTTTGG+TGG | + | chr4_4:81814598-81814617 | Msa0708300:intron | 40.0% | |
ACCACCAAAGCATATATACC+AGG | - | chr4_4:81814602-81814621 | None:intergenic | 40.0% | |
ACATCATCCACCAAGTCTAA+AGG | + | chr4_4:81814863-81814882 | Msa0708300:CDS | 40.0% | |
ACTTCATCCTTTAGACTTGG+TGG | - | chr4_4:81814873-81814892 | None:intergenic | 40.0% | |
GTTTGGCGTTTAGAGAAGAT+TGG | + | chr4_4:81814891-81814910 | Msa0708300:CDS | 40.0% | |
CACAAAAAGTTGACCTCAGA+AGG | + | chr4_4:81814930-81814949 | Msa0708300:CDS | 40.0% | |
AACTGTTGTAATCCCTTCTG+AGG | - | chr4_4:81814946-81814965 | None:intergenic | 40.0% | |
TTACCTTTCTGAGCCTAAGA+GGG | - | chr4_4:81814998-81815017 | None:intergenic | 40.0% | |
TTGGTATGTCCGAGAAAATG+TGG | + | chr4_4:81815371-81815390 | Msa0708300:CDS | 40.0% | |
TGGTATGTCCGAGAAAATGT+GGG | + | chr4_4:81815372-81815391 | Msa0708300:CDS | 40.0% | |
! | TGTCACATCCCACATTTTCT+CGG | - | chr4_4:81815383-81815402 | None:intergenic | 40.0% |
GCATGCAAAGACTTGTGTAA+TGG | + | chr4_4:81815408-81815427 | Msa0708300:CDS | 40.0% | |
AACAAACTCTATGTCTACCG+CGG | + | chr4_4:81815433-81815452 | Msa0708300:CDS | 40.0% | |
! | GTGTTGTTAATGTCTCGGAT+GGG | - | chr4_4:81815529-81815548 | None:intergenic | 40.0% |
! | TGTGTTGTTAATGTCTCGGA+TGG | - | chr4_4:81815530-81815549 | None:intergenic | 40.0% |
CCGAGACATTAACAACACAT+TGG | + | chr4_4:81815531-81815550 | Msa0708300:CDS | 40.0% | |
CATTAACAACACATTGGGCA+AGG | + | chr4_4:81815537-81815556 | Msa0708300:CDS | 40.0% | |
! | TGAGAGAAGCATATGCTAGA+TGG | + | chr4_4:81815666-81815685 | Msa0708300:CDS | 40.0% |
TCACTATACAGGTGAAACCA+TGG | + | chr4_4:81815888-81815907 | Msa0708300:intron | 40.0% | |
GGTGATAATTGTCTAGAGAC+CGG | + | chr4_4:81815973-81815992 | Msa0708300:CDS | 40.0% | |
! | GTTGTTTGCTACATAGTTGC+CGG | - | chr4_4:81815995-81816014 | None:intergenic | 40.0% |
TAAGGTAGGCCATTCATGAA+TGG | - | chr4_4:81816072-81816091 | None:intergenic | 40.0% | |
TTCCCAGATTCACAATCAGA+CGG | + | chr4_4:81816096-81816115 | Msa0708300:CDS | 40.0% | |
AGAGTCTTAGTGTCAAGTCT+TGG | + | chr4_4:81816231-81816250 | Msa0708300:three_prime_UTR | 40.0% | |
!!! | CTCTTGCTCGACTTTTTCAA+TGG | - | chr4_4:81816367-81816386 | None:intergenic | 40.0% |
GCTATAGGTGGAGGAATGAA+AGG | - | chr4_4:81813131-81813150 | None:intergenic | 45.0% | |
TTGCAGTGAGTAGCTATAGG+TGG | - | chr4_4:81813143-81813162 | None:intergenic | 45.0% | |
AGGTTGCAGTGAGTAGCTAT+AGG | - | chr4_4:81813146-81813165 | None:intergenic | 45.0% | |
ACTCTCAATTCTCATGTGGC+AGG | + | chr4_4:81813461-81813480 | Msa0708300:intron | 45.0% | |
CTCTCAATTCTCATGTGGCA+GGG | + | chr4_4:81813462-81813481 | Msa0708300:intron | 45.0% | |
GGTGATAGGAGAAGTGGTTA+TGG | + | chr4_4:81813483-81813502 | Msa0708300:CDS | 45.0% | |
! | GCAAAACCTTTTCTCTGGCT+TGG | + | chr4_4:81813516-81813535 | Msa0708300:CDS | 45.0% |
AAGGTTCCAAGCCAGAGAAA+AGG | - | chr4_4:81813525-81813544 | None:intergenic | 45.0% | |
TTGGGTGTGCTAGACTTGTA+GGG | - | chr4_4:81813959-81813978 | None:intergenic | 45.0% | |
ATTGGGTGTGCTAGACTTGT+AGG | - | chr4_4:81813960-81813979 | None:intergenic | 45.0% | |
AGGGATGGAATTGCACCAAT+TGG | + | chr4_4:81814125-81814144 | Msa0708300:CDS | 45.0% | |
GGGATGGAATTGCACCAATT+GGG | + | chr4_4:81814126-81814145 | Msa0708300:CDS | 45.0% | |
GGATGGAATTGCACCAATTG+GGG | + | chr4_4:81814127-81814146 | Msa0708300:CDS | 45.0% | |
! | GTTGCTGTTAGAATTGCTCC+TGG | + | chr4_4:81814200-81814219 | Msa0708300:CDS | 45.0% |
! | CAAAGTGTCCGAATTCGTGA+AGG | + | chr4_4:81814230-81814249 | Msa0708300:CDS | 45.0% |
TGTCTGTAGTTGACCCTCTT+AGG | + | chr4_4:81814982-81815001 | Msa0708300:CDS | 45.0% | |
GTTACCTTTCTGAGCCTAAG+AGG | - | chr4_4:81814999-81815018 | None:intergenic | 45.0% | |
! | TGCTAGCAGATTTTAGGCGT+TGG | + | chr4_4:81815352-81815371 | Msa0708300:intron | 45.0% |
GTTAATGTCTCGGATGGGAA+TGG | - | chr4_4:81815524-81815543 | None:intergenic | 45.0% | |
! | TGCTAGATGGAATGAGTTGG+AGG | + | chr4_4:81815679-81815698 | Msa0708300:CDS | 45.0% |
! | CACAAATAGGTTGCATCGAC+TGG | + | chr4_4:81816025-81816044 | Msa0708300:CDS | 45.0% |
GCCACATCACCATTCATGAA+TGG | + | chr4_4:81816060-81816079 | Msa0708300:CDS | 45.0% | |
! | GCCATTCATGAATGGTGATG+TGG | - | chr4_4:81816064-81816083 | None:intergenic | 45.0% |
AATCTGGGAAGCTGTAAGGT+AGG | - | chr4_4:81816086-81816105 | None:intergenic | 45.0% | |
TGTGAATCTGGGAAGCTGTA+AGG | - | chr4_4:81816090-81816109 | None:intergenic | 45.0% | |
CACCGTCTGATTGTGAATCT+GGG | - | chr4_4:81816101-81816120 | None:intergenic | 45.0% | |
ACCTCATTGATGGAGCTTCA+AGG | + | chr4_4:81816131-81816150 | Msa0708300:exon | 45.0% | |
ACCTTGAAGCTCCATCAATG+AGG | - | chr4_4:81816135-81816154 | None:intergenic | 45.0% | |
TGGGCTCTCACTTTAATCTC+TGG | + | chr4_4:81816285-81816304 | Msa0708300:three_prime_UTR | 45.0% | |
AATGCAAACCTGCCTTCACT+AGG | + | chr4_4:81816529-81816548 | Msa0708300:three_prime_UTR | 45.0% | |
!!! | TTTTTTTTTTTATAAAGAAA+AGG | + | chr4_4:81813682-81813701 | Msa0708300:intron | 5.0% |
!!! | TTTTTGTTTAATTTATTTTA+CGG | + | chr4_4:81814696-81814715 | Msa0708300:intron | 5.0% |
CAGTGAGTAGCTATAGGTGG+AGG | - | chr4_4:81813140-81813159 | None:intergenic | 50.0% | |
TTCTCATGTGGCAGGGTGAT+AGG | + | chr4_4:81813469-81813488 | Msa0708300:intron | 50.0% | |
GGGAAAAGGCCATTGCTTAC+AGG | + | chr4_4:81814083-81814102 | Msa0708300:CDS | 50.0% | |
! | CGGACACTTTGATTAGTCCC+AGG | - | chr4_4:81814221-81814240 | None:intergenic | 50.0% |
CGGTCATGCCTTCACGAATT+CGG | - | chr4_4:81814241-81814260 | None:intergenic | 50.0% | |
TGACCCTCTTAGGCTCAGAA+AGG | + | chr4_4:81814992-81815011 | Msa0708300:CDS | 50.0% | |
GGATGGTAAATTGAGGACCG+CGG | - | chr4_4:81815453-81815472 | None:intergenic | 50.0% | |
TGTCTCGGATGGGAATGGTT+TGG | - | chr4_4:81815519-81815538 | None:intergenic | 50.0% | |
CCACCGTCTGATTGTGAATC+TGG | - | chr4_4:81816102-81816121 | None:intergenic | 50.0% | |
CCAGATTCACAATCAGACGG+TGG | + | chr4_4:81816099-81816118 | Msa0708300:CDS | 50.0% | |
! | TAGCAACACTGGCCTAGTGA+AGG | - | chr4_4:81816544-81816563 | None:intergenic | 50.0% |
TGGCAGGGTGATAGGAGAAG+TGG | + | chr4_4:81813477-81813496 | Msa0708300:intron | 55.0% | |
! | AACACTGGCCTAGTGAAGGC+AGG | - | chr4_4:81816540-81816559 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 81813076 | 81816605 | 81813076 | ID=Msa0708300;Name=Msa0708300 |
chr4_4 | mRNA | 81813076 | 81816605 | 81813076 | ID=Msa0708300-mRNA-1;Parent=Msa0708300;Name=Msa0708300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=144|1|1|1|1|1|7|465|476 |
chr4_4 | exon | 81813076 | 81813314 | 81813076 | ID=Msa0708300-mRNA-1:exon:26879;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81813483 | 81813558 | 81813483 | ID=Msa0708300-mRNA-1:exon:26880;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81813735 | 81814293 | 81813735 | ID=Msa0708300-mRNA-1:exon:26881;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81814853 | 81815013 | 81814853 | ID=Msa0708300-mRNA-1:exon:26882;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81815361 | 81815558 | 81815361 | ID=Msa0708300-mRNA-1:exon:26883;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81815647 | 81815746 | 81815647 | ID=Msa0708300-mRNA-1:exon:26884;Parent=Msa0708300-mRNA-1 |
chr4_4 | exon | 81815899 | 81816605 | 81815899 | ID=Msa0708300-mRNA-1:exon:26885;Parent=Msa0708300-mRNA-1 |
chr4_4 | five_prime_UTR | 81813076 | 81813219 | 81813076 | ID=Msa0708300-mRNA-1:five_prime_utr;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81813220 | 81813314 | 81813220 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81813483 | 81813558 | 81813483 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81813735 | 81814293 | 81813735 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81814853 | 81815013 | 81814853 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81815361 | 81815558 | 81815361 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81815647 | 81815746 | 81815647 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | CDS | 81815899 | 81816140 | 81815899 | ID=Msa0708300-mRNA-1:cds;Parent=Msa0708300-mRNA-1 |
chr4_4 | three_prime_UTR | 81816141 | 81816605 | 81816141 | ID=Msa0708300-mRNA-1:three_prime_utr;Parent=Msa0708300-mRNA-1 |
Gene Sequence |
Protein sequence |