AlfalfaGEDB | Msa1353870

M. sativa cultivar zhongmu-4 / Msa1353870

KEGG: -
GO: GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07887.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353870	RHN43745.1	94.262	488	26	2	1	487	72	558	0.0	942

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353870	sp\|Q9C9T2\|SARD1_ARATH	48.832	428	195	11	1	420	1	412	4.06e-135	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353870	A0A396GY37	94.262	488	26	2	1	487	72	558	0.0	942

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013280	Msa1353870	0.809512	1.824472e-50	-8.615850e-47
Msa0086540	Msa1353870	0.801903	7.228897e-49	-8.615850e-47
Msa0091930	Msa1353870	0.835717	1.426153e-56	-8.615850e-47
Msa0106530	Msa1353870	0.809030	2.314267e-50	-8.615850e-47
Msa0235720	Msa1353870	0.819145	1.354074e-52	-8.615850e-47
Msa0314180	Msa1353870	0.826071	3.316969e-54	-8.615850e-47
Msa0377800	Msa1353870	0.818892	1.546051e-52	-8.615850e-47
Msa0466010	Msa1353870	0.816222	6.181860e-52	-8.615850e-47
Msa0472910	Msa1353870	0.812838	3.465611e-51	-8.615850e-47
Msa0490380	Msa1353870	0.855322	6.818611e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353870	MtrunA17_Chr8g0391211	94.262	488	26	2	1	487	72	558	0.0	942
Msa1353870	MtrunA17_Chr8g0391221	88.000	475	53	4	1	473	1	473	0.0	828
Msa1353870	MtrunA17_Chr6g0484111	61.680	488	172	13	1	478	1	483	0.0	574
Msa1353870	MtrunA17_Chr6g0484131	61.983	484	169	12	1	478	1	475	0.0	568
Msa1353870	MtrunA17_Chr6g0484121	61.570	484	171	12	1	478	1	475	0.0	561
Msa1353870	MtrunA17_Chr2g0281171	43.780	418	213	8	4	416	16	416	2.60e-112	345
Msa1353870	MtrunA17_Chr4g0048161	45.573	384	197	5	4	384	15	389	1.33e-110	340
Msa1353870	MtrunA17_Chr4g0072691	47.619	357	181	4	31	384	4	357	2.10e-108	334
Msa1353870	MtrunA17_Chr2g0304831	41.920	427	226	8	30	440	34	454	5.04e-105	325
Msa1353870	MtrunA17_Chr4g0059411	48.418	316	153	5	12	326	8	314	5.99e-91	287

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1353870	AT1G73805.1	48.832	428	195	11	1	420	1	412	4.12e-136	400
Msa1353870	AT5G57580.1	47.804	387	186	7	3	384	12	387	3.77e-111	343
Msa1353870	AT4G25800.1	47.340	376	186	5	13	384	9	376	5.45e-109	336
Msa1353870	AT4G25800.2	47.340	376	186	5	13	384	9	376	5.45e-109	336
Msa1353870	AT2G18750.3	45.658	357	190	4	29	384	36	389	4.33e-106	329
Msa1353870	AT2G18750.2	45.658	357	190	4	29	384	36	389	4.33e-106	329
Msa1353870	AT2G18750.1	45.658	357	190	4	29	384	36	389	4.33e-106	329
Msa1353870	AT2G24300.3	43.117	385	210	5	4	384	7	386	4.39e-96	303
Msa1353870	AT2G24300.2	43.117	385	210	5	4	384	3	382	4.75e-96	302
Msa1353870	AT4G31000.1	43.514	370	195	7	17	382	21	380	2.06e-94	297

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Find 127 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGCGAGTATATCT+TGG	0.434635	tig0014103:-55180	Msa1353870:three_prime_UTR
AACAAACGTTATGTCTACCG+TGG	0.654103	tig0014103:-56004	Msa1353870:CDS
AACAATAACAATGGACAAAT+AGG	0.309111	tig0014103:-55431	Msa1353870:CDS
AACATGAATTGAAAACTTAA+TGG	0.190103	tig0014103:+57480	None:intergenic
AACGTTGCTTTGTTAACTCA+AGG	0.528420	tig0014103:-55712	Msa1353870:intron
AAGGTTCCAAGCCAGAGAAA+AGG	0.490929	tig0014103:+57808	None:intergenic
AATAGTGATGTGGGAAATGG+TGG	0.626558	tig0014103:+55395	None:intergenic
AATATTGTGAAAGAGAGAAA+TGG	0.401290	tig0014103:-57246	Msa1353870:CDS
AATGTGATTCTTGTTGACAA+AGG	0.567650	tig0014103:-57390	Msa1353870:CDS
ACAATAACATCAGAGCAAGC+TGG	0.619100	tig0014103:-58192	Msa1353870:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATTGTTGGTGTAAGAAA+AGG	+	tig0014103:55044-55063	None:intergenic	30.0%
GAGTAATTAATGTACAGTAG+AGG	+	tig0014103:55363-55382	None:intergenic	30.0%
GGTAATAGGAGAAATTGTTA+TGG	-	tig0014103:55401-55420	Msa1353870:CDS	30.0%
ATATGATTAGGTGAATGAAG+AGG	-	tig0014103:55665-55684	Msa1353870:intron	30.0%
AATGTGATTCTTGTTGACAA+AGG	-	tig0014103:55858-55877	Msa1353870:intron	30.0%
CTAGTAAAAAGGAATCATCA+TGG	-	tig0014103:55958-55977	Msa1353870:CDS	30.0%
TTTAATTCTCCTGTAAGCAA+TGG	+	tig0014103:56035-56054	None:intergenic	30.0%
TTAAATCTTACTATGAGGGA+TGG	-	tig0014103:56050-56069	Msa1353870:CDS	30.0%
CATGCTTGCATATAAATTCA+AGG	+	tig0014103:56318-56337	None:intergenic	30.0%
GTGATGCATACATATGAAAA+GGG	+	tig0014103:56495-56514	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0014103	gene	54955	58315	54955	ID=Msa1353870;Name=Msa1353870
tig0014103	mRNA	54955	58315	54955	ID=Msa1353870-mRNA-1;Parent=Msa1353870;Name=Msa1353870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143\|1\|1\|1\|1\|1\|7\|331\|487
tig0014103	exon	54955	55560	54955	ID=Msa1353870-mRNA-1:exon:8869;Parent=Msa1353870-mRNA-1
tig0014103	exon	55713	55812	55713	ID=Msa1353870-mRNA-1:exon:8868;Parent=Msa1353870-mRNA-1
tig0014103	exon	55901	56098	55901	ID=Msa1353870-mRNA-1:exon:8867;Parent=Msa1353870-mRNA-1
tig0014103	exon	56219	56379	56219	ID=Msa1353870-mRNA-1:exon:8866;Parent=Msa1353870-mRNA-1
tig0014103	exon	57037	57595	57037	ID=Msa1353870-mRNA-1:exon:8865;Parent=Msa1353870-mRNA-1
tig0014103	exon	57794	57869	57794	ID=Msa1353870-mRNA-1:exon:8864;Parent=Msa1353870-mRNA-1
tig0014103	exon	58078	58315	58078	ID=Msa1353870-mRNA-1:exon:8863;Parent=Msa1353870-mRNA-1
tig0014103	five_prime_UTR	58173	58315	58173	ID=Msa1353870-mRNA-1:five_prime_utr;Parent=Msa1353870-mRNA-1
tig0014103	CDS	58078	58172	58078	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	57794	57869	57794	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	57037	57595	57037	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	56219	56379	56219	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	55901	56098	55901	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	55713	55812	55713	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	CDS	55286	55560	55286	ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1
tig0014103	three_prime_UTR	54955	55285	54955	ID=Msa1353870-mRNA-1:three_prime_utr;Parent=Msa1353870-mRNA-1

Gene Sequence

>Msa1353870

ATGGTTGCAAAACGTTTTCTTGATGATTTTAATGAAGACAAAGTCAAACCAAATGACAAACGCATGAGAACTACGACAACATCGTCTTTTGCTTCGGTAATAGGAGAAATTGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAATGAAGAGGTGGAAAGAGCAATGAGACAATGTTATCCACCACGATCAATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAAGAACCATTAAGTTTTCAATTCATGTTCAAAAATAAACTTTCACTTCCAATATTCACCGGTAGTAGAATACTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAGGCAATGACCAAATAGTCCCTACAAGTCTACCTCACCCAATCAAGATAGAAATTGTAGTTCTTGATGGAGATTTTCCTCCTAGTAAAAAGGAATCATCATGGACTAGTGAGGAATTCAATAGCAATATTGTGAAAGAGAGAAATGGGAAAAGACCATTGCTTACAGGAGAATTAAATCTTACTATGAGGGATGGAATTGCACCAATTGGGGATATTGAGTTCACCGATAATTCTAGCTGGATACGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCCGAATTCGTGAAGGCATGACCGAAGCTTTTGTTGTTAAAGATCATCGCGGAGAATTGTACAAGAAACACCACCCACCAAATCTAAAGGACGAAGTGTGGCGTCTAGAGAAAATTGGTAAAGATGGAGCTTTCCACAAAAAATTGACCTCAAAAGGGATTACCACAGTACAAGAGTTTCTCAAGTTGTCCGTAGTTGATCCTCATAGGCTCAGAAAGATTTTAGGCATTGGAATGTCAGAGAAAATGTGGGATGTGACAATTAAACATGCAAAGACTTGTGTAATGGGAAACAAACGTTATGTCTACCGTGGACCCCAATTTATCATCCATTTGAATGCAATATGCCAAATGGTTAGAGCTAACATCAATGGCCAAACCATTCCCATCCGAGACATTAACAACACATTGGGCAAGAGCTACATACAAAACTATGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGAAGTTTTGAATGACAACGTTGCTTTGTTAACTCAAGGTCGAACCATGGATCAATTTCAAAGCAATAATCATCAAGGATCACTTATAACATATGATCAAAACAACTATTTTGGTGATACTCTCGAGACTGGCAACTATGTATCAAACAATAACAATGGACAAATAGGTTGCATCGAGGGGCCACCATTTCCCACATCACTATTCATGAATGGGATCATACCTTATAGCTTCTTAGATTCACAATCAGACGGTGGTGATCTAACGCCTTCAAGTTCAGGACCAATCATTGATAGAGCTTCAAGGTGGCATTAG

Protein sequence

>Msa1353870

MVAKRFLDDFNEDKVKPNDKRMRTTTTSSFASVIGEIVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLQAMEEPLSFQFMFKNKLSLPIFTGSRILDMDGNSINVILVDKGNDQIVPTSLPHPIKIEIVVLDGDFPPSKKESSWTSEEFNSNIVKERNGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRIREGMTEAFVVKDHRGELYKKHHPPNLKDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPHRLRKILGIGMSEKMWDVTIKHAKTCVMGNKRYVYRGPQFIIHLNAICQMVRANINGQTIPIRDINNTLGKSYIQNYVREAYARWNELEEIDEVLNDNVALLTQGRTMDQFQSNNHQGSLITYDQNNYFGDTLETGNYVSNNNNGQIGCIEGPPFPTSLFMNGIIPYSFLDSQSDGGDLTPSSSGPIIDRASRWH*