Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353870 | RHN43745.1 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353870 | sp|Q9C9T2|SARD1_ARATH | 48.832 | 428 | 195 | 11 | 1 | 420 | 1 | 412 | 4.06e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353870 | A0A396GY37 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013280 | Msa1353870 | 0.809512 | 1.824472e-50 | -8.615850e-47 |
| Msa0086540 | Msa1353870 | 0.801903 | 7.228897e-49 | -8.615850e-47 |
| Msa0091930 | Msa1353870 | 0.835717 | 1.426153e-56 | -8.615850e-47 |
| Msa0106530 | Msa1353870 | 0.809030 | 2.314267e-50 | -8.615850e-47 |
| Msa1353870 | Msa1353880 | 0.920122 | 1.908013e-87 | -8.615850e-47 |
| Msa1353870 | Msa1398900 | 0.804985 | 1.660414e-49 | -8.615850e-47 |
| Msa0662580 | Msa1353870 | 0.815812 | 7.630906e-52 | -8.615850e-47 |
| Msa0708290 | Msa1353870 | 0.964356 | 3.180169e-123 | -8.615850e-47 |
| Msa0708300 | Msa1353870 | 0.909827 | 3.699123e-82 | -8.615850e-47 |
| Msa0780350 | Msa1353870 | 0.846121 | 2.649403e-59 | -8.615850e-47 |
| Msa0780450 | Msa1353870 | 0.800920 | 1.149015e-48 | -8.615850e-47 |
| Msa0834030 | Msa1353870 | 0.843476 | 1.369073e-58 | -8.615850e-47 |
| Msa0235720 | Msa1353870 | 0.819145 | 1.354074e-52 | -8.615850e-47 |
| Msa0377800 | Msa1353870 | 0.818892 | 1.546051e-52 | -8.615850e-47 |
| Msa0466010 | Msa1353870 | 0.816222 | 6.181860e-52 | -8.615850e-47 |
| Msa0472910 | Msa1353870 | 0.812838 | 3.465611e-51 | -8.615850e-47 |
| Msa0982780 | Msa1353870 | 0.812097 | 5.030877e-51 | -8.615850e-47 |
| Msa1017160 | Msa1353870 | 0.819190 | 1.322643e-52 | -8.615850e-47 |
| Msa0314180 | Msa1353870 | 0.826071 | 3.316969e-54 | -8.615850e-47 |
| Msa0490380 | Msa1353870 | 0.855322 | 6.818611e-62 | -8.615850e-47 |
| Msa0517570 | Msa1353870 | 0.811512 | 6.747474e-51 | -8.615850e-47 |
| Msa0574570 | Msa1353870 | 0.910719 | 1.367763e-82 | -8.615850e-47 |
| Msa0574580 | Msa1353870 | 0.839856 | 1.233727e-57 | -8.615850e-47 |
| Msa0936530 | Msa1353870 | 0.801934 | 7.121788e-49 | -8.615850e-47 |
| Msa0936550 | Msa1353870 | 0.822919 | 1.831003e-53 | -8.615850e-47 |
| Msa0973520 | Msa1353870 | 0.806495 | 8.001810e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353870 | MtrunA17_Chr8g0391211 | 94.262 | 488 | 26 | 2 | 1 | 487 | 72 | 558 | 0.0 | 942 |
| Msa1353870 | MtrunA17_Chr8g0391221 | 88.000 | 475 | 53 | 4 | 1 | 473 | 1 | 473 | 0.0 | 828 |
| Msa1353870 | MtrunA17_Chr6g0484111 | 61.680 | 488 | 172 | 13 | 1 | 478 | 1 | 483 | 0.0 | 574 |
| Msa1353870 | MtrunA17_Chr6g0484131 | 61.983 | 484 | 169 | 12 | 1 | 478 | 1 | 475 | 0.0 | 568 |
| Msa1353870 | MtrunA17_Chr6g0484121 | 61.570 | 484 | 171 | 12 | 1 | 478 | 1 | 475 | 0.0 | 561 |
| Msa1353870 | MtrunA17_Chr2g0281171 | 43.780 | 418 | 213 | 8 | 4 | 416 | 16 | 416 | 2.60e-112 | 345 |
| Msa1353870 | MtrunA17_Chr4g0048161 | 45.573 | 384 | 197 | 5 | 4 | 384 | 15 | 389 | 1.33e-110 | 340 |
| Msa1353870 | MtrunA17_Chr4g0072691 | 47.619 | 357 | 181 | 4 | 31 | 384 | 4 | 357 | 2.10e-108 | 334 |
| Msa1353870 | MtrunA17_Chr2g0304831 | 41.920 | 427 | 226 | 8 | 30 | 440 | 34 | 454 | 5.04e-105 | 325 |
| Msa1353870 | MtrunA17_Chr4g0059411 | 48.418 | 316 | 153 | 5 | 12 | 326 | 8 | 314 | 5.99e-91 | 287 |
| Msa1353870 | MtrunA17_Chr7g0271691 | 35.376 | 359 | 215 | 7 | 50 | 403 | 44 | 390 | 2.59e-56 | 196 |
| Msa1353870 | MtrunA17_Chr7g0271681 | 37.500 | 296 | 170 | 8 | 92 | 379 | 10 | 298 | 1.36e-44 | 163 |
| Msa1353870 | MtrunA17_Chr7g0271671 | 34.884 | 344 | 199 | 10 | 50 | 381 | 60 | 390 | 6.63e-44 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353870 | AT1G73805.1 | 48.832 | 428 | 195 | 11 | 1 | 420 | 1 | 412 | 4.12e-136 | 400 |
| Msa1353870 | AT5G57580.1 | 47.804 | 387 | 186 | 7 | 3 | 384 | 12 | 387 | 3.77e-111 | 343 |
| Msa1353870 | AT4G25800.1 | 47.340 | 376 | 186 | 5 | 13 | 384 | 9 | 376 | 5.45e-109 | 336 |
| Msa1353870 | AT4G25800.2 | 47.340 | 376 | 186 | 5 | 13 | 384 | 9 | 376 | 5.45e-109 | 336 |
| Msa1353870 | AT2G18750.3 | 45.658 | 357 | 190 | 4 | 29 | 384 | 36 | 389 | 4.33e-106 | 329 |
| Msa1353870 | AT2G18750.2 | 45.658 | 357 | 190 | 4 | 29 | 384 | 36 | 389 | 4.33e-106 | 329 |
| Msa1353870 | AT2G18750.1 | 45.658 | 357 | 190 | 4 | 29 | 384 | 36 | 389 | 4.33e-106 | 329 |
| Msa1353870 | AT2G24300.3 | 43.117 | 385 | 210 | 5 | 4 | 384 | 7 | 386 | 4.39e-96 | 303 |
| Msa1353870 | AT2G24300.2 | 43.117 | 385 | 210 | 5 | 4 | 384 | 3 | 382 | 4.75e-96 | 302 |
| Msa1353870 | AT4G31000.1 | 43.514 | 370 | 195 | 7 | 17 | 382 | 21 | 380 | 2.06e-94 | 297 |
| Msa1353870 | AT5G62570.1 | 39.387 | 424 | 227 | 10 | 19 | 436 | 21 | 420 | 2.22e-90 | 285 |
| Msa1353870 | AT5G62570.4 | 43.642 | 346 | 175 | 7 | 19 | 358 | 21 | 352 | 8.13e-90 | 279 |
| Msa1353870 | AT5G62570.2 | 39.100 | 422 | 233 | 9 | 21 | 436 | 2 | 405 | 1.21e-89 | 283 |
| Msa1353870 | AT2G24300.1 | 43.030 | 330 | 183 | 3 | 58 | 384 | 8 | 335 | 1.46e-84 | 271 |
| Msa1353870 | AT5G62570.3 | 44.027 | 293 | 148 | 6 | 19 | 309 | 21 | 299 | 1.83e-71 | 229 |
| Msa1353870 | AT4G31000.2 | 39.514 | 329 | 172 | 7 | 58 | 382 | 54 | 359 | 2.34e-70 | 233 |
| Msa1353870 | AT5G26920.3 | 35.695 | 367 | 204 | 10 | 29 | 385 | 24 | 368 | 1.39e-67 | 223 |
| Msa1353870 | AT5G26920.1 | 35.967 | 367 | 203 | 11 | 29 | 385 | 24 | 368 | 2.24e-66 | 224 |
| Msa1353870 | AT5G26920.2 | 35.422 | 367 | 197 | 11 | 29 | 385 | 24 | 360 | 2.01e-63 | 216 |
Find 127 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAAATGGATGATAAAT+TGG | 0.135753 | tig0014103:+55978 | None:intergenic |
| TATGATCAAAACAACTATTT+TGG | 0.186437 | tig0014103:-55485 | Msa1353870:CDS |
| AACATGAATTGAAAACTTAA+TGG | 0.190103 | tig0014103:+57480 | None:intergenic |
| TCCTAAATTCTTTACCAAAA+TGG | 0.190760 | tig0014103:-58169 | Msa1353870:exon |
| TATGGGCGTTGTTTCTCTTT+TGG | 0.207593 | tig0014103:-55107 | Msa1353870:three_prime_UTR |
| TATTTGACGCAGCCTTAAAA+TGG | 0.211163 | tig0014103:+55128 | None:intergenic |
| GTAGACTTGTAGGGACTATT+TGG | 0.242899 | tig0014103:+57361 | None:intergenic |
| CCCACTCTCCACACTTGGTT+CGG | 0.244500 | tig0014103:-55052 | Msa1353870:three_prime_UTR |
| AACAATAACAATGGACAAAT+AGG | 0.309111 | tig0014103:-55431 | Msa1353870:CDS |
| TTCTTATCTCATCAACATTT+CGG | 0.309722 | tig0014103:+54961 | None:intergenic |
| CACACTTCGTCCTTTAGATT+TGG | 0.320597 | tig0014103:+56337 | None:intergenic |
| ACTACAATTTCTATCTTGAT+TGG | 0.325646 | tig0014103:+57333 | None:intergenic |
| ATAGAAATTGTAGTTCTTGA+TGG | 0.327443 | tig0014103:-57324 | Msa1353870:CDS |
| TGAGAAAAGCAGAAGGTTCT+TGG | 0.334748 | tig0014103:+58292 | None:intergenic |
| GTTCTCATGCGTTTGTCATT+TGG | 0.344575 | tig0014103:+58102 | None:intergenic |
| ATTCTACTACCGGTGAATAT+TGG | 0.346627 | tig0014103:+57438 | None:intergenic |
| ATTCAAATGGATGATAAATT+GGG | 0.356032 | tig0014103:+55979 | None:intergenic |
| CATGCAAAGACTTGTGTAAT+GGG | 0.357437 | tig0014103:-56028 | Msa1353870:CDS |
| GGGAAAAGACCATTGCTTAC+AGG | 0.362337 | tig0014103:-57225 | Msa1353870:CDS |
| CCACTCTCCACACTTGGTTC+GGG | 0.365181 | tig0014103:-55051 | Msa1353870:three_prime_UTR |
| TGTGAATCTAAGAAGCTATA+AGG | 0.365716 | tig0014103:+55356 | None:intergenic |
| TTCTCATGTGACAGGGTAAT+AGG | 0.366638 | tig0014103:-57861 | Msa1353870:intron |
| GATCTAACGCCTTCAAGTTC+AGG | 0.368265 | tig0014103:-55320 | Msa1353870:CDS |
| AGGGATGGAATTGCACCAAT+TGG | 0.372898 | tig0014103:-57183 | Msa1353870:CDS |
| GCTTGCTCTGATGTTATTGT+TGG | 0.374740 | tig0014103:+58195 | None:intergenic |
| ATTGGGTGAGGTAGACTTGT+AGG | 0.383658 | tig0014103:+57351 | None:intergenic |
| ACGTATCCAGCTAGAATTAT+CGG | 0.390207 | tig0014103:+57146 | None:intergenic |
| CGGTCATGCCTTCACGAATT+CGG | 0.392944 | tig0014103:+57070 | None:intergenic |
| TGATGTTAGCTCTAACCATT+TGG | 0.400701 | tig0014103:+55948 | None:intergenic |
| AATATTGTGAAAGAGAGAAA+TGG | 0.401290 | tig0014103:-57246 | Msa1353870:CDS |
| CTACAATTTCTATCTTGATT+GGG | 0.407874 | tig0014103:+57334 | None:intergenic |
| TTTGGCATATTGCATTCAAA+TGG | 0.408571 | tig0014103:+55966 | None:intergenic |
| CCCACATCACTATTCATGAA+TGG | 0.421363 | tig0014103:-55386 | Msa1353870:CDS |
| TTTAAGGCTGCGTCAAATAT+GGG | 0.423655 | tig0014103:-55124 | Msa1353870:three_prime_UTR |
| ATCTTTAACAACAAAAGCTT+CGG | 0.424400 | tig0014103:+57050 | None:intergenic |
| GGGATGGAATTGCACCAATT+GGG | 0.430451 | tig0014103:-57182 | Msa1353870:CDS |
| AAAATATAGCGAGTATATCT+TGG | 0.434635 | tig0014103:-55180 | Msa1353870:three_prime_UTR |
| GTGTGGCGTCTAGAGAAAAT+TGG | 0.434971 | tig0014103:-56319 | Msa1353870:CDS |
| TTCGGATTATATAATTCAAA+AGG | 0.441860 | tig0014103:+54979 | None:intergenic |
| GAGAATTAAATCTTACTATG+AGG | 0.442875 | tig0014103:-57203 | Msa1353870:CDS |
| CCACATCACTATTCATGAAT+GGG | 0.446633 | tig0014103:-55385 | Msa1353870:CDS |
| TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | tig0014103:-55771 | Msa1353870:CDS |
| ATATTGTGAAAGAGAGAAAT+GGG | 0.455511 | tig0014103:-57245 | Msa1353870:CDS |
| ACATGCAAAGACTTGTGTAA+TGG | 0.464107 | tig0014103:-56029 | Msa1353870:CDS |
| CTTGAAGCTCTATCAATGAT+TGG | 0.465914 | tig0014103:+55296 | None:intergenic |
| CTAGAGAAAATTGGTAAAGA+TGG | 0.471632 | tig0014103:-56310 | Msa1353870:CDS |
| TTTGAATGCAATATGCCAAA+TGG | 0.472527 | tig0014103:-55963 | Msa1353870:CDS |
| CTTACCACTCTTCTAAGTAA+AGG | 0.474223 | tig0014103:+57789 | None:intergenic |
| ACTTCGTCCTTTAGATTTGG+TGG | 0.475388 | tig0014103:+56340 | None:intergenic |
| ATTTGACGCAGCCTTAAAAT+GGG | 0.485419 | tig0014103:+55129 | None:intergenic |
| AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | tig0014103:+57808 | None:intergenic |
| GTTATTGTTGGTGTAAGAAA+AGG | 0.496444 | tig0014103:+58207 | None:intergenic |
| CGAGACATTAACAACACATT+GGG | 0.498962 | tig0014103:-55905 | Msa1353870:CDS |
| TGTCTCGGATGGGAATGGTT+TGG | 0.499358 | tig0014103:+55921 | None:intergenic |
| TGTCCGTAGTTGATCCTCAT+AGG | 0.506873 | tig0014103:-56228 | Msa1353870:CDS |
| GGTAATAGGAGAAATTGTTA+TGG | 0.512172 | tig0014103:-57847 | Msa1353870:CDS |
| ATGATTGGTCCTGAACTTGA+AGG | 0.512823 | tig0014103:+55311 | None:intergenic |
| GTGAACTCAATATCCCCAAT+TGG | 0.516335 | tig0014103:+57168 | None:intergenic |
| ATGAATAGTGATGTGGGAAA+TGG | 0.517878 | tig0014103:+55392 | None:intergenic |
| ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | tig0014103:+57510 | None:intergenic |
| CGGACACTTTGATTAGTCCC+AGG | 0.523841 | tig0014103:+57090 | None:intergenic |
| ATTTCTATCTTGATTGGGTG+AGG | 0.527373 | tig0014103:+57339 | None:intergenic |
| AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | tig0014103:-55712 | Msa1353870:intron |
| ATGGTTAGAGCTAACATCAA+TGG | 0.535787 | tig0014103:-55944 | Msa1353870:CDS |
| GGACAAATAGGTTGCATCGA+GGG | 0.538004 | tig0014103:-55419 | Msa1353870:CDS |
| TTTCAAAGCAATAATCATCA+AGG | 0.539152 | tig0014103:-55521 | Msa1353870:CDS |
| GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | tig0014103:-57108 | Msa1353870:CDS |
| TTTGGTGATACTCTCGAGAC+TGG | 0.541346 | tig0014103:-55467 | Msa1353870:CDS |
| TTAAATCTTACTATGAGGGA+TGG | 0.541822 | tig0014103:-57198 | Msa1353870:CDS |
| CATGTCTAGTATTCTACTAC+CGG | 0.542523 | tig0014103:+57428 | None:intergenic |
| AGTTCACCGATAATTCTAGC+TGG | 0.544574 | tig0014103:-57152 | Msa1353870:CDS |
| CTTTCACTTCCAATATTCAC+CGG | 0.544704 | tig0014103:-57447 | Msa1353870:CDS |
| CCAATGTGTTGTTAATGTCT+CGG | 0.546259 | tig0014103:+55906 | None:intergenic |
| TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | tig0014103:-55758 | Msa1353870:CDS |
| CTTCGTCCTTTAGATTTGGT+GGG | 0.547859 | tig0014103:+56341 | None:intergenic |
| TTGGAATGTCAGAGAAAATG+TGG | 0.547888 | tig0014103:-56066 | Msa1353870:CDS |
| TTTAATTCTCCTGTAAGCAA+TGG | 0.551769 | tig0014103:+57216 | None:intergenic |
| CGTCCTTTAGATTTGGTGGG+TGG | 0.553800 | tig0014103:+56344 | None:intergenic |
| GTTAATGTCTCGGATGGGAA+TGG | 0.555065 | tig0014103:+55916 | None:intergenic |
| ACACCACCCACCAAATCTAA+AGG | 0.556569 | tig0014103:-56347 | Msa1353870:CDS |
| TTGGGTGAGGTAGACTTGTA+GGG | 0.558041 | tig0014103:+57352 | None:intergenic |
| AGAATTAAATCTTACTATGA+GGG | 0.564326 | tig0014103:-57202 | Msa1353870:CDS |
| ATTGCTTTGAAATTGATCCA+TGG | 0.565221 | tig0014103:+55532 | None:intergenic |
| AATGTGATTCTTGTTGACAA+AGG | 0.567650 | tig0014103:-57390 | Msa1353870:CDS |
| TTCATTGAGACTTCAAGCAA+TGG | 0.568410 | tig0014103:-57508 | Msa1353870:CDS |
| CAATCATTGATAGAGCTTCA+AGG | 0.569919 | tig0014103:-55295 | Msa1353870:CDS |
| TTCATAACCCGAACCAAGTG+TGG | 0.570016 | tig0014103:+55044 | None:intergenic |
| CGGTAGTAGAATACTAGACA+TGG | 0.574833 | tig0014103:-57427 | Msa1353870:CDS |
| GGATGGAATTGCACCAATTG+GGG | 0.580908 | tig0014103:-57181 | Msa1353870:CDS |
| TGTACCTTTCTGAGCCTATG+AGG | 0.581097 | tig0014103:+56214 | None:intergenic |
| GGATGATAAATTGGGGTCCA+CGG | 0.583121 | tig0014103:+55987 | None:intergenic |
| TATGTATCAAACAATAACAA+TGG | 0.588692 | tig0014103:-55440 | Msa1353870:CDS |
| CCGAGACATTAACAACACAT+TGG | 0.589170 | tig0014103:-55906 | Msa1353870:CDS |
| GACAAATAGGTTGCATCGAG+GGG | 0.589199 | tig0014103:-55418 | Msa1353870:CDS |
| CCGAACCAAGTGTGGAGAGT+GGG | 0.590097 | tig0014103:+55052 | None:intergenic |
| CCATTCATGAATAGTGATGT+GGG | 0.592181 | tig0014103:+55386 | None:intergenic |
| GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | tig0014103:-57793 | Msa1353870:intron |
| TTCTTAGATTCACAATCAGA+CGG | 0.596172 | tig0014103:-55347 | Msa1353870:CDS |
| GGTGACTTTGTTATTGATCG+TGG | 0.600634 | tig0014103:+57531 | None:intergenic |
| CAAATCTAAAGGACGAAGTG+TGG | 0.604899 | tig0014103:-56336 | Msa1353870:CDS |
| TGATCCTCATAGGCTCAGAA+AGG | 0.607583 | tig0014103:-56218 | Msa1353870:intron |
| TGTGTTGTTAATGTCTCGGA+TGG | 0.608686 | tig0014103:+55910 | None:intergenic |
| CCCATTCATGAATAGTGATG+TGG | 0.612706 | tig0014103:+55385 | None:intergenic |
| CTTGAGAAACTCTTGTACTG+TGG | 0.617200 | tig0014103:+56252 | None:intergenic |
| ATATGCTAGATGGAATGAGT+TGG | 0.618437 | tig0014103:-55761 | Msa1353870:CDS |
| ACAATAACATCAGAGCAAGC+TGG | 0.619100 | tig0014103:-58192 | Msa1353870:five_prime_UTR |
| GACTTTGTTATTGATCGTGG+TGG | 0.621283 | tig0014103:+57534 | None:intergenic |
| AGTAGAATACTAGACATGGA+TGG | 0.625124 | tig0014103:-57423 | Msa1353870:CDS |
| TTCAAATGGATGATAAATTG+GGG | 0.625219 | tig0014103:+55980 | None:intergenic |
| TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | tig0014103:-57107 | Msa1353870:CDS |
| TGATTAGGTGAATGAAGAGG+TGG | 0.626231 | tig0014103:-57580 | Msa1353870:intron |
| CAAAGTGTCCGAATTCGTGA+AGG | 0.626320 | tig0014103:-57078 | Msa1353870:CDS |
| AATAGTGATGTGGGAAATGG+TGG | 0.626558 | tig0014103:+55395 | None:intergenic |
| CCCGAACCAAGTGTGGAGAG+TGG | 0.638616 | tig0014103:+55051 | None:intergenic |
| GGAATCATCATGGACTAGTG+AGG | 0.638853 | tig0014103:-57280 | Msa1353870:CDS |
| CATTAACAACACATTGGGCA+AGG | 0.650846 | tig0014103:-55900 | Msa1353870:intron |
| TCACTCTACAGGTCGAACCA+TGG | 0.653009 | tig0014103:-55549 | Msa1353870:intron |
| AACAAACGTTATGTCTACCG+TGG | 0.654103 | tig0014103:-56004 | Msa1353870:CDS |
| GAGCCTATGAGGATCAACTA+CGG | 0.659771 | tig0014103:+56225 | None:intergenic |
| ATATGATTAGGTGAATGAAG+AGG | 0.685589 | tig0014103:-57583 | Msa1353870:intron |
| TGTAAGAAAAGGTTGCAGTG+AGG | 0.686980 | tig0014103:+58218 | None:intergenic |
| TGGACAAATAGGTTGCATCG+AGG | 0.690086 | tig0014103:-55420 | Msa1353870:CDS |
| TTAGATTCACAATCAGACGG+TGG | 0.697439 | tig0014103:-55344 | Msa1353870:CDS |
| TGGAATGTCAGAGAAAATGT+GGG | 0.706104 | tig0014103:-56065 | Msa1353870:CDS |
| GTGTTGTTAATGTCTCGGAT+GGG | 0.715548 | tig0014103:+55911 | None:intergenic |
| TTTGTTGTTAAAGATCATCG+CGG | 0.765249 | tig0014103:-57042 | Msa1353870:CDS |
| TCATTGATAGAGCTTCAAGG+TGG | 0.769312 | tig0014103:-55292 | Msa1353870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATAAAATGAATATT+GGG | + | tig0014103:55228-55247 | None:intergenic | 10.0% |
| !! | TTCTATTTATATATATGATT+AGG | - | tig0014103:55653-55672 | Msa1353870:intron | 10.0% |
| !!! | TTTTTGTTTAGTTTATTTTA+AGG | - | tig0014103:56637-56656 | Msa1353870:intron | 10.0% |
| !! | AAAATAAGTTAATGTTTATA+TGG | - | tig0014103:57137-57156 | Msa1353870:CDS | 10.0% |
| !! | GAACATAATAAAATGAATAT+TGG | + | tig0014103:55229-55248 | None:intergenic | 15.0% |
| !! | TTAATTTCATTTCGAAATTA+TGG | + | tig0014103:55501-55520 | None:intergenic | 15.0% |
| !! | TGATAAATTTAATTAAGGTA+TGG | + | tig0014103:55530-55549 | None:intergenic | 15.0% |
| !! | GTTTCTGATAAATTTAATTA+AGG | + | tig0014103:55535-55554 | None:intergenic | 15.0% |
| !! | AGATTGATTATAATATGTAT+AGG | - | tig0014103:56345-56364 | Msa1353870:CDS | 15.0% |
| !!! | TATTTTTATGTTTTCTTTCT+TGG | - | tig0014103:56384-56403 | Msa1353870:intron | 15.0% |
| !!! | TTCAATTAGAAATTTACTTT+TGG | + | tig0014103:57622-57641 | None:intergenic | 15.0% |
| !!! | TGTAAACATTTTCATATTGA+AGG | + | tig0014103:55628-55647 | None:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | + | tig0014103:55771-55790 | None:intergenic | 20.0% |
| !! | AGAATTAAATCTTACTATGA+GGG | - | tig0014103:56046-56065 | Msa1353870:CDS | 20.0% |
| !! | ACACATCAATGTTTAATTAA+AGG | + | tig0014103:56568-56587 | None:intergenic | 20.0% |
| !! | GGTTGTTAAGATATAAATAA+AGG | - | tig0014103:56658-56677 | Msa1353870:intron | 20.0% |
| !! | ATATAAATAAAGGATTAGAG+AGG | - | tig0014103:56668-56687 | Msa1353870:intron | 20.0% |
| !! | TATAAATAAAGGATTAGAGA+GGG | - | tig0014103:56669-56688 | Msa1353870:intron | 20.0% |
| !! | ATTATGAATGTGTCAATAAA+TGG | - | tig0014103:57100-57119 | Msa1353870:CDS | 20.0% |
| !! | ATTCAAATGGATGATAAATT+GGG | + | tig0014103:57272-57291 | None:intergenic | 20.0% |
| !! | AAAAATCAATGCATAGAAAA+AGG | + | tig0014103:57411-57430 | None:intergenic | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | - | tig0014103:57763-57782 | Msa1353870:intron | 20.0% |
| !! | TATGTATCAAACAATAACAA+TGG | - | tig0014103:57808-57827 | Msa1353870:CDS | 20.0% |
| !! | AAATCGAAAAGAAAAAATGT+AGG | - | tig0014103:58225-58244 | Msa1353870:five_prime_UTR | 20.0% |
| !! | AATCGAAAAGAAAAAATGTA+GGG | - | tig0014103:58226-58245 | Msa1353870:five_prime_UTR | 20.0% |
| !! | TTCGGATTATATAATTCAAA+AGG | + | tig0014103:58272-58291 | None:intergenic | 20.0% |
| !! | TTTTATATGAGAAAAGCAGA+AGG | + | tig0014103:54966-54985 | None:intergenic | 25.0% |
| ! | TCCTAAATTCTTTACCAAAA+TGG | - | tig0014103:55079-55098 | Msa1353870:three_prime_UTR | 25.0% |
| !!! | ACCATTTTGGTAAAGAATTT+AGG | + | tig0014103:55083-55102 | None:intergenic | 25.0% |
| ! | GAAATTATGGTAAAGTTGAA+TGG | + | tig0014103:55488-55507 | None:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | + | tig0014103:55917-55936 | None:intergenic | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | + | tig0014103:55918-55937 | None:intergenic | 25.0% |
| ! | ATAGAAATTGTAGTTCTTGA+TGG | - | tig0014103:55924-55943 | Msa1353870:CDS | 25.0% |
| ! | AATATTGTGAAAGAGAGAAA+TGG | - | tig0014103:56002-56021 | Msa1353870:CDS | 25.0% |
| ! | ATATTGTGAAAGAGAGAAAT+GGG | - | tig0014103:56003-56022 | Msa1353870:CDS | 25.0% |
| ! | GAGAATTAAATCTTACTATG+AGG | - | tig0014103:56045-56064 | Msa1353870:CDS | 25.0% |
| ! | ATCTTTAACAACAAAAGCTT+CGG | + | tig0014103:56201-56220 | None:intergenic | 25.0% |
| !!! | TTTATTTCTGTGTTCTTTCT+TGG | - | tig0014103:56446-56465 | Msa1353870:intron | 25.0% |
| ! | GCTGTTAATTAACAATTAGT+TGG | - | tig0014103:56599-56618 | Msa1353870:intron | 25.0% |
| ! | ACACAATTATAGGACTAAAA+AGG | + | tig0014103:56730-56749 | None:intergenic | 25.0% |
| ! | ATTCTTTCTGACACAATTAT+AGG | + | tig0014103:56740-56759 | None:intergenic | 25.0% |
| !!! | GAATTATGTTATTTCCACAT+TGG | - | tig0014103:56756-56775 | Msa1353870:intron | 25.0% |
| ! | AAGATATAACAAACCAACTA+TGG | + | tig0014103:56810-56829 | None:intergenic | 25.0% |
| !!! | ATAGTTGGTTTGTTATATCT+TGG | - | tig0014103:56809-56828 | Msa1353870:intron | 25.0% |
| ! | ACAAAAAATTGACCTCAAAA+GGG | - | tig0014103:56969-56988 | Msa1353870:intron | 25.0% |
| ! | TTCAAATGGATGATAAATTG+GGG | + | tig0014103:57271-57290 | None:intergenic | 25.0% |
| ! | CATTCAAATGGATGATAAAT+TGG | + | tig0014103:57273-57292 | None:intergenic | 25.0% |
| ! | GCACATTAAATGAACTATAT+AGG | + | tig0014103:57436-57455 | None:intergenic | 25.0% |
| ! | TTTCAAAGCAATAATCATCA+AGG | - | tig0014103:57727-57746 | Msa1353870:intron | 25.0% |
| ! | AACAATAACAATGGACAAAT+AGG | - | tig0014103:57817-57836 | Msa1353870:CDS | 25.0% |
| ! | AAAATATAGCGAGTATATCT+TGG | - | tig0014103:58068-58087 | Msa1353870:intron | 25.0% |
| !!! | TTTTAGTTAAGCCCATTTTA+AGG | - | tig0014103:58108-58127 | Msa1353870:CDS | 25.0% |
| ! | TTCTTATCTCATCAACATTT+CGG | + | tig0014103:58290-58309 | None:intergenic | 25.0% |
| GTTATTGTTGGTGTAAGAAA+AGG | + | tig0014103:55044-55063 | None:intergenic | 30.0% | |
| ! | AAAACGTTTTGCAACCATTT+TGG | + | tig0014103:55096-55115 | None:intergenic | 30.0% |
| ! | TGAATATTGGGTTGTTTGAT+TGG | + | tig0014103:55216-55235 | None:intergenic | 30.0% |
| GAGTAATTAATGTACAGTAG+AGG | + | tig0014103:55363-55382 | None:intergenic | 30.0% | |
| GGTAATAGGAGAAATTGTTA+TGG | - | tig0014103:55401-55420 | Msa1353870:CDS | 30.0% | |
| ATATGATTAGGTGAATGAAG+AGG | - | tig0014103:55665-55684 | Msa1353870:intron | 30.0% | |
| AATGTGATTCTTGTTGACAA+AGG | - | tig0014103:55858-55877 | Msa1353870:intron | 30.0% | |
| ! | AGATTTTCCTCCTAGTAAAA+AGG | - | tig0014103:55947-55966 | Msa1353870:CDS | 30.0% |
| ! | CATGATGATTCCTTTTTACT+AGG | + | tig0014103:55960-55979 | None:intergenic | 30.0% |
| CTAGTAAAAAGGAATCATCA+TGG | - | tig0014103:55958-55977 | Msa1353870:CDS | 30.0% | |
| TTTAATTCTCCTGTAAGCAA+TGG | + | tig0014103:56035-56054 | None:intergenic | 30.0% | |
| TTAAATCTTACTATGAGGGA+TGG | - | tig0014103:56050-56069 | Msa1353870:CDS | 30.0% | |
| !! | TTTGTTGTTAAAGATCATCG+CGG | - | tig0014103:56206-56225 | Msa1353870:intron | 30.0% |
| CATGCTTGCATATAAATTCA+AGG | + | tig0014103:56318-56337 | None:intergenic | 30.0% | |
| GTGATGCATACATATGAAAA+GGG | + | tig0014103:56495-56514 | None:intergenic | 30.0% | |
| TGTGATGCATACATATGAAA+AGG | + | tig0014103:56496-56515 | None:intergenic | 30.0% | |
| AGTTAACTAATCTAGTTACC+TGG | - | tig0014103:56520-56539 | Msa1353870:intron | 30.0% | |
| TAACAAACCAACTATGGAAA+GGG | + | tig0014103:56804-56823 | None:intergenic | 30.0% | |
| ATAACAAACCAACTATGGAA+AGG | + | tig0014103:56805-56824 | None:intergenic | 30.0% | |
| !! | GGTTTGTTATATCTTGGTTA+AGG | - | tig0014103:56815-56834 | Msa1353870:intron | 30.0% |
| CTAGAGAAAATTGGTAAAGA+TGG | - | tig0014103:56938-56957 | Msa1353870:intron | 30.0% | |
| !!! | CTTTTGAGGTCAATTTTTTG+TGG | + | tig0014103:56970-56989 | None:intergenic | 30.0% |
| CACAAAAAATTGACCTCAAA+AGG | - | tig0014103:56968-56987 | Msa1353870:intron | 30.0% | |
| ! | TGGTATTGCAATCAGATTTT+AGG | - | tig0014103:57157-57176 | Msa1353870:CDS | 30.0% |
| TTTGGCATATTGCATTCAAA+TGG | + | tig0014103:57285-57304 | None:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | - | tig0014103:57285-57304 | Msa1353870:CDS | 30.0% | |
| TAGAAAAAGGTAGAAGTAGA+AGG | + | tig0014103:57398-57417 | None:intergenic | 30.0% | |
| ! | TTTTATGAATCTCACTCTAC+AGG | - | tig0014103:57688-57707 | Msa1353870:intron | 30.0% |
| !! | ATTGCTTTGAAATTGATCCA+TGG | + | tig0014103:57719-57738 | None:intergenic | 30.0% |
| TGTGAATCTAAGAAGCTATA+AGG | + | tig0014103:57895-57914 | None:intergenic | 30.0% | |
| TTCTTAGATTCACAATCAGA+CGG | - | tig0014103:57901-57920 | Msa1353870:intron | 30.0% | |
| CAAAACACATGAAAAAGTAG+CGG | - | tig0014103:58016-58035 | Msa1353870:intron | 30.0% | |
| ! | AAAAAATGTAGGGTGTTTGA+GGG | - | tig0014103:58236-58255 | Msa1353870:five_prime_UTR | 30.0% |
| !! | GGGTTGTTTGATTGGTTTAA+GGG | + | tig0014103:55208-55227 | None:intergenic | 35.0% |
| !! | TGGGTTGTTTGATTGGTTTA+AGG | + | tig0014103:55209-55228 | None:intergenic | 35.0% |
| ! | AACATGCAAAACCTTTTCTC+TGG | - | tig0014103:55429-55448 | Msa1353870:CDS | 35.0% |
| CTTACCACTCTTCTAAGTAA+AGG | + | tig0014103:55462-55481 | None:intergenic | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | + | tig0014103:55741-55760 | None:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | - | tig0014103:55740-55759 | Msa1353870:CDS | 35.0% | |
| CTTTCACTTCCAATATTCAC+CGG | - | tig0014103:55801-55820 | Msa1353870:intron | 35.0% | |
| ATTCTACTACCGGTGAATAT+TGG | + | tig0014103:55813-55832 | None:intergenic | 35.0% | |
| CATGTCTAGTATTCTACTAC+CGG | + | tig0014103:55823-55842 | None:intergenic | 35.0% | |
| AGTAGAATACTAGACATGGA+TGG | - | tig0014103:55825-55844 | Msa1353870:intron | 35.0% | |
| ATTTCTATCTTGATTGGGTG+AGG | + | tig0014103:55912-55931 | None:intergenic | 35.0% | |
| ! | GATGATTCCTTTTTACTAGG+AGG | + | tig0014103:55957-55976 | None:intergenic | 35.0% |
| ACGTATCCAGCTAGAATTAT+CGG | + | tig0014103:56105-56124 | None:intergenic | 35.0% | |
| !! | TCTCTAGAAAGAAAAGCATC+CGG | - | tig0014103:56692-56711 | Msa1353870:intron | 35.0% |
| TATTTCCACATTGGTACCAT+AGG | - | tig0014103:56765-56784 | Msa1353870:intron | 35.0% | |
| GGGTGAAAATAAAATGCCTA+TGG | + | tig0014103:56784-56803 | None:intergenic | 35.0% | |
| ! | ATTTTCACCCTTTCCATAGT+TGG | - | tig0014103:56794-56813 | Msa1353870:intron | 35.0% |
| ! | TGCAATCAGATTTTAGGCAT+TGG | - | tig0014103:57163-57182 | Msa1353870:CDS | 35.0% |
| TTGGAATGTCAGAGAAAATG+TGG | - | tig0014103:57182-57201 | Msa1353870:CDS | 35.0% | |
| TGGAATGTCAGAGAAAATGT+GGG | - | tig0014103:57183-57202 | Msa1353870:CDS | 35.0% | |
| ACATGCAAAGACTTGTGTAA+TGG | - | tig0014103:57219-57238 | Msa1353870:CDS | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | - | tig0014103:57220-57239 | Msa1353870:CDS | 35.0% | |
| !! | TGATGTTAGCTCTAACCATT+TGG | + | tig0014103:57303-57322 | None:intergenic | 35.0% |
| ATGGTTAGAGCTAACATCAA+TGG | - | tig0014103:57304-57323 | Msa1353870:CDS | 35.0% | |
| ! | CCAATGTGTTGTTAATGTCT+CGG | + | tig0014103:57345-57364 | None:intergenic | 35.0% |
| CGAGACATTAACAACACATT+GGG | - | tig0014103:57343-57362 | Msa1353870:CDS | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | - | tig0014103:57487-57506 | Msa1353870:CDS | 35.0% | |
| ! | AACGTTGCTTTGTTAACTCA+AGG | - | tig0014103:57536-57555 | Msa1353870:CDS | 35.0% |
| ATGAATAGTGATGTGGGAAA+TGG | + | tig0014103:57859-57878 | None:intergenic | 35.0% | |
| CCATTCATGAATAGTGATGT+GGG | + | tig0014103:57865-57884 | None:intergenic | 35.0% | |
| CCACATCACTATTCATGAAT+GGG | - | tig0014103:57863-57882 | Msa1353870:intron | 35.0% | |
| CTTGAAGCTCTATCAATGAT+TGG | + | tig0014103:57955-57974 | None:intergenic | 35.0% | |
| CAATCATTGATAGAGCTTCA+AGG | - | tig0014103:57953-57972 | Msa1353870:intron | 35.0% | |
| ATTTGACGCAGCCTTAAAAT+GGG | + | tig0014103:58122-58141 | None:intergenic | 35.0% | |
| TATTTGACGCAGCCTTAAAA+TGG | + | tig0014103:58123-58142 | None:intergenic | 35.0% | |
| !!! | TTTTAAGGCTGCGTCAAATA+TGG | - | tig0014103:58123-58142 | Msa1353870:CDS | 35.0% |
| ! | TTTAAGGCTGCGTCAAATAT+GGG | - | tig0014103:58124-58143 | Msa1353870:CDS | 35.0% |
| ! | GAAAAAATGTAGGGTGTTTG+AGG | - | tig0014103:58235-58254 | Msa1353870:five_prime_UTR | 35.0% |
| TGAGAAAAGCAGAAGGTTCT+TGG | + | tig0014103:54959-54978 | None:intergenic | 40.0% | |
| TGTAAGAAAAGGTTGCAGTG+AGG | + | tig0014103:55033-55052 | None:intergenic | 40.0% | |
| GCTTGCTCTGATGTTATTGT+TGG | + | tig0014103:55056-55075 | None:intergenic | 40.0% | |
| ACAATAACATCAGAGCAAGC+TGG | - | tig0014103:55056-55075 | Msa1353870:three_prime_UTR | 40.0% | |
| GTTCTCATGCGTTTGTCATT+TGG | + | tig0014103:55149-55168 | None:intergenic | 40.0% | |
| ACTCTCAATTCTCATGTGAC+AGG | - | tig0014103:55379-55398 | Msa1353870:CDS | 40.0% | |
| CTCTCAATTCTCATGTGACA+GGG | - | tig0014103:55380-55399 | Msa1353870:CDS | 40.0% | |
| TTCTCATGTGACAGGGTAAT+AGG | - | tig0014103:55387-55406 | Msa1353870:CDS | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | - | tig0014103:55455-55474 | Msa1353870:CDS | 40.0% | |
| TGATTAGGTGAATGAAGAGG+TGG | - | tig0014103:55668-55687 | Msa1353870:intron | 40.0% | |
| !! | GACTTTGTTATTGATCGTGG+TGG | + | tig0014103:55717-55736 | None:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | + | tig0014103:55720-55739 | None:intergenic | 40.0% |
| CGGTAGTAGAATACTAGACA+TGG | - | tig0014103:55821-55840 | Msa1353870:intron | 40.0% | |
| GTAGACTTGTAGGGACTATT+TGG | + | tig0014103:55890-55909 | None:intergenic | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | + | tig0014103:56083-56102 | None:intergenic | 40.0% | |
| AGTTCACCGATAATTCTAGC+TGG | - | tig0014103:56096-56115 | Msa1353870:intron | 40.0% | |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | - | tig0014103:56141-56160 | Msa1353870:intron | 40.0% |
| CTAGTTACCTGGTATGTACT+TGG | - | tig0014103:56531-56550 | Msa1353870:intron | 40.0% | |
| ATTACCACCAAGTACATACC+AGG | + | tig0014103:56541-56560 | None:intergenic | 40.0% | |
| AAATGCCTATGGTACCAATG+TGG | + | tig0014103:56773-56792 | None:intergenic | 40.0% | |
| ! | CTTCGTCCTTTAGATTTGGT+GGG | + | tig0014103:56910-56929 | None:intergenic | 40.0% |
| ACTTCGTCCTTTAGATTTGG+TGG | + | tig0014103:56911-56930 | None:intergenic | 40.0% | |
| CACACTTCGTCCTTTAGATT+TGG | + | tig0014103:56914-56933 | None:intergenic | 40.0% | |
| CAAATCTAAAGGACGAAGTG+TGG | - | tig0014103:56912-56931 | Msa1353870:intron | 40.0% | |
| ! | TACTGTGGTAATCCCTTTTG+AGG | + | tig0014103:56984-57003 | None:intergenic | 40.0% |
| CTTGAGAAACTCTTGTACTG+TGG | + | tig0014103:56999-57018 | None:intergenic | 40.0% | |
| AACAAACGTTATGTCTACCG+TGG | - | tig0014103:57244-57263 | Msa1353870:CDS | 40.0% | |
| ! | GTGTTGTTAATGTCTCGGAT+GGG | + | tig0014103:57340-57359 | None:intergenic | 40.0% |
| ! | TGTGTTGTTAATGTCTCGGA+TGG | + | tig0014103:57341-57360 | None:intergenic | 40.0% |
| CCGAGACATTAACAACACAT+TGG | - | tig0014103:57342-57361 | Msa1353870:CDS | 40.0% | |
| CATTAACAACACATTGGGCA+AGG | - | tig0014103:57348-57367 | Msa1353870:CDS | 40.0% | |
| ! | TGAGAGAAGCATATGCTAGA+TGG | - | tig0014103:57477-57496 | Msa1353870:CDS | 40.0% |
| AATAGTGATGTGGGAAATGG+TGG | + | tig0014103:57856-57875 | None:intergenic | 40.0% | |
| CCCACATCACTATTCATGAA+TGG | - | tig0014103:57862-57881 | Msa1353870:intron | 40.0% | |
| CCCATTCATGAATAGTGATG+TGG | + | tig0014103:57866-57885 | None:intergenic | 40.0% | |
| TTAGATTCACAATCAGACGG+TGG | - | tig0014103:57904-57923 | Msa1353870:intron | 40.0% | |
| ! | ATGATTGGTCCTGAACTTGA+AGG | + | tig0014103:57940-57959 | None:intergenic | 40.0% |
| TCATTGATAGAGCTTCAAGG+TGG | - | tig0014103:57956-57975 | Msa1353870:intron | 40.0% | |
| ACACATGAAAAAGTAGCGGT+TGG | - | tig0014103:58020-58039 | Msa1353870:intron | 40.0% | |
| !!! | TATGGGCGTTGTTTCTCTTT+TGG | - | tig0014103:58141-58160 | Msa1353870:CDS | 40.0% |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | - | tig0014103:55434-55453 | Msa1353870:CDS | 45.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | + | tig0014103:55443-55462 | None:intergenic | 45.0% | |
| TTGGGTGAGGTAGACTTGTA+GGG | + | tig0014103:55899-55918 | None:intergenic | 45.0% | |
| ATTGGGTGAGGTAGACTTGT+AGG | + | tig0014103:55900-55919 | None:intergenic | 45.0% | |
| !! | GGAATCATCATGGACTAGTG+AGG | - | tig0014103:55968-55987 | Msa1353870:CDS | 45.0% |
| GGGAAAAGACCATTGCTTAC+AGG | - | tig0014103:56023-56042 | Msa1353870:CDS | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | - | tig0014103:56065-56084 | Msa1353870:CDS | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | - | tig0014103:56066-56085 | Msa1353870:CDS | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | - | tig0014103:56067-56086 | Msa1353870:CDS | 45.0% | |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | - | tig0014103:56140-56159 | Msa1353870:intron | 45.0% |
| ! | CAAAGTGTCCGAATTCGTGA+AGG | - | tig0014103:56170-56189 | Msa1353870:intron | 45.0% |
| GTTACCTGGTATGTACTTGG+TGG | - | tig0014103:56534-56553 | Msa1353870:intron | 45.0% | |
| !! | AAAGAAAAGCATCCGGTTCC+AGG | - | tig0014103:56699-56718 | Msa1353870:intron | 45.0% |
| !! | AAGAAAAGCATCCGGTTCCA+GGG | - | tig0014103:56700-56719 | Msa1353870:intron | 45.0% |
| AAAAAGGTTGACCCTGGAAC+CGG | + | tig0014103:56714-56733 | None:intergenic | 45.0% | |
| AGGACTAAAAAGGTTGACCC+TGG | + | tig0014103:56720-56739 | None:intergenic | 45.0% | |
| ACACCACCCACCAAATCTAA+AGG | - | tig0014103:56901-56920 | Msa1353870:intron | 45.0% | |
| GTGTGGCGTCTAGAGAAAAT+TGG | - | tig0014103:56929-56948 | Msa1353870:intron | 45.0% | |
| TGTCCGTAGTTGATCCTCAT+AGG | - | tig0014103:57020-57039 | Msa1353870:intron | 45.0% | |
| GAGCCTATGAGGATCAACTA+CGG | + | tig0014103:57026-57045 | None:intergenic | 45.0% | |
| TGATCCTCATAGGCTCAGAA+AGG | - | tig0014103:57030-57049 | Msa1353870:intron | 45.0% | |
| TGTACCTTTCTGAGCCTATG+AGG | + | tig0014103:57037-57056 | None:intergenic | 45.0% | |
| GGATGATAAATTGGGGTCCA+CGG | + | tig0014103:57264-57283 | None:intergenic | 45.0% | |
| GTTAATGTCTCGGATGGGAA+TGG | + | tig0014103:57335-57354 | None:intergenic | 45.0% | |
| ! | TGCTAGATGGAATGAGTTGG+AGG | - | tig0014103:57490-57509 | Msa1353870:CDS | 45.0% |
| ! | TTTGGTGATACTCTCGAGAC+TGG | - | tig0014103:57781-57800 | Msa1353870:intron | 45.0% |
| TGGACAAATAGGTTGCATCG+AGG | - | tig0014103:57828-57847 | Msa1353870:CDS | 45.0% | |
| GGACAAATAGGTTGCATCGA+GGG | - | tig0014103:57829-57848 | Msa1353870:CDS | 45.0% | |
| GACAAATAGGTTGCATCGAG+GGG | - | tig0014103:57830-57849 | Msa1353870:CDS | 45.0% | |
| ! | GATCTAACGCCTTCAAGTTC+AGG | - | tig0014103:57928-57947 | Msa1353870:intron | 45.0% |
| TTCATAACCCGAACCAAGTG+TGG | + | tig0014103:58207-58226 | None:intergenic | 45.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | + | tig0014103:56161-56180 | None:intergenic | 50.0% |
| CGGTCATGCCTTCACGAATT+CGG | + | tig0014103:56181-56200 | None:intergenic | 50.0% | |
| !! | CGTCCTTTAGATTTGGTGGG+TGG | + | tig0014103:56907-56926 | None:intergenic | 50.0% |
| TGTCTCGGATGGGAATGGTT+TGG | + | tig0014103:57330-57349 | None:intergenic | 50.0% | |
| TCACTCTACAGGTCGAACCA+TGG | - | tig0014103:57699-57718 | Msa1353870:intron | 50.0% | |
| ! | CTTTTCCCACTCTCCACACT+TGG | - | tig0014103:58191-58210 | Msa1353870:five_prime_UTR | 50.0% |
| CCGAACCAAGTGTGGAGAGT+GGG | + | tig0014103:58199-58218 | None:intergenic | 55.0% | |
| CCCACTCTCCACACTTGGTT+CGG | - | tig0014103:58196-58215 | Msa1353870:five_prime_UTR | 55.0% | |
| CCACTCTCCACACTTGGTTC+GGG | - | tig0014103:58197-58216 | Msa1353870:five_prime_UTR | 55.0% | |
| CCCGAACCAAGTGTGGAGAG+TGG | + | tig0014103:58200-58219 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014103 | gene | 54955 | 58315 | 54955 | ID=Msa1353870;Name=Msa1353870 |
| tig0014103 | mRNA | 54955 | 58315 | 54955 | ID=Msa1353870-mRNA-1;Parent=Msa1353870;Name=Msa1353870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|1|1|7|331|487 |
| tig0014103 | exon | 54955 | 55560 | 54955 | ID=Msa1353870-mRNA-1:exon:8869;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 55713 | 55812 | 55713 | ID=Msa1353870-mRNA-1:exon:8868;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 55901 | 56098 | 55901 | ID=Msa1353870-mRNA-1:exon:8867;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 56219 | 56379 | 56219 | ID=Msa1353870-mRNA-1:exon:8866;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 57037 | 57595 | 57037 | ID=Msa1353870-mRNA-1:exon:8865;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 57794 | 57869 | 57794 | ID=Msa1353870-mRNA-1:exon:8864;Parent=Msa1353870-mRNA-1 |
| tig0014103 | exon | 58078 | 58315 | 58078 | ID=Msa1353870-mRNA-1:exon:8863;Parent=Msa1353870-mRNA-1 |
| tig0014103 | five_prime_UTR | 58173 | 58315 | 58173 | ID=Msa1353870-mRNA-1:five_prime_utr;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 58078 | 58172 | 58078 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 57794 | 57869 | 57794 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 57037 | 57595 | 57037 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 56219 | 56379 | 56219 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 55901 | 56098 | 55901 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 55713 | 55812 | 55713 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | CDS | 55286 | 55560 | 55286 | ID=Msa1353870-mRNA-1:cds;Parent=Msa1353870-mRNA-1 |
| tig0014103 | three_prime_UTR | 54955 | 55285 | 54955 | ID=Msa1353870-mRNA-1:three_prime_utr;Parent=Msa1353870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
