Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108370 | XP_003623274.1 | 85.470 | 117 | 7 | 2 | 1 | 113 | 1 | 111 | 5.42e-62 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108370 | G7KRF0 | 85.470 | 117 | 7 | 2 | 1 | 113 | 1 | 111 | 2.59e-62 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1108370 | 0.808553 | 2.926824e-50 | -8.615850e-47 |
| Msa0027860 | Msa1108370 | 0.809315 | 2.010400e-50 | -8.615850e-47 |
| Msa0604280 | Msa1108370 | 0.805685 | 1.184818e-49 | -8.615850e-47 |
| Msa0631700 | Msa1108370 | 0.804101 | 2.538812e-49 | -8.615850e-47 |
| Msa0634290 | Msa1108370 | 0.837491 | 5.039036e-57 | -8.615850e-47 |
| Msa0668220 | Msa1108370 | 0.800154 | 1.646344e-48 | -8.615850e-47 |
| Msa0668230 | Msa1108370 | 0.810777 | 9.735348e-51 | -8.615850e-47 |
| Msa0685080 | Msa1108370 | 0.800119 | 1.673614e-48 | -8.615850e-47 |
| Msa0711240 | Msa1108370 | 0.806467 | 8.109436e-50 | -8.615850e-47 |
| Msa0711250 | Msa1108370 | 0.807271 | 5.484509e-50 | -8.615850e-47 |
| Msa0716000 | Msa1108370 | 0.806777 | 6.975520e-50 | -8.615850e-47 |
| Msa0168010 | Msa1108370 | 0.803612 | 3.208331e-49 | -8.615850e-47 |
| Msa0195190 | Msa1108370 | 0.816190 | 6.282141e-52 | -8.615850e-47 |
| Msa0207640 | Msa1108370 | 0.823412 | 1.404625e-53 | -8.615850e-47 |
| Msa0209320 | Msa1108370 | 0.800572 | 1.353342e-48 | -8.615850e-47 |
| Msa0396790 | Msa1108370 | 0.802966 | 4.364350e-49 | -8.615850e-47 |
| Msa0414480 | Msa1108370 | 0.817533 | 3.139640e-52 | -8.615850e-47 |
| Msa0418160 | Msa1108370 | 0.821508 | 3.889117e-53 | -8.615850e-47 |
| Msa0444400 | Msa1108370 | 0.815282 | 1.001269e-51 | -8.615850e-47 |
| Msa0464310 | Msa1108370 | 0.843615 | 1.256256e-58 | -8.615850e-47 |
| Msa0469450 | Msa1108370 | 0.814236 | 1.707173e-51 | -8.615850e-47 |
| Msa0469460 | Msa1108370 | 0.800146 | 1.652805e-48 | -8.615850e-47 |
| Msa0996980 | Msa1108370 | 0.812448 | 4.217815e-51 | -8.615850e-47 |
| Msa0996990 | Msa1108370 | 0.809925 | 1.486847e-50 | -8.615850e-47 |
| Msa1024310 | Msa1108370 | 0.957516 | 2.248777e-115 | -8.615850e-47 |
| Msa1048390 | Msa1108370 | 0.805387 | 1.368349e-49 | -8.615850e-47 |
| Msa1064940 | Msa1108370 | 0.854321 | 1.330133e-61 | -8.615850e-47 |
| Msa0240580 | Msa1108370 | 0.808496 | 3.009555e-50 | -8.615850e-47 |
| Msa0274260 | Msa1108370 | 0.802981 | 4.333367e-49 | -8.615850e-47 |
| Msa0278950 | Msa1108370 | 0.804128 | 2.506335e-49 | -8.615850e-47 |
| Msa0278960 | Msa1108370 | 0.814158 | 1.776198e-51 | -8.615850e-47 |
| Msa0323090 | Msa1108370 | 0.805531 | 1.276328e-49 | -8.615850e-47 |
| Msa0346170 | Msa1108370 | 0.804272 | 2.338689e-49 | -8.615850e-47 |
| Msa1107220 | Msa1108370 | 0.810407 | 1.170772e-50 | -8.615850e-47 |
| Msa1108370 | Msa1120330 | 0.801035 | 1.088437e-48 | -8.615850e-47 |
| Msa1108370 | Msa1150760 | 0.806058 | 9.890077e-50 | -8.615850e-47 |
| Msa1108370 | Msa1153690 | 0.813762 | 2.172424e-51 | -8.615850e-47 |
| Msa1108370 | Msa1355340 | 0.827141 | 1.842834e-54 | -8.615850e-47 |
| Msa0491800 | Msa1108370 | 0.803897 | 2.799103e-49 | -8.615850e-47 |
| Msa0491830 | Msa1108370 | 0.821013 | 5.059665e-53 | -8.615850e-47 |
| Msa0515130 | Msa1108370 | 0.813669 | 2.276736e-51 | -8.615850e-47 |
| Msa0535570 | Msa1108370 | 0.803591 | 3.240557e-49 | -8.615850e-47 |
| Msa0538440 | Msa1108370 | 0.832414 | 9.581612e-56 | -8.615850e-47 |
| Msa0538530 | Msa1108370 | 0.834111 | 3.620685e-56 | -8.615850e-47 |
| Msa0554660 | Msa1108370 | 0.809728 | 1.639489e-50 | -8.615850e-47 |
| Msa0584360 | Msa1108370 | 0.810533 | 1.099433e-50 | -8.615850e-47 |
| Msa0588730 | Msa1108370 | 0.806143 | 9.491114e-50 | -8.615850e-47 |
| Msa0589720 | Msa1108370 | 0.804345 | 2.259103e-49 | -8.615850e-47 |
| Msa0589740 | Msa1108370 | 0.806593 | 7.630289e-50 | -8.615850e-47 |
| Msa0594330 | Msa1108370 | 0.825357 | 4.899796e-54 | -8.615850e-47 |
| Msa0893220 | Msa1108370 | 0.817641 | 2.968424e-52 | -8.615850e-47 |
| Msa0896920 | Msa1108370 | 0.836186 | 1.084529e-56 | -8.615850e-47 |
| Msa0932900 | Msa1108370 | 0.819270 | 1.268733e-52 | -8.615850e-47 |
| Msa0932930 | Msa1108370 | 0.826885 | 2.122126e-54 | -8.615850e-47 |
| Msa0933610 | Msa1108370 | 0.803471 | 3.431001e-49 | -8.615850e-47 |
| Msa0964510 | Msa1108370 | 0.813915 | 2.009455e-51 | -8.615850e-47 |
| Msa0970790 | Msa1108370 | 0.831902 | 1.282389e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108370 | MtrunA17_Chr7g0242141 | 85.470 | 117 | 7 | 2 | 1 | 113 | 1 | 111 | 4.99e-66 | 196 |
| Msa1108370 | MtrunA17_Chr7g0242081 | 51.961 | 102 | 43 | 3 | 30 | 126 | 27 | 127 | 4.18e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGAATCGTCAGCAATTC+GGG | 0.244167 | 7_3:+51212158 | Msa1108370:CDS |
| ACCCGAATTGCTGACGATTC+AGG | 0.254329 | 7_3:-51212159 | None:intergenic |
| TAAGAGGGGATTCTCTTATA+AGG | 0.293421 | 7_3:+51210744 | Msa1108370:CDS |
| GGAGATCGCGGTTTCTTGAT+TGG | 0.347991 | 7_3:-51210866 | None:intergenic |
| ACCCTGAATCGTCAGCAATT+CGG | 0.349585 | 7_3:+51212157 | Msa1108370:CDS |
| CCCGAATTGCTGACGATTCA+GGG | 0.374699 | 7_3:-51212158 | None:intergenic |
| ATAACTTGGAAAGCAATTTC+AGG | 0.384541 | 7_3:-51212311 | None:intergenic |
| CGCGGTTTCTTGATTGGAGG+GGG | 0.395599 | 7_3:-51210860 | None:intergenic |
| GGAGAACTCCTTCGCAAACT+TGG | 0.406549 | 7_3:+51212288 | Msa1108370:CDS |
| GTCAGCAATTCGGGTAAGTC+TGG | 0.408786 | 7_3:+51212167 | Msa1108370:CDS |
| TAGATATCAGTTTCATAACT+TGG | 0.426133 | 7_3:-51212325 | None:intergenic |
| AAGAGGGGATTCTCTTATAA+GGG | 0.477382 | 7_3:+51210745 | Msa1108370:CDS |
| ATCTCCGATCTTACAAATCA+AGG | 0.478783 | 7_3:+51210883 | Msa1108370:CDS |
| TAAGGGAAATAGTTATCCTT+CGG | 0.485583 | 7_3:+51210762 | Msa1108370:CDS |
| TCTTCCATCGCGTTGTCTGT+TGG | 0.511505 | 7_3:-51212231 | None:intergenic |
| ATCGCGGTTTCTTGATTGGA+GGG | 0.519025 | 7_3:-51210862 | None:intergenic |
| TGATCCTTGATTTGTAAGAT+CGG | 0.527760 | 7_3:-51210887 | None:intergenic |
| TACAATGAATTGCACAAACA+CGG | 0.528310 | 7_3:+51210814 | Msa1108370:CDS |
| GGTAAGTCTGGAGGTGAACA+AGG | 0.534232 | 7_3:+51212179 | Msa1108370:CDS |
| GATCGCGGTTTCTTGATTGG+AGG | 0.552553 | 7_3:-51210863 | None:intergenic |
| ATCAAGTAAGTTATGGGTGA+AGG | 0.558905 | 7_3:+51210715 | None:intergenic |
| TGGGTGAAGGCGATCATAAG+AGG | 0.561952 | 7_3:+51210728 | Msa1108370:CDS |
| GCAGCTGTGTTGGTTTCTCA+AGG | 0.564887 | 7_3:+51212267 | Msa1108370:CDS |
| TGCACACACCGCAGCTGTGT+TGG | 0.571415 | 7_3:+51212257 | Msa1108370:CDS |
| GGGTGAAGGCGATCATAAGA+GGG | 0.583008 | 7_3:+51210729 | Msa1108370:CDS |
| ACAATGAATTGCACAAACAC+GGG | 0.606791 | 7_3:+51210815 | Msa1108370:CDS |
| ATTTGTAAGATCGGAGATCG+CGG | 0.611829 | 7_3:-51210878 | None:intergenic |
| TCGCGGTTTCTTGATTGGAG+GGG | 0.613086 | 7_3:-51210861 | None:intergenic |
| TATCCTTCGGATGATGAGCA+TGG | 0.617244 | 7_3:+51210775 | Msa1108370:CDS |
| ATTTCAGGCCAAGTTTGCGA+AGG | 0.621581 | 7_3:-51212296 | None:intergenic |
| ACTCCATGCTCATCATCCGA+AGG | 0.646422 | 7_3:-51210778 | None:intergenic |
| GCGGTTTCTTGATTGGAGGG+GGG | 0.647692 | 7_3:-51210859 | None:intergenic |
| TTGAGAAACCAACACAGCTG+CGG | 0.651919 | 7_3:-51212265 | None:intergenic |
| TGTTCCAACAGACAACGCGA+TGG | 0.657088 | 7_3:+51212227 | Msa1108370:CDS |
| AGCAATTCGGGTAAGTCTGG+AGG | 0.657891 | 7_3:+51212170 | Msa1108370:CDS |
| GTAAGTCTGGAGGTGAACAA+GGG | 0.696458 | 7_3:+51212180 | Msa1108370:CDS |
| GGTGAAGGCGATCATAAGAG+GGG | 0.710139 | 7_3:+51210730 | Msa1108370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTAATAAAAAT+TGG | + | chr7_3:51211486-51211505 | Msa1108370:intron | 0.0% |
| !!! | ATTAAATTAATAATATTTTA+AGG | - | chr7_3:51211559-51211578 | None:intergenic | 0.0% |
| !!! | ATTTTTTTTTTAATAAAAAT+TGG | + | chr7_3:51211486-51211505 | Msa1108370:intron | 0.0% |
| !!! | ATTAAATTAATAATATTTTA+AGG | - | chr7_3:51211559-51211578 | None:intergenic | 0.0% |
| !!! | GACAATTTTTTTTTTTTTAA+GGG | - | chr7_3:51211071-51211090 | None:intergenic | 10.0% |
| !!! | CTATAAATTTGTTTTTTTTA+AGG | + | chr7_3:51211218-51211237 | Msa1108370:intron | 10.0% |
| !! | AACTCTATTAATTATTTATT+GGG | + | chr7_3:51211345-51211364 | Msa1108370:intron | 10.0% |
| !! | AAAAATTGATATATTTAGAT+GGG | - | chr7_3:51211387-51211406 | None:intergenic | 10.0% |
| !! | TAAAAATTGATATATTTAGA+TGG | - | chr7_3:51211388-51211407 | None:intergenic | 10.0% |
| !! | GATAAATTAATAAAGATTAA+AGG | + | chr7_3:51211617-51211636 | Msa1108370:intron | 10.0% |
| !! | AAATTAAACTATTAAACTAA+TGG | + | chr7_3:51211646-51211665 | Msa1108370:intron | 10.0% |
| !!! | TAAAAATTTCATTCAAATTT+TGG | - | chr7_3:51211817-51211836 | None:intergenic | 10.0% |
| !!! | AAAAATAGATAAAATGTTTT+AGG | - | chr7_3:51211892-51211911 | None:intergenic | 10.0% |
| !!! | GACAATTTTTTTTTTTTTAA+GGG | - | chr7_3:51211071-51211090 | None:intergenic | 10.0% |
| !!! | CTATAAATTTGTTTTTTTTA+AGG | + | chr7_3:51211218-51211237 | Msa1108370:intron | 10.0% |
| !! | AACTCTATTAATTATTTATT+GGG | + | chr7_3:51211345-51211364 | Msa1108370:intron | 10.0% |
| !! | AAAAATTGATATATTTAGAT+GGG | - | chr7_3:51211387-51211406 | None:intergenic | 10.0% |
| !! | TAAAAATTGATATATTTAGA+TGG | - | chr7_3:51211388-51211407 | None:intergenic | 10.0% |
| !! | GATAAATTAATAAAGATTAA+AGG | + | chr7_3:51211617-51211636 | Msa1108370:intron | 10.0% |
| !! | AAATTAAACTATTAAACTAA+TGG | + | chr7_3:51211646-51211665 | Msa1108370:intron | 10.0% |
| !!! | TAAAAATTTCATTCAAATTT+TGG | - | chr7_3:51211817-51211836 | None:intergenic | 10.0% |
| !!! | AAAAATAGATAAAATGTTTT+AGG | - | chr7_3:51211892-51211911 | None:intergenic | 10.0% |
| !!! | CGACAATTTTTTTTTTTTTA+AGG | - | chr7_3:51211072-51211091 | None:intergenic | 15.0% |
| !! | TATAGAGTTGAAAATTTAAA+GGG | - | chr7_3:51211109-51211128 | None:intergenic | 15.0% |
| !! | ATATAGAGTTGAAAATTTAA+AGG | - | chr7_3:51211110-51211129 | None:intergenic | 15.0% |
| !! | CAACTCTATTAATTATTTAT+TGG | + | chr7_3:51211344-51211363 | Msa1108370:intron | 15.0% |
| !!! | CTAAATAATTCTTTGTATTT+TGG | + | chr7_3:51211420-51211439 | Msa1108370:intron | 15.0% |
| !! | ATTAGTAACTGAAAATTTAT+AGG | - | chr7_3:51211447-51211466 | None:intergenic | 15.0% |
| !!! | TAATCTTTAATTTGAAGTTA+TGG | + | chr7_3:51211595-51211614 | Msa1108370:intron | 15.0% |
| !! | TTCAAAAAAAAATATCAATG+AGG | + | chr7_3:51211704-51211723 | Msa1108370:intron | 15.0% |
| !! | AAAAGAACAAACATAAAAAT+TGG | + | chr7_3:51211771-51211790 | Msa1108370:intron | 15.0% |
| !! | AAAGTAAAATAAATAGTATG+AGG | + | chr7_3:51211917-51211936 | Msa1108370:intron | 15.0% |
| !!! | CGACAATTTTTTTTTTTTTA+AGG | - | chr7_3:51211072-51211091 | None:intergenic | 15.0% |
| !! | TATAGAGTTGAAAATTTAAA+GGG | - | chr7_3:51211109-51211128 | None:intergenic | 15.0% |
| !! | ATATAGAGTTGAAAATTTAA+AGG | - | chr7_3:51211110-51211129 | None:intergenic | 15.0% |
| !! | CAACTCTATTAATTATTTAT+TGG | + | chr7_3:51211344-51211363 | Msa1108370:intron | 15.0% |
| !!! | CTAAATAATTCTTTGTATTT+TGG | + | chr7_3:51211420-51211439 | Msa1108370:intron | 15.0% |
| !! | ATTAGTAACTGAAAATTTAT+AGG | - | chr7_3:51211447-51211466 | None:intergenic | 15.0% |
| !!! | TAATCTTTAATTTGAAGTTA+TGG | + | chr7_3:51211595-51211614 | Msa1108370:intron | 15.0% |
| !! | TTCAAAAAAAAATATCAATG+AGG | + | chr7_3:51211704-51211723 | Msa1108370:intron | 15.0% |
| !! | AAAAGAACAAACATAAAAAT+TGG | + | chr7_3:51211771-51211790 | Msa1108370:intron | 15.0% |
| !! | AAAGTAAAATAAATAGTATG+AGG | + | chr7_3:51211917-51211936 | Msa1108370:intron | 15.0% |
| !! | TTCATAGATGTCAAAATTAA+AGG | - | chr7_3:51210945-51210964 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGGAAATGAA+TGG | - | chr7_3:51211000-51211019 | None:intergenic | 20.0% |
| !!! | ATTTCCATCTTTAATTTCAA+TGG | + | chr7_3:51211003-51211022 | Msa1108370:intron | 20.0% |
| !! | TAATCCATTGAAATTAAAGA+TGG | - | chr7_3:51211010-51211029 | None:intergenic | 20.0% |
| !! | TCATTTCATAATATATGCAA+GGG | - | chr7_3:51211287-51211306 | None:intergenic | 20.0% |
| !! | TTCATAGATGTCAAAATTAA+AGG | - | chr7_3:51210945-51210964 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGGAAATGAA+TGG | - | chr7_3:51211000-51211019 | None:intergenic | 20.0% |
| !!! | ATTTCCATCTTTAATTTCAA+TGG | + | chr7_3:51211003-51211022 | Msa1108370:intron | 20.0% |
| !! | TAATCCATTGAAATTAAAGA+TGG | - | chr7_3:51211010-51211029 | None:intergenic | 20.0% |
| !! | TCATTTCATAATATATGCAA+GGG | - | chr7_3:51211287-51211306 | None:intergenic | 20.0% |
| ! | ATCAATAATAACAAGTGAGT+TGG | + | chr7_3:51210906-51210925 | Msa1108370:intron | 25.0% |
| !!! | TTTTAAGGGATCTATGTTAA+AGG | - | chr7_3:51211057-51211076 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGGTGTATAAGAG+AGG | + | chr7_3:51211231-51211250 | Msa1108370:intron | 25.0% |
| !!! | TTTTTAAGGTGTATAAGAGA+GGG | + | chr7_3:51211232-51211251 | Msa1108370:intron | 25.0% |
| ! | GTCATTTCATAATATATGCA+AGG | - | chr7_3:51211288-51211307 | None:intergenic | 25.0% |
| ! | CAAACATAAAAATTGGTAAG+AGG | + | chr7_3:51211778-51211797 | Msa1108370:intron | 25.0% |
| ! | ATCAATAATAACAAGTGAGT+TGG | + | chr7_3:51210906-51210925 | Msa1108370:intron | 25.0% |
| !!! | TTTTAAGGGATCTATGTTAA+AGG | - | chr7_3:51211057-51211076 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGGTGTATAAGAG+AGG | + | chr7_3:51211231-51211250 | Msa1108370:intron | 25.0% |
| !!! | TTTTTAAGGTGTATAAGAGA+GGG | + | chr7_3:51211232-51211251 | Msa1108370:intron | 25.0% |
| ! | GTCATTTCATAATATATGCA+AGG | - | chr7_3:51211288-51211307 | None:intergenic | 25.0% |
| ! | CAAACATAAAAATTGGTAAG+AGG | + | chr7_3:51211778-51211797 | Msa1108370:intron | 25.0% |
| TAAGGGAAATAGTTATCCTT+CGG | + | chr7_3:51210762-51210781 | Msa1108370:CDS | 30.0% | |
| TACAATGAATTGCACAAACA+CGG | + | chr7_3:51210814-51210833 | Msa1108370:CDS | 30.0% | |
| !! | TGATCCTTGATTTGTAAGAT+CGG | - | chr7_3:51210890-51210909 | None:intergenic | 30.0% |
| AGTTGAAAATAGAGTTATGC+TGG | - | chr7_3:51211140-51211159 | None:intergenic | 30.0% | |
| ! | TCTATTTTCAACTTTCTGCA+TGG | + | chr7_3:51211147-51211166 | Msa1108370:intron | 30.0% |
| ! | CTATTTTCAACTTTCTGCAT+GGG | + | chr7_3:51211148-51211167 | Msa1108370:intron | 30.0% |
| ! | CTCAACAAAGATTTCAAGTA+AGG | + | chr7_3:51211184-51211203 | Msa1108370:intron | 30.0% |
| ATAACTTGGAAAGCAATTTC+AGG | - | chr7_3:51212314-51212333 | None:intergenic | 30.0% | |
| TAAGGGAAATAGTTATCCTT+CGG | + | chr7_3:51210762-51210781 | Msa1108370:CDS | 30.0% | |
| TACAATGAATTGCACAAACA+CGG | + | chr7_3:51210814-51210833 | Msa1108370:CDS | 30.0% | |
| !! | TGATCCTTGATTTGTAAGAT+CGG | - | chr7_3:51210890-51210909 | None:intergenic | 30.0% |
| AGTTGAAAATAGAGTTATGC+TGG | - | chr7_3:51211140-51211159 | None:intergenic | 30.0% | |
| ! | TCTATTTTCAACTTTCTGCA+TGG | + | chr7_3:51211147-51211166 | Msa1108370:intron | 30.0% |
| ! | CTATTTTCAACTTTCTGCAT+GGG | + | chr7_3:51211148-51211167 | Msa1108370:intron | 30.0% |
| ! | CTCAACAAAGATTTCAAGTA+AGG | + | chr7_3:51211184-51211203 | Msa1108370:intron | 30.0% |
| ATAACTTGGAAAGCAATTTC+AGG | - | chr7_3:51212314-51212333 | None:intergenic | 30.0% | |
| TAAGAGGGGATTCTCTTATA+AGG | + | chr7_3:51210744-51210763 | Msa1108370:CDS | 35.0% | |
| AAGAGGGGATTCTCTTATAA+GGG | + | chr7_3:51210745-51210764 | Msa1108370:CDS | 35.0% | |
| ACAATGAATTGCACAAACAC+GGG | + | chr7_3:51210815-51210834 | Msa1108370:CDS | 35.0% | |
| ATCTCCGATCTTACAAATCA+AGG | + | chr7_3:51210883-51210902 | Msa1108370:CDS | 35.0% | |
| TTAGTCCAATGAGCTTAACT+CGG | - | chr7_3:51211318-51211337 | None:intergenic | 35.0% | |
| TAAGAGGGGATTCTCTTATA+AGG | + | chr7_3:51210744-51210763 | Msa1108370:CDS | 35.0% | |
| AAGAGGGGATTCTCTTATAA+GGG | + | chr7_3:51210745-51210764 | Msa1108370:CDS | 35.0% | |
| ACAATGAATTGCACAAACAC+GGG | + | chr7_3:51210815-51210834 | Msa1108370:CDS | 35.0% | |
| ATCTCCGATCTTACAAATCA+AGG | + | chr7_3:51210883-51210902 | Msa1108370:CDS | 35.0% | |
| TTAGTCCAATGAGCTTAACT+CGG | - | chr7_3:51211318-51211337 | None:intergenic | 35.0% | |
| ATTTGTAAGATCGGAGATCG+CGG | - | chr7_3:51210881-51210900 | None:intergenic | 40.0% | |
| TTTCAACTTTCTGCATGGGT+CGG | + | chr7_3:51211152-51211171 | Msa1108370:intron | 40.0% | |
| ATTTGTAAGATCGGAGATCG+CGG | - | chr7_3:51210881-51210900 | None:intergenic | 40.0% | |
| TTTCAACTTTCTGCATGGGT+CGG | + | chr7_3:51211152-51211171 | Msa1108370:intron | 40.0% | |
| TATCCTTCGGATGATGAGCA+TGG | + | chr7_3:51210775-51210794 | Msa1108370:CDS | 45.0% | |
| ATCGCGGTTTCTTGATTGGA+GGG | - | chr7_3:51210865-51210884 | None:intergenic | 45.0% | |
| AGGTGTATAAGAGAGGGTCT+AGG | + | chr7_3:51211238-51211257 | Msa1108370:intron | 45.0% | |
| ACCAACCGAGTTAAGCTCAT+TGG | + | chr7_3:51211310-51211329 | Msa1108370:intron | 45.0% | |
| TCCAATGAGCTTAACTCGGT+TGG | - | chr7_3:51211314-51211333 | None:intergenic | 45.0% | |
| ACCCTGAATCGTCAGCAATT+CGG | + | chr7_3:51212157-51212176 | Msa1108370:CDS | 45.0% | |
| GTAAGTCTGGAGGTGAACAA+GGG | + | chr7_3:51212180-51212199 | Msa1108370:CDS | 45.0% | |
| TTGAGAAACCAACACAGCTG+CGG | - | chr7_3:51212268-51212287 | None:intergenic | 45.0% | |
| ATTTCAGGCCAAGTTTGCGA+AGG | - | chr7_3:51212299-51212318 | None:intergenic | 45.0% | |
| TATCCTTCGGATGATGAGCA+TGG | + | chr7_3:51210775-51210794 | Msa1108370:CDS | 45.0% | |
| ATCGCGGTTTCTTGATTGGA+GGG | - | chr7_3:51210865-51210884 | None:intergenic | 45.0% | |
| AGGTGTATAAGAGAGGGTCT+AGG | + | chr7_3:51211238-51211257 | Msa1108370:intron | 45.0% | |
| ACCAACCGAGTTAAGCTCAT+TGG | + | chr7_3:51211310-51211329 | Msa1108370:intron | 45.0% | |
| TCCAATGAGCTTAACTCGGT+TGG | - | chr7_3:51211314-51211333 | None:intergenic | 45.0% | |
| ACCCTGAATCGTCAGCAATT+CGG | + | chr7_3:51212157-51212176 | Msa1108370:CDS | 45.0% | |
| GTAAGTCTGGAGGTGAACAA+GGG | + | chr7_3:51212180-51212199 | Msa1108370:CDS | 45.0% | |
| TTGAGAAACCAACACAGCTG+CGG | - | chr7_3:51212268-51212287 | None:intergenic | 45.0% | |
| ATTTCAGGCCAAGTTTGCGA+AGG | - | chr7_3:51212299-51212318 | None:intergenic | 45.0% | |
| TGGGTGAAGGCGATCATAAG+AGG | + | chr7_3:51210728-51210747 | Msa1108370:CDS | 50.0% | |
| GGGTGAAGGCGATCATAAGA+GGG | + | chr7_3:51210729-51210748 | Msa1108370:CDS | 50.0% | |
| GGTGAAGGCGATCATAAGAG+GGG | + | chr7_3:51210730-51210749 | Msa1108370:CDS | 50.0% | |
| ACTCCATGCTCATCATCCGA+AGG | - | chr7_3:51210781-51210800 | None:intergenic | 50.0% | |
| TTGATTGGAGGGGGGAGAAT+TGG | - | chr7_3:51210854-51210873 | None:intergenic | 50.0% | |
| TCGCGGTTTCTTGATTGGAG+GGG | - | chr7_3:51210864-51210883 | None:intergenic | 50.0% | |
| GATCGCGGTTTCTTGATTGG+AGG | - | chr7_3:51210866-51210885 | None:intergenic | 50.0% | |
| GGAGATCGCGGTTTCTTGAT+TGG | - | chr7_3:51210869-51210888 | None:intergenic | 50.0% | |
| ! | TGCAAGGGTATGCACGAGTT+GGG | - | chr7_3:51211272-51211291 | None:intergenic | 50.0% |
| ! | ATGCAAGGGTATGCACGAGT+TGG | - | chr7_3:51211273-51211292 | None:intergenic | 50.0% |
| CCCGAATTGCTGACGATTCA+GGG | - | chr7_3:51212161-51212180 | None:intergenic | 50.0% | |
| CCCTGAATCGTCAGCAATTC+GGG | + | chr7_3:51212158-51212177 | Msa1108370:CDS | 50.0% | |
| ACCCGAATTGCTGACGATTC+AGG | - | chr7_3:51212162-51212181 | None:intergenic | 50.0% | |
| GTCAGCAATTCGGGTAAGTC+TGG | + | chr7_3:51212167-51212186 | Msa1108370:CDS | 50.0% | |
| AGCAATTCGGGTAAGTCTGG+AGG | + | chr7_3:51212170-51212189 | Msa1108370:CDS | 50.0% | |
| GGTAAGTCTGGAGGTGAACA+AGG | + | chr7_3:51212179-51212198 | Msa1108370:CDS | 50.0% | |
| TGTTCCAACAGACAACGCGA+TGG | + | chr7_3:51212227-51212246 | Msa1108370:CDS | 50.0% | |
| TCTTCCATCGCGTTGTCTGT+TGG | - | chr7_3:51212234-51212253 | None:intergenic | 50.0% | |
| !! | GCAGCTGTGTTGGTTTCTCA+AGG | + | chr7_3:51212267-51212286 | Msa1108370:CDS | 50.0% |
| GGAGAACTCCTTCGCAAACT+TGG | + | chr7_3:51212288-51212307 | Msa1108370:CDS | 50.0% | |
| TGGGTGAAGGCGATCATAAG+AGG | + | chr7_3:51210728-51210747 | Msa1108370:CDS | 50.0% | |
| GGGTGAAGGCGATCATAAGA+GGG | + | chr7_3:51210729-51210748 | Msa1108370:CDS | 50.0% | |
| GGTGAAGGCGATCATAAGAG+GGG | + | chr7_3:51210730-51210749 | Msa1108370:CDS | 50.0% | |
| ACTCCATGCTCATCATCCGA+AGG | - | chr7_3:51210781-51210800 | None:intergenic | 50.0% | |
| TTGATTGGAGGGGGGAGAAT+TGG | - | chr7_3:51210854-51210873 | None:intergenic | 50.0% | |
| TCGCGGTTTCTTGATTGGAG+GGG | - | chr7_3:51210864-51210883 | None:intergenic | 50.0% | |
| GATCGCGGTTTCTTGATTGG+AGG | - | chr7_3:51210866-51210885 | None:intergenic | 50.0% | |
| GGAGATCGCGGTTTCTTGAT+TGG | - | chr7_3:51210869-51210888 | None:intergenic | 50.0% | |
| ! | TGCAAGGGTATGCACGAGTT+GGG | - | chr7_3:51211272-51211291 | None:intergenic | 50.0% |
| ! | ATGCAAGGGTATGCACGAGT+TGG | - | chr7_3:51211273-51211292 | None:intergenic | 50.0% |
| CCCGAATTGCTGACGATTCA+GGG | - | chr7_3:51212161-51212180 | None:intergenic | 50.0% | |
| CCCTGAATCGTCAGCAATTC+GGG | + | chr7_3:51212158-51212177 | Msa1108370:CDS | 50.0% | |
| ACCCGAATTGCTGACGATTC+AGG | - | chr7_3:51212162-51212181 | None:intergenic | 50.0% | |
| GTCAGCAATTCGGGTAAGTC+TGG | + | chr7_3:51212167-51212186 | Msa1108370:CDS | 50.0% | |
| AGCAATTCGGGTAAGTCTGG+AGG | + | chr7_3:51212170-51212189 | Msa1108370:CDS | 50.0% | |
| GGTAAGTCTGGAGGTGAACA+AGG | + | chr7_3:51212179-51212198 | Msa1108370:CDS | 50.0% | |
| TGTTCCAACAGACAACGCGA+TGG | + | chr7_3:51212227-51212246 | Msa1108370:CDS | 50.0% | |
| TCTTCCATCGCGTTGTCTGT+TGG | - | chr7_3:51212234-51212253 | None:intergenic | 50.0% | |
| !! | GCAGCTGTGTTGGTTTCTCA+AGG | + | chr7_3:51212267-51212286 | Msa1108370:CDS | 50.0% |
| GGAGAACTCCTTCGCAAACT+TGG | + | chr7_3:51212288-51212307 | Msa1108370:CDS | 50.0% | |
| GAGGGGGGAGAATTGGATTC+TGG | - | chr7_3:51210847-51210866 | None:intergenic | 55.0% | |
| GCGGTTTCTTGATTGGAGGG+GGG | - | chr7_3:51210862-51210881 | None:intergenic | 55.0% | |
| CGCGGTTTCTTGATTGGAGG+GGG | - | chr7_3:51210863-51210882 | None:intergenic | 55.0% | |
| ! | GCAAGGGTATGCACGAGTTG+GGG | - | chr7_3:51211271-51211290 | None:intergenic | 55.0% |
| GAGGGGGGAGAATTGGATTC+TGG | - | chr7_3:51210847-51210866 | None:intergenic | 55.0% | |
| GCGGTTTCTTGATTGGAGGG+GGG | - | chr7_3:51210862-51210881 | None:intergenic | 55.0% | |
| CGCGGTTTCTTGATTGGAGG+GGG | - | chr7_3:51210863-51210882 | None:intergenic | 55.0% | |
| ! | GCAAGGGTATGCACGAGTTG+GGG | - | chr7_3:51211271-51211290 | None:intergenic | 55.0% |
| TGCACACACCGCAGCTGTGT+TGG | + | chr7_3:51212257-51212276 | Msa1108370:CDS | 60.0% | |
| TGCACACACCGCAGCTGTGT+TGG | + | chr7_3:51212257-51212276 | Msa1108370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51210727 | 51212335 | 51210727 | ID=Msa1108370;Name=Msa1108370 |
| chr7_3 | mRNA | 51210727 | 51212335 | 51210727 | ID=Msa1108370-mRNA-1;Parent=Msa1108370;Name=Msa1108370-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|126 |
| chr7_3 | exon | 51210727 | 51210919 | 51210727 | ID=Msa1108370-mRNA-1:exon:10503;Parent=Msa1108370-mRNA-1 |
| chr7_3 | exon | 51212148 | 51212335 | 51212148 | ID=Msa1108370-mRNA-1:exon:10504;Parent=Msa1108370-mRNA-1 |
| chr7_3 | CDS | 51210727 | 51210919 | 51210727 | ID=Msa1108370-mRNA-1:cds;Parent=Msa1108370-mRNA-1 |
| chr7_3 | CDS | 51212148 | 51212335 | 51212148 | ID=Msa1108370-mRNA-1:cds;Parent=Msa1108370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
