AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0594330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594330 MtrunA17_Chr4g0013171 91.900 321 26 0 1 321 1 321 0.0 620
Msa0594330 MtrunA17_Chr4g0013181 91.900 321 26 0 1 321 33 353 0.0 590
Msa0594330 MtrunA17_Chr5g0432331 61.830 317 115 4 9 321 38 352 1.18e-138 396
Msa0594330 MtrunA17_Chr5g0432341 60.308 325 121 5 1 321 1 321 3.03e-136 389
Msa0594330 MtrunA17_Chr5g0432351 59.385 325 124 5 1 321 1 321 2.94e-135 387
Msa0594330 MtrunA17_Chr5g0432441 59.443 323 127 2 2 321 5 326 8.90e-132 378
Msa0594330 MtrunA17_Chr3g0106921 58.917 314 125 3 11 321 8 320 4.29e-127 366
Msa0594330 MtrunA17_Chr3g0114451 58.025 324 127 5 1 321 1 318 5.97e-125 360
Msa0594330 MtrunA17_Chr3g0129051 55.414 314 136 3 10 321 11 322 9.31e-123 355
Msa0594330 MtrunA17_Chr4g0013201 56.494 308 132 2 14 321 33 338 7.39e-122 353
Msa0594330 MtrunA17_Chr3g0107881 55.828 326 137 5 1 321 1 324 1.90e-121 352
Msa0594330 MtrunA17_Chr5g0438021 55.272 313 135 4 11 321 16 325 5.08e-121 350
Msa0594330 MtrunA17_Chr7g0244451 56.774 310 132 2 12 321 9 316 1.33e-118 344
Msa0594330 MtrunA17_Chr7g0244461 55.932 295 128 2 27 321 20 312 2.84e-118 343
Msa0594330 MtrunA17_Chr2g0320061 55.096 314 138 3 9 321 7 318 2.99e-118 343
Msa0594330 MtrunA17_Chr3g0129041 58.013 312 126 4 13 321 13 322 2.21e-117 341
Msa0594330 MtrunA17_Chr3g0106901 54.829 321 143 2 1 321 5 323 4.21e-116 338
Msa0594330 MtrunA17_Chr4g0043391 53.374 326 145 5 1 321 1 324 4.65e-116 338
Msa0594330 MtrunA17_Chr2g0320031 54.921 315 138 4 9 321 7 319 4.89e-116 338
Msa0594330 MtrunA17_Chr2g0320071 52.532 316 148 2 6 321 4 317 6.62e-116 337
Msa0594330 MtrunA17_Chr3g0129061 55.247 324 140 4 1 321 1 322 3.20e-115 335
Msa0594330 MtrunA17_Chr2g0320101 52.848 316 147 2 6 321 4 317 4.88e-115 335
Msa0594330 MtrunA17_Chr2g0320051 53.822 314 142 3 9 321 7 318 1.87e-114 333
Msa0594330 MtrunA17_Chr4g0038161 52.322 323 146 5 3 321 2 320 2.16e-114 333
Msa0594330 MtrunA17_Chr4g0038151 52.778 324 144 6 3 321 2 321 9.94e-114 332
Msa0594330 MtrunA17_Chr4g0038171 53.994 313 137 5 14 321 11 321 1.00e-113 332
Msa0594330 MtrunA17_Chr2g0320091 51.735 317 150 3 6 321 4 318 3.47e-112 328
Msa0594330 MtrunA17_Chr4g0013191 55.290 293 127 3 31 321 50 340 1.23e-111 327
Msa0594330 MtrunA17_Chr5g0404721 55.116 303 126 4 27 321 30 330 5.17e-111 325
Msa0594330 MtrunA17_Chr1g0213061 51.447 311 145 4 14 321 14 321 8.31e-109 320
Msa0594330 MtrunA17_Chr7g0224371 52.396 313 146 3 9 321 13 322 4.44e-108 317
Msa0594330 MtrunA17_Chr8g0372601 54.098 305 130 4 25 321 28 330 9.24e-108 317
Msa0594330 MtrunA17_Chr5g0432401 51.258 318 107 6 10 320 9 285 3.38e-104 306
Msa0594330 MtrunA17_Chr1g0155611 51.475 305 137 4 26 321 45 347 7.36e-102 303
Msa0594330 MtrunA17_Chr4g0070951 49.394 330 152 5 3 321 4 329 1.40e-99 296
Msa0594330 MtrunA17_Chr7g0258811 46.526 331 163 6 1 321 45 371 3.01e-99 297
Msa0594330 MtrunA17_Chr1g0175561 47.368 323 154 6 9 321 10 326 5.15e-98 292
Msa0594330 MtrunA17_Chr4g0068621 49.511 307 147 4 21 321 32 336 1.04e-97 291
Msa0594330 MtrunA17_Chr2g0291751 48.193 332 159 5 1 321 1 330 9.23e-97 290
Msa0594330 MtrunA17_Chr2g0292211 47.222 324 160 4 7 321 20 341 5.14e-96 288
Msa0594330 MtrunA17_Chr5g0402571 46.417 321 161 4 9 321 9 326 5.19e-96 287
Msa0594330 MtrunA17_Chr2g0292181 47.484 318 156 4 13 321 24 339 4.93e-95 286
Msa0594330 MtrunA17_Chr2g0292151 46.541 318 159 4 13 321 15 330 7.28e-95 285
Msa0594330 MtrunA17_Chr2g0299691 48.860 307 141 5 27 321 56 358 9.10e-95 285
Msa0594330 MtrunA17_Chr5g0400331 49.838 309 138 5 27 321 26 331 2.96e-94 283
Msa0594330 MtrunA17_Chr2g0292241 47.003 317 157 4 14 321 16 330 7.28e-94 282
Msa0594330 MtrunA17_Chr5g0402581 45.171 321 165 4 9 321 9 326 4.08e-93 280
Msa0594330 MtrunA17_Chr2g0292261 47.799 318 155 4 13 321 15 330 7.30e-93 280
Msa0594330 MtrunA17_Chr2g0292271 45.963 322 161 5 11 321 11 330 1.34e-92 279
Msa0594330 MtrunA17_Chr2g0292091 46.178 314 158 4 17 321 14 325 3.93e-92 278
Msa0594330 MtrunA17_Chr2g0292251 48.355 304 146 4 27 321 28 329 5.36e-92 278
Msa0594330 MtrunA17_Chr2g0292291 47.335 319 156 5 13 321 16 332 1.40e-91 276
Msa0594330 MtrunA17_Chr2g0292111 45.912 318 161 4 13 321 15 330 4.26e-91 275
Msa0594330 MtrunA17_Chr4g0013721 47.896 309 149 5 20 321 93 396 3.67e-89 272
Msa0594330 MtrunA17_Chr2g0292101 45.912 318 161 4 13 321 11 326 7.73e-88 267
Msa0594330 MtrunA17_Chr5g0421411 48.432 287 134 6 47 321 1 285 8.11e-86 259
Msa0594330 MtrunA17_Chr4g0013821 45.277 307 156 5 22 321 23 324 6.46e-85 259
Msa0594330 MtrunA17_Chr2g0322861 42.368 321 172 7 10 321 70 386 5.96e-83 256
Msa0594330 MtrunA17_Chr8g0371381 42.997 307 160 7 22 321 21 319 5.42e-80 246
Msa0594330 MtrunA17_Chr5g0405991 42.006 319 169 8 10 321 7 316 2.02e-79 244
Msa0594330 MtrunA17_Chr1g0204011 40.854 328 178 7 1 321 4 322 2.25e-79 244
Msa0594330 MtrunA17_Chr1g0194151 42.296 331 176 6 4 321 5 333 2.14e-78 242
Msa0594330 MtrunA17_Chr6g0477071 40.940 298 168 6 25 321 52 342 2.15e-77 240
Msa0594330 MtrunA17_Chr2g0279041 41.284 327 173 7 7 321 6 325 3.26e-77 239
Msa0594330 MtrunA17_Chr1g0157051 41.824 318 172 7 9 319 7 318 3.54e-77 238
Msa0594330 MtrunA17_Chr4g0024121 38.906 329 188 6 1 321 3 326 1.45e-76 237
Msa0594330 MtrunA17_Chr1g0194271 42.183 339 172 7 4 321 5 340 3.07e-76 237
Msa0594330 MtrunA17_Chr1g0148021 41.390 331 181 7 1 321 1 328 1.23e-75 235
Msa0594330 MtrunA17_Chr3g0128061 39.873 316 180 4 14 321 13 326 2.33e-75 234
Msa0594330 MtrunA17_Chr7g0254231 41.554 296 166 5 27 321 22 311 3.68e-75 233
Msa0594330 MtrunA17_Chr7g0225221 39.937 318 183 6 9 321 6 320 9.58e-75 232
Msa0594330 MtrunA17_Chr1g0188431 41.554 296 165 6 27 321 39 327 9.95e-75 233
Msa0594330 MtrunA17_Chr4g0063671 40.938 320 170 6 14 321 8 320 3.75e-72 226
Msa0594330 MtrunA17_Chr3g0114461 56.614 189 80 2 134 321 5 192 3.18e-70 216
Msa0594330 MtrunA17_Chr1g0164891 41.060 302 165 6 31 321 93 392 2.87e-69 221
Msa0594330 MtrunA17_Chr4g0046131 41.265 332 172 9 7 317 13 342 5.73e-69 218
Msa0594330 MtrunA17_Chr6g0460711 36.792 318 185 7 9 321 8 314 7.54e-69 217
Msa0594330 MtrunA17_Chr4g0053871 38.820 322 190 5 1 317 1 320 1.25e-68 217
Msa0594330 MtrunA17_Chr4g0072091 41.447 304 165 6 27 321 24 323 1.31e-68 217
Msa0594330 MtrunA17_Chr1g0197411 38.906 329 186 7 6 321 4 330 3.22e-68 216
Msa0594330 MtrunA17_Chr4g0076211 37.647 340 177 9 6 321 5 333 3.65e-68 216
Msa0594330 MtrunA17_Chr7g0268501 37.963 324 187 7 5 321 4 320 5.30e-68 215
Msa0594330 MtrunA17_Chr7g0268521 37.963 324 187 7 5 321 4 320 5.30e-68 215
Msa0594330 MtrunA17_Chr5g0401431 36.957 322 184 6 6 317 13 325 6.20e-68 215
Msa0594330 MtrunA17_Chr7g0254201 37.294 303 178 5 24 321 17 312 1.35e-67 214
Msa0594330 MtrunA17_Chr2g0296621 41.914 303 157 8 27 321 50 341 7.54e-67 213
Msa0594330 MtrunA17_Chr2g0278671 40.584 308 166 6 25 321 22 323 4.14e-66 210
Msa0594330 MtrunA17_Chr6g0467161 38.926 298 175 6 26 321 44 336 2.12e-65 209
Msa0594330 MtrunA17_Chr6g0451571 36.842 323 191 7 7 321 17 334 1.08e-64 207
Msa0594330 MtrunA17_Chr8g0364291 35.802 324 197 5 7 321 3 324 2.56e-62 201
Msa0594330 MtrunA17_Chr2g0329641 37.931 319 179 6 15 321 24 335 2.79e-62 201
Msa0594330 MtrunA17_Chr2g0316791 38.922 334 162 8 25 319 74 404 5.69e-62 202
Msa0594330 MtrunA17_Chr6g0467121 36.076 316 195 6 7 321 54 363 8.05e-61 199
Msa0594330 MtrunA17_Chr6g0467251 37.374 297 180 5 27 321 36 328 1.75e-60 196
Msa0594330 MtrunA17_Chr2g0316481 38.323 334 164 8 25 319 74 404 2.74e-60 198
Msa0594330 MtrunA17_Chr2g0316831 38.323 334 164 8 25 319 110 440 3.86e-60 198
Msa0594330 MtrunA17_Chr2g0316191 38.209 335 164 8 25 319 74 405 1.22e-59 196
Msa0594330 MtrunA17_Chr2g0279061 43.130 262 131 6 71 321 12 266 2.22e-59 191
Msa0594330 MtrunA17_Chr4g0075241 34.884 301 188 4 27 321 29 327 3.42e-58 190
Msa0594330 MtrunA17_Chr2g0311251 37.313 335 167 9 25 320 9 339 6.31e-55 182
Msa0594330 MtrunA17_Chr3g0136751 35.294 323 194 4 8 321 6 322 7.84e-54 179
Msa0594330 MtrunA17_Chr2g0311241 32.759 406 182 11 2 320 28 429 9.67e-53 179
Msa0594330 MtrunA17_Chr4g0074851 34.551 301 189 5 26 321 31 328 4.73e-52 174
Msa0594330 MtrunA17_Chr1g0181511 35.762 302 186 5 25 321 25 323 5.30e-52 174
Msa0594330 MtrunA17_Chr1g0181431 34.768 302 189 5 25 321 25 323 1.79e-51 172
Msa0594330 MtrunA17_Chr1g0181481 35.762 302 186 5 25 321 25 323 4.68e-51 171
Msa0594330 MtrunA17_Chr5g0413051 32.248 307 194 6 27 321 73 377 9.99e-50 169
Msa0594330 MtrunA17_Chr2g0292281 45.755 212 93 5 120 321 17 216 6.94e-48 160
Msa0594330 MtrunA17_Chr5g0432321 61.864 118 43 2 149 266 17 132 4.53e-43 145
Msa0594330 MtrunA17_Chr3g0114491 64.545 110 38 1 27 136 18 126 8.99e-41 139
Msa0594330 MtrunA17_Chr2g0316141 37.918 269 142 8 73 319 11 276 2.77e-39 139
Msa0594330 MtrunA17_Chr2g0316181 37.918 269 142 8 73 319 11 276 2.77e-39 139
Msa0594330 MtrunA17_Chr4g0004591 28.037 321 162 6 27 320 77 355 4.69e-38 138
Msa0594330 MtrunA17_Chr2g0316811 33.681 288 134 9 25 258 48 332 3.10e-36 133
Msa0594330 MtrunA17_Chr3g0104101 43.262 141 68 4 193 321 9 149 7.03e-27 103
Msa0594330 MtrunA17_Chr5g0432361 49.462 93 44 2 230 320 17 108 9.61e-24 93.6
Msa0594330 MtrunA17_Chr1g0181501 31.217 189 123 4 138 321 3 189 1.74e-21 90.1
Msa0594330 MtrunA17_Chr2g0316771 31.818 176 83 3 179 317 7 182 3.07e-19 84.0
Msa0594330 MtrunA17_Chr6g0468731 56.338 71 26 3 66 136 22 87 3.70e-17 75.5
Msa0594330 MtrunA17_Chr1g0181491 41.071 112 61 4 25 135 10 117 1.19e-16 75.9
Msa0594330 MtrunA17_Chr4g0013811 51.351 74 35 1 139 212 6 78 2.06e-16 73.2
Msa0594330 MtrunA17_Chr7g0254181 38.318 107 60 3 89 195 22 122 4.21e-16 74.3
Msa0594330 MtrunA17_Chr1g0196191 56.716 67 27 2 69 135 27 91 2.36e-15 72.4
Msa0594330 MtrunA17_Chr3g0137751 27.203 261 119 10 59 302 106 312 1.74e-14 73.2
Msa0594330 MtrunA17_Chr4g0037131 30.159 189 95 5 119 303 88 243 7.89e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594330 AT5G05340.1 62.626 297 107 3 27 321 30 324 6.75e-130 373
Msa0594330 AT5G58400.1 52.351 319 149 2 5 321 8 325 3.12e-113 331
Msa0594330 AT1G14550.1 52.978 319 145 4 7 321 4 321 3.74e-113 331
Msa0594330 AT5G58390.1 55.161 310 136 2 14 321 8 316 2.02e-111 326
Msa0594330 AT4G36430.1 53.465 303 131 4 27 321 30 330 3.24e-109 321
Msa0594330 AT2G18150.1 53.135 303 132 4 27 321 36 336 2.87e-108 319
Msa0594330 AT2G18140.1 53.135 303 132 4 27 321 35 335 4.62e-107 316
Msa0594330 AT1G44970.1 50.955 314 143 4 17 321 35 346 1.02e-106 315
Msa0594330 AT5G06720.1 50.158 317 147 4 14 321 19 333 4.31e-106 313
Msa0594330 AT1G14540.1 50.473 317 153 4 7 321 1 315 1.27e-105 311
Msa0594330 AT3G50990.1 50.645 310 143 4 20 321 34 341 2.85e-104 309
Msa0594330 AT5G66390.1 49.530 319 151 4 11 321 17 333 4.11e-103 306
Msa0594330 AT3G32980.1 49.020 306 143 5 27 321 31 334 5.78e-97 291
Msa0594330 AT5G06730.1 45.741 317 161 4 14 321 20 334 1.59e-96 290
Msa0594330 AT3G49110.1 47.950 317 152 5 16 321 22 336 6.44e-96 288
Msa0594330 AT3G49120.1 47.923 313 150 5 20 321 25 335 2.59e-95 286
Msa0594330 AT4G08770.1 47.436 312 151 5 21 321 18 327 7.99e-94 282
Msa0594330 AT4G08780.1 46.795 312 153 5 21 321 18 327 1.19e-93 282
Msa0594330 AT2G35380.1 46.970 330 156 5 9 321 8 335 7.02e-92 277
Msa0594330 AT1G68850.1 44.179 335 167 8 5 321 3 335 4.08e-91 275
Msa0594330 AT1G49570.1 47.855 303 146 5 25 317 46 346 2.23e-90 274
Msa0594330 AT4G16270.1 48.322 298 142 5 32 321 55 348 3.76e-90 273
Msa0594330 AT2G38380.1 46.130 323 157 7 13 321 14 333 6.26e-90 273
Msa0594330 AT2G38390.1 45.513 312 158 5 20 321 24 333 4.41e-89 270
Msa0594330 AT5G19890.1 46.547 333 153 9 1 321 8 327 2.84e-88 268
Msa0594330 AT2G22420.1 43.827 324 168 6 7 321 1 319 2.20e-85 260
Msa0594330 AT5G19880.1 45.603 307 153 5 27 321 25 329 6.31e-85 259
Msa0594330 AT5G51890.1 42.901 324 166 9 7 321 9 322 2.12e-80 247
Msa0594330 AT1G71695.1 43.289 298 164 4 27 321 44 339 3.09e-79 245
Msa0594330 AT5G42180.1 42.173 313 167 6 14 319 10 315 5.06e-79 243
Msa0594330 AT3G01190.1 42.122 311 165 7 19 321 18 321 8.09e-79 243
Msa0594330 AT5G15180.1 40.867 323 176 8 9 321 12 329 9.04e-76 236
Msa0594330 AT5G17820.1 39.812 319 173 6 10 321 7 313 9.58e-76 235
Msa0594330 AT3G03670.1 40.252 318 174 6 14 321 10 321 3.00e-75 234
Msa0594330 AT3G21770.1 40.764 314 173 7 16 320 18 327 4.25e-75 234
Msa0594330 AT5G64120.1 41.751 297 160 5 31 321 39 328 9.28e-75 233
Msa0594330 AT5G17820.2 39.812 319 173 6 10 321 60 366 9.93e-75 234
Msa0594330 AT4G11290.1 39.450 327 185 7 5 321 3 326 2.39e-74 232
Msa0594330 AT1G05240.1 41.967 305 162 7 27 321 26 325 1.16e-73 230
Msa0594330 AT1G05250.1 41.967 305 162 7 27 321 26 325 1.16e-73 230
Msa0594330 AT1G05260.1 40.635 315 174 7 16 321 15 325 1.49e-73 230
Msa0594330 AT2G41480.1 40.729 329 176 6 5 321 7 328 1.87e-73 229
Msa0594330 AT4G33420.1 41.401 314 173 7 9 321 22 325 1.91e-71 224
Msa0594330 AT4G33420.2 41.401 314 173 7 9 321 69 372 6.92e-71 224
Msa0594330 AT5G40150.1 40.909 308 176 5 18 321 23 328 2.72e-70 221
Msa0594330 AT4G26010.1 38.462 312 180 7 8 318 6 306 2.46e-69 218
Msa0594330 AT4G26010.2 38.462 312 180 7 8 318 34 334 4.17e-69 219
Msa0594330 AT5G67400.1 38.413 315 182 5 13 317 13 325 6.62e-69 218
Msa0594330 AT3G28200.1 40.594 303 175 5 22 321 16 316 1.20e-68 217
Msa0594330 AT2G18980.1 38.671 331 185 7 1 321 1 323 1.24e-67 214
Msa0594330 AT2G35380.2 48.594 249 113 4 86 321 1 247 2.29e-67 211
Msa0594330 AT5G39580.1 38.415 328 186 7 1 321 1 319 3.74e-67 213
Msa0594330 AT5G47000.1 38.318 321 189 6 7 321 13 330 1.89e-65 209
Msa0594330 AT5G14130.1 36.760 321 191 6 9 321 14 330 2.93e-65 209
Msa0594330 AT1G34510.1 37.338 308 184 6 15 321 10 309 3.35e-65 208
Msa0594330 AT1G30870.1 40.850 306 159 8 27 321 51 345 4.16e-65 209
Msa0594330 AT5G14130.2 36.760 321 191 6 9 321 55 371 7.20e-65 209
Msa0594330 AT4G30170.1 39.414 307 170 7 25 321 25 325 1.38e-64 207
Msa0594330 AT4G37530.1 39.073 302 174 4 25 317 25 325 1.54e-64 207
Msa0594330 AT3G49960.1 37.261 314 185 5 14 317 14 325 3.28e-64 206
Msa0594330 AT5G64110.1 40.308 325 171 8 10 321 16 330 9.67e-64 205
Msa0594330 AT4G17690.1 39.610 308 176 6 22 321 17 322 2.62e-63 204
Msa0594330 AT4G33870.1 34.615 338 176 6 25 320 66 400 2.84e-63 206
Msa0594330 AT5G64100.1 39.934 303 162 7 29 321 39 331 5.74e-63 203
Msa0594330 AT1G24110.1 38.614 303 176 5 27 321 22 322 5.55e-62 200
Msa0594330 AT2G39040.1 40.453 309 166 10 27 321 46 350 3.36e-61 199
Msa0594330 AT4G37520.1 37.417 302 179 4 25 317 25 325 9.36e-61 197
Msa0594330 AT4G37520.2 37.086 302 177 5 25 317 25 322 5.21e-59 192
Msa0594330 AT2G34060.1 35.693 339 194 8 1 318 8 343 3.64e-58 191
Msa0594330 AT4G31760.1 34.985 323 195 4 8 321 10 326 5.12e-58 190
Msa0594330 AT4G37530.2 41.176 255 140 4 25 270 25 278 3.36e-57 186
Msa0594330 AT4G25980.1 37.785 307 173 6 27 321 26 326 1.02e-56 186
Msa0594330 AT5G22410.1 33.025 324 196 10 7 318 8 322 1.24e-56 186
Msa0594330 AT5G24070.1 36.170 329 188 8 7 321 15 335 1.74e-56 186
Msa0594330 AT1G77100.1 39.739 307 170 10 24 321 19 319 4.12e-55 182
Msa0594330 AT2G43480.1 35.583 326 188 8 10 321 18 335 7.64e-55 182
Msa0594330 AT4G21960.1 33.951 324 200 6 9 321 7 327 1.02e-54 181
Msa0594330 AT2G37130.1 36.545 301 182 6 27 321 30 327 1.23e-54 181
Msa0594330 AT2G37130.2 36.577 298 180 6 30 321 2 296 1.27e-54 180
Msa0594330 AT2G24800.1 34.426 305 184 5 27 321 31 329 5.83e-52 174
Msa0594330 AT3G17070.1 34.713 314 184 8 22 321 33 339 6.80e-47 161
Msa0594330 AT5G39580.2 39.151 212 116 6 5 216 5 203 1.07e-39 140
Msa0594330 AT4G25980.2 44.253 174 91 4 27 200 71 238 5.80e-38 137
Msa0594330 AT3G17070.2 34.457 267 153 9 69 321 18 276 1.30e-34 127
Msa0594330 AT2G24800.2 38.021 192 107 6 27 217 31 211 1.69e-32 121
Msa0594330 AT4G32320.1 29.615 260 116 10 58 302 114 321 1.01e-15 77.0
Msa0594330 AT1G77490.2 25.385 260 151 9 61 303 106 339 1.26e-12 68.6
Msa0594330 AT1G77490.1 25.385 260 151 9 61 303 106 339 1.71e-12 68.2

Find 60 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGCTGAGTTTAAATT+TGG 0.120556 4_2:+21765827 None:intergenic
CAGTATCTTGATAAATTAAT+TGG 0.213697 4_2:+21764793 None:intergenic
GTTTGAGTCTCCGCCTTCTC+TGG 0.235917 4_2:+21765066 None:intergenic
TGAAGTGGTTGATGAGATTA+AGG 0.263243 4_2:-21765801 Msa0594330:CDS
CTAATAGTGCTCAAAGCATT+AGG 0.267809 4_2:+21766967 None:intergenic
GGAAATATTAAGCCACTTAC+TGG 0.284799 4_2:-21764851 Msa0594330:CDS
AAAGACCTCGTTGCCCTATC+TGG 0.286567 4_2:-21765193 Msa0594330:CDS
ACCCTCATGGAATGTGAAAC+TGG 0.324769 4_2:-21765332 Msa0594330:CDS
TGCAAAATCTATGATTAAGA+TGG 0.337659 4_2:-21764873 Msa0594330:CDS
AAGTCGTGCCGATGCAGATT+CGG 0.343313 4_2:-21765287 Msa0594330:CDS
TTGTTGAATGGTGGTTATAC+TGG 0.357733 4_2:-21764947 Msa0594330:CDS
GTGAAGTTCGTTGCAATTGC+AGG 0.359490 4_2:-21764820 Msa0594330:CDS
CTATCTGGAGCACACACTAT+TGG 0.391267 4_2:-21765178 Msa0594330:CDS
CAATAGTGTGTGCTCCAGAT+AGG 0.400931 4_2:+21765179 None:intergenic
AGTCGTGCCGATGCAGATTC+GGG 0.407331 4_2:-21765286 Msa0594330:CDS
TAATAGTGCTCAAAGCATTA+GGG 0.431156 4_2:+21766968 None:intergenic
AGAAAGACTGAATGATGGTC+CGG 0.452732 4_2:+21765255 None:intergenic
TGTTTCTTGTGCAGACATAT+TGG 0.453461 4_2:-21765747 Msa0594330:CDS
TTTGAGTCTCCGCCTTCTCT+GGG 0.468683 4_2:+21765067 None:intergenic
GCAAAATCTATGATTAAGAT+GGG 0.472740 4_2:-21764872 Msa0594330:CDS
TGTTGTTGTCATTGTAGATT+CGG 0.474841 4_2:+21765128 None:intergenic
TCACCTTGTCTCCCAGTAAG+TGG 0.477158 4_2:+21764839 None:intergenic
GAGCATTGGTTAGAAAATAT+AGG 0.478103 4_2:-21764925 Msa0594330:CDS
ATGTCTGCACAAGAAACAAC+TGG 0.493198 4_2:+21765752 None:intergenic
CCCAGTTTCACATTCCATGA+GGG 0.508575 4_2:+21765331 None:intergenic
GAAAGACTGAATGATGGTCC+GGG 0.528311 4_2:+21765256 None:intergenic
TCTAGACTCTACACCTTCGA+TGG 0.530212 4_2:-21765870 Msa0594330:CDS
GGTGTGATTCAGGGTTGTGA+TGG 0.531565 4_2:-21765902 Msa0594330:intron
GCAGATTCGGGCAATATCCC+CGG 0.532728 4_2:-21765274 Msa0594330:CDS
CAAAATGTTTGTCCCAGAGA+AGG 0.543913 4_2:-21765079 Msa0594330:CDS
AATAGTGTGTGCTCCAGATA+GGG 0.548473 4_2:+21765180 None:intergenic
TCTGATCAAGAATTGTTGAA+TGG 0.552781 4_2:-21764959 Msa0594330:CDS
CATATTGGCTGTAGCTGCAA+GGG 0.555502 4_2:-21765732 Msa0594330:CDS
CCCTCATGGAATGTGAAACT+GGG 0.556921 4_2:-21765331 Msa0594330:CDS
TGCAGTTAGGAGGACCCTCA+TGG 0.570814 4_2:-21765345 Msa0594330:intron
ACATATTGGCTGTAGCTGCA+AGG 0.582067 4_2:-21765733 Msa0594330:CDS
TCCCAGTTTCACATTCCATG+AGG 0.588053 4_2:+21765330 None:intergenic
CCAAATTTAAACTCAGCTAG+AGG 0.590911 4_2:-21765827 Msa0594330:CDS
TATATATGGATGCAGTTAGG+AGG 0.592979 4_2:-21765355 Msa0594330:intron
TGCAAGGGACTCCGTCGTTG+CGG 0.596435 4_2:-21765717 Msa0594330:intron
ATTATTACTAACCGCAACGA+CGG 0.600835 4_2:+21765706 None:intergenic
GAGCTGCTAACACTATTGCA+TGG 0.601264 4_2:+21767043 None:intergenic
GATATTGCCCGAATCTGCAT+CGG 0.609450 4_2:+21765279 None:intergenic
TACACCGGCAAAATTTGATG+TGG 0.613189 4_2:-21765023 Msa0594330:CDS
GAAATATTAAGCCACTTACT+GGG 0.616763 4_2:-21764850 Msa0594330:CDS
GATCAAGAATTGTTGAATGG+TGG 0.618707 4_2:-21764956 Msa0594330:CDS
GAAGCTGTTGATAAAGCATG+TGG 0.618722 4_2:-21765779 Msa0594330:CDS
AGTTGAGAAAGACTGAATGA+TGG 0.626761 4_2:+21765250 None:intergenic
GTAGTAAAGAAGCACCCATA+CGG 0.628918 4_2:+21766911 None:intergenic
CTCAGCTAGAGGATTTGAAG+TGG 0.629018 4_2:-21765816 Msa0594330:CDS
GTTCAAAGAGAGAACCGTAT+GGG 0.629967 4_2:-21766925 Msa0594330:CDS
AATGTTTGTCCCAGAGAAGG+CGG 0.632543 4_2:-21765076 Msa0594330:CDS
AGTTCAAAGAGAGAACCGTA+TGG 0.633955 4_2:-21766926 Msa0594330:CDS
TGGTGGTTATACTGGAGCAT+TGG 0.634930 4_2:-21764939 Msa0594330:CDS
AGCTCTCGACAGTGTTACAC+CGG 0.659336 4_2:-21765038 Msa0594330:CDS
AAGCCACTTACTGGGAGACA+AGG 0.665399 4_2:-21764842 Msa0594330:CDS
AAAGACTGAATGATGGTCCG+GGG 0.668454 4_2:+21765257 None:intergenic
TAACACTGTCGAGAGCTGCA+AGG 0.690785 4_2:+21765044 None:intergenic
CATTGAGAAATACCTATGTG+AGG 0.711191 4_2:+21767071 None:intergenic
GTGCTCCAGATAGGGCAACG+AGG 0.748414 4_2:+21765188 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATATAAATTTTTTTG+AGG + chr4_2:21765070-21765089 None:intergenic 10.0%
!!! TAATTAGACTAATTTATTTT+AGG - chr4_2:21765367-21765386 Msa0594330:intron 10.0%
!!! AATTAGACTAATTTATTTTA+GGG - chr4_2:21765368-21765387 Msa0594330:intron 10.0%
!! GAAAAAATCATAAAAAATTT+CGG - chr4_2:21765640-21765659 Msa0594330:intron 10.0%
!! AAAAAATCGTAAAAAAAAAA+TGG - chr4_2:21765697-21765716 Msa0594330:intron 10.0%
!! AAAAATCGTAAAAAAAAAAT+GGG - chr4_2:21765698-21765717 Msa0594330:intron 10.0%
!! TTGAATATATCAAAATTAAA+AGG - chr4_2:21766384-21766403 Msa0594330:intron 10.0%
!! TTGAAATTTACAATTATATA+TGG - chr4_2:21766514-21766533 Msa0594330:intron 10.0%
!!! TTTTGATATAAATTTTTTTG+AGG + chr4_2:21765070-21765089 None:intergenic 10.0%
!!! TAATTAGACTAATTTATTTT+AGG - chr4_2:21765367-21765386 Msa0594330:intron 10.0%
!!! AATTAGACTAATTTATTTTA+GGG - chr4_2:21765368-21765387 Msa0594330:intron 10.0%
!! GAAAAAATCATAAAAAATTT+CGG - chr4_2:21765640-21765659 Msa0594330:intron 10.0%
!! AAAAAATCGTAAAAAAAAAA+TGG - chr4_2:21765697-21765716 Msa0594330:intron 10.0%
!! AAAAATCGTAAAAAAAAAAT+GGG - chr4_2:21765698-21765717 Msa0594330:intron 10.0%
!! TTGAATATATCAAAATTAAA+AGG - chr4_2:21766384-21766403 Msa0594330:intron 10.0%
!! TTGAAATTTACAATTATATA+TGG - chr4_2:21766514-21766533 Msa0594330:intron 10.0%
!! AATAATATTATGTATACACA+TGG + chr4_2:21765046-21765065 None:intergenic 15.0%
!! CTACAAGAAATATTTAAATT+AGG - chr4_2:21765114-21765133 Msa0594330:CDS 15.0%
!!! TTTTTTTTACGATTTTTTCT+CGG + chr4_2:21765695-21765714 None:intergenic 15.0%
!! AAAATCGTAAAAAAAAAATG+GGG - chr4_2:21765699-21765718 Msa0594330:intron 15.0%
!!! TTATTTTATTTTGAACTAGT+CGG - chr4_2:21766245-21766264 Msa0594330:intron 15.0%
!! AAATAAAGTTAATAAAAGGA+AGG - chr4_2:21766328-21766347 Msa0594330:intron 15.0%
!!! AATTTTGATATATTCAAAGT+TGG + chr4_2:21766381-21766400 None:intergenic 15.0%
!! ATATATCAAAATTAAAAGGA+AGG - chr4_2:21766388-21766407 Msa0594330:intron 15.0%
!! AATAATATTATGTATACACA+TGG + chr4_2:21765046-21765065 None:intergenic 15.0%
!! CTACAAGAAATATTTAAATT+AGG - chr4_2:21765114-21765133 Msa0594330:CDS 15.0%
!!! TTTTTTTTACGATTTTTTCT+CGG + chr4_2:21765695-21765714 None:intergenic 15.0%
!! AAAATCGTAAAAAAAAAATG+GGG - chr4_2:21765699-21765718 Msa0594330:intron 15.0%
!!! TTATTTTATTTTGAACTAGT+CGG - chr4_2:21766245-21766264 Msa0594330:intron 15.0%
!! AAATAAAGTTAATAAAAGGA+AGG - chr4_2:21766328-21766347 Msa0594330:intron 15.0%
!!! AATTTTGATATATTCAAAGT+TGG + chr4_2:21766381-21766400 None:intergenic 15.0%
!! ATATATCAAAATTAAAAGGA+AGG - chr4_2:21766388-21766407 Msa0594330:intron 15.0%
!!! AATTTTAGTTACTTTTCGAA+AGG - chr4_2:21765267-21765286 Msa0594330:CDS 20.0%
!! AATTTATAAACTGATTAGAC+TGG - chr4_2:21765315-21765334 Msa0594330:CDS 20.0%
!!! GGAAAAAAAAAGTTTTTTGA+AGG - chr4_2:21765730-21765749 Msa0594330:CDS 20.0%
!! AAAACAAAAAAAAATAAGCC+AGG - chr4_2:21765755-21765774 Msa0594330:CDS 20.0%
!! AAACAAAAAAAAATAAGCCA+GGG - chr4_2:21765756-21765775 Msa0594330:CDS 20.0%
!!! AAAAAAAAAGGATTAGTGAT+TGG - chr4_2:21765881-21765900 Msa0594330:CDS 20.0%
!!! ATCAAAAATTTTGAAAACCA+GGG - chr4_2:21766657-21766676 Msa0594330:intron 20.0%
!!! AATTTTAGTTACTTTTCGAA+AGG - chr4_2:21765267-21765286 Msa0594330:CDS 20.0%
!! AATTTATAAACTGATTAGAC+TGG - chr4_2:21765315-21765334 Msa0594330:CDS 20.0%
!!! GGAAAAAAAAAGTTTTTTGA+AGG - chr4_2:21765730-21765749 Msa0594330:CDS 20.0%
!! AAAACAAAAAAAAATAAGCC+AGG - chr4_2:21765755-21765774 Msa0594330:CDS 20.0%
!! AAACAAAAAAAAATAAGCCA+GGG - chr4_2:21765756-21765775 Msa0594330:CDS 20.0%
!!! AAAAAAAAAGGATTAGTGAT+TGG - chr4_2:21765881-21765900 Msa0594330:CDS 20.0%
!!! ATCAAAAATTTTGAAAACCA+GGG - chr4_2:21766657-21766676 Msa0594330:intron 20.0%
! TTAACTGATTAAACTTTGCA+GGG + chr4_2:21765469-21765488 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr4_2:21765470-21765489 None:intergenic 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG + chr4_2:21765569-21765588 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG + chr4_2:21765570-21765589 None:intergenic 25.0%
! AAAAAAAATGGGGAAAAATC+TGG - chr4_2:21765709-21765728 Msa0594330:intron 25.0%
! AACAAAAAAAAATAAGCCAG+GGG - chr4_2:21765757-21765776 Msa0594330:CDS 25.0%
! TTTAACTGATTAAAGTTTGC+AGG - chr4_2:21765855-21765874 Msa0594330:CDS 25.0%
! TTAACTGATTAAAGTTTGCA+GGG - chr4_2:21765856-21765875 Msa0594330:CDS 25.0%
! ATTAAATTATGGTGTGATTC+AGG - chr4_2:21765971-21765990 Msa0594330:intron 25.0%
! TTAAATTATGGTGTGATTCA+GGG - chr4_2:21765972-21765991 Msa0594330:intron 25.0%
! TAAAACAGAAATTGTTAGCA+TGG - chr4_2:21766274-21766293 Msa0594330:intron 25.0%
! TAAAGTTAATAAAAGGAAGG+TGG - chr4_2:21766331-21766350 Msa0594330:intron 25.0%
! TTTGATATATTCAAAGTTGG+TGG + chr4_2:21766378-21766397 None:intergenic 25.0%
! AATTATATATGGATGCAGTT+AGG - chr4_2:21766525-21766544 Msa0594330:intron 25.0%
!!! CATCAAAAATTTTGAAAACC+AGG - chr4_2:21766656-21766675 Msa0594330:intron 25.0%
! CGCAATTGATTAAAAAGAAA+GGG - chr4_2:21766892-21766911 Msa0594330:CDS 25.0%
! TGCAAAATCTATGATTAAGA+TGG - chr4_2:21767010-21767029 Msa0594330:CDS 25.0%
! GCAAAATCTATGATTAAGAT+GGG - chr4_2:21767011-21767030 Msa0594330:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr4_2:21765469-21765488 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr4_2:21765470-21765489 None:intergenic 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG + chr4_2:21765569-21765588 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG + chr4_2:21765570-21765589 None:intergenic 25.0%
! AAAAAAAATGGGGAAAAATC+TGG - chr4_2:21765709-21765728 Msa0594330:intron 25.0%
! AACAAAAAAAAATAAGCCAG+GGG - chr4_2:21765757-21765776 Msa0594330:CDS 25.0%
! TTTAACTGATTAAAGTTTGC+AGG - chr4_2:21765855-21765874 Msa0594330:CDS 25.0%
! TTAACTGATTAAAGTTTGCA+GGG - chr4_2:21765856-21765875 Msa0594330:CDS 25.0%
! ATTAAATTATGGTGTGATTC+AGG - chr4_2:21765971-21765990 Msa0594330:intron 25.0%
! TTAAATTATGGTGTGATTCA+GGG - chr4_2:21765972-21765991 Msa0594330:intron 25.0%
! TAAAACAGAAATTGTTAGCA+TGG - chr4_2:21766274-21766293 Msa0594330:intron 25.0%
! TAAAGTTAATAAAAGGAAGG+TGG - chr4_2:21766331-21766350 Msa0594330:intron 25.0%
! TTTGATATATTCAAAGTTGG+TGG + chr4_2:21766378-21766397 None:intergenic 25.0%
! AATTATATATGGATGCAGTT+AGG - chr4_2:21766525-21766544 Msa0594330:intron 25.0%
!!! CATCAAAAATTTTGAAAACC+AGG - chr4_2:21766656-21766675 Msa0594330:intron 25.0%
! CGCAATTGATTAAAAAGAAA+GGG - chr4_2:21766892-21766911 Msa0594330:CDS 25.0%
! TGCAAAATCTATGATTAAGA+TGG - chr4_2:21767010-21767029 Msa0594330:CDS 25.0%
! GCAAAATCTATGATTAAGAT+GGG - chr4_2:21767011-21767030 Msa0594330:CDS 25.0%
! TAATAGTGCTCAAAGCATTA+GGG + chr4_2:21764918-21764937 None:intergenic 30.0%
AAAAAAGATTAGCGATTGCA+GGG + chr4_2:21765442-21765461 None:intergenic 30.0%
AAAAAAAGATTAGCGATTGC+AGG + chr4_2:21765443-21765462 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr4_2:21765468-21765487 None:intergenic 30.0%
AAGGAAAAAAAATAAGCCAG+GGG + chr4_2:21765568-21765587 None:intergenic 30.0%
TAACTGATTAAAGTTTGCAG+GGG - chr4_2:21765857-21765876 Msa0594330:CDS 30.0%
! AAAAAAGGATTAGTGATTGG+AGG - chr4_2:21765884-21765903 Msa0594330:CDS 30.0%
! AAAAAGGATTAGTGATTGGA+GGG - chr4_2:21765885-21765904 Msa0594330:CDS 30.0%
TGTTGTTGTCATTGTAGATT+CGG + chr4_2:21766758-21766777 None:intergenic 30.0%
GCGCAATTGATTAAAAAGAA+AGG - chr4_2:21766891-21766910 Msa0594330:CDS 30.0%
TCTGATCAAGAATTGTTGAA+TGG - chr4_2:21766924-21766943 Msa0594330:CDS 30.0%
!! GAGCATTGGTTAGAAAATAT+AGG - chr4_2:21766958-21766977 Msa0594330:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG - chr4_2:21767033-21767052 Msa0594330:CDS 30.0%
! TAATAGTGCTCAAAGCATTA+GGG + chr4_2:21764918-21764937 None:intergenic 30.0%
AAAAAAGATTAGCGATTGCA+GGG + chr4_2:21765442-21765461 None:intergenic 30.0%
AAAAAAAGATTAGCGATTGC+AGG + chr4_2:21765443-21765462 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr4_2:21765468-21765487 None:intergenic 30.0%
AAGGAAAAAAAATAAGCCAG+GGG + chr4_2:21765568-21765587 None:intergenic 30.0%
TAACTGATTAAAGTTTGCAG+GGG - chr4_2:21765857-21765876 Msa0594330:CDS 30.0%
! AAAAAAGGATTAGTGATTGG+AGG - chr4_2:21765884-21765903 Msa0594330:CDS 30.0%
! AAAAAGGATTAGTGATTGGA+GGG - chr4_2:21765885-21765904 Msa0594330:CDS 30.0%
TGTTGTTGTCATTGTAGATT+CGG + chr4_2:21766758-21766777 None:intergenic 30.0%
GCGCAATTGATTAAAAAGAA+AGG - chr4_2:21766891-21766910 Msa0594330:CDS 30.0%
TCTGATCAAGAATTGTTGAA+TGG - chr4_2:21766924-21766943 Msa0594330:CDS 30.0%
!! GAGCATTGGTTAGAAAATAT+AGG - chr4_2:21766958-21766977 Msa0594330:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG - chr4_2:21767033-21767052 Msa0594330:CDS 30.0%
CATTGAGAAATACCTATGTG+AGG + chr4_2:21764815-21764834 None:intergenic 35.0%
! CTAATAGTGCTCAAAGCATT+AGG + chr4_2:21764919-21764938 None:intergenic 35.0%
CAGTGATTAAATTGGGTCAA+AGG - chr4_2:21765825-21765844 Msa0594330:CDS 35.0%
!!! TTTTTTTCACTGTCCATCGA+AGG + chr4_2:21766029-21766048 None:intergenic 35.0%
CCTCTAGCTGAGTTTAAATT+TGG + chr4_2:21766059-21766078 None:intergenic 35.0%
CCAAATTTAAACTCAGCTAG+AGG - chr4_2:21766056-21766075 Msa0594330:intron 35.0%
!! TGAAGTGGTTGATGAGATTA+AGG - chr4_2:21766082-21766101 Msa0594330:intron 35.0%
TGTTTCTTGTGCAGACATAT+TGG - chr4_2:21766136-21766155 Msa0594330:intron 35.0%
ATTATTACTAACCGCAACGA+CGG + chr4_2:21766180-21766199 None:intergenic 35.0%
ACAGAAATTGTTAGCATGGT+TGG - chr4_2:21766278-21766297 Msa0594330:intron 35.0%
TATATATGGATGCAGTTAGG+AGG - chr4_2:21766528-21766547 Msa0594330:intron 35.0%
AGTTGAGAAAGACTGAATGA+TGG + chr4_2:21766636-21766655 None:intergenic 35.0%
! TAAGCCACATCAAATTTTGC+CGG + chr4_2:21766867-21766886 None:intergenic 35.0%
GATCAAGAATTGTTGAATGG+TGG - chr4_2:21766927-21766946 Msa0594330:CDS 35.0%
TTGTTGAATGGTGGTTATAC+TGG - chr4_2:21766936-21766955 Msa0594330:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG - chr4_2:21767032-21767051 Msa0594330:CDS 35.0%
CATTGAGAAATACCTATGTG+AGG + chr4_2:21764815-21764834 None:intergenic 35.0%
! CTAATAGTGCTCAAAGCATT+AGG + chr4_2:21764919-21764938 None:intergenic 35.0%
CAGTGATTAAATTGGGTCAA+AGG - chr4_2:21765825-21765844 Msa0594330:CDS 35.0%
!!! TTTTTTTCACTGTCCATCGA+AGG + chr4_2:21766029-21766048 None:intergenic 35.0%
CCTCTAGCTGAGTTTAAATT+TGG + chr4_2:21766059-21766078 None:intergenic 35.0%
CCAAATTTAAACTCAGCTAG+AGG - chr4_2:21766056-21766075 Msa0594330:intron 35.0%
!! TGAAGTGGTTGATGAGATTA+AGG - chr4_2:21766082-21766101 Msa0594330:intron 35.0%
TGTTTCTTGTGCAGACATAT+TGG - chr4_2:21766136-21766155 Msa0594330:intron 35.0%
ATTATTACTAACCGCAACGA+CGG + chr4_2:21766180-21766199 None:intergenic 35.0%
ACAGAAATTGTTAGCATGGT+TGG - chr4_2:21766278-21766297 Msa0594330:intron 35.0%
TATATATGGATGCAGTTAGG+AGG - chr4_2:21766528-21766547 Msa0594330:intron 35.0%
AGTTGAGAAAGACTGAATGA+TGG + chr4_2:21766636-21766655 None:intergenic 35.0%
! TAAGCCACATCAAATTTTGC+CGG + chr4_2:21766867-21766886 None:intergenic 35.0%
GATCAAGAATTGTTGAATGG+TGG - chr4_2:21766927-21766946 Msa0594330:CDS 35.0%
TTGTTGAATGGTGGTTATAC+TGG - chr4_2:21766936-21766955 Msa0594330:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG - chr4_2:21767032-21767051 Msa0594330:CDS 35.0%
AGTTCAAAGAGAGAACCGTA+TGG - chr4_2:21764957-21764976 Msa0594330:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG - chr4_2:21764958-21764977 Msa0594330:CDS 40.0%
!! GTAGTAAAGAAGCACCCATA+CGG + chr4_2:21764975-21764994 None:intergenic 40.0%
CAGTGATTAAACTGGGTCAA+AGG + chr4_2:21765500-21765519 None:intergenic 40.0%
!!! ATTTTGGTGATTTGCTGACG+TGG + chr4_2:21765523-21765542 None:intergenic 40.0%
ACGTCAGCAAATCACCAAAA+TGG - chr4_2:21765522-21765541 Msa0594330:intron 40.0%
ACGTCAGCAAATGACCAAAA+GGG + chr4_2:21765803-21765822 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAT+TGG - chr4_2:21765817-21765836 Msa0594330:CDS 40.0%
GACGTGGCAGTGATTAAATT+GGG - chr4_2:21765818-21765837 Msa0594330:CDS 40.0%
GTTTGCAGGGGCAAAAAAAA+AGG - chr4_2:21765869-21765888 Msa0594330:CDS 40.0%
! GAAGCTGTTGATAAAGCATG+TGG - chr4_2:21766104-21766123 Msa0594330:intron 40.0%
ATGTCTGCACAAGAAACAAC+TGG + chr4_2:21766134-21766153 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG + chr4_2:21766631-21766650 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG + chr4_2:21766706-21766725 None:intergenic 40.0%
CAAAATGTTTGTCCCAGAGA+AGG - chr4_2:21766804-21766823 Msa0594330:intron 40.0%
TACACCGGCAAAATTTGATG+TGG - chr4_2:21766860-21766879 Msa0594330:intron 40.0%
AGTTCAAAGAGAGAACCGTA+TGG - chr4_2:21764957-21764976 Msa0594330:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG - chr4_2:21764958-21764977 Msa0594330:CDS 40.0%
!! GTAGTAAAGAAGCACCCATA+CGG + chr4_2:21764975-21764994 None:intergenic 40.0%
CAGTGATTAAACTGGGTCAA+AGG + chr4_2:21765500-21765519 None:intergenic 40.0%
!!! ATTTTGGTGATTTGCTGACG+TGG + chr4_2:21765523-21765542 None:intergenic 40.0%
ACGTCAGCAAATCACCAAAA+TGG - chr4_2:21765522-21765541 Msa0594330:intron 40.0%
ACGTCAGCAAATGACCAAAA+GGG + chr4_2:21765803-21765822 None:intergenic 40.0%
TGACGTGGCAGTGATTAAAT+TGG - chr4_2:21765817-21765836 Msa0594330:CDS 40.0%
GACGTGGCAGTGATTAAATT+GGG - chr4_2:21765818-21765837 Msa0594330:CDS 40.0%
GTTTGCAGGGGCAAAAAAAA+AGG - chr4_2:21765869-21765888 Msa0594330:CDS 40.0%
! GAAGCTGTTGATAAAGCATG+TGG - chr4_2:21766104-21766123 Msa0594330:intron 40.0%
ATGTCTGCACAAGAAACAAC+TGG + chr4_2:21766134-21766153 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG + chr4_2:21766631-21766650 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG + chr4_2:21766706-21766725 None:intergenic 40.0%
CAAAATGTTTGTCCCAGAGA+AGG - chr4_2:21766804-21766823 Msa0594330:intron 40.0%
TACACCGGCAAAATTTGATG+TGG - chr4_2:21766860-21766879 Msa0594330:intron 40.0%
GAGCTGCTAACACTATTGCA+TGG + chr4_2:21764843-21764862 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG - chr4_2:21765398-21765417 Msa0594330:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG - chr4_2:21765399-21765418 Msa0594330:intron 45.0%
TTAAGCGAGCCCTATTTGCA+GGG + chr4_2:21765411-21765430 None:intergenic 45.0%
TTTAAGCGAGCCCTATTTGC+AGG + chr4_2:21765412-21765431 None:intergenic 45.0%
GACGTGGCAGTGATTAAACT+GGG + chr4_2:21765507-21765526 None:intergenic 45.0%
TGACGTGGCAGTGATTAAAC+TGG + chr4_2:21765508-21765527 None:intergenic 45.0%
CACGTCAGCAAATGACCAAA+AGG + chr4_2:21765804-21765823 None:intergenic 45.0%
!! CTTTTGGTCATTTGCTGACG+TGG - chr4_2:21765802-21765821 Msa0594330:CDS 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr4_2:21765915-21765934 Msa0594330:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr4_2:21765916-21765935 Msa0594330:intron 45.0%
TGATTCGTCCCTGCAAATAG+GGG + chr4_2:21765400-21765419 None:intergenic 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr4_2:21765399-21765418 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr4_2:21765398-21765417 None:intergenic 45.0%
TCTAGACTCTACACCTTCGA+TGG - chr4_2:21766013-21766032 Msa0594330:intron 45.0%
CTCAGCTAGAGGATTTGAAG+TGG - chr4_2:21766067-21766086 Msa0594330:intron 45.0%
! ACATATTGGCTGTAGCTGCA+AGG - chr4_2:21766150-21766169 Msa0594330:intron 45.0%
! CATATTGGCTGTAGCTGCAA+GGG - chr4_2:21766151-21766170 Msa0594330:intron 45.0%
ACCCTCATGGAATGTGAAAC+TGG - chr4_2:21766551-21766570 Msa0594330:intron 45.0%
CCCAGTTTCACATTCCATGA+GGG + chr4_2:21766555-21766574 None:intergenic 45.0%
CCCTCATGGAATGTGAAACT+GGG - chr4_2:21766552-21766571 Msa0594330:intron 45.0%
TCCCAGTTTCACATTCCATG+AGG + chr4_2:21766556-21766575 None:intergenic 45.0%
GATATTGCCCGAATCTGCAT+CGG + chr4_2:21766607-21766626 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG + chr4_2:21766629-21766648 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG + chr4_2:21766630-21766649 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGTCCC+TGG + chr4_2:21766677-21766696 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG + chr4_2:21766707-21766726 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG - chr4_2:21766705-21766724 Msa0594330:intron 45.0%
AATGTTTGTCCCAGAGAAGG+CGG - chr4_2:21766807-21766826 Msa0594330:intron 45.0%
TGGTGGTTATACTGGAGCAT+TGG - chr4_2:21766944-21766963 Msa0594330:CDS 45.0%
GTGAAGTTCGTTGCAATTGC+AGG - chr4_2:21767063-21767082 Msa0594330:CDS 45.0%
GAGCTGCTAACACTATTGCA+TGG + chr4_2:21764843-21764862 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG - chr4_2:21765398-21765417 Msa0594330:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG - chr4_2:21765399-21765418 Msa0594330:intron 45.0%
TTAAGCGAGCCCTATTTGCA+GGG + chr4_2:21765411-21765430 None:intergenic 45.0%
TTTAAGCGAGCCCTATTTGC+AGG + chr4_2:21765412-21765431 None:intergenic 45.0%
GACGTGGCAGTGATTAAACT+GGG + chr4_2:21765507-21765526 None:intergenic 45.0%
TGACGTGGCAGTGATTAAAC+TGG + chr4_2:21765508-21765527 None:intergenic 45.0%
CACGTCAGCAAATGACCAAA+AGG + chr4_2:21765804-21765823 None:intergenic 45.0%
!! CTTTTGGTCATTTGCTGACG+TGG - chr4_2:21765802-21765821 Msa0594330:CDS 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr4_2:21765915-21765934 Msa0594330:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr4_2:21765916-21765935 Msa0594330:intron 45.0%
TGATTCGTCCCTGCAAATAG+GGG + chr4_2:21765400-21765419 None:intergenic 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr4_2:21765399-21765418 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr4_2:21765398-21765417 None:intergenic 45.0%
TCTAGACTCTACACCTTCGA+TGG - chr4_2:21766013-21766032 Msa0594330:intron 45.0%
CTCAGCTAGAGGATTTGAAG+TGG - chr4_2:21766067-21766086 Msa0594330:intron 45.0%
! ACATATTGGCTGTAGCTGCA+AGG - chr4_2:21766150-21766169 Msa0594330:intron 45.0%
! CATATTGGCTGTAGCTGCAA+GGG - chr4_2:21766151-21766170 Msa0594330:intron 45.0%
ACCCTCATGGAATGTGAAAC+TGG - chr4_2:21766551-21766570 Msa0594330:intron 45.0%
CCCAGTTTCACATTCCATGA+GGG + chr4_2:21766555-21766574 None:intergenic 45.0%
CCCTCATGGAATGTGAAACT+GGG - chr4_2:21766552-21766571 Msa0594330:intron 45.0%
TCCCAGTTTCACATTCCATG+AGG + chr4_2:21766556-21766575 None:intergenic 45.0%
GATATTGCCCGAATCTGCAT+CGG + chr4_2:21766607-21766626 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG + chr4_2:21766629-21766648 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG + chr4_2:21766630-21766649 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGTCCC+TGG + chr4_2:21766677-21766696 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG + chr4_2:21766707-21766726 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG - chr4_2:21766705-21766724 Msa0594330:intron 45.0%
AATGTTTGTCCCAGAGAAGG+CGG - chr4_2:21766807-21766826 Msa0594330:intron 45.0%
TGGTGGTTATACTGGAGCAT+TGG - chr4_2:21766944-21766963 Msa0594330:CDS 45.0%
GTGAAGTTCGTTGCAATTGC+AGG - chr4_2:21767063-21767082 Msa0594330:CDS 45.0%
!!! AATTTTGAAATTTTTTTTTA+AGG + chr4_2:21765587-21765606 None:intergenic 5.0%
!! AATTTAATCATTAAAATAAA+GGG + chr4_2:21765959-21765978 None:intergenic 5.0%
!! TAATTTAATCATTAAAATAA+AGG + chr4_2:21765960-21765979 None:intergenic 5.0%
!!! TTATTTTAATGATTAAATTA+TGG - chr4_2:21765960-21765979 Msa0594330:intron 5.0%
!! AATAAAATAAAGTTAATAAA+AGG - chr4_2:21766324-21766343 Msa0594330:intron 5.0%
!!! AATTTTGAAATTTTTTTTTA+AGG + chr4_2:21765587-21765606 None:intergenic 5.0%
!! AATTTAATCATTAAAATAAA+GGG + chr4_2:21765959-21765978 None:intergenic 5.0%
!! TAATTTAATCATTAAAATAA+AGG + chr4_2:21765960-21765979 None:intergenic 5.0%
!!! TTATTTTAATGATTAAATTA+TGG - chr4_2:21765960-21765979 Msa0594330:intron 5.0%
!! AATAAAATAAAGTTAATAAA+AGG - chr4_2:21766324-21766343 Msa0594330:intron 5.0%
TCACCAAAATGGCACGCGAA+AGG - chr4_2:21765533-21765552 Msa0594330:intron 50.0%
CGAAAGGACGAAAATACCCC+TGG - chr4_2:21765549-21765568 Msa0594330:intron 50.0%
CGAAAGGACGAAAATACCCC+TGG + chr4_2:21765549-21765568 None:intergenic 50.0%
GGTGTGATTCAGGGTTGTGA+TGG - chr4_2:21765981-21766000 Msa0594330:intron 50.0%
! AAGTCGTGCCGATGCAGATT+CGG - chr4_2:21766596-21766615 Msa0594330:intron 50.0%
AAAGACCTCGTTGCCCTATC+TGG - chr4_2:21766690-21766709 Msa0594330:intron 50.0%
TTTGAGTCTCCGCCTTCTCT+GGG + chr4_2:21766819-21766838 None:intergenic 50.0%
TAACACTGTCGAGAGCTGCA+AGG + chr4_2:21766842-21766861 None:intergenic 50.0%
AGCTCTCGACAGTGTTACAC+CGG - chr4_2:21766845-21766864 Msa0594330:intron 50.0%
AAGCCACTTACTGGGAGACA+AGG - chr4_2:21767041-21767060 Msa0594330:CDS 50.0%
TCACCTTGTCTCCCAGTAAG+TGG + chr4_2:21767047-21767066 None:intergenic 50.0%
TCACCAAAATGGCACGCGAA+AGG - chr4_2:21765533-21765552 Msa0594330:intron 50.0%
CGAAAGGACGAAAATACCCC+TGG - chr4_2:21765549-21765568 Msa0594330:intron 50.0%
CGAAAGGACGAAAATACCCC+TGG + chr4_2:21765549-21765568 None:intergenic 50.0%
GGTGTGATTCAGGGTTGTGA+TGG - chr4_2:21765981-21766000 Msa0594330:intron 50.0%
! AAGTCGTGCCGATGCAGATT+CGG - chr4_2:21766596-21766615 Msa0594330:intron 50.0%
AAAGACCTCGTTGCCCTATC+TGG - chr4_2:21766690-21766709 Msa0594330:intron 50.0%
TTTGAGTCTCCGCCTTCTCT+GGG + chr4_2:21766819-21766838 None:intergenic 50.0%
TAACACTGTCGAGAGCTGCA+AGG + chr4_2:21766842-21766861 None:intergenic 50.0%
AGCTCTCGACAGTGTTACAC+CGG - chr4_2:21766845-21766864 Msa0594330:intron 50.0%
AAGCCACTTACTGGGAGACA+AGG - chr4_2:21767041-21767060 Msa0594330:CDS 50.0%
TCACCTTGTCTCCCAGTAAG+TGG + chr4_2:21767047-21767066 None:intergenic 50.0%
!!! CGTCCTTTCGCGTGCCATTT+TGG + chr4_2:21765539-21765558 None:intergenic 55.0%
! TGACCAAAAGGGCACGCGAA+AGG + chr4_2:21765792-21765811 None:intergenic 55.0%
TGCAGTTAGGAGGACCCTCA+TGG - chr4_2:21766538-21766557 Msa0594330:intron 55.0%
! AGTCGTGCCGATGCAGATTC+GGG - chr4_2:21766597-21766616 Msa0594330:intron 55.0%
GCAGATTCGGGCAATATCCC+CGG - chr4_2:21766609-21766628 Msa0594330:intron 55.0%
GTTTGAGTCTCCGCCTTCTC+TGG + chr4_2:21766820-21766839 None:intergenic 55.0%
!!! CGTCCTTTCGCGTGCCATTT+TGG + chr4_2:21765539-21765558 None:intergenic 55.0%
! TGACCAAAAGGGCACGCGAA+AGG + chr4_2:21765792-21765811 None:intergenic 55.0%
TGCAGTTAGGAGGACCCTCA+TGG - chr4_2:21766538-21766557 Msa0594330:intron 55.0%
! AGTCGTGCCGATGCAGATTC+GGG - chr4_2:21766597-21766616 Msa0594330:intron 55.0%
GCAGATTCGGGCAATATCCC+CGG - chr4_2:21766609-21766628 Msa0594330:intron 55.0%
GTTTGAGTCTCCGCCTTCTC+TGG + chr4_2:21766820-21766839 None:intergenic 55.0%
! CGTCCTTTCGCGTGCCCTTT+TGG - chr4_2:21765786-21765805 Msa0594330:CDS 60.0%
TGCAAGGGACTCCGTCGTTG+CGG - chr4_2:21766166-21766185 Msa0594330:intron 60.0%
GTGCTCCAGATAGGGCAACG+AGG + chr4_2:21766698-21766717 None:intergenic 60.0%
! CGTCCTTTCGCGTGCCCTTT+TGG - chr4_2:21765786-21765805 Msa0594330:CDS 60.0%
TGCAAGGGACTCCGTCGTTG+CGG - chr4_2:21766166-21766185 Msa0594330:intron 60.0%
GTGCTCCAGATAGGGCAACG+AGG + chr4_2:21766698-21766717 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 21764808 21767097 21764808 ID=Msa0594330;Name=Msa0594330
chr4_2 mRNA 21764808 21767097 21764808 ID=Msa0594330-mRNA-1;Parent=Msa0594330;Name=Msa0594330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|321
chr4_2 exon 21766882 21767097 21766882 ID=Msa0594330-mRNA-1:exon:6007;Parent=Msa0594330-mRNA-1
chr4_2 exon 21765718 21765912 21765718 ID=Msa0594330-mRNA-1:exon:6006;Parent=Msa0594330-mRNA-1
chr4_2 exon 21764808 21765362 21764808 ID=Msa0594330-mRNA-1:exon:6005;Parent=Msa0594330-mRNA-1
chr4_2 CDS 21766882 21767097 21766882 ID=Msa0594330-mRNA-1:cds;Parent=Msa0594330-mRNA-1
chr4_2 CDS 21765718 21765912 21765718 ID=Msa0594330-mRNA-1:cds;Parent=Msa0594330-mRNA-1
chr4_2 CDS 21764808 21765362 21764808 ID=Msa0594330-mRNA-1:cds;Parent=Msa0594330-mRNA-1
Gene Sequence

>Msa0594330

ATGTCCTCACATAGGTATTTCTCAATGTTCTTCCATGCAATAGTGTTAGCAGCTCTTGCAACAACAACATATTCAGCACTCACAACAAATTACTATGACTACACATGCCCTAATGCTTTGAGCACTATTAGAAGTGTTGTTGAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATTCTTCTAGACTCTACACCTTCGATGGACAGTGAAAAAAATGCAAATCCAAATTTAAACTCAGCTAGAGGATTTGAAGTGGTTGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGGGACTCCGTCGTTGCGTTAGGAGGACCCTCATGGAATGTGAAACTGGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGATGCAGATTCGGGCAATATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTTGAAAACCAGGGACTAAACGAAAAAGACCTCGTTGCCCTATCTGGAGCACACACTATTGGATTCTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAACAACATCAATGCAAACTTCGCAAAACAACTTCAAAATGTTTGTCCCAGAGAAGGCGGAGACTCAAACCTTGCAGCTCTCGACAGTGTTACACCGGCAAAATTTGATGTGGCTTATTACGCGCAATTGATTAAAAAGAAAGGGCTTCTTCATTCTGATCAAGAATTGTTGAATGGTGGTTATACTGGAGCATTGGTTAGAAAATATAGGCGTGATACAAGAACTTTCTATAATGATTTTGCAAAATCTATGATTAAGATGGGAAATATTAAGCCACTTACTGGGAGACAAGGTGAAGTTCGTTGCAATTGCAGGAGAGCCAATTAA
Protein sequence

>Msa0594330

MSSHRYFSMFFHAIVLAALATTTYSALTTNYYDYTCPNALSTIRSVVEAAVQRENRMGASLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNLNSARGFEVVDEIKEAVDKACGKPVVSCADILAVAARDSVVALGGPSWNVKLGRRDSKTASRADADSGNIPGPSFSLSQLIKNFENQGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDNNINANFAKQLQNVCPREGGDSNLAALDSVTPAKFDVAYYAQLIKKKGLLHSDQELLNGGYTGALVRKYRRDTRTFYNDFAKSMIKMGNIKPLTGRQGEVRCNCRRAN*