AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538440 MtrunA17_Chr4g0013171 91.900 321 26 0 1 321 1 321 0.0 620
Msa0538440 MtrunA17_Chr4g0013181 92.835 321 23 0 1 321 33 353 0.0 594
Msa0538440 MtrunA17_Chr5g0432331 62.145 317 114 4 9 321 38 352 1.31e-139 399
Msa0538440 MtrunA17_Chr5g0432341 60.615 325 120 5 1 321 1 321 3.33e-137 391
Msa0538440 MtrunA17_Chr5g0432351 59.692 325 123 5 1 321 1 321 6.87e-136 388
Msa0538440 MtrunA17_Chr5g0432441 59.752 323 126 2 2 321 5 326 1.65e-132 380
Msa0538440 MtrunA17_Chr3g0106921 59.554 314 123 3 11 321 8 320 1.87e-128 369
Msa0538440 MtrunA17_Chr3g0114451 57.716 324 128 5 1 321 1 318 1.92e-124 359
Msa0538440 MtrunA17_Chr3g0107881 55.828 326 137 5 1 321 1 324 4.17e-122 353
Msa0538440 MtrunA17_Chr4g0013201 56.494 308 132 2 14 321 33 338 4.99e-122 353
Msa0538440 MtrunA17_Chr3g0129051 55.096 314 137 3 10 321 11 322 6.87e-122 352
Msa0538440 MtrunA17_Chr5g0438021 55.272 313 135 4 11 321 16 325 1.22e-120 349
Msa0538440 MtrunA17_Chr2g0320061 55.096 314 138 3 9 321 7 318 7.56e-119 345
Msa0538440 MtrunA17_Chr7g0244451 56.774 310 132 2 12 321 9 316 1.47e-118 344
Msa0538440 MtrunA17_Chr7g0244461 55.932 295 128 2 27 321 20 312 5.24e-118 342
Msa0538440 MtrunA17_Chr2g0320031 54.921 315 138 4 9 321 7 319 1.77e-116 338
Msa0538440 MtrunA17_Chr4g0043391 53.374 326 145 5 1 321 1 324 2.19e-116 338
Msa0538440 MtrunA17_Chr3g0129041 57.692 312 127 4 13 321 13 322 2.60e-116 338
Msa0538440 MtrunA17_Chr3g0106901 54.829 321 143 2 1 321 5 323 3.07e-116 338
Msa0538440 MtrunA17_Chr2g0320071 52.532 316 148 2 6 321 4 317 3.80e-116 338
Msa0538440 MtrunA17_Chr2g0320101 52.848 316 147 2 6 321 4 317 2.37e-115 336
Msa0538440 MtrunA17_Chr2g0320051 53.822 314 142 3 9 321 7 318 7.80e-115 335
Msa0538440 MtrunA17_Chr4g0038161 52.322 323 146 5 3 321 2 320 9.01e-115 334
Msa0538440 MtrunA17_Chr3g0129061 54.938 324 141 4 1 321 1 322 2.31e-114 333
Msa0538440 MtrunA17_Chr4g0038151 52.778 324 144 6 3 321 2 321 3.72e-114 333
Msa0538440 MtrunA17_Chr4g0038171 53.994 313 137 5 14 321 11 321 5.76e-114 332
Msa0538440 MtrunA17_Chr2g0320091 51.735 317 150 3 6 321 4 318 2.32e-112 328
Msa0538440 MtrunA17_Chr4g0013191 55.290 293 127 3 31 321 50 340 5.04e-112 328
Msa0538440 MtrunA17_Chr5g0404721 55.116 303 126 4 27 321 30 330 1.05e-110 325
Msa0538440 MtrunA17_Chr1g0213061 51.125 311 146 4 14 321 14 321 5.07e-108 318
Msa0538440 MtrunA17_Chr8g0372601 54.098 305 130 4 25 321 28 330 6.04e-108 317
Msa0538440 MtrunA17_Chr7g0224371 52.077 313 147 3 9 321 13 322 1.61e-107 316
Msa0538440 MtrunA17_Chr5g0432401 50.943 318 108 6 10 320 9 285 2.02e-103 304
Msa0538440 MtrunA17_Chr1g0155611 51.148 305 138 4 26 321 45 347 3.57e-101 301
Msa0538440 MtrunA17_Chr4g0070951 49.394 330 152 5 3 321 4 329 1.01e-99 296
Msa0538440 MtrunA17_Chr7g0258811 46.224 331 164 6 1 321 45 371 2.11e-98 295
Msa0538440 MtrunA17_Chr2g0292211 47.840 324 158 4 7 321 20 341 1.21e-97 292
Msa0538440 MtrunA17_Chr2g0291751 48.193 332 159 5 1 321 1 330 1.25e-97 292
Msa0538440 MtrunA17_Chr1g0175561 47.059 323 155 6 9 321 10 326 2.49e-97 290
Msa0538440 MtrunA17_Chr4g0068621 49.186 307 148 4 21 321 32 336 3.19e-97 290
Msa0538440 MtrunA17_Chr2g0292181 48.113 318 154 4 13 321 24 339 1.27e-96 290
Msa0538440 MtrunA17_Chr5g0402571 46.417 321 161 4 9 321 9 326 3.22e-96 287
Msa0538440 MtrunA17_Chr2g0292241 47.634 317 155 4 14 321 16 330 1.56e-95 286
Msa0538440 MtrunA17_Chr2g0299691 48.860 307 141 5 27 321 56 358 3.24e-95 286
Msa0538440 MtrunA17_Chr2g0292261 48.428 318 153 4 13 321 15 330 7.46e-95 285
Msa0538440 MtrunA17_Chr2g0292151 46.226 318 160 4 13 321 15 330 1.09e-94 285
Msa0538440 MtrunA17_Chr5g0400331 49.838 309 138 5 27 321 26 331 2.54e-94 283
Msa0538440 MtrunA17_Chr2g0292271 46.273 322 160 5 11 321 11 330 1.13e-93 282
Msa0538440 MtrunA17_Chr5g0402581 45.171 321 165 4 9 321 9 326 2.27e-93 280
Msa0538440 MtrunA17_Chr2g0292091 46.497 314 157 4 17 321 14 325 3.97e-93 280
Msa0538440 MtrunA17_Chr2g0292251 48.684 304 145 4 27 321 28 329 1.73e-92 279
Msa0538440 MtrunA17_Chr2g0292291 47.649 319 155 5 13 321 16 332 1.92e-92 279
Msa0538440 MtrunA17_Chr2g0292111 45.912 318 161 4 13 321 15 330 4.41e-92 278
Msa0538440 MtrunA17_Chr4g0013721 47.896 309 149 5 20 321 93 396 1.08e-89 274
Msa0538440 MtrunA17_Chr2g0292101 46.226 318 160 4 13 321 11 326 1.21e-88 269
Msa0538440 MtrunA17_Chr4g0013821 45.277 307 156 5 22 321 23 324 1.59e-85 261
Msa0538440 MtrunA17_Chr5g0421411 48.084 287 135 6 47 321 1 285 6.32e-85 257
Msa0538440 MtrunA17_Chr2g0322861 42.991 321 170 7 10 321 70 386 5.46e-84 258
Msa0538440 MtrunA17_Chr1g0204011 41.159 328 177 7 1 321 4 322 2.69e-80 246
Msa0538440 MtrunA17_Chr8g0371381 43.322 307 159 7 22 321 21 319 3.12e-80 246
Msa0538440 MtrunA17_Chr5g0405991 41.693 319 170 8 10 321 7 316 2.81e-78 241
Msa0538440 MtrunA17_Chr1g0194151 42.296 331 176 6 4 321 5 333 2.84e-78 242
Msa0538440 MtrunA17_Chr4g0024121 39.210 329 187 6 1 321 3 326 3.15e-77 239
Msa0538440 MtrunA17_Chr6g0477071 40.940 298 168 6 25 321 52 342 3.24e-77 239
Msa0538440 MtrunA17_Chr1g0157051 41.824 318 172 7 9 319 7 318 3.24e-77 239
Msa0538440 MtrunA17_Chr2g0279041 40.979 327 174 7 7 321 6 325 4.47e-77 238
Msa0538440 MtrunA17_Chr1g0194271 42.183 339 172 7 4 321 5 340 3.27e-76 237
Msa0538440 MtrunA17_Chr3g0128061 39.873 316 180 4 14 321 13 326 1.08e-75 235
Msa0538440 MtrunA17_Chr1g0148021 41.088 331 182 7 1 321 1 328 2.74e-75 234
Msa0538440 MtrunA17_Chr7g0225221 39.937 318 183 6 9 321 6 320 8.60e-75 233
Msa0538440 MtrunA17_Chr1g0188431 41.216 296 166 6 27 321 39 327 2.87e-74 231
Msa0538440 MtrunA17_Chr7g0254231 40.878 296 168 5 27 321 22 311 5.82e-74 230
Msa0538440 MtrunA17_Chr4g0063671 40.938 320 170 6 14 321 8 320 2.09e-72 226
Msa0538440 MtrunA17_Chr3g0114461 56.614 189 80 2 134 321 5 192 4.59e-70 216
Msa0538440 MtrunA17_Chr4g0046131 41.265 332 172 9 7 317 13 342 6.24e-69 218
Msa0538440 MtrunA17_Chr1g0164891 41.060 302 165 6 31 321 93 392 7.80e-69 219
Msa0538440 MtrunA17_Chr5g0401431 37.267 322 183 6 6 317 13 325 9.00e-69 217
Msa0538440 MtrunA17_Chr4g0053871 38.820 322 190 5 1 317 1 320 1.32e-68 217
Msa0538440 MtrunA17_Chr4g0076211 37.647 340 177 9 6 321 5 333 1.51e-68 217
Msa0538440 MtrunA17_Chr1g0197411 38.906 329 186 7 6 321 4 330 1.80e-68 217
Msa0538440 MtrunA17_Chr6g0460711 36.478 318 186 7 9 321 8 314 2.55e-68 216
Msa0538440 MtrunA17_Chr7g0268501 37.963 324 187 7 5 321 4 320 2.84e-68 216
Msa0538440 MtrunA17_Chr7g0268521 37.963 324 187 7 5 321 4 320 2.84e-68 216
Msa0538440 MtrunA17_Chr4g0072091 41.118 304 166 6 27 321 24 323 9.30e-68 214
Msa0538440 MtrunA17_Chr2g0278671 40.584 308 166 6 25 321 22 323 5.51e-67 213
Msa0538440 MtrunA17_Chr2g0296621 42.244 303 156 8 27 321 50 341 6.02e-67 213
Msa0538440 MtrunA17_Chr7g0254201 36.964 303 179 5 24 321 17 312 1.36e-66 211
Msa0538440 MtrunA17_Chr6g0467161 39.262 298 174 6 26 321 44 336 6.28e-66 210
Msa0538440 MtrunA17_Chr6g0451571 36.533 323 192 7 7 321 17 334 1.06e-63 204
Msa0538440 MtrunA17_Chr2g0329641 38.245 319 178 6 15 321 24 335 5.05e-63 203
Msa0538440 MtrunA17_Chr8g0364291 35.802 324 197 5 7 321 3 324 1.70e-62 201
Msa0538440 MtrunA17_Chr2g0316791 38.922 334 162 8 25 319 74 404 3.03e-62 203
Msa0538440 MtrunA17_Chr6g0467121 36.076 316 195 6 7 321 54 363 7.55e-61 199
Msa0538440 MtrunA17_Chr2g0316481 38.323 334 164 8 25 319 74 404 1.11e-60 199
Msa0538440 MtrunA17_Chr2g0316831 38.323 334 164 8 25 319 110 440 2.20e-60 199
Msa0538440 MtrunA17_Chr2g0316191 38.209 335 164 8 25 319 74 405 5.33e-60 197
Msa0538440 MtrunA17_Chr6g0467251 37.037 297 181 5 27 321 36 328 2.27e-59 194
Msa0538440 MtrunA17_Chr2g0279061 42.748 262 132 6 71 321 12 266 2.97e-59 191
Msa0538440 MtrunA17_Chr4g0075241 34.884 301 188 4 27 321 29 327 1.20e-58 191
Msa0538440 MtrunA17_Chr2g0311251 37.313 335 167 9 25 320 9 339 2.71e-55 183
Msa0538440 MtrunA17_Chr3g0136751 35.294 323 194 4 8 321 6 322 4.17e-54 179
Msa0538440 MtrunA17_Chr2g0311241 32.759 406 182 11 2 320 28 429 2.87e-53 180
Msa0538440 MtrunA17_Chr4g0074851 34.884 301 188 5 26 321 31 328 9.54e-53 176
Msa0538440 MtrunA17_Chr1g0181511 35.762 302 186 5 25 321 25 323 3.25e-52 174
Msa0538440 MtrunA17_Chr1g0181431 34.768 302 189 5 25 321 25 323 1.19e-51 173
Msa0538440 MtrunA17_Chr1g0181481 35.762 302 186 5 25 321 25 323 1.83e-51 172
Msa0538440 MtrunA17_Chr5g0413051 32.248 307 194 6 27 321 73 377 5.58e-50 170
Msa0538440 MtrunA17_Chr2g0292281 46.226 212 92 5 120 321 17 216 1.12e-48 163
Msa0538440 MtrunA17_Chr5g0432321 61.864 118 43 2 149 266 17 132 4.94e-43 144
Msa0538440 MtrunA17_Chr3g0114491 64.545 110 38 1 27 136 18 126 6.87e-41 139
Msa0538440 MtrunA17_Chr2g0316141 37.918 269 142 8 73 319 11 276 1.56e-39 140
Msa0538440 MtrunA17_Chr2g0316181 37.918 269 142 8 73 319 11 276 1.56e-39 140
Msa0538440 MtrunA17_Chr4g0004591 28.037 321 162 6 27 320 77 355 2.81e-38 139
Msa0538440 MtrunA17_Chr2g0316811 33.681 288 134 9 25 258 48 332 1.25e-36 134
Msa0538440 MtrunA17_Chr3g0104101 43.262 141 68 4 193 321 9 149 6.46e-27 103
Msa0538440 MtrunA17_Chr5g0432361 49.462 93 44 2 230 320 17 108 8.93e-24 94.0
Msa0538440 MtrunA17_Chr1g0181501 31.217 189 123 4 138 321 3 189 9.21e-22 90.9
Msa0538440 MtrunA17_Chr2g0316771 31.818 176 83 3 179 317 7 182 2.86e-19 84.0
Msa0538440 MtrunA17_Chr6g0468731 56.338 71 26 3 66 136 22 87 3.74e-17 75.5
Msa0538440 MtrunA17_Chr1g0181491 41.071 112 61 4 25 135 10 117 1.19e-16 75.9
Msa0538440 MtrunA17_Chr4g0013811 51.351 74 35 1 139 212 6 78 1.61e-16 73.2
Msa0538440 MtrunA17_Chr7g0254181 38.318 107 60 3 89 195 22 122 6.17e-16 73.9
Msa0538440 MtrunA17_Chr1g0196191 56.716 67 27 2 69 135 27 91 2.24e-15 72.4
Msa0538440 MtrunA17_Chr3g0137751 26.820 261 120 9 59 302 106 312 2.03e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538440 AT5G05340.1 62.626 297 107 3 27 321 30 324 9.17e-130 373
Msa0538440 AT1G14550.1 52.978 319 145 4 7 321 4 321 9.57e-114 332
Msa0538440 AT5G58400.1 52.351 319 149 2 5 321 8 325 5.94e-113 330
Msa0538440 AT5G58390.1 55.484 310 135 2 14 321 8 316 2.43e-111 326
Msa0538440 AT4G36430.1 53.465 303 131 4 27 321 30 330 2.34e-109 322
Msa0538440 AT2G18150.1 53.135 303 132 4 27 321 36 336 1.18e-108 320
Msa0538440 AT2G18140.1 53.135 303 132 4 27 321 35 335 4.67e-107 316
Msa0538440 AT1G44970.1 50.637 314 144 4 17 321 35 346 2.88e-106 314
Msa0538440 AT1G14540.1 50.473 317 153 4 7 321 1 315 7.30e-106 312
Msa0538440 AT5G06720.1 49.842 317 148 4 14 321 19 333 1.20e-105 312
Msa0538440 AT3G50990.1 50.645 310 143 4 20 321 34 341 5.88e-105 311
Msa0538440 AT5G66390.1 49.530 319 151 4 11 321 17 333 1.88e-103 306
Msa0538440 AT3G32980.1 49.020 306 143 5 27 321 31 334 2.67e-97 291
Msa0538440 AT5G06730.1 45.741 317 161 4 14 321 20 334 1.13e-96 290
Msa0538440 AT3G49110.1 48.265 317 151 5 16 321 22 336 1.57e-96 290
Msa0538440 AT3G49120.1 47.923 313 150 5 20 321 25 335 1.42e-95 287
Msa0538440 AT4G08770.1 47.742 310 149 5 23 321 20 327 5.01e-94 283
Msa0538440 AT4G08780.1 46.795 312 153 5 21 321 18 327 1.73e-93 281
Msa0538440 AT2G35380.1 46.667 330 157 5 9 321 8 335 3.70e-91 275
Msa0538440 AT2G38380.1 46.130 323 157 7 13 321 14 333 1.13e-90 275
Msa0538440 AT1G49570.1 47.855 303 146 5 25 317 46 346 2.33e-90 274
Msa0538440 AT1G68850.1 43.881 335 168 8 5 321 3 335 2.73e-90 273
Msa0538440 AT2G38390.1 45.513 312 158 5 20 321 24 333 1.28e-89 272
Msa0538440 AT4G16270.1 47.987 298 143 5 32 321 55 348 1.78e-89 271
Msa0538440 AT5G19890.1 46.547 333 153 9 1 321 8 327 6.71e-89 269
Msa0538440 AT2G22420.1 44.136 324 167 6 7 321 1 319 2.49e-86 263
Msa0538440 AT5G19880.1 45.277 307 154 5 27 321 25 329 2.56e-84 258
Msa0538440 AT5G51890.1 42.901 324 166 9 7 321 9 322 1.40e-80 248
Msa0538440 AT5G42180.1 42.492 313 166 6 14 319 10 315 1.02e-79 245
Msa0538440 AT1G71695.1 43.624 298 163 4 27 321 44 339 1.05e-79 247
Msa0538440 AT3G01190.1 42.122 311 165 7 19 321 18 321 4.22e-79 244
Msa0538440 AT5G17820.1 39.812 319 173 6 10 321 7 313 5.34e-76 236
Msa0538440 AT5G15180.1 40.867 323 176 8 9 321 12 329 5.56e-76 236
Msa0538440 AT3G03670.1 40.252 318 174 6 14 321 10 321 1.16e-75 235
Msa0538440 AT5G64120.1 41.751 297 160 5 31 321 39 328 1.72e-75 235
Msa0538440 AT5G17820.2 39.812 319 173 6 10 321 60 366 5.19e-75 235
Msa0538440 AT3G21770.1 40.764 314 173 7 16 320 18 327 5.51e-75 234
Msa0538440 AT1G05240.1 41.967 305 162 7 27 321 26 325 9.26e-74 230
Msa0538440 AT1G05250.1 41.967 305 162 7 27 321 26 325 9.26e-74 230
Msa0538440 AT4G11290.1 39.144 327 186 7 5 321 3 326 1.21e-73 230
Msa0538440 AT1G05260.1 40.635 315 174 7 16 321 15 325 1.24e-73 230
Msa0538440 AT2G41480.1 40.426 329 177 6 5 321 7 328 4.60e-73 229
Msa0538440 AT4G33420.1 41.401 314 173 7 9 321 22 325 1.35e-71 225
Msa0538440 AT4G33420.2 41.401 314 173 7 9 321 69 372 5.82e-71 224
Msa0538440 AT5G40150.1 40.909 308 176 5 18 321 23 328 1.62e-70 222
Msa0538440 AT4G26010.1 38.462 312 180 7 8 318 6 306 4.60e-69 218
Msa0538440 AT5G67400.1 38.413 315 182 5 13 317 13 325 6.41e-69 218
Msa0538440 AT4G26010.2 38.462 312 180 7 8 318 34 334 6.92e-69 218
Msa0538440 AT3G28200.1 40.594 303 175 5 22 321 16 316 2.26e-68 216
Msa0538440 AT2G18980.1 38.671 331 185 7 1 321 1 323 4.05e-68 216
Msa0538440 AT2G35380.2 48.594 249 113 4 86 321 1 247 2.10e-67 211
Msa0538440 AT5G39580.1 38.415 328 186 7 1 321 1 319 2.59e-67 214
Msa0538440 AT5G14130.1 37.072 321 190 6 9 321 14 330 2.95e-66 211
Msa0538440 AT1G34510.1 37.662 308 183 6 15 321 10 309 5.90e-66 210
Msa0538440 AT5G14130.2 37.072 321 190 6 9 321 55 371 6.85e-66 211
Msa0538440 AT1G30870.1 40.850 306 159 8 27 321 51 345 2.51e-65 209
Msa0538440 AT5G47000.1 38.318 321 189 6 7 321 13 330 3.17e-65 209
Msa0538440 AT4G30170.1 39.414 307 170 7 25 321 25 325 4.21e-65 208
Msa0538440 AT4G37530.1 39.073 302 174 4 25 317 25 325 1.13e-64 207
Msa0538440 AT3G49960.1 37.261 314 185 5 14 317 14 325 2.82e-64 206
Msa0538440 AT4G33870.1 34.615 338 176 6 25 320 66 400 5.41e-64 207
Msa0538440 AT5G64110.1 40.000 325 172 8 10 321 16 330 1.04e-63 205
Msa0538440 AT4G17690.1 39.610 308 176 6 22 321 17 322 1.70e-63 204
Msa0538440 AT5G64100.1 39.934 303 162 7 29 321 39 331 5.05e-63 203
Msa0538440 AT1G24110.1 38.284 303 177 5 27 321 22 322 4.77e-61 197
Msa0538440 AT4G37520.1 37.417 302 179 4 25 317 25 325 2.09e-60 196
Msa0538440 AT2G39040.1 40.129 309 167 10 27 321 46 350 5.76e-60 196
Msa0538440 AT4G31760.1 34.985 323 195 4 8 321 10 326 8.26e-59 192
Msa0538440 AT4G37520.2 37.086 302 177 5 25 317 25 322 1.18e-58 191
Msa0538440 AT2G34060.1 35.503 338 196 8 1 318 8 343 2.20e-58 191
Msa0538440 AT4G37530.2 41.176 255 140 4 25 270 25 278 1.94e-57 187
Msa0538440 AT4G25980.1 37.785 307 173 6 27 321 26 326 4.66e-57 187
Msa0538440 AT5G22410.1 33.025 324 196 10 7 318 8 322 5.51e-57 187
Msa0538440 AT5G24070.1 36.170 329 188 8 7 321 15 335 2.04e-56 186
Msa0538440 AT4G21960.1 34.259 324 199 6 9 321 7 327 1.72e-55 183
Msa0538440 AT1G77100.1 39.739 307 170 10 24 321 19 319 2.38e-55 183
Msa0538440 AT2G43480.1 35.583 326 188 8 10 321 18 335 9.67e-55 182
Msa0538440 AT2G37130.1 36.213 301 183 6 27 321 30 327 2.77e-54 180
Msa0538440 AT2G37130.2 36.242 298 181 6 30 321 2 296 3.80e-54 179
Msa0538440 AT2G24800.1 34.426 305 184 5 27 321 31 329 1.14e-52 176
Msa0538440 AT3G17070.1 34.713 314 184 8 22 321 33 339 3.56e-47 162
Msa0538440 AT5G39580.2 39.151 212 116 6 5 216 5 203 5.25e-40 140
Msa0538440 AT4G25980.2 44.253 174 91 4 27 200 71 238 3.08e-38 137
Msa0538440 AT3G17070.2 34.457 267 153 9 69 321 18 276 7.06e-35 128
Msa0538440 AT2G24800.2 38.021 192 107 6 27 217 31 211 5.61e-33 122
Msa0538440 AT4G32320.1 29.615 260 116 10 58 302 114 321 6.87e-16 77.4
Msa0538440 AT1G77490.2 25.385 260 151 9 61 303 106 339 1.01e-12 68.9
Msa0538440 AT1G77490.1 25.385 260 151 9 61 303 106 339 1.25e-12 68.6

Find 53 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGCTGAATTTAAATT+TGG 0.113514 4_1:-17758694 None:intergenic
CAGTATCTTGATAAATTAAT+TGG 0.213697 4_1:-17760109 None:intergenic
GTTTGAGTCTCCGCCTTCTC+TGG 0.235917 4_1:-17759836 None:intergenic
TGAAGTGGTTGATGAGATTA+AGG 0.263243 4_1:+17758720 Msa0538440:CDS
CTAATAGTGCTCAAAGCATT+AGG 0.267809 4_1:-17758145 None:intergenic
GGAAATATTAAGCCACTTAC+TGG 0.284799 4_1:+17760051 Msa0538440:CDS
AAAGACCTCGTTGCCCTATC+TGG 0.286567 4_1:+17759709 Msa0538440:CDS
TGCAAAATCTATGATTAAGA+TGG 0.336658 4_1:+17760029 Msa0538440:CDS
TTGTTGAATGGTGGTTATAC+TGG 0.357733 4_1:+17759955 Msa0538440:CDS
GTGAAGTTCGTTGCAATTGC+AGG 0.359490 4_1:+17760082 Msa0538440:CDS
AGTCGTGCCGATGCAGATTC+AGG 0.362977 4_1:+17759616 Msa0538440:CDS
CTATCTGGAGCACACACTAT+TGG 0.391267 4_1:+17759724 Msa0538440:CDS
CAATAGTGTGTGCTCCAGAT+AGG 0.400931 4_1:-17759723 None:intergenic
TAATAGTGCTCAAAGCATTA+GGG 0.431156 4_1:-17758144 None:intergenic
AGAAAGACTGAATGATGGTC+CGG 0.452732 4_1:-17759647 None:intergenic
TGTTTCTTGTGCAGACATAT+TGG 0.453461 4_1:+17758774 Msa0538440:CDS
TTTGAGTCTCCGCCTTCTCT+GGG 0.468683 4_1:-17759835 None:intergenic
TGTTGTTGTCATTGTAGATT+CGG 0.474841 4_1:-17759774 None:intergenic
TCACCTTGTCTCCCAGTAAG+TGG 0.477158 4_1:-17760063 None:intergenic
GAGCATTGGTTAGAAAATAT+AGG 0.478103 4_1:+17759977 Msa0538440:CDS
ATGTCTGCACAAGAAACAAC+TGG 0.493198 4_1:-17758769 None:intergenic
GCAAAATCTATGATTAAGAT+GGG 0.499275 4_1:+17760030 Msa0538440:CDS
CCAAATTTAAATTCAGCTAG+AGG 0.524290 4_1:+17758694 Msa0538440:CDS
GAAAGACTGAATGATGGTCC+GGG 0.528311 4_1:-17759646 None:intergenic
TCTAGACTCTACACCTTCGA+TGG 0.530212 4_1:+17758651 Msa0538440:CDS
GGTGTGATTCAGGGTTGTGA+TGG 0.531565 4_1:+17758619 Msa0538440:intron
CCATCATGGAAAGTAAAACT+AGG 0.538621 4_1:+17759571 Msa0538440:CDS
CAAAATGTTTGTCCCAGAGA+AGG 0.543913 4_1:+17759823 Msa0538440:CDS
AATAGTGTGTGCTCCAGATA+GGG 0.548473 4_1:-17759722 None:intergenic
TCTGATCAAGAATTGTTGAA+TGG 0.552781 4_1:+17759943 Msa0538440:CDS
TGCAGTTAGGAGGACCATCA+TGG 0.571529 4_1:+17759557 Msa0538440:intron
GATATTGCCTGAATCTGCAT+CGG 0.581586 4_1:-17759623 None:intergenic
GCAGATTCAGGCAATATCCC+CGG 0.595745 4_1:+17759628 Msa0538440:CDS
TATATATGGATGCAGTTAGG+AGG 0.599797 4_1:+17759547 Msa0538440:intron
GAGCTGCTAACACTATTGCA+TGG 0.601264 4_1:-17758069 None:intergenic
TACACCGGCAAAATTTGATG+TGG 0.613189 4_1:+17759879 Msa0538440:CDS
GAAATATTAAGCCACTTACT+GGG 0.616763 4_1:+17760052 Msa0538440:CDS
GATCAAGAATTGTTGAATGG+TGG 0.618707 4_1:+17759946 Msa0538440:CDS
GAAGCTGTTGATAAAGCATG+TGG 0.618722 4_1:+17758742 Msa0538440:CDS
TGCAAGAGACTCTGTCGTTG+CGG 0.621078 4_1:+17758804 Msa0538440:CDS
AGTTGAGAAAGACTGAATGA+TGG 0.626761 4_1:-17759652 None:intergenic
TTCAGCTAGAGGATTTGAAG+TGG 0.627832 4_1:+17758705 Msa0538440:CDS
GTAGTAAAGAAGCACCCATA+CGG 0.628918 4_1:-17758201 None:intergenic
GTTCAAAGAGAGAACCGTAT+GGG 0.629967 4_1:+17758187 Msa0538440:CDS
AATGTTTGTCCCAGAGAAGG+CGG 0.632543 4_1:+17759826 Msa0538440:CDS
AGTTCAAAGAGAGAACCGTA+TGG 0.633955 4_1:+17758186 Msa0538440:CDS
TGGTGGTTATACTGGAGCAT+TGG 0.634930 4_1:+17759963 Msa0538440:CDS
AGCTCTCGACAGTGTTACAC+CGG 0.659336 4_1:+17759864 Msa0538440:CDS
AAGCCACTTACTGGGAGACA+AGG 0.665399 4_1:+17760060 Msa0538440:CDS
AAAGACTGAATGATGGTCCG+GGG 0.668454 4_1:-17759645 None:intergenic
TAACACTGTCGAGAGCTGCA+AGG 0.690785 4_1:-17759858 None:intergenic
CATTGAGAAATACCTATGTG+AGG 0.711191 4_1:-17758041 None:intergenic
GTGCTCCAGATAGGGCAACG+AGG 0.748414 4_1:-17759714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATATAATTTTTTTTG+AGG - chr4_1:17758299-17758318 None:intergenic 10.0%
!! GATAAAATAAACTTAATAAA+AGG + chr4_1:17758966-17758985 Msa0538440:intron 10.0%
!!! CAATTAAGAAAATATTTTAT+AGG - chr4_1:17759324-17759343 None:intergenic 10.0%
!! TTGAAATTTATACTTATATA+TGG + chr4_1:17759533-17759552 Msa0538440:intron 10.0%
!!! TTTTGATATAATTTTTTTTG+AGG - chr4_1:17758299-17758318 None:intergenic 10.0%
!! GATAAAATAAACTTAATAAA+AGG + chr4_1:17758966-17758985 Msa0538440:intron 10.0%
!!! CAATTAAGAAAATATTTTAT+AGG - chr4_1:17759324-17759343 None:intergenic 10.0%
!! TTGAAATTTATACTTATATA+TGG + chr4_1:17759533-17759552 Msa0538440:intron 10.0%
!! AATAATATTATGTATACACA+TGG - chr4_1:17758275-17758294 None:intergenic 15.0%
!!! AATAAATTTATCGATTCATT+TGG - chr4_1:17758513-17758532 None:intergenic 15.0%
!!! AATTTTGATATATTCAAAGT+TGG - chr4_1:17759070-17759089 None:intergenic 15.0%
!!! GATAATTGAGATTTATTTTA+TGG + chr4_1:17759293-17759312 Msa0538440:intron 15.0%
!!! AAAATATTTTCTTAATTGAC+CGG + chr4_1:17759326-17759345 Msa0538440:intron 15.0%
!! AATAATATTATGTATACACA+TGG - chr4_1:17758275-17758294 None:intergenic 15.0%
!!! AATAAATTTATCGATTCATT+TGG - chr4_1:17758513-17758532 None:intergenic 15.0%
!!! AATTTTGATATATTCAAAGT+TGG - chr4_1:17759070-17759089 None:intergenic 15.0%
!!! GATAATTGAGATTTATTTTA+TGG + chr4_1:17759293-17759312 Msa0538440:intron 15.0%
!!! AAAATATTTTCTTAATTGAC+CGG + chr4_1:17759326-17759345 Msa0538440:intron 15.0%
!!! ACATTATATTTTGAACTAGT+CGG + chr4_1:17758883-17758902 Msa0538440:intron 20.0%
!! TAAACTTAATAAAAGGAAGT+TGG + chr4_1:17758973-17758992 Msa0538440:intron 20.0%
!!! TTTTCTAACTTATCTTTACT+CGG + chr4_1:17759017-17759036 Msa0538440:intron 20.0%
!!! ACATGCTACAAATATTTTTT+TGG + chr4_1:17759204-17759223 Msa0538440:intron 20.0%
!!! CATTTTAATTTTTTCTTTGC+TGG - chr4_1:17759488-17759507 None:intergenic 20.0%
!!! ACATTATATTTTGAACTAGT+CGG + chr4_1:17758883-17758902 Msa0538440:intron 20.0%
!! TAAACTTAATAAAAGGAAGT+TGG + chr4_1:17758973-17758992 Msa0538440:intron 20.0%
!!! TTTTCTAACTTATCTTTACT+CGG + chr4_1:17759017-17759036 Msa0538440:intron 20.0%
!!! ACATGCTACAAATATTTTTT+TGG + chr4_1:17759204-17759223 Msa0538440:intron 20.0%
!!! CATTTTAATTTTTTCTTTGC+TGG - chr4_1:17759488-17759507 None:intergenic 20.0%
! ATTAATTTATGGTGTGATTC+AGG + chr4_1:17758609-17758628 Msa0538440:intron 25.0%
! TTAATTTATGGTGTGATTCA+GGG + chr4_1:17758610-17758629 Msa0538440:intron 25.0%
! TTTGATATATTCAAAGTTGG+TGG - chr4_1:17759067-17759086 None:intergenic 25.0%
! ATCAAAAATTTCGAAAACCA+AGG + chr4_1:17759676-17759695 Msa0538440:CDS 25.0%
! TCGCAATTGATTAAAAAGAA+AGG + chr4_1:17759910-17759929 Msa0538440:CDS 25.0%
! CGCAATTGATTAAAAAGAAA+GGG + chr4_1:17759911-17759930 Msa0538440:CDS 25.0%
! TGCAAAATCTATGATTAAGA+TGG + chr4_1:17760029-17760048 Msa0538440:CDS 25.0%
! GCAAAATCTATGATTAAGAT+GGG + chr4_1:17760030-17760049 Msa0538440:CDS 25.0%
! ATTAATTTATGGTGTGATTC+AGG + chr4_1:17758609-17758628 Msa0538440:intron 25.0%
! TTAATTTATGGTGTGATTCA+GGG + chr4_1:17758610-17758629 Msa0538440:intron 25.0%
! TTTGATATATTCAAAGTTGG+TGG - chr4_1:17759067-17759086 None:intergenic 25.0%
! ATCAAAAATTTCGAAAACCA+AGG + chr4_1:17759676-17759695 Msa0538440:CDS 25.0%
! TCGCAATTGATTAAAAAGAA+AGG + chr4_1:17759910-17759929 Msa0538440:CDS 25.0%
! CGCAATTGATTAAAAAGAAA+GGG + chr4_1:17759911-17759930 Msa0538440:CDS 25.0%
! TGCAAAATCTATGATTAAGA+TGG + chr4_1:17760029-17760048 Msa0538440:CDS 25.0%
! GCAAAATCTATGATTAAGAT+GGG + chr4_1:17760030-17760049 Msa0538440:CDS 25.0%
! TAATAGTGCTCAAAGCATTA+GGG - chr4_1:17758147-17758166 None:intergenic 30.0%
CCTCTAGCTGAATTTAAATT+TGG - chr4_1:17758697-17758716 None:intergenic 30.0%
CCAAATTTAAATTCAGCTAG+AGG + chr4_1:17758694-17758713 Msa0538440:CDS 30.0%
TAAAACAGAATTAGTCAGCA+TGG + chr4_1:17758912-17758931 Msa0538440:intron 30.0%
CAAATCAGTATATACACGTA+TGG - chr4_1:17759429-17759448 None:intergenic 30.0%
! CATACGTGTATATACTGATT+TGG + chr4_1:17759427-17759446 Msa0538440:intron 30.0%
ACTTATATATGGATGCAGTT+AGG + chr4_1:17759544-17759563 Msa0538440:intron 30.0%
TGTTGTTGTCATTGTAGATT+CGG - chr4_1:17759777-17759796 None:intergenic 30.0%
TCTGATCAAGAATTGTTGAA+TGG + chr4_1:17759943-17759962 Msa0538440:CDS 30.0%
!! GAGCATTGGTTAGAAAATAT+AGG + chr4_1:17759977-17759996 Msa0538440:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG + chr4_1:17760052-17760071 Msa0538440:CDS 30.0%
! TAATAGTGCTCAAAGCATTA+GGG - chr4_1:17758147-17758166 None:intergenic 30.0%
CCTCTAGCTGAATTTAAATT+TGG - chr4_1:17758697-17758716 None:intergenic 30.0%
CCAAATTTAAATTCAGCTAG+AGG + chr4_1:17758694-17758713 Msa0538440:CDS 30.0%
TAAAACAGAATTAGTCAGCA+TGG + chr4_1:17758912-17758931 Msa0538440:intron 30.0%
CAAATCAGTATATACACGTA+TGG - chr4_1:17759429-17759448 None:intergenic 30.0%
! CATACGTGTATATACTGATT+TGG + chr4_1:17759427-17759446 Msa0538440:intron 30.0%
ACTTATATATGGATGCAGTT+AGG + chr4_1:17759544-17759563 Msa0538440:intron 30.0%
TGTTGTTGTCATTGTAGATT+CGG - chr4_1:17759777-17759796 None:intergenic 30.0%
TCTGATCAAGAATTGTTGAA+TGG + chr4_1:17759943-17759962 Msa0538440:CDS 30.0%
!! GAGCATTGGTTAGAAAATAT+AGG + chr4_1:17759977-17759996 Msa0538440:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG + chr4_1:17760052-17760071 Msa0538440:CDS 30.0%
CATTGAGAAATACCTATGTG+AGG - chr4_1:17758044-17758063 None:intergenic 35.0%
! CTAATAGTGCTCAAAGCATT+AGG - chr4_1:17758148-17758167 None:intergenic 35.0%
!!! TTTTTTTCACTGTCCATCGA+AGG - chr4_1:17758667-17758686 None:intergenic 35.0%
!! TGAAGTGGTTGATGAGATTA+AGG + chr4_1:17758720-17758739 Msa0538440:CDS 35.0%
TGTTTCTTGTGCAGACATAT+TGG + chr4_1:17758774-17758793 Msa0538440:CDS 35.0%
! TTTGTAGCATGTAACTTGTG+TGG - chr4_1:17759196-17759215 None:intergenic 35.0%
!! TTTTCTTAATTGACCGGTTC+AGG + chr4_1:17759332-17759351 Msa0538440:intron 35.0%
TCAGTATATACACGTATGGA+AGG - chr4_1:17759425-17759444 None:intergenic 35.0%
TATATATGGATGCAGTTAGG+AGG + chr4_1:17759547-17759566 Msa0538440:intron 35.0%
!!! CCTAGTTTTACTTTCCATGA+TGG - chr4_1:17759574-17759593 None:intergenic 35.0%
CCATCATGGAAAGTAAAACT+AGG + chr4_1:17759571-17759590 Msa0538440:CDS 35.0%
AGTTGAGAAAGACTGAATGA+TGG - chr4_1:17759655-17759674 None:intergenic 35.0%
! TAAGCCACATCAAATTTTGC+CGG - chr4_1:17759886-17759905 None:intergenic 35.0%
GATCAAGAATTGTTGAATGG+TGG + chr4_1:17759946-17759965 Msa0538440:CDS 35.0%
TTGTTGAATGGTGGTTATAC+TGG + chr4_1:17759955-17759974 Msa0538440:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG + chr4_1:17760051-17760070 Msa0538440:CDS 35.0%
CATTGAGAAATACCTATGTG+AGG - chr4_1:17758044-17758063 None:intergenic 35.0%
! CTAATAGTGCTCAAAGCATT+AGG - chr4_1:17758148-17758167 None:intergenic 35.0%
!!! TTTTTTTCACTGTCCATCGA+AGG - chr4_1:17758667-17758686 None:intergenic 35.0%
!! TGAAGTGGTTGATGAGATTA+AGG + chr4_1:17758720-17758739 Msa0538440:CDS 35.0%
TGTTTCTTGTGCAGACATAT+TGG + chr4_1:17758774-17758793 Msa0538440:CDS 35.0%
! TTTGTAGCATGTAACTTGTG+TGG - chr4_1:17759196-17759215 None:intergenic 35.0%
!! TTTTCTTAATTGACCGGTTC+AGG + chr4_1:17759332-17759351 Msa0538440:intron 35.0%
TCAGTATATACACGTATGGA+AGG - chr4_1:17759425-17759444 None:intergenic 35.0%
TATATATGGATGCAGTTAGG+AGG + chr4_1:17759547-17759566 Msa0538440:intron 35.0%
!!! CCTAGTTTTACTTTCCATGA+TGG - chr4_1:17759574-17759593 None:intergenic 35.0%
CCATCATGGAAAGTAAAACT+AGG + chr4_1:17759571-17759590 Msa0538440:CDS 35.0%
AGTTGAGAAAGACTGAATGA+TGG - chr4_1:17759655-17759674 None:intergenic 35.0%
! TAAGCCACATCAAATTTTGC+CGG - chr4_1:17759886-17759905 None:intergenic 35.0%
GATCAAGAATTGTTGAATGG+TGG + chr4_1:17759946-17759965 Msa0538440:CDS 35.0%
TTGTTGAATGGTGGTTATAC+TGG + chr4_1:17759955-17759974 Msa0538440:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG + chr4_1:17760051-17760070 Msa0538440:CDS 35.0%
AGTTCAAAGAGAGAACCGTA+TGG + chr4_1:17758186-17758205 Msa0538440:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG + chr4_1:17758187-17758206 Msa0538440:CDS 40.0%
!! GTAGTAAAGAAGCACCCATA+CGG - chr4_1:17758204-17758223 None:intergenic 40.0%
TTCAGCTAGAGGATTTGAAG+TGG + chr4_1:17758705-17758724 Msa0538440:CDS 40.0%
! GAAGCTGTTGATAAAGCATG+TGG + chr4_1:17758742-17758761 Msa0538440:CDS 40.0%
ATGTCTGCACAAGAAACAAC+TGG - chr4_1:17758772-17758791 None:intergenic 40.0%
ACAGAATTAGTCAGCATGGT+TGG + chr4_1:17758916-17758935 Msa0538440:intron 40.0%
TCTCAAGTTCTATCCTGAAC+CGG - chr4_1:17759348-17759367 None:intergenic 40.0%
GATATTGCCTGAATCTGCAT+CGG - chr4_1:17759626-17759645 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG - chr4_1:17759650-17759669 None:intergenic 40.0%
!! CAACGAGGTCTTTTTCGTTT+AGG - chr4_1:17759702-17759721 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG - chr4_1:17759725-17759744 None:intergenic 40.0%
CAAAATGTTTGTCCCAGAGA+AGG + chr4_1:17759823-17759842 Msa0538440:CDS 40.0%
TACACCGGCAAAATTTGATG+TGG + chr4_1:17759879-17759898 Msa0538440:CDS 40.0%
AGTTCAAAGAGAGAACCGTA+TGG + chr4_1:17758186-17758205 Msa0538440:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG + chr4_1:17758187-17758206 Msa0538440:CDS 40.0%
!! GTAGTAAAGAAGCACCCATA+CGG - chr4_1:17758204-17758223 None:intergenic 40.0%
TTCAGCTAGAGGATTTGAAG+TGG + chr4_1:17758705-17758724 Msa0538440:CDS 40.0%
! GAAGCTGTTGATAAAGCATG+TGG + chr4_1:17758742-17758761 Msa0538440:CDS 40.0%
ATGTCTGCACAAGAAACAAC+TGG - chr4_1:17758772-17758791 None:intergenic 40.0%
ACAGAATTAGTCAGCATGGT+TGG + chr4_1:17758916-17758935 Msa0538440:intron 40.0%
TCTCAAGTTCTATCCTGAAC+CGG - chr4_1:17759348-17759367 None:intergenic 40.0%
GATATTGCCTGAATCTGCAT+CGG - chr4_1:17759626-17759645 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG - chr4_1:17759650-17759669 None:intergenic 40.0%
!! CAACGAGGTCTTTTTCGTTT+AGG - chr4_1:17759702-17759721 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG - chr4_1:17759725-17759744 None:intergenic 40.0%
CAAAATGTTTGTCCCAGAGA+AGG + chr4_1:17759823-17759842 Msa0538440:CDS 40.0%
TACACCGGCAAAATTTGATG+TGG + chr4_1:17759879-17759898 Msa0538440:CDS 40.0%
GAGCTGCTAACACTATTGCA+TGG - chr4_1:17758072-17758091 None:intergenic 45.0%
TCTAGACTCTACACCTTCGA+TGG + chr4_1:17758651-17758670 Msa0538440:CDS 45.0%
TGAAGACCAGCAAACATGCA+TGG - chr4_1:17759400-17759419 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG - chr4_1:17759648-17759667 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG - chr4_1:17759649-17759668 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGGCCT+TGG - chr4_1:17759696-17759715 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG - chr4_1:17759726-17759745 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG + chr4_1:17759724-17759743 Msa0538440:CDS 45.0%
AATGTTTGTCCCAGAGAAGG+CGG + chr4_1:17759826-17759845 Msa0538440:CDS 45.0%
TGGTGGTTATACTGGAGCAT+TGG + chr4_1:17759963-17759982 Msa0538440:CDS 45.0%
GTGAAGTTCGTTGCAATTGC+AGG + chr4_1:17760082-17760101 Msa0538440:CDS 45.0%
GAGCTGCTAACACTATTGCA+TGG - chr4_1:17758072-17758091 None:intergenic 45.0%
TCTAGACTCTACACCTTCGA+TGG + chr4_1:17758651-17758670 Msa0538440:CDS 45.0%
TGAAGACCAGCAAACATGCA+TGG - chr4_1:17759400-17759419 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG - chr4_1:17759648-17759667 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG - chr4_1:17759649-17759668 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGGCCT+TGG - chr4_1:17759696-17759715 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG - chr4_1:17759726-17759745 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG + chr4_1:17759724-17759743 Msa0538440:CDS 45.0%
AATGTTTGTCCCAGAGAAGG+CGG + chr4_1:17759826-17759845 Msa0538440:CDS 45.0%
TGGTGGTTATACTGGAGCAT+TGG + chr4_1:17759963-17759982 Msa0538440:CDS 45.0%
GTGAAGTTCGTTGCAATTGC+AGG + chr4_1:17760082-17760101 Msa0538440:CDS 45.0%
!!! TTATTTTAATGATTAATTTA+TGG + chr4_1:17758528-17758547 Msa0538440:intron 5.0%
!!! TTATATTTTATTTTATCAAA+TGG + chr4_1:17758944-17758963 Msa0538440:intron 5.0%
!!! TTATTTTAATGATTAATTTA+TGG + chr4_1:17758528-17758547 Msa0538440:intron 5.0%
!!! TTATATTTTATTTTATCAAA+TGG + chr4_1:17758944-17758963 Msa0538440:intron 5.0%
GGTGTGATTCAGGGTTGTGA+TGG + chr4_1:17758619-17758638 Msa0538440:intron 50.0%
TGCAAGAGACTCTGTCGTTG+CGG + chr4_1:17758804-17758823 Msa0538440:CDS 50.0%
GTCACTCCATGCATGTTTGC+TGG + chr4_1:17759391-17759410 Msa0538440:intron 50.0%
TGCAGTTAGGAGGACCATCA+TGG + chr4_1:17759557-17759576 Msa0538440:intron 50.0%
GCAGATTCAGGCAATATCCC+CGG + chr4_1:17759628-17759647 Msa0538440:CDS 50.0%
AAAGACCTCGTTGCCCTATC+TGG + chr4_1:17759709-17759728 Msa0538440:CDS 50.0%
TTTGAGTCTCCGCCTTCTCT+GGG - chr4_1:17759838-17759857 None:intergenic 50.0%
TAACACTGTCGAGAGCTGCA+AGG - chr4_1:17759861-17759880 None:intergenic 50.0%
AGCTCTCGACAGTGTTACAC+CGG + chr4_1:17759864-17759883 Msa0538440:CDS 50.0%
AAGCCACTTACTGGGAGACA+AGG + chr4_1:17760060-17760079 Msa0538440:CDS 50.0%
TCACCTTGTCTCCCAGTAAG+TGG - chr4_1:17760066-17760085 None:intergenic 50.0%
GGTGTGATTCAGGGTTGTGA+TGG + chr4_1:17758619-17758638 Msa0538440:intron 50.0%
TGCAAGAGACTCTGTCGTTG+CGG + chr4_1:17758804-17758823 Msa0538440:CDS 50.0%
GTCACTCCATGCATGTTTGC+TGG + chr4_1:17759391-17759410 Msa0538440:intron 50.0%
TGCAGTTAGGAGGACCATCA+TGG + chr4_1:17759557-17759576 Msa0538440:intron 50.0%
GCAGATTCAGGCAATATCCC+CGG + chr4_1:17759628-17759647 Msa0538440:CDS 50.0%
AAAGACCTCGTTGCCCTATC+TGG + chr4_1:17759709-17759728 Msa0538440:CDS 50.0%
TTTGAGTCTCCGCCTTCTCT+GGG - chr4_1:17759838-17759857 None:intergenic 50.0%
TAACACTGTCGAGAGCTGCA+AGG - chr4_1:17759861-17759880 None:intergenic 50.0%
AGCTCTCGACAGTGTTACAC+CGG + chr4_1:17759864-17759883 Msa0538440:CDS 50.0%
AAGCCACTTACTGGGAGACA+AGG + chr4_1:17760060-17760079 Msa0538440:CDS 50.0%
TCACCTTGTCTCCCAGTAAG+TGG - chr4_1:17760066-17760085 None:intergenic 50.0%
! AGTCGTGCCGATGCAGATTC+AGG + chr4_1:17759616-17759635 Msa0538440:CDS 55.0%
GTTTGAGTCTCCGCCTTCTC+TGG - chr4_1:17759839-17759858 None:intergenic 55.0%
! AGTCGTGCCGATGCAGATTC+AGG + chr4_1:17759616-17759635 Msa0538440:CDS 55.0%
GTTTGAGTCTCCGCCTTCTC+TGG - chr4_1:17759839-17759858 None:intergenic 55.0%
GTGCTCCAGATAGGGCAACG+AGG - chr4_1:17759717-17759736 None:intergenic 60.0%
GTGCTCCAGATAGGGCAACG+AGG - chr4_1:17759717-17759736 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17758037 17760116 17758037 ID=Msa0538440;Name=Msa0538440
chr4_1 mRNA 17758037 17760116 17758037 ID=Msa0538440-mRNA-1;Parent=Msa0538440;Name=Msa0538440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|321
chr4_1 exon 17758037 17758252 17758037 ID=Msa0538440-mRNA-1:exon:5248;Parent=Msa0538440-mRNA-1
chr4_1 exon 17758631 17758825 17758631 ID=Msa0538440-mRNA-1:exon:5249;Parent=Msa0538440-mRNA-1
chr4_1 exon 17759562 17760116 17759562 ID=Msa0538440-mRNA-1:exon:5250;Parent=Msa0538440-mRNA-1
chr4_1 CDS 17758037 17758252 17758037 ID=Msa0538440-mRNA-1:cds;Parent=Msa0538440-mRNA-1
chr4_1 CDS 17758631 17758825 17758631 ID=Msa0538440-mRNA-1:cds;Parent=Msa0538440-mRNA-1
chr4_1 CDS 17759562 17760116 17759562 ID=Msa0538440-mRNA-1:cds;Parent=Msa0538440-mRNA-1
Gene Sequence

>Msa0538440

ATGTCCTCACATAGGTATTTCTCAATGTTCTTCCATGCAATAGTGTTAGCAGCTCTTGCAACAACAACATATTCAGCACTCACAACAAATTACTATGACTACACATGCCCTAATGCTTTGAGCACTATTAGAAGTGTTGTTAAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATTCTTCTAGACTCTACACCTTCGATGGACAGTGAAAAAAATGCAAATCCAAATTTAAATTCAGCTAGAGGATTTGAAGTGGTTGATGAGATTAAGGAAGCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCTGTCGTTGCGTTAGGAGGACCATCATGGAAAGTAAAACTAGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGATGCAGATTCAGGCAATATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTCGAAAACCAAGGCCTAAACGAAAAAGACCTCGTTGCCCTATCTGGAGCACACACTATTGGATTCTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAACAACATCAATGCAAACTTCGCAAAACAACTTCAAAATGTTTGTCCCAGAGAAGGCGGAGACTCAAACCTTGCAGCTCTCGACAGTGTTACACCGGCAAAATTTGATGTGGCTTATTACTCGCAATTGATTAAAAAGAAAGGGCTTCTTCATTCTGATCAAGAATTGTTGAATGGTGGTTATACTGGAGCATTGGTTAGAAAATATAGGCGTGATACAAGAACTTTCTATAATGACTTTGCAAAATCTATGATTAAGATGGGAAATATTAAGCCACTTACTGGGAGACAAGGTGAAGTTCGTTGCAATTGCAGGAGAGCCAATTAA
Protein sequence

>Msa0538440

MSSHRYFSMFFHAIVLAALATTTYSALTTNYYDYTCPNALSTIRSVVKAAVQRENRMGASLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNLNSARGFEVVDEIKEAVDKACGKPVVSCADILAVAARDSVVALGGPSWKVKLGRRDSKTASRADADSGNIPGPSFSLSQLIKNFENQGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDNNINANFAKQLQNVCPREGGDSNLAALDSVTPAKFDVAYYSQLIKKKGLLHSDQELLNGGYTGALVRKYRRDTRTFYNDFAKSMIKMGNIKPLTGRQGEVRCNCRRAN*