AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628810 MtrunA17_Chr4g0004911 94.939 494 24 1 1 494 1 493 0.0 931
Msa0628810 MtrunA17_Chr7g0243891 54.108 499 161 16 52 494 59 545 1.01e-153 449
Msa0628810 MtrunA17_Chr3g0106491 44.306 483 193 14 48 490 61 507 1.05e-102 317
Msa0628810 MtrunA17_Chr5g0432161 47.826 414 152 14 49 406 85 490 1.76e-100 313
Msa0628810 MtrunA17_Chr5g0445311 41.500 400 162 15 52 399 47 426 5.34e-77 251
Msa0628810 MtrunA17_Chr5g0418191 47.667 300 122 7 131 399 87 382 2.68e-75 243
Msa0628810 MtrunA17_Chr3g0101131 52.675 243 85 6 182 399 240 477 1.71e-72 240
Msa0628810 MtrunA17_Chr7g0218081 39.268 410 183 14 52 427 113 490 3.58e-72 238
Msa0628810 MtrunA17_Chr4g0042831 50.000 234 88 5 176 399 126 340 5.47e-70 228
Msa0628810 MtrunA17_Chr4g0042831 49.275 69 35 0 337 405 145 213 7.68e-13 70.1
Msa0628810 MtrunA17_Chr7g0249311 41.718 326 124 7 175 435 169 493 2.47e-65 223
Msa0628810 MtrunA17_Chr7g0263531 50.000 236 90 6 186 397 190 421 1.31e-63 213
Msa0628810 MtrunA17_Chr5g0447701 39.098 266 123 6 182 428 89 334 1.13e-48 172
Msa0628810 MtrunA17_Chr3g0079691 65.926 135 37 4 275 407 436 563 1.07e-47 175
Msa0628810 MtrunA17_Chr3g0079691 34.940 249 117 9 39 249 102 343 7.53e-25 108
Msa0628810 MtrunA17_Chr3g0079691 56.452 62 27 0 185 246 495 556 1.60e-16 82.8
Msa0628810 MtrunA17_Chr3g0079691 51.389 72 31 2 337 405 280 350 2.71e-13 72.4
Msa0628810 MtrunA17_Chr7g0249301 76.829 82 19 0 318 399 273 354 9.25e-41 150
Msa0628810 MtrunA17_Chr7g0249301 57.333 75 31 1 175 249 52 125 1.51e-20 93.6
Msa0628810 MtrunA17_Chr7g0249301 55.000 60 27 0 185 244 292 351 1.99e-15 77.8
Msa0628810 MtrunA17_Chr7g0249301 60.317 63 20 3 336 396 61 120 1.40e-13 72.4
Msa0628810 MtrunA17_Chr5g0447711 34.562 217 137 2 185 401 83 294 4.66e-38 141
Msa0628810 MtrunA17_Chr4g0074001 35.341 249 138 5 173 399 174 421 1.51e-37 144
Msa0628810 MtrunA17_Chr1g0188941 65.823 79 27 0 318 396 32 110 7.02e-33 121
Msa0628810 MtrunA17_Chr1g0188941 53.333 60 28 0 185 244 51 110 2.70e-17 77.8
Msa0628810 MtrunA17_Chr8g0335811 60.526 76 30 0 318 393 135 210 6.58e-28 111
Msa0628810 MtrunA17_Chr8g0335811 39.394 99 44 1 159 241 112 210 6.41e-16 77.0
Msa0628810 MtrunA17_Chr4g0051881 64.865 74 26 0 323 396 164 237 1.41e-27 113
Msa0628810 MtrunA17_Chr4g0051881 52.273 88 39 2 173 260 167 251 4.62e-20 91.3
Msa0628810 MtrunA17_Chr1g0150801 61.842 76 28 1 318 393 84 158 8.14e-27 106
Msa0628810 MtrunA17_Chr1g0150801 53.448 58 27 0 185 242 102 159 1.55e-15 74.3
Msa0628810 MtrunA17_Chr3g0129361 60.811 74 29 0 320 393 127 200 1.08e-26 107
Msa0628810 MtrunA17_Chr3g0129361 50.877 57 28 0 185 241 144 200 1.38e-14 73.2
Msa0628810 MtrunA17_Chr8g0386241 50.485 103 48 2 313 414 79 179 5.45e-26 104
Msa0628810 MtrunA17_Chr8g0386241 53.448 58 27 0 185 242 103 160 1.42e-15 75.1
Msa0628810 MtrunA17_Chr7g0270191 46.087 115 53 2 321 435 129 234 7.62e-26 107
Msa0628810 MtrunA17_Chr7g0270191 41.791 134 71 4 138 270 104 231 1.95e-20 91.7
Msa0628810 MtrunA17_Chr5g0443131 62.162 74 28 0 323 396 143 216 1.38e-25 106
Msa0628810 MtrunA17_Chr5g0443131 55.224 67 30 0 185 251 157 223 2.26e-17 82.8
Msa0628810 MtrunA17_Chr8g0383351 60.000 75 29 1 320 393 142 216 1.49e-25 104
Msa0628810 MtrunA17_Chr8g0383351 50.877 57 28 0 185 241 160 216 7.83e-15 73.9
Msa0628810 MtrunA17_Chr8g0383251 39.850 133 78 1 267 397 36 168 2.04e-25 102
Msa0628810 MtrunA17_Chr8g0383251 53.333 60 28 0 185 244 108 167 2.72e-15 74.3
Msa0628810 MtrunA17_Chr2g0294231 59.211 76 31 0 321 396 187 262 3.47e-25 107
Msa0628810 MtrunA17_Chr2g0294231 52.809 89 39 2 173 261 192 277 5.40e-22 97.8
Msa0628810 MtrunA17_Chr1g0194481 57.895 76 32 0 321 396 142 217 1.02e-24 104
Msa0628810 MtrunA17_Chr1g0194481 50.000 88 43 1 173 260 147 233 1.97e-19 89.4
Msa0628810 MtrunA17_Chr5g0418781 56.962 79 34 0 315 393 102 180 1.56e-24 103
Msa0628810 MtrunA17_Chr5g0418781 57.971 69 28 1 173 241 113 180 6.08e-17 81.3
Msa0628810 MtrunA17_Chr7g0224801 63.235 68 25 0 328 395 84 151 1.64e-24 100
Msa0628810 MtrunA17_Chr7g0224801 51.724 58 28 0 185 242 93 150 2.92e-15 73.6
Msa0628810 MtrunA17_Chr3g0099641 46.809 94 48 2 320 411 234 327 1.12e-23 103
Msa0628810 MtrunA17_Chr3g0099641 29.167 168 98 5 99 253 161 320 3.37e-13 71.6
Msa0628810 MtrunA17_Chr7g0270831 54.545 77 34 1 321 396 200 276 2.80e-23 102
Msa0628810 MtrunA17_Chr7g0270831 48.333 60 30 1 186 244 217 276 3.86e-14 74.3
Msa0628810 MtrunA17_Chr2g0288871 53.165 79 36 1 319 396 287 365 3.38e-23 102
Msa0628810 MtrunA17_Chr2g0288871 43.373 83 39 3 170 244 283 365 1.83e-14 75.9
Msa0628810 MtrunA17_Chr4g0051181 51.899 79 37 1 321 398 227 305 4.02e-23 102
Msa0628810 MtrunA17_Chr4g0051181 51.667 60 28 1 186 244 244 303 1.14e-14 76.3
Msa0628810 MtrunA17_Chr3g0129321 54.667 75 34 0 323 397 104 178 4.53e-23 97.1
Msa0628810 MtrunA17_Chr3g0129321 51.667 60 29 0 185 244 118 177 1.08e-14 72.8
Msa0628810 MtrunA17_Chr4g0075201 53.165 79 36 1 319 396 249 327 6.09e-23 101
Msa0628810 MtrunA17_Chr4g0075201 46.667 60 31 1 186 244 268 327 3.52e-13 71.6
Msa0628810 MtrunA17_Chr2g0322391 53.165 79 36 1 319 396 331 409 1.16e-22 101
Msa0628810 MtrunA17_Chr2g0322391 45.000 60 32 1 186 244 350 409 2.04e-11 66.2
Msa0628810 MtrunA17_Chr4g0060271 50.633 79 38 1 320 397 238 316 1.50e-22 101
Msa0628810 MtrunA17_Chr4g0060271 48.333 60 30 1 186 244 256 315 6.85e-13 70.9
Msa0628810 MtrunA17_Chr5g0432071 48.077 104 51 3 178 279 97 199 1.80e-22 95.5
Msa0628810 MtrunA17_Chr5g0432071 53.333 60 27 1 337 396 104 162 1.88e-13 69.3
Msa0628810 MtrunA17_Chr4g0068541 54.545 77 35 0 321 397 192 268 4.82e-22 98.2
Msa0628810 MtrunA17_Chr4g0068541 50.000 76 37 1 185 260 208 282 9.32e-16 79.3
Msa0628810 MtrunA17_Chr7g0248721 57.895 76 31 1 318 393 122 196 8.67e-22 93.6
Msa0628810 MtrunA17_Chr7g0248721 55.172 58 25 1 185 242 141 197 4.00e-14 71.6
Msa0628810 MtrunA17_Chr1g0189391 47.619 105 53 2 291 393 50 154 1.31e-21 95.9
Msa0628810 MtrunA17_Chr1g0189391 50.000 58 28 1 185 241 97 154 5.94e-12 67.0
Msa0628810 MtrunA17_Chr2g0333851 42.735 117 52 4 314 425 144 250 3.90e-21 94.0
Msa0628810 MtrunA17_Chr2g0333851 50.820 61 29 1 185 244 169 229 5.00e-16 79.0
Msa0628810 MtrunA17_Chr4g0053281 50.633 79 35 2 318 395 250 325 9.78e-21 93.2
Msa0628810 MtrunA17_Chr4g0053281 52.632 57 26 1 186 241 267 323 4.48e-14 73.6
Msa0628810 MtrunA17_Chr6g0485431 53.947 76 34 1 323 397 140 215 1.14e-20 93.6
Msa0628810 MtrunA17_Chr6g0485431 47.692 65 33 1 186 249 155 219 8.77e-15 75.9
Msa0628810 MtrunA17_Chr7g0216891 50.649 77 37 1 320 395 202 278 1.53e-20 94.7
Msa0628810 MtrunA17_Chr7g0216891 51.724 58 27 1 186 242 220 277 6.47e-14 74.3
Msa0628810 MtrunA17_Chr1g0147881 53.165 79 33 2 318 395 246 321 1.90e-20 92.4
Msa0628810 MtrunA17_Chr1g0147881 50.877 57 27 1 186 241 263 319 8.82e-12 66.6
Msa0628810 MtrunA17_Chr4g0025061 50.633 79 38 1 319 396 342 420 2.36e-20 94.4
Msa0628810 MtrunA17_Chr4g0025061 42.667 75 38 2 182 251 353 427 9.63e-12 67.4
Msa0628810 MtrunA17_Chr2g0302391 50.000 82 37 2 316 396 193 271 2.56e-20 93.2
Msa0628810 MtrunA17_Chr2g0302391 42.647 68 38 1 186 252 212 279 9.50e-12 67.0
Msa0628810 MtrunA17_Chr5g0401821 50.617 81 39 1 318 397 180 260 5.12e-20 90.1
Msa0628810 MtrunA17_Chr5g0401821 52.632 57 26 1 186 241 200 256 2.05e-13 70.5
Msa0628810 MtrunA17_Chr3g0136961 35.570 149 73 4 263 393 52 195 4.77e-19 87.4
Msa0628810 MtrunA17_Chr3g0136961 48.276 58 29 1 185 241 138 195 1.25e-13 71.6
Msa0628810 MtrunA17_Chr4g0025051 51.351 74 35 1 324 396 322 395 1.35e-18 89.0
Msa0628810 MtrunA17_Chr1g0184691 49.351 77 35 2 318 393 277 350 1.01e-17 84.7
Msa0628810 MtrunA17_Chr1g0184691 50.847 59 28 1 186 243 294 352 4.20e-13 70.9
Msa0628810 MtrunA17_Chr4g0071521 49.351 77 35 2 318 393 229 302 1.14e-17 84.0
Msa0628810 MtrunA17_Chr4g0071521 41.333 75 39 2 186 259 246 316 6.80e-11 63.5
Msa0628810 MtrunA17_Chr7g0238921 61.404 57 22 0 185 241 124 180 1.97e-17 83.2
Msa0628810 MtrunA17_Chr7g0238921 59.649 57 23 0 337 393 124 180 2.68e-17 82.8
Msa0628810 MtrunA17_Chr4g0001361 42.000 100 48 3 335 427 160 256 4.78e-17 82.0
Msa0628810 MtrunA17_Chr4g0001361 38.000 100 60 2 185 282 162 261 1.23e-15 77.8
Msa0628810 MtrunA17_Chr1g0150271 33.742 163 81 5 325 460 89 251 6.20e-17 80.5
Msa0628810 MtrunA17_Chr1g0150271 44.262 61 33 1 185 244 101 161 1.37e-11 64.7
Msa0628810 MtrunA17_Chr1g0150281 41.304 92 48 3 308 393 106 197 1.25e-16 80.5
Msa0628810 MtrunA17_Chr1g0150281 47.368 57 29 1 186 241 141 197 1.03e-12 68.6
Msa0628810 MtrunA17_Chr8g0379461 31.034 145 68 3 338 457 77 214 8.20e-16 77.0
Msa0628810 MtrunA17_Chr8g0379461 42.466 73 41 1 173 244 64 136 3.52e-11 63.5
Msa0628810 MtrunA17_Chr4g0024391 43.750 80 42 2 319 397 211 288 2.45e-15 78.6
Msa0628810 MtrunA17_Chr3g0139021 43.590 78 43 1 318 394 295 372 4.63e-15 77.0
Msa0628810 MtrunA17_Chr7g0270051 48.387 62 31 1 338 398 54 115 1.01e-14 74.3
Msa0628810 MtrunA17_Chr7g0270051 42.391 92 50 2 172 262 40 129 2.59e-14 73.2
Msa0628810 MtrunA17_Chr2g0319961 50.794 63 30 1 338 399 81 143 1.90e-14 73.6
Msa0628810 MtrunA17_Chr7g0228941 45.455 77 39 2 318 393 35 109 2.32e-14 69.7
Msa0628810 MtrunA17_Chr7g0228941 45.614 57 30 1 186 241 53 109 2.40e-11 61.2
Msa0628810 MtrunA17_Chr8g0348311 42.857 91 41 3 338 427 156 236 3.47e-14 73.9
Msa0628810 MtrunA17_Chr8g0348311 32.039 103 69 1 143 244 113 215 3.29e-11 64.7
Msa0628810 MtrunA17_Chr1g0202461 35.577 104 64 3 318 419 243 345 5.50e-14 73.6
Msa0628810 MtrunA17_Chr1g0202461 45.000 60 32 1 186 244 262 321 1.21e-11 66.2
Msa0628810 MtrunA17_Chr2g0289181 48.485 66 33 1 332 396 9 74 9.17e-14 70.9
Msa0628810 MtrunA17_Chr2g0289181 46.154 65 34 1 185 248 14 78 1.14e-11 64.7
Msa0628810 MtrunA17_Chr8g0387501 50.000 62 30 1 336 396 128 189 1.03e-13 71.6
Msa0628810 MtrunA17_Chr8g0387501 46.667 60 31 1 186 244 130 189 2.75e-12 67.4
Msa0628810 MtrunA17_Chr7g0248691 44.737 76 41 1 338 412 155 230 1.15e-13 72.0
Msa0628810 MtrunA17_Chr2g0293481 47.059 68 34 2 330 396 261 327 1.75e-13 72.4
Msa0628810 MtrunA17_Chr2g0293481 49.254 67 31 2 186 251 268 332 3.12e-12 68.6
Msa0628810 MtrunA17_Chr2g0284321 50.000 60 29 1 338 396 36 95 2.89e-13 68.9
Msa0628810 MtrunA17_Chr6g0468181 64.151 53 18 1 201 253 18 69 5.81e-13 65.5
Msa0628810 MtrunA17_Chr1g0188961 70.000 40 12 0 357 396 3 42 1.58e-12 62.8
Msa0628810 MtrunA17_Chr4g0009881 50.000 66 31 2 180 245 12 75 8.74e-12 62.0
Msa0628810 MtrunA17_Chr1g0188971 62.500 40 15 0 318 357 43 82 1.46e-11 60.5
Msa0628810 MtrunA17_Chr8g0387981 50.000 58 26 1 185 239 132 189 1.49e-11 65.9
Msa0628810 MtrunA17_Chr8g0387981 48.276 58 27 1 337 391 132 189 8.06e-11 63.5
Msa0628810 MtrunA17_Chr3g0126391 47.458 59 28 1 336 391 132 190 2.43e-11 65.1
Msa0628810 MtrunA17_Chr3g0126391 48.276 58 27 2 185 239 133 190 3.58e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628810 AT2G38470.1 44.444 459 147 17 56 460 64 468 3.20e-95 298
Msa0628810 AT5G07100.1 47.278 349 100 11 49 396 28 293 2.94e-84 263
Msa0628810 AT5G07100.1 40.860 93 44 1 323 404 92 184 2.11e-14 74.3
Msa0628810 AT1G13960.1 43.117 385 147 10 47 396 121 468 9.43e-81 260
Msa0628810 AT5G07100.2 62.500 216 44 6 182 396 21 200 4.44e-80 248
Msa0628810 AT5G07100.2 50.000 68 34 0 337 404 24 91 1.22e-13 70.5
Msa0628810 AT5G07100.4 62.500 216 44 6 182 396 21 200 4.44e-80 248
Msa0628810 AT5G07100.4 50.000 68 34 0 337 404 24 91 1.22e-13 70.5
Msa0628810 AT5G07100.5 62.500 216 44 6 182 396 21 200 4.44e-80 248
Msa0628810 AT5G07100.5 50.000 68 34 0 337 404 24 91 1.22e-13 70.5
Msa0628810 AT5G07100.3 62.500 216 44 6 182 396 21 200 4.44e-80 248
Msa0628810 AT5G07100.3 50.000 68 34 0 337 404 24 91 1.22e-13 70.5
Msa0628810 AT1G13960.2 55.510 245 77 5 182 396 73 315 9.38e-77 245
Msa0628810 AT2G03340.1 42.569 397 177 13 47 418 124 494 1.85e-76 249
Msa0628810 AT4G26640.7 40.342 409 172 13 52 405 16 407 5.07e-76 248
Msa0628810 AT4G26640.2 39.756 410 177 12 52 406 56 450 1.33e-75 248
Msa0628810 AT4G26640.5 53.942 241 91 5 185 406 35 274 1.62e-75 243
Msa0628810 AT4G26640.5 53.226 62 28 1 335 396 33 93 1.06e-12 70.1
Msa0628810 AT4G26640.6 53.942 241 91 5 185 406 35 274 1.62e-75 243
Msa0628810 AT4G26640.6 53.226 62 28 1 335 396 33 93 1.06e-12 70.1
Msa0628810 AT4G26640.4 53.942 241 91 5 185 406 35 274 1.62e-75 243
Msa0628810 AT4G26640.4 53.226 62 28 1 335 396 33 93 1.06e-12 70.1
Msa0628810 AT4G26640.3 53.942 241 91 5 185 406 35 274 1.62e-75 243
Msa0628810 AT4G26640.3 53.226 62 28 1 335 396 33 93 1.06e-12 70.1
Msa0628810 AT4G26640.1 53.942 241 91 5 185 406 139 378 4.69e-75 244
Msa0628810 AT2G30250.1 55.263 228 78 5 186 396 167 387 2.64e-72 234
Msa0628810 AT2G30250.1 56.250 64 28 0 186 249 329 392 1.54e-16 82.0
Msa0628810 AT5G56270.1 48.936 282 72 8 185 399 273 549 1.28e-70 238
Msa0628810 AT3G01080.2 54.884 215 84 5 182 396 202 403 1.56e-65 219
Msa0628810 AT3G01080.1 54.884 215 84 5 182 396 164 365 2.69e-65 217
Msa0628810 AT4G26440.1 36.156 437 187 13 54 441 88 481 4.12e-64 218
Msa0628810 AT2G37260.2 43.600 250 105 3 182 397 80 327 7.51e-54 185
Msa0628810 AT2G37260.2 52.857 70 29 2 338 404 84 152 4.38e-13 70.9
Msa0628810 AT2G37260.3 43.600 250 105 3 182 397 82 329 7.67e-54 185
Msa0628810 AT2G04880.2 42.000 250 119 6 180 406 106 352 2.24e-53 187
Msa0628810 AT2G37260.1 43.600 250 105 3 182 397 162 409 2.81e-53 186
Msa0628810 AT2G04880.1 39.286 280 108 8 180 406 106 376 6.44e-51 181
Msa0628810 AT2G04880.1 43.000 100 45 2 186 285 308 395 2.91e-16 81.6
Msa0628810 AT4G30935.1 41.277 235 117 6 181 399 164 393 2.41e-44 162
Msa0628810 AT4G30935.1 41.667 96 49 1 186 281 332 420 6.13e-16 80.5
Msa0628810 AT4G12020.10 41.176 238 100 8 155 357 429 661 6.91e-37 145
Msa0628810 AT4G12020.3 41.176 238 100 8 155 357 429 661 7.32e-37 145
Msa0628810 AT4G12020.1 41.176 238 100 8 155 357 429 661 7.86e-37 145
Msa0628810 AT4G12020.9 41.176 238 100 8 155 357 429 661 7.86e-37 145
Msa0628810 AT4G12020.6 41.176 238 100 8 155 357 429 661 7.96e-37 145
Msa0628810 AT4G12020.8 41.176 238 100 8 155 357 429 661 7.96e-37 145
Msa0628810 AT4G12020.7 41.176 238 100 8 155 357 429 661 8.07e-37 145
Msa0628810 AT4G12020.2 41.176 238 100 8 155 357 429 661 9.07e-37 145
Msa0628810 AT4G12020.4 41.176 238 100 8 155 357 429 661 9.49e-37 145
Msa0628810 AT4G12020.5 41.176 238 100 8 155 357 362 594 9.57e-37 145
Msa0628810 AT4G12020.11 41.176 238 100 8 155 357 429 661 1.61e-36 144
Msa0628810 AT2G44745.1 46.847 111 58 1 283 393 92 201 3.38e-28 112
Msa0628810 AT2G44745.1 54.386 57 26 0 185 241 145 201 6.97e-15 74.3
Msa0628810 AT4G18170.1 63.158 76 28 0 321 396 156 231 1.02e-27 113
Msa0628810 AT4G18170.1 57.143 70 29 1 175 244 163 231 4.29e-18 85.5
Msa0628810 AT1G29860.1 64.474 76 27 0 321 396 120 195 2.22e-27 111
Msa0628810 AT1G29860.1 50.000 84 41 1 173 256 125 207 1.95e-19 89.0
Msa0628810 AT4G39410.1 63.158 76 28 0 318 393 204 279 2.66e-27 112
Msa0628810 AT4G39410.1 44.872 78 42 1 185 261 223 300 9.38e-16 78.6
Msa0628810 AT1G55600.1 61.728 81 31 0 316 396 286 366 4.08e-27 114
Msa0628810 AT1G55600.1 49.425 87 35 2 169 246 282 368 1.61e-18 88.6
Msa0628810 AT4G04450.2 43.846 130 65 3 319 447 180 302 4.63e-26 110
Msa0628810 AT4G04450.2 48.333 60 30 1 186 244 199 258 6.86e-14 73.9
Msa0628810 AT5G46350.1 52.128 94 39 1 323 410 169 262 8.18e-26 108
Msa0628810 AT5G46350.1 57.576 66 26 1 185 250 183 246 1.62e-17 84.0
Msa0628810 AT5G26170.1 60.000 70 28 0 324 393 100 169 1.17e-25 103
Msa0628810 AT5G26170.1 54.386 57 26 0 185 241 113 169 1.13e-15 75.5
Msa0628810 AT5G41570.1 59.211 76 31 0 318 393 79 154 1.83e-25 103
Msa0628810 AT5G41570.1 53.448 58 27 0 185 242 98 155 6.14e-16 76.3
Msa0628810 AT4G04450.1 43.846 130 65 3 319 447 274 396 2.02e-25 109
Msa0628810 AT4G04450.1 48.333 60 30 1 186 244 293 352 1.22e-13 73.6
Msa0628810 AT3G01970.1 62.500 72 27 0 324 395 52 123 3.19e-25 101
Msa0628810 AT3G01970.1 52.632 57 27 0 185 241 65 121 2.16e-14 70.9
Msa0628810 AT1G64000.1 56.962 79 34 0 315 393 92 170 3.23e-25 103
Msa0628810 AT1G64000.1 53.448 58 27 0 185 242 114 171 3.86e-16 77.4
Msa0628810 AT5G13080.1 49.000 100 43 1 304 395 26 125 4.19e-25 101
Msa0628810 AT5G13080.1 51.724 58 28 0 185 242 67 124 4.22e-15 72.8
Msa0628810 AT5G49520.1 58.442 77 32 0 321 397 205 281 7.23e-25 106
Msa0628810 AT5G49520.1 56.250 64 28 0 185 248 221 284 6.98e-18 85.9
Msa0628810 AT2G47260.1 58.442 77 32 0 321 397 158 234 8.97e-25 105
Msa0628810 AT2G47260.1 51.316 76 36 1 173 248 163 237 3.33e-16 80.1
Msa0628810 AT5G64810.1 59.155 71 29 0 324 394 97 167 1.85e-24 100
Msa0628810 AT5G64810.1 36.364 121 73 3 125 241 46 166 5.12e-15 73.9
Msa0628810 AT1G69310.4 56.579 76 33 0 318 393 128 203 2.08e-24 103
Msa0628810 AT1G69310.4 63.158 57 21 0 185 241 147 203 1.16e-17 84.0
Msa0628810 AT1G69310.2 56.579 76 33 0 318 393 128 203 2.08e-24 103
Msa0628810 AT1G69310.2 63.158 57 21 0 185 241 147 203 1.16e-17 84.0
Msa0628810 AT1G69310.1 56.579 76 33 0 318 393 128 203 2.08e-24 103
Msa0628810 AT1G69310.1 63.158 57 21 0 185 241 147 203 1.16e-17 84.0
Msa0628810 AT5G15130.2 53.165 79 36 1 320 397 168 246 1.30e-23 104
Msa0628810 AT5G15130.2 48.333 60 30 1 186 244 186 245 2.53e-12 69.3
Msa0628810 AT5G15130.1 54.430 79 35 1 320 397 210 288 1.80e-23 103
Msa0628810 AT5G15130.1 48.333 60 30 1 186 244 228 287 3.02e-12 69.3
Msa0628810 AT1G62300.1 54.430 79 35 1 319 396 294 372 3.18e-23 103
Msa0628810 AT1G62300.1 40.206 97 47 5 157 244 278 372 4.14e-13 72.0
Msa0628810 AT1G68150.1 51.899 79 37 1 321 398 219 297 5.11e-23 100
Msa0628810 AT1G68150.1 51.667 60 28 1 186 244 236 295 1.93e-14 75.5
Msa0628810 AT4G22070.4 54.430 79 35 1 319 396 279 357 5.36e-23 102
Msa0628810 AT4G22070.4 48.333 60 30 1 186 244 298 357 1.58e-12 70.1
Msa0628810 AT4G22070.3 54.430 79 35 1 319 396 279 357 5.36e-23 102
Msa0628810 AT4G22070.3 48.333 60 30 1 186 244 298 357 1.58e-12 70.1
Msa0628810 AT4G22070.2 54.430 79 35 1 319 396 279 357 5.36e-23 102
Msa0628810 AT4G22070.2 48.333 60 30 1 186 244 298 357 1.58e-12 70.1
Msa0628810 AT4G22070.1 54.430 79 35 1 319 396 279 357 5.36e-23 102
Msa0628810 AT4G22070.1 48.333 60 30 1 186 244 298 357 1.58e-12 70.1
Msa0628810 AT2G46130.1 55.263 76 34 0 318 393 11 86 1.19e-22 93.2
Msa0628810 AT2G46130.1 55.172 58 26 0 185 242 30 87 3.32e-17 77.8
Msa0628810 AT3G01080.3 67.188 64 20 1 182 245 202 264 5.39e-22 97.1
Msa0628810 AT3G01080.3 53.333 60 27 1 337 396 205 263 4.75e-13 70.5
Msa0628810 AT1G18860.1 52.564 78 36 1 320 396 222 299 5.58e-22 99.4
Msa0628810 AT1G18860.1 48.333 60 30 1 186 244 240 299 8.45e-12 67.8
Msa0628810 AT3G62340.1 57.143 77 33 0 321 397 102 178 1.15e-21 95.1
Msa0628810 AT3G62340.1 47.826 69 36 0 185 253 118 186 1.36e-15 77.4
Msa0628810 AT4G31550.1 51.087 92 40 3 318 407 230 318 4.93e-21 94.4
Msa0628810 AT4G31550.1 52.632 57 26 1 186 241 247 303 1.07e-12 69.7
Msa0628810 AT4G31550.2 51.087 92 40 3 318 407 229 317 4.95e-21 94.4
Msa0628810 AT4G31550.2 52.632 57 26 1 186 241 246 302 1.02e-12 69.7
Msa0628810 AT4G01720.1 51.948 77 36 1 321 396 223 299 1.05e-20 95.5
Msa0628810 AT4G01720.1 35.577 104 64 2 142 244 198 299 3.68e-14 75.1
Msa0628810 AT2G23320.1 50.633 79 35 2 318 395 224 299 1.55e-20 92.8
Msa0628810 AT2G23320.1 50.877 57 27 1 186 241 241 297 6.21e-13 70.1
Msa0628810 AT4G24240.1 53.333 75 34 1 324 397 268 342 4.04e-20 92.0
Msa0628810 AT1G69310.3 52.632 76 32 1 318 393 128 199 9.60e-20 89.7
Msa0628810 AT1G69310.3 57.895 57 20 1 185 241 147 199 3.79e-13 70.5
Msa0628810 AT2G24570.1 54.545 77 31 2 318 393 227 300 2.26e-19 89.4
Msa0628810 AT2G24570.1 52.632 57 26 1 186 241 244 300 1.49e-12 68.9
Msa0628810 AT5G28650.1 50.649 77 34 2 318 393 246 319 4.72e-19 88.6
Msa0628810 AT5G28650.1 47.368 57 29 1 186 241 263 319 3.08e-11 65.1
Msa0628810 AT5G43290.1 63.158 57 21 0 185 241 114 170 7.96e-19 87.0
Msa0628810 AT5G43290.1 55.932 59 26 0 335 393 112 170 1.28e-15 77.4
Msa0628810 AT2G21900.1 45.055 91 47 1 326 413 95 185 9.93e-19 85.1
Msa0628810 AT2G21900.1 45.455 66 36 0 179 244 103 168 5.60e-16 77.0
Msa0628810 AT3G04670.1 50.649 77 34 2 318 393 246 319 1.51e-18 87.0
Msa0628810 AT3G04670.1 49.123 57 28 1 186 241 263 319 6.64e-12 67.0
Msa0628810 AT1G80840.1 48.684 76 35 3 335 408 144 217 2.85e-18 85.9
Msa0628810 AT1G80840.1 50.820 61 29 1 185 244 146 206 1.24e-15 78.2
Msa0628810 AT2G30590.1 36.000 150 81 4 259 393 221 370 4.71e-18 86.3
Msa0628810 AT2G30590.1 50.847 59 28 1 186 243 314 372 9.80e-13 70.1
Msa0628810 AT2G46130.2 51.316 76 33 1 318 393 11 82 4.76e-18 80.1
Msa0628810 AT2G46130.2 50.000 58 25 1 185 242 30 83 1.11e-12 64.7
Msa0628810 AT1G69810.2 35.659 129 67 3 285 397 79 207 2.48e-17 83.6
Msa0628810 AT1G69810.1 35.659 129 67 3 285 397 137 265 3.62e-17 83.6
Msa0628810 AT2G25000.2 50.000 62 30 1 336 396 102 163 1.08e-16 79.7
Msa0628810 AT2G25000.2 37.500 88 49 2 164 250 87 169 1.26e-13 70.9
Msa0628810 AT2G25000.4 50.000 62 30 1 336 396 102 163 1.08e-16 79.7
Msa0628810 AT2G25000.4 37.500 88 49 2 164 250 87 169 1.26e-13 70.9
Msa0628810 AT4G23550.1 47.222 72 37 1 326 396 129 200 1.51e-16 80.9
Msa0628810 AT2G25000.3 50.000 62 30 1 336 396 124 185 1.85e-16 79.7
Msa0628810 AT2G25000.3 37.931 87 48 2 165 250 110 191 1.53e-13 70.9
Msa0628810 AT4G31800.2 50.000 62 30 1 336 396 110 171 2.46e-16 79.0
Msa0628810 AT4G31800.2 42.254 71 40 1 185 254 111 181 7.45e-14 71.6
Msa0628810 AT2G25000.1 50.000 62 30 1 336 396 145 206 3.02e-16 79.3
Msa0628810 AT2G25000.1 37.931 87 48 2 165 250 131 212 2.99e-13 70.5
Msa0628810 AT4G31800.1 50.000 62 30 1 336 396 175 236 3.62e-16 79.7
Msa0628810 AT4G31800.1 42.254 71 40 1 185 254 176 246 1.17e-13 72.4
Msa0628810 AT1G29280.1 50.820 61 29 1 338 397 75 135 6.01e-15 75.1
Msa0628810 AT1G29280.1 33.858 127 54 3 154 250 14 140 1.39e-13 71.2
Msa0628810 AT4G01250.1 53.333 60 27 1 338 396 129 188 1.34e-14 75.1
Msa0628810 AT4G01250.1 37.500 88 41 2 171 244 101 188 3.48e-12 67.8
Msa0628810 AT5G52830.1 36.975 119 63 4 318 434 147 255 2.42e-14 74.7
Msa0628810 AT5G52830.1 48.333 60 30 1 186 244 166 225 2.86e-11 65.5
Msa0628810 AT2G34830.1 41.026 78 45 1 320 396 198 275 1.90e-13 72.8
Msa0628810 AT2G34830.1 44.444 81 42 2 172 251 202 280 1.72e-12 69.7
Msa0628810 AT1G30650.1 40.506 79 46 1 320 397 200 278 1.95e-13 72.8
Msa0628810 AT1G30650.1 44.595 74 40 1 172 244 204 277 4.62e-12 68.2
Msa0628810 AT2G34830.2 41.026 78 45 1 320 396 207 284 1.98e-13 72.8
Msa0628810 AT2G34830.2 44.444 81 42 2 172 251 211 289 1.59e-12 69.7
Msa0628810 AT3G58710.1 44.286 70 38 1 328 396 62 131 8.18e-13 69.3
Msa0628810 AT3G58710.1 48.333 60 30 1 186 244 72 131 7.72e-11 63.2
Msa0628810 AT3G58710.2 44.286 70 38 1 328 396 61 130 8.71e-13 68.9
Msa0628810 AT3G58710.2 48.333 60 30 1 186 244 71 130 8.08e-11 63.2
Msa0628810 AT5G45050.2 44.578 83 32 3 321 396 1137 1212 1.01e-11 68.2
Msa0628810 AT5G45050.1 44.578 83 32 3 321 396 1165 1240 1.08e-11 68.2
Msa0628810 AT5G45050.4 44.578 83 32 3 321 396 1026 1101 1.09e-11 68.2
Msa0628810 AT5G45260.1 42.683 82 42 2 184 262 1207 1286 1.34e-11 67.8
Msa0628810 AT5G24110.1 31.690 142 87 6 324 457 99 238 4.24e-11 64.3

Find 67 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCTTCTGATATTTCTT+TGG 0.193955 4_3:-9517508 Msa0628810:CDS
TTCTTCTTCATTGAGCAAAT+TGG 0.201399 4_3:+9517669 None:intergenic
GTGCACTTGTAATAACTTCT+TGG 0.242130 4_3:+9517696 None:intergenic
GTTCCTTCAAATGATAAATT+TGG 0.257363 4_3:+9517876 None:intergenic
TTGTTAAAATAACTAGAATT+AGG 0.275940 4_3:+9517819 None:intergenic
GAAGAAAGTTGAAAGGTCTT+TGG 0.287157 4_3:-9517652 Msa0628810:CDS
GTACTGATCTTACCATCTTT+TGG 0.288931 4_3:+9517413 None:intergenic
ATGGCTTCTGATATTTCTTT+GGG 0.307243 4_3:-9517507 Msa0628810:CDS
GGATATAGGTGGAGGAAATA+TGG 0.321679 4_3:-9517071 Msa0628810:CDS
TTCATCATGCAACAACTCTA+TGG 0.324697 4_3:-9517526 Msa0628810:CDS
GGATACAGGTGGAGAAAATA+TGG 0.326573 4_3:-9517747 Msa0628810:CDS
GTCACTGCTGAAGGCCTTAT+AGG 0.327921 4_3:+9516582 None:intergenic
TATGGACAGAAAGTAGTTAA+AGG 0.332389 4_3:-9517053 Msa0628810:CDS
CTGATGCTTTGCACAGTAGA+AGG 0.348947 4_3:+9518706 None:intergenic
TTATTTACATACCTTGGGTT+TGG 0.350671 4_3:+9517026 None:intergenic
CAACCAAATTTATCATTTGA+AGG 0.369792 4_3:-9517879 Msa0628810:CDS
AGCCGAGTATTGTTCCGAAT+TGG 0.406866 4_3:+9516422 None:intergenic
ATTACTCAAATAGTATATAA+AGG 0.407318 4_3:-9517618 Msa0628810:CDS
CTAATTCCTTGCTATGCTGT+TGG 0.408497 4_3:+9518683 None:intergenic
TTCTGATATTTCTTTGGGAG+AGG 0.411159 4_3:-9517502 Msa0628810:CDS
AATGTGTCATGTGTCTTTAG+TGG 0.415250 4_3:+9517924 None:intergenic
ATATTCTTGATGATGGATAT+AGG 0.416334 4_3:-9517085 Msa0628810:CDS
AATTGGTTCAAATACCAATT+CGG 0.428619 4_3:-9516436 Msa0628810:CDS
GTTGAAAGGTCTTTGGATGA+TGG 0.432736 4_3:-9517645 Msa0628810:CDS
CATGTAATGTTACACCTATA+AGG 0.432770 4_3:-9516596 Msa0628810:CDS
GAAATTGATATTCTTGATGA+TGG 0.452886 4_3:-9517092 Msa0628810:CDS
TGTAACATTACATGTATTGT+TGG 0.459718 4_3:+9516605 None:intergenic
TACATTAGAAGAAGAAAGAA+AGG 0.465181 4_3:+9519115 None:intergenic
TGGAGGAGATTATGATGACT+TGG 0.466240 4_3:-9517445 Msa0628810:CDS
TTAGAAGAAGAAAGAAAGGA+AGG 0.477240 4_3:+9519119 None:intergenic
AGAAGGGTGTAGAACTGTTA+AGG 0.478856 4_3:-9517144 Msa0628810:CDS
GGTGATGTTATTGTTTGTGT+TGG 0.478952 4_3:+9519283 None:intergenic
TTATGATGACTTGGGAATAG+AGG 0.481749 4_3:-9517436 Msa0628810:CDS
AACAAATTTATCAATATCCA+AGG 0.482574 4_3:+9519259 None:intergenic
CAAAGAAAATCAGAAGAAGA+TGG 0.492604 4_3:-9517768 Msa0628810:CDS
AATCAGAAGAAGATGGATAC+AGG 0.502233 4_3:-9517761 Msa0628810:CDS
CATGATGTACCTCTAGGAAA+AGG 0.502357 4_3:-9516663 Msa0628810:CDS
GTAGTTTGAACCACAACTCT+AGG 0.508298 4_3:+9517119 None:intergenic
TACCAATTCGGAACAATACT+CGG 0.514905 4_3:-9516424 Msa0628810:CDS
AGCTATTCTTATTCCACAGA+AGG 0.516161 4_3:-9517161 Msa0628810:CDS
GGAGGAGATTATGATGACTT+GGG 0.531440 4_3:-9517444 Msa0628810:CDS
GCAGTGATCACAACATATGA+AGG 0.534270 4_3:-9516696 Msa0628810:CDS
TTCCACAAGTATGTTTCAAG+TGG 0.546004 4_3:-9518593 Msa0628810:intron
GGTGGAAAATCAGAATAAGA+AGG 0.553596 4_3:+9519173 None:intergenic
AAACAATAACATCACCACCT+TGG 0.561789 4_3:-9519276 Msa0628810:CDS
TTGTACACTGAGGCTTAGGA+TGG 0.563371 4_3:+9517586 None:intergenic
GAATAATTAGTCACTGCTGA+AGG 0.572182 4_3:+9516573 None:intergenic
TATGGAGAGAAACAAGTGAA+AGG 0.574260 4_3:-9517729 Msa0628810:CDS
GGTGAATGCAATAACTCAGA+TGG 0.576209 4_3:+9519140 None:intergenic
TACCACTTGAAACATACTTG+TGG 0.577939 4_3:+9518591 None:intergenic
TTGATGATGGATATAGGTGG+AGG 0.585484 4_3:-9517079 Msa0628810:CDS
TGGGAATAGAGGCCAAAAGA+TGG 0.587508 4_3:-9517425 Msa0628810:intron
CATAACCATGATGTACCTCT+AGG 0.588202 4_3:-9516669 Msa0628810:CDS
AACAGTTCTACACCCTTCTG+TGG 0.594037 4_3:+9517148 None:intergenic
TACTACAAATGTGTAATCCA+AGG 0.596332 4_3:-9516765 Msa0628810:CDS
GCTATTCTTATTCCACAGAA+GGG 0.600897 4_3:-9517160 Msa0628810:CDS
AACTCAGATGGACTGAAACC+AGG 0.615499 4_3:+9519152 None:intergenic
CATCAGCCAACAGCATAGCA+AGG 0.634481 4_3:-9518689 Msa0628810:CDS
CAATGAAGAAGAAAGTTGAA+AGG 0.635399 4_3:-9517659 Msa0628810:CDS
TTAAAGGAAATCCAAACCCA+AGG 0.636841 4_3:-9517037 Msa0628810:intron
TGTTAAGGAACCTAGAGTTG+TGG 0.637272 4_3:-9517129 Msa0628810:CDS
CAGAAGAAGATGGATACAGG+TGG 0.640643 4_3:-9517758 Msa0628810:CDS
GAGTTGTTGCATGATGAAGA+AGG 0.644778 4_3:+9517531 None:intergenic
AGATTGAAAGAGATCATGCA+TGG 0.650797 4_3:+9518615 None:intergenic
TTCTTGATGATGGATATAGG+TGG 0.671599 4_3:-9517082 Msa0628810:CDS
AAATTTATCAATATCCAAGG+TGG 0.694733 4_3:+9519262 None:intergenic
TCAGATGGACTGAAACCAGG+TGG 0.709334 4_3:+9519155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAAATAATTCAAATTA+TGG - chr4_3:9518674-9518693 Msa0628810:CDS 10.0%
!! TAAATGATATAATATACTAA+CGG - chr4_3:9518741-9518760 Msa0628810:intron 10.0%
!!! TTAATCATGATTTTAAATTG+CGG - chr4_3:9516635-9516654 Msa0628810:CDS 15.0%
!!! TTTGTTTTAAGTAAAAGTTA+TGG + chr4_3:9517141-9517160 None:intergenic 15.0%
!! TTTCATTAATGATAATATGT+TGG - chr4_3:9517497-9517516 Msa0628810:CDS 15.0%
!! TTGTTAAAATAACTAGAATT+AGG + chr4_3:9517872-9517891 None:intergenic 15.0%
!! ATTACTCAAATAGTATATAA+AGG - chr4_3:9518070-9518089 Msa0628810:intron 15.0%
!!! TTTTAGATTCATTCAATAAA+TGG - chr4_3:9518332-9518351 Msa0628810:intron 15.0%
!! TTTCTATAACTATAACTAAA+TGG + chr4_3:9518713-9518732 None:intergenic 15.0%
!! AACAAATTTATCAATATCCA+AGG + chr4_3:9516432-9516451 None:intergenic 20.0%
!!! TAATCATGATTTTAAATTGC+GGG - chr4_3:9516636-9516655 Msa0628810:CDS 20.0%
!!! AAACATTTTTAAAGTTGATG+TGG - chr4_3:9517442-9517461 Msa0628810:CDS 20.0%
!! TCATTAATGAAATGCAATTA+AGG + chr4_3:9517489-9517508 None:intergenic 20.0%
!! TTTATGATTCTCATTATTGT+AGG - chr4_3:9518483-9518502 Msa0628810:intron 20.0%
!! TTGAATTATTTACATACCTT+GGG + chr4_3:9518670-9518689 None:intergenic 20.0%
!! TTTGAATTATTTACATACCT+TGG + chr4_3:9518671-9518690 None:intergenic 20.0%
!! GAACAAGTTATTATCATATA+GGG + chr4_3:9518880-9518899 None:intergenic 20.0%
!! TGAACAAGTTATTATCATAT+AGG + chr4_3:9518881-9518900 None:intergenic 20.0%
!!! TTCAAAATATTTATTTCTGC+AGG - chr4_3:9518897-9518916 Msa0628810:intron 20.0%
! AAATTTATCAATATCCAAGG+TGG + chr4_3:9516429-9516448 None:intergenic 25.0%
! TACATTAGAAGAAGAAAGAA+AGG + chr4_3:9516576-9516595 None:intergenic 25.0%
!! CGTATTTTGTCACAATATAA+AGG + chr4_3:9516679-9516698 None:intergenic 25.0%
!! TCGTAATATAAAGGATTTTG+AGG + chr4_3:9516743-9516762 None:intergenic 25.0%
! AAATTGCAGTCGTAATATAA+AGG + chr4_3:9516752-9516771 None:intergenic 25.0%
!! CAAGATAGTTTGAATAGTTT+TGG - chr4_3:9517341-9517360 Msa0628810:intron 25.0%
! AATAAATCACACATTGTTTG+TGG + chr4_3:9517680-9517699 None:intergenic 25.0%
! CAACCAAATTTATCATTTGA+AGG - chr4_3:9517809-9517828 Msa0628810:CDS 25.0%
! GTTCCTTCAAATGATAAATT+TGG + chr4_3:9517815-9517834 None:intergenic 25.0%
!!! TCTAGTTATTTTAACAACAC+TGG - chr4_3:9517875-9517894 Msa0628810:CDS 25.0%
!! AAAAACTAGTTTGTGATGTT+TGG + chr4_3:9518222-9518241 None:intergenic 25.0%
! CATTCAATAAATGGTATATG+TGG - chr4_3:9518341-9518360 Msa0628810:intron 25.0%
!!! ATGAAGTACCAATATTTTTG+AGG - chr4_3:9518441-9518460 Msa0628810:intron 25.0%
! GAAATCAACCTCAAAAATAT+TGG + chr4_3:9518452-9518471 None:intergenic 25.0%
! GAAATTGATATTCTTGATGA+TGG - chr4_3:9518596-9518615 Msa0628810:CDS 25.0%
!!! ATATTCTTGATGATGGATAT+AGG - chr4_3:9518603-9518622 Msa0628810:CDS 25.0%
! AAGTTATTATCATATAGGGT+TGG + chr4_3:9518876-9518895 None:intergenic 25.0%
! TGTAACATTACATGTATTGT+TGG + chr4_3:9519086-9519105 None:intergenic 25.0%
!! AATTGGTTCAAATACCAATT+CGG - chr4_3:9519252-9519271 Msa0628810:CDS 25.0%
TTAGAAGAAGAAAGAAAGGA+AGG + chr4_3:9516572-9516591 None:intergenic 30.0%
! ATGATTTTAAATTGCGGGTA+TGG - chr4_3:9516641-9516660 Msa0628810:CDS 30.0%
! TCTTTTGCAACTTTTAGTGT+TGG - chr4_3:9516874-9516893 Msa0628810:intron 30.0%
!! TGTTTTTGTGTTTGGAAAGA+GGG + chr4_3:9517051-9517070 None:intergenic 30.0%
TTGATGTGGCTAACATTAAA+CGG - chr4_3:9517456-9517475 Msa0628810:CDS 30.0%
TGTGTGATTTATTGATGCTT+TGG - chr4_3:9517687-9517706 Msa0628810:CDS 30.0%
AATACTTGTTCAACTTGAAC+AGG - chr4_3:9517736-9517755 Msa0628810:CDS 30.0%
CAAAGAAAATCAGAAGAAGA+TGG - chr4_3:9517920-9517939 Msa0628810:CDS 30.0%
TTCTTCTTCATTGAGCAAAT+TGG + chr4_3:9518022-9518041 None:intergenic 30.0%
CAATGAAGAAGAAAGTTGAA+AGG - chr4_3:9518029-9518048 Msa0628810:intron 30.0%
TATGGCTTCTGATATTTCTT+TGG - chr4_3:9518180-9518199 Msa0628810:intron 30.0%
ATGGCTTCTGATATTTCTTT+GGG - chr4_3:9518181-9518200 Msa0628810:intron 30.0%
!!! ACATCACAAACTAGTTTTTC+TGG - chr4_3:9518223-9518242 Msa0628810:intron 30.0%
TGCTTATAATAGTGACCATA+GGG + chr4_3:9518302-9518321 None:intergenic 30.0%
TTGCTTATAATAGTGACCAT+AGG + chr4_3:9518303-9518322 None:intergenic 30.0%
GATTCTCATTATTGTAGGAA+AGG - chr4_3:9518488-9518507 Msa0628810:intron 30.0%
TATGGACAGAAAGTAGTTAA+AGG - chr4_3:9518635-9518654 Msa0628810:CDS 30.0%
TTATTTACATACCTTGGGTT+TGG + chr4_3:9518665-9518684 None:intergenic 30.0%
AATCGTGCACAAATCTTAAA+CGG - chr4_3:9518796-9518815 Msa0628810:intron 30.0%
!!! CGGCTATTATTTTTAGACAA+AGG - chr4_3:9518816-9518835 Msa0628810:intron 30.0%
!! ACAAAGGAAGTACTTAACTT+TGG - chr4_3:9518832-9518851 Msa0628810:intron 30.0%
TACTACAAATGTGTAATCCA+AGG - chr4_3:9518923-9518942 Msa0628810:intron 30.0%
CATGTAATGTTACACCTATA+AGG - chr4_3:9519092-9519111 Msa0628810:intron 30.0%
! TGTTCTTGATTTTCAGAAGT+TGG + chr4_3:9519184-9519203 None:intergenic 30.0%
!! GATGAATTCTAGAAGCTTTT+TGG - chr4_3:9519222-9519241 Msa0628810:CDS 30.0%
GGTGATGTTATTGTTTGTGT+TGG + chr4_3:9516408-9516427 None:intergenic 35.0%
AAACAATAACATCACCACCT+TGG - chr4_3:9516412-9516431 Msa0628810:CDS 35.0%
GGTGGAAAATCAGAATAAGA+AGG + chr4_3:9516518-9516537 None:intergenic 35.0%
! TCTTATTCTGATTTTCCACC+TGG - chr4_3:9516518-9516537 Msa0628810:CDS 35.0%
ACGACTGCAATTTCAAATGA+TGG - chr4_3:9516759-9516778 Msa0628810:CDS 35.0%
TCAAATGCAACTTATGCATG+TGG - chr4_3:9516813-9516832 Msa0628810:intron 35.0%
!!! GCAACTTTTAGTGTTGGTTT+TGG - chr4_3:9516880-9516899 Msa0628810:intron 35.0%
!!! CTGTTTTTGTGTTTGGAAAG+AGG + chr4_3:9517052-9517071 None:intergenic 35.0%
AGATTGAAAGAGATCATGCA+TGG + chr4_3:9517076-9517095 None:intergenic 35.0%
TTCCACAAGTATGTTTCAAG+TGG - chr4_3:9517095-9517114 Msa0628810:CDS 35.0%
TACCACTTGAAACATACTTG+TGG + chr4_3:9517100-9517119 None:intergenic 35.0%
TATGCTGATCTTGACTTTCT+TGG - chr4_3:9517189-9517208 Msa0628810:intron 35.0%
TGTCACACACTTGCATTTAA+TGG - chr4_3:9517240-9517259 Msa0628810:intron 35.0%
! ATGTTTGACTTAGTCAACTG+AGG + chr4_3:9517393-9517412 None:intergenic 35.0%
AATGTGTCATGTGTCTTTAG+TGG + chr4_3:9517767-9517786 None:intergenic 35.0%
AATCAGAAGAAGATGGATAC+AGG - chr4_3:9517927-9517946 Msa0628810:CDS 35.0%
TATGGAGAGAAACAAGTGAA+AGG - chr4_3:9517959-9517978 Msa0628810:intron 35.0%
GTGCACTTGTAATAACTTCT+TGG + chr4_3:9517995-9518014 None:intergenic 35.0%
GAAGAAAGTTGAAAGGTCTT+TGG - chr4_3:9518036-9518055 Msa0628810:intron 35.0%
TTCATCATGCAACAACTCTA+TGG - chr4_3:9518162-9518181 Msa0628810:intron 35.0%
! TTCTGATATTTCTTTGGGAG+AGG - chr4_3:9518186-9518205 Msa0628810:intron 35.0%
!!! TCACAAACTAGTTTTTCTGG+AGG - chr4_3:9518226-9518245 Msa0628810:intron 35.0%
! TTATGATGACTTGGGAATAG+AGG - chr4_3:9518252-9518271 Msa0628810:intron 35.0%
!! GTACTGATCTTACCATCTTT+TGG + chr4_3:9518278-9518297 None:intergenic 35.0%
TTATAACATAGTCCACACTC+TGG - chr4_3:9518365-9518384 Msa0628810:intron 35.0%
CACTATTATAAACCAGAGTG+TGG + chr4_3:9518380-9518399 None:intergenic 35.0%
! CTCTGGTTTATAATAGTGAC+CGG - chr4_3:9518382-9518401 Msa0628810:intron 35.0%
AGCTATTCTTATTCCACAGA+AGG - chr4_3:9518527-9518546 Msa0628810:intron 35.0%
GCTATTCTTATTCCACAGAA+GGG - chr4_3:9518528-9518547 Msa0628810:intron 35.0%
!! TTCTTGATGATGGATATAGG+TGG - chr4_3:9518606-9518625 Msa0628810:CDS 35.0%
TTAAAGGAAATCCAAACCCA+AGG - chr4_3:9518651-9518670 Msa0628810:CDS 35.0%
! CTTGAAATTCCTTTTCCTAG+AGG + chr4_3:9519037-9519056 None:intergenic 35.0%
GAATAATTAGTCACTGCTGA+AGG + chr4_3:9519118-9519137 None:intergenic 35.0%
! AGCTTTTTGGACAGATCAAT+TGG - chr4_3:9519235-9519254 Msa0628810:CDS 35.0%
TACCAATTCGGAACAATACT+CGG - chr4_3:9519264-9519283 Msa0628810:CDS 35.0%
GGTGAATGCAATAACTCAGA+TGG + chr4_3:9516551-9516570 None:intergenic 40.0%
! CTAATTCCTTGCTATGCTGT+TGG + chr4_3:9517008-9517027 None:intergenic 40.0%
!!! GCATGGTCTGTTTTTGTGTT+TGG + chr4_3:9517059-9517078 None:intergenic 40.0%
TAGAAGACAAGTCGATGAGA+CGG + chr4_3:9517593-9517612 None:intergenic 40.0%
GGATACAGGTGGAGAAAATA+TGG - chr4_3:9517941-9517960 Msa0628810:intron 40.0%
GTTGAAAGGTCTTTGGATGA+TGG - chr4_3:9518043-9518062 Msa0628810:intron 40.0%
! CTTTTTGTACACTGAGGCTT+AGG + chr4_3:9518109-9518128 None:intergenic 40.0%
! GCTCTTCTTTTTGTACACTG+AGG + chr4_3:9518115-9518134 None:intergenic 40.0%
GAGTTGTTGCATGATGAAGA+AGG + chr4_3:9518160-9518179 None:intergenic 40.0%
TGGAGGAGATTATGATGACT+TGG - chr4_3:9518243-9518262 Msa0628810:intron 40.0%
GGAGGAGATTATGATGACTT+GGG - chr4_3:9518244-9518263 Msa0628810:intron 40.0%
TGGTTTATAATAGTGACCGG+AGG - chr4_3:9518385-9518404 Msa0628810:intron 40.0%
GGTTTATAATAGTGACCGGA+GGG - chr4_3:9518386-9518405 Msa0628810:intron 40.0%
GCACAAAAAAATACACCCTC+CGG + chr4_3:9518404-9518423 None:intergenic 40.0%
! AGAAGGGTGTAGAACTGTTA+AGG - chr4_3:9518544-9518563 Msa0628810:intron 40.0%
TGTTAAGGAACCTAGAGTTG+TGG - chr4_3:9518559-9518578 Msa0628810:intron 40.0%
GTAGTTTGAACCACAACTCT+AGG + chr4_3:9518572-9518591 None:intergenic 40.0%
!! TTGATGATGGATATAGGTGG+AGG - chr4_3:9518609-9518628 Msa0628810:CDS 40.0%
GGATATAGGTGGAGGAAATA+TGG - chr4_3:9518617-9518636 Msa0628810:CDS 40.0%
! GTTTTCTCACAGTACAACCT+TGG + chr4_3:9518943-9518962 None:intergenic 40.0%
GCAGTGATCACAACATATGA+AGG - chr4_3:9518992-9519011 Msa0628810:intron 40.0%
CATAACCATGATGTACCTCT+AGG - chr4_3:9519019-9519038 Msa0628810:intron 40.0%
!! CTTTTCCTAGAGGTACATCA+TGG + chr4_3:9519027-9519046 None:intergenic 40.0%
! CATGATGTACCTCTAGGAAA+AGG - chr4_3:9519025-9519044 Msa0628810:intron 40.0%
!! AACTCAGATGGACTGAAACC+AGG + chr4_3:9516539-9516558 None:intergenic 45.0%
CTGATGCTTTGCACAGTAGA+AGG + chr4_3:9516985-9517004 None:intergenic 45.0%
CAGAAGAAGATGGATACAGG+TGG - chr4_3:9517930-9517949 Msa0628810:CDS 45.0%
TTGTACACTGAGGCTTAGGA+TGG + chr4_3:9518105-9518124 None:intergenic 45.0%
TGGGAATAGAGGCCAAAAGA+TGG - chr4_3:9518263-9518282 Msa0628810:intron 45.0%
AACAGTTCTACACCCTTCTG+TGG + chr4_3:9518543-9518562 None:intergenic 45.0%
! AGCCGAGTATTGTTCCGAAT+TGG + chr4_3:9519269-9519288 None:intergenic 45.0%
!! TCAGATGGACTGAAACCAGG+TGG + chr4_3:9516536-9516555 None:intergenic 50.0%
CATCAGCCAACAGCATAGCA+AGG - chr4_3:9516999-9517018 Msa0628810:intron 50.0%
GGTAAGATCAGTACGCCCTA+TGG - chr4_3:9518284-9518303 Msa0628810:intron 50.0%
! GTCACTGCTGAAGGCCTTAT+AGG + chr4_3:9519109-9519128 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 9516377 9519333 9516377 ID=Msa0628810;Name=Msa0628810
chr4_3 mRNA 9516377 9519333 9516377 ID=Msa0628810-mRNA-1;Parent=Msa0628810;Name=Msa0628810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.75|0|1|1|1|5|0|494
chr4_3 exon 9519118 9519333 9519118 ID=Msa0628810-mRNA-1:exon:2867;Parent=Msa0628810-mRNA-1
chr4_3 exon 9518594 9518752 9518594 ID=Msa0628810-mRNA-1:exon:2866;Parent=Msa0628810-mRNA-1
chr4_3 exon 9517426 9517952 9517426 ID=Msa0628810-mRNA-1:exon:2865;Parent=Msa0628810-mRNA-1
chr4_3 exon 9517038 9517205 9517038 ID=Msa0628810-mRNA-1:exon:2864;Parent=Msa0628810-mRNA-1
chr4_3 exon 9516377 9516791 9516377 ID=Msa0628810-mRNA-1:exon:2863;Parent=Msa0628810-mRNA-1
chr4_3 CDS 9519118 9519333 9519118 ID=Msa0628810-mRNA-1:cds;Parent=Msa0628810-mRNA-1
chr4_3 CDS 9518594 9518752 9518594 ID=Msa0628810-mRNA-1:cds;Parent=Msa0628810-mRNA-1
chr4_3 CDS 9517426 9517952 9517426 ID=Msa0628810-mRNA-1:cds;Parent=Msa0628810-mRNA-1
chr4_3 CDS 9517038 9517205 9517038 ID=Msa0628810-mRNA-1:cds;Parent=Msa0628810-mRNA-1
chr4_3 CDS 9516377 9516791 9516377 ID=Msa0628810-mRNA-1:cds;Parent=Msa0628810-mRNA-1
Gene Sequence

>Msa0628810

ATGTCTTTTAGTTTCAACAATCACTTTTCCAACACAAACAATAACATCACCACCTTGGATATTGATAAATTTGTTGAAACTTCTTCTCAACTAAAAACTCATGATGATGATCATTTTGCACTTGATGATGTAATTTATCCTTCTTATTCTGATTTTCCACCTGGTTTCAGTCCATCTGAGTTATTGCATTCACCTTCCTTTCTTTCTTCTTCTAATATTCTTTCATCATATACAAATGAACCTTCTACTGTGCAAAGCATCAGCCAACAGCATAGCAAGGAATTAGAAGAGAGAAACTTCTCTGAGCCCTCTTTCCAAACACAAAAACAGACCATGCATGATCTCTTTCAATCTTCCACAAGTATGTTTCAAGTGGAAGAACCACTAAAGACACATGACACATTGATATTCAATGAAACTACAAAGCAACCAAATTTATCATTTGAAGGAACAACAAAACATGAAGCACAAACAAATTCTTCAGCTCCTAATTCTAGTTATTTTAACAACACTGGTGCTTCTATGTCTAAAAGTGAACAAAGAAAATCAGAAGAAGATGGATACAGGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACTAATCCAATTTGCTCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGATGGACAAATTACTCAAATAGTATATAAAGGAAGTCATAACCATCCTAAGCCTCAGTGTACAAAAAGAAGAGCAAATTCTCAATATATTCATCAACCTTCTTCATCATGCAACAACTCTATGGCTTCTGATATTTCTTTGGGAGAGGATGATTTTGACCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGACTTGGGAATAGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATAGCTATTCTTATTCCACAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATTCTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTACTGTGAGAAAACATGTTGAGAGAGCAGCACATGATATTAAAGCAGTGATCACAACATATGAAGGAAAACATAACCATGATGTACCTCTAGGAAAAGGAATTTCAAGCAGTAACATAAACAGAACTTCTCTTACCAACAATACATGTAATGTTACACCTATAAGGCCTTCAGCAGTGACTAATTATTCTAGCTTAGCAAATTTTACAAATTCACTTCATGATTCAAAGCTACCAACTTCTGAAAATCAAGAACATTTTCAGCTAGACATGTTGATGAATTCTAGAAGCTTTTTGGACAGATCAATTGGTTCAAATACCAATTCGGAACAATACTCGGCTAAAGATGACTCATTCTTTCAATCTTTTATATTGAAGAACTTTTAA
Protein sequence

>Msa0628810

MSFSFNNHFSNTNNNITTLDIDKFVETSSQLKTHDDDHFALDDVIYPSYSDFPPGFSPSELLHSPSFLSSSNILSSYTNEPSTVQSISQQHSKELEERNFSEPSFQTQKQTMHDLFQSSTSMFQVEEPLKTHDTLIFNETTKQPNLSFEGTTKHEAQTNSSAPNSSYFNNTGASMSKSEQRKSEEDGYRWRKYGEKQVKGSENPRSYYKCTNPICSMKKKVERSLDDGQITQIVYKGSHNHPKPQCTKRRANSQYIHQPSSSCNNSMASDISLGEDDFDQTSQTSFSGGDYDDLGIEAKRWKGENENDSYSYSTEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCTVRKHVERAAHDIKAVITTYEGKHNHDVPLGKGISSSNINRTSLTNNTCNVTPIRPSAVTNYSSLANFTNSLHDSKLPTSENQEHFQLDMLMNSRSFLDRSIGSNTNSEQYSAKDDSFFQSFILKNF*