AlfalfaGEDB | Msa0599290

M. sativa cultivar zhongmu-4 / Msa0599290

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599290	XP_013442533.2	74.952	1046	194	15	1	998	1	1026	0.0	1522

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599290	sp\|Q9ZR08\|Y4230_ARATH	57.841	389	153	5	595	978	441	823	1.13e-139	442
Msa0599290	sp\|Q9ZR08\|Y4230_ARATH	38.983	413	215	13	32	433	28	414	5.12e-73	262

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0599290	0.805486	1.304311e-49	-8.615850e-47
Msa0157290	Msa0599290	0.805615	1.225531e-49	-8.615850e-47
Msa0195770	Msa0599290	0.811484	6.842341e-51	-8.615850e-47
Msa0201070	Msa0599290	0.819299	1.249549e-52	-8.615850e-47
Msa0262520	Msa0599290	0.805073	1.591694e-49	-8.615850e-47
Msa0599290	Msa0621590	0.816697	4.837260e-52	-8.615850e-47
Msa0599290	Msa0639850	0.818740	1.673873e-52	-8.615850e-47
Msa0599290	Msa0677400	0.800194	1.615940e-48	-8.615850e-47
Msa0599290	Msa0678280	0.894155	3.216534e-75	-8.615850e-47
Msa0599290	Msa0844240	0.803815	2.911826e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599290	MtrunA17_Chr4g0023111	74.952	1046	194	15	1	998	1	1026	0.0	1522
Msa0599290	MtrunA17_Chr4g0023221	45.619	1050	474	27	2	992	22	1033	0.0	830
Msa0599290	MtrunA17_Chr2g0323231	55.453	541	182	8	469	998	2	494	0.0	570
Msa0599290	MtrunA17_Chr2g0280831	51.250	400	171	6	588	978	1	385	5.68e-128	394
Msa0599290	MtrunA17_Chr4g0055011	58.917	314	128	1	673	985	56	369	4.43e-127	390
Msa0599290	MtrunA17_Chr4g0048631	52.217	406	180	5	595	992	439	838	9.80e-127	405
Msa0599290	MtrunA17_Chr4g0048631	28.673	422	241	20	15	406	4	395	2.23e-27	119
Msa0599290	MtrunA17_Chr7g0236531	59.547	309	124	1	673	980	23	331	5.39e-126	387
Msa0599290	MtrunA17_Chr2g0280751	52.468	385	180	3	593	976	432	814	6.24e-126	403
Msa0599290	MtrunA17_Chr2g0280751	33.876	307	150	17	48	330	50	327	1.81e-26	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0599290	AT4G03230.4	45.648	988	462	24	32	978	28	981	0.0	799
Msa0599290	AT4G03230.1	45.648	988	462	24	32	978	28	981	0.0	799
Msa0599290	AT4G03230.5	45.993	911	417	24	113	978	29	909	0.0	743
Msa0599290	AT4G03230.2	44.127	911	406	25	113	978	29	881	0.0	694
Msa0599290	AT4G03230.6	44.127	911	406	25	113	978	29	881	0.0	694
Msa0599290	AT4G03230.7	45.769	839	388	21	185	978	8	824	0.0	686
Msa0599290	AT4G03230.3	45.704	838	388	21	186	978	1	816	0.0	684
Msa0599290	AT4G03230.8	57.841	389	153	5	595	978	441	823	1.15e-140	442
Msa0599290	AT4G03230.8	38.983	413	215	13	32	433	28	414	5.20e-74	262
Msa0599290	AT1G11330.2	50.639	391	183	4	597	986	441	822	5.77e-121	390

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Find 205 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGACCACATTTATT+GGG	0.362588	4_2:-38567475	Msa0599290:CDS
AAACAGAGGCAAGCACAGAG+AGG	0.683074	4_2:-38564998	Msa0599290:CDS
AAACAGGACAGTGAAACTCA+TGG	0.561314	4_2:-38567703	Msa0599290:CDS
AAACTGAAATCCCCGCTTCC+TGG	0.322420	4_2:+38567537	None:intergenic
AAACTTGGCAAAGGTGGTTT+TGG	0.245550	4_2:-38565615	Msa0599290:CDS
AAAGGAACACTGGGTTCTAT+CGG	0.518016	4_2:-38564663	Msa0599290:CDS
AAAGTTATCACAAACGGGTT+CGG	0.490098	4_2:+38566227	None:intergenic
AAATCAACCACCTTGTAAAC+TGG	0.400526	4_2:+38565591	None:intergenic
AAATTCTTCCCTACAAGACT+TGG	0.513525	4_2:-38567130	Msa0599290:CDS
AACACTCCAGGCTCAGAAAT+TGG	0.249622	4_2:-38564224	Msa0599290:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTGGAAAAATATTTGAACT+TGG	-	chr4_2:38564188-38564207	Msa0599290:three_prime_UTR	30.0%
CACAAAGTTACTTAGGTATA+TGG	-	chr4_2:38564240-38564259	Msa0599290:three_prime_UTR	30.0%
TCAAAAACAAACAGTTGTGT+GGG	-	chr4_2:38564295-38564314	Msa0599290:CDS	30.0%
GTTCATCATCATATAACACA+AGG	+	chr4_2:38564514-38564533	None:intergenic	30.0%
TAAAACGAGACCACATTTAT+TGG	-	chr4_2:38564705-38564724	Msa0599290:CDS	30.0%
AAAACGAGACCACATTTATT+GGG	-	chr4_2:38564706-38564725	Msa0599290:CDS	30.0%
CAAAGCAAAGTTTGATGAAT+TGG	-	chr4_2:38564751-38564770	Msa0599290:CDS	30.0%
GGAATTTAGTAAACTGAAGT+TGG	+	chr4_2:38564810-38564829	None:intergenic	30.0%
AACTTGACCAAGATAAAAAC+AGG	-	chr4_2:38565130-38565149	Msa0599290:CDS	30.0%
ATCTCAATCCTTCAAATTGT+TGG	-	chr4_2:38565275-38565294	Msa0599290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	38564038	38568165	38564038	ID=Msa0599290;Name=Msa0599290
chr4_2	mRNA	38564038	38568165	38564038	ID=Msa0599290-mRNA-1;Parent=Msa0599290;Name=Msa0599290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.85\|0.87\|1\|0.71\|0.62\|8\|232\|998
chr4_2	exon	38564038	38564554	38564038	ID=Msa0599290-mRNA-1:exon:8500;Parent=Msa0599290-mRNA-1
chr4_2	exon	38564633	38564783	38564633	ID=Msa0599290-mRNA-1:exon:8499;Parent=Msa0599290-mRNA-1
chr4_2	exon	38564984	38565221	38564984	ID=Msa0599290-mRNA-1:exon:8498;Parent=Msa0599290-mRNA-1
chr4_2	exon	38565312	38565519	38565312	ID=Msa0599290-mRNA-1:exon:8497;Parent=Msa0599290-mRNA-1
chr4_2	exon	38565602	38565810	38565602	ID=Msa0599290-mRNA-1:exon:8496;Parent=Msa0599290-mRNA-1
chr4_2	exon	38565910	38566035	38565910	ID=Msa0599290-mRNA-1:exon:8495;Parent=Msa0599290-mRNA-1
chr4_2	exon	38566124	38566585	38566124	ID=Msa0599290-mRNA-1:exon:8494;Parent=Msa0599290-mRNA-1
chr4_2	exon	38566848	38568165	38566848	ID=Msa0599290-mRNA-1:exon:8493;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38566848	38568165	38566848	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38566124	38566585	38566124	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38565910	38566035	38565910	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38565602	38565810	38565602	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38565312	38565519	38565312	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38564984	38565221	38564984	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38564633	38564783	38564633	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	CDS	38564270	38564554	38564270	ID=Msa0599290-mRNA-1:cds;Parent=Msa0599290-mRNA-1
chr4_2	three_prime_UTR	38564038	38564269	38564038	ID=Msa0599290-mRNA-1:three_prime_utr;Parent=Msa0599290-mRNA-1

Gene Sequence

>Msa0599290

ATGTCCAGTAACATGAGAACTGTTTGTCTCTTTTTCAATCTTTATACTTCTTGGTTGCTAATATGCTCTTCTCAGCTGTGTTTAGCAGGAGATACTTTAAACACTGGCCAGAACATAGTAGGCAATGAAACCTTAACCAACCTTGTTTCAGCTGGAAAAATATTTGAACTTGGCTTTTTTACTCCAAGCAACAATGGTGGCTCACAAAGTTACTTAGGTATATGGTATCACATGCAAGAAGAGGGGTCACAACAACCTCAAAAACAAACAGTTGTGTGGGTTGCCAACAGAGACAATCCTGTAGCTGTTGATTCAACTGGAGTTTTCCAAATAGCAGAGAATGGGAATCTTGTAGTTGTAGACACGTCCGGTAATGCAAAAAGGTACTGGTCATCTAATTCCAATTCCAAAATCAAAGACTCTTCTAGTTTTTCGCCTAAAAACAGGACAGTGAAACTCATGGATTCTGGTAACCTTGTGTTATATGATGATGAACTCATGTTAGTGAAACTGTGGGAGAGCTTTGAAAATCCAACTGACACATTCTTACCAGGAATGAAGATGGATAGGAATTTGAGTCTGACTAGTTGGAGAAAGGCTGATGACCCAGGAAGCGGGGATTTCAGTTTTATGATGGAACAAACAGGAGACAACCGTTTTATCATCATAAAACGAGACCACATTTATTGGGAGAGCGAAGAGTGTGGAACGCTCAAAGCAAAGTTTGATGAATTGGAAGATATCAGCTTTGAGGTTTATAATTTGTTGACCAACTTCAGTTTACTAAATTCCACGAAGCGTTATGACAATACAAGGTTGTTTCTCGATTCTAAAGGTGTGATTCAGTTGGTGGAAAATTTGTTCGGAGGTGAGTTATTGGTTAGATGGAAGCAGCCAAATGCCAAATGTTTAAGATATAATGAATGTGGATACTTTGCTAGCTGTAACGGTAATGATAATGACGAGGTGTGCAAATGTTTGCCCGGATTCTACAATGATTACTCGGGAGAGGGAAATTCTTCCCTACAAGACTTGGCAGGTTGTAAGAGGAGACAATTAGCATCTTGTACTGGAAATGGCACGGCGTTCTTGAACTTGACCAAGATAAAAACAGGAAGGCCGGGTATAAAGGTAACTGCAGCATATGAAGAAAATTGCACATCTATGTGCCTTGGGATGTGTCCACGATGTCAGGCTTACTCGTATGCTCCACTTCATACTGGTCAACAGCAGCGTGATCTCAATCCTTCAAATTGTTGGATTTGGACACAAAGTTTAACTACTCTTAAAGAAGAGTATACTAATTGGGATTATGATCCACCAACTCCAAGAACTTGTGAGCCTTGTGGTACAAACACAGTCCCTTATCCTCTCAGTACCGGACCCAACTGTGGAGAACTCGCATACTTCAACTTTAGATGCAACACCTCAACGGGTAAACTTAGCTTCACCGCCAACAACAGCGTTAGTTACAAAGTTATTAGTGTAGACCCAAGTTCAAGAACATTTACAATTTATAATGAGCATAATTCTTTCAAACAATATTGTGCTGAAGGATCTAAATACAAAGGAAATTTAAAGGTTTTCTCACCGTTTTACTTTGCCAATGACAATCCGTGCTCTGAACAAGTGGAAGTTAGTTGGGATCCACCTTCCGAACCCGTTTGTGATAACTTTGTTGATTGCCATGGTTGGGAACATTCTACCTGTAGTAAAGGAAACAGGTGTCTTTGCAATGCAAACTATAAATGGAGTGGTGAGCTTTTACTTTGTACCGAAAAAGGGAACTCTAAAAGCTCGTTCCATTTGATACTTGGCTTAACTCTTACCGGTTTGTTTACTATAGCATGCATCATTATTTTTGCTTATGCATGCAGAAGAAGAATAGCTCATATGGTTAAGCAAGATAAGGAAAGCATACAAAGAAATATTAGAGGGAAATTTTACAACAGTAAAAGACTTGTGAAGGACATGATAGAAATAGAGGATTTGGAAGAGAATGACAATGAAGGAATAGAGGTTCCCTATTTTGATTTTGAGAGTATATTAGTGGCCACAGATGGCTTTTCAGATGCAAATAAACTTGGCAAAGGTGGTTTTGGACCAGTTTACAAGGGTAAACTTGGTGGTCAAGAAGTTGCGATAAAGAGACTTTCAAGTGTTTCATCACAAGGTTTACAGGAATTCAAGAATGAGGTTGGTTTGATAGCTAAACTTCAACATCGAAACCTTGTTATATTACAGGGCTACTGCATAAAAGGAGAGGAAAAAATTCTAGTTTATGAATTTTTGCCTAACAAGAGTTTGGACTTATTGATATTCGATCCGACAAAAAGCGTAATTTTGGATTGGCAAATGCGGTTTGACATAATTCTCGGAATTGCTCGTGGACTTCTCTATCTTCATCAAGACTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTCTAGATGAGGAGATGCAACCAAAAATCTCAGATTTTGGAATAGCAAGAATAATTGCAGGCAAAGAAACAGAGGCAAGCACAGAGAGGGTTGTTGGTACATACGGGTACATGTCTCCTGAGTATGCTTTGGATGGATATATTTCAACAAAGTCGGATGTTTTCAGTTTTGGCGTTGTCTTGCTTGAGATCATCAGTGGAAAAAGGAACACTGGGTTCTATCGGTCTAAAGAGATTTCAAGTCTTTTGGGTTATGCTTGGAGACTATGGAGAGAGGATAAACAGCTAGATTTAATGGACCCGTCTCTATGTGATACTTACAATGCTAACCAATTTATTAGGTGTTCCCAAATTGGACTCTTATGCGTACAGGATGAACCGGATGATCGTCCACACATGTCAAATGTGGTGACCATGCTAGACAATGAAACTACAACCCTCTTAACCCCTAAACAACCAACCTTTTTTTCACGTCAAGACCTATCTAGTACAGCTTCTTCAAGTCTGCAGATTGAAAGTAGCATTGAAGAATGCAGATAA

Protein sequence

>Msa0599290

MSSNMRTVCLFFNLYTSWLLICSSQLCLAGDTLNTGQNIVGNETLTNLVSAGKIFELGFFTPSNNGGSQSYLGIWYHMQEEGSQQPQKQTVVWVANRDNPVAVDSTGVFQIAENGNLVVVDTSGNAKRYWSSNSNSKIKDSSSFSPKNRTVKLMDSGNLVLYDDELMLVKLWESFENPTDTFLPGMKMDRNLSLTSWRKADDPGSGDFSFMMEQTGDNRFIIIKRDHIYWESEECGTLKAKFDELEDISFEVYNLLTNFSLLNSTKRYDNTRLFLDSKGVIQLVENLFGGELLVRWKQPNAKCLRYNECGYFASCNGNDNDEVCKCLPGFYNDYSGEGNSSLQDLAGCKRRQLASCTGNGTAFLNLTKIKTGRPGIKVTAAYEENCTSMCLGMCPRCQAYSYAPLHTGQQQRDLNPSNCWIWTQSLTTLKEEYTNWDYDPPTPRTCEPCGTNTVPYPLSTGPNCGELAYFNFRCNTSTGKLSFTANNSVSYKVISVDPSSRTFTIYNEHNSFKQYCAEGSKYKGNLKVFSPFYFANDNPCSEQVEVSWDPPSEPVCDNFVDCHGWEHSTCSKGNRCLCNANYKWSGELLLCTEKGNSKSSFHLILGLTLTGLFTIACIIIFAYACRRRIAHMVKQDKESIQRNIRGKFYNSKRLVKDMIEIEDLEENDNEGIEVPYFDFESILVATDGFSDANKLGKGGFGPVYKGKLGGQEVAIKRLSSVSSQGLQEFKNEVGLIAKLQHRNLVILQGYCIKGEEKILVYEFLPNKSLDLLIFDPTKSVILDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGIARIIAGKETEASTERVVGTYGYMSPEYALDGYISTKSDVFSFGVVLLEIISGKRNTGFYRSKEISSLLGYAWRLWREDKQLDLMDPSLCDTYNANQFIRCSQIGLLCVQDEPDDRPHMSNVVTMLDNETTTLLTPKQPTFFSRQDLSSTASSSLQIESSIEECR*