AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832520 MtrunA17_Chr5g0397621 97.993 897 18 0 104 1000 14 910 0.0 1789
Msa0832520 MtrunA17_Chr8g0339181 56.217 941 401 6 47 981 22 957 0.0 1031
Msa0832520 MtrunA17_Chr8g0374321 67.595 682 208 7 12 686 14 689 0.0 942
Msa0832520 MtrunA17_Chr2g0297051 49.893 938 446 9 56 976 84 1014 0.0 865
Msa0832520 MtrunA17_Chr2g0297051 32.432 148 94 1 124 265 74 221 4.89e-16 83.6
Msa0832520 MtrunA17_Chr2g0297051 25.532 188 124 3 38 225 149 320 1.12e-11 69.3
Msa0832520 MtrunA17_Chr4g0052521 48.791 951 458 9 56 983 45 989 0.0 853
Msa0832520 MtrunA17_Chr4g0052521 28.188 149 102 2 38 186 112 255 7.00e-12 69.7
Msa0832520 MtrunA17_Chr4g0052521 30.233 172 95 4 111 257 12 183 2.59e-11 68.2
Msa0832520 MtrunA17_Chr4g0050431 39.470 641 349 8 351 971 287 908 1.13e-129 416
Msa0832520 MtrunA17_Chr8g0374331 79.839 248 50 0 742 989 1 248 8.97e-129 389
Msa0832520 MtrunA17_Chr8g0374391 79.668 241 49 0 749 989 1 241 1.84e-124 378
Msa0832520 MtrunA17_Chr3g0136331 35.659 645 375 11 361 975 251 885 1.74e-111 366
Msa0832520 MtrunA17_Chr8g0374371 81.283 187 34 1 435 620 1 187 9.62e-104 323
Msa0832520 MtrunA17_Chr2g0297871 30.743 592 349 15 421 996 22 568 5.44e-71 249
Msa0832520 MtrunA17_Chr4g0071991 32.008 528 327 11 401 924 160 659 1.72e-70 254
Msa0832520 MtrunA17_Chr5g0397631 87.000 100 9 1 1 100 1 96 2.31e-49 181
Msa0832520 MtrunA17_Chr4g0053441 28.892 623 379 20 366 950 173 769 5.47e-46 178
Msa0832520 MtrunA17_Chr8g0335291 22.540 559 341 16 458 950 152 684 1.25e-21 101
Msa0832520 MtrunA17_Chr1g0148031 23.679 549 324 15 458 939 144 664 1.84e-21 100
Msa0832520 MtrunA17_Chr6g0452721 23.656 558 337 18 458 950 146 679 5.29e-21 99.4
Msa0832520 MtrunA17_Chr5g0401211 34.659 176 86 4 785 931 650 825 7.92e-21 99.0
Msa0832520 MtrunA17_Chr4g0072131 22.878 542 337 13 458 939 147 667 1.64e-20 97.8
Msa0832520 MtrunA17_Chr3g0138931 22.587 549 330 15 458 939 144 664 4.03e-20 96.7
Msa0832520 MtrunA17_Chr3g0134771 33.152 184 94 4 777 931 644 827 7.51e-20 95.9
Msa0832520 MtrunA17_Chr2g0333721 22.569 545 330 16 458 931 142 665 1.40e-19 94.7
Msa0832520 MtrunA17_Chr4g0054021 34.091 176 87 4 785 931 573 748 2.53e-19 94.0
Msa0832520 MtrunA17_Chr8g0382071 33.333 177 89 4 786 933 651 827 3.87e-17 87.0
Msa0832520 MtrunA17_Chr7g0263361 32.911 158 74 3 785 910 628 785 5.33e-17 86.7
Msa0832520 MtrunA17_Chr8g0340261 31.953 169 82 4 775 910 184 352 1.07e-16 84.7
Msa0832520 MtrunA17_Chr2g0298871 29.282 181 95 2 786 933 699 879 4.58e-16 83.6
Msa0832520 MtrunA17_Chr4g0020551 32.184 174 90 3 786 931 587 760 4.88e-16 83.2
Msa0832520 MtrunA17_Chr6g0456201 31.646 158 76 3 785 910 643 800 5.77e-16 83.2
Msa0832520 MtrunA17_Chr7g0260401 31.250 160 76 2 785 910 674 833 9.16e-16 82.4
Msa0832520 MtrunA17_Chr8g0346461 31.875 160 75 2 785 910 621 780 1.08e-15 82.4
Msa0832520 MtrunA17_Chr4g0002331 30.387 181 93 3 786 933 712 892 1.54e-15 82.0
Msa0832520 MtrunA17_Chr4g0059961 28.283 198 107 4 785 950 487 681 8.83e-15 79.3
Msa0832520 MtrunA17_Chr2g0298031 28.723 188 101 3 782 939 486 670 1.07e-14 79.0
Msa0832520 MtrunA17_Chr7g0276551 28.788 198 105 4 785 950 249 442 1.50e-14 78.2
Msa0832520 MtrunA17_Chr1g0173111 31.429 175 91 4 786 931 648 822 1.53e-14 78.6
Msa0832520 MtrunA17_Chr8g0381711 23.454 388 217 9 605 913 286 672 2.11e-14 78.2
Msa0832520 MtrunA17_Chr3g0134951 30.573 157 78 1 785 910 585 741 3.44e-14 77.4
Msa0832520 MtrunA17_Chr1g0147981 28.205 195 100 4 782 946 497 681 4.11e-14 77.0
Msa0832520 MtrunA17_Chr8g0365021 28.205 195 100 4 782 946 550 734 4.80e-14 77.0
Msa0832520 MtrunA17_Chr4g0065481 28.205 195 100 4 782 946 481 665 5.44e-14 76.6
Msa0832520 MtrunA17_Chr2g0304941 28.824 170 91 2 785 924 484 653 2.66e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832520 AT1G63440.1 73.615 993 253 5 3 989 4 993 0.0 1485
Msa0832520 AT5G44790.1 50.530 944 444 9 56 983 62 998 0.0 892
Msa0832520 AT5G44790.1 33.083 133 88 1 131 262 59 191 2.15e-14 78.6
Msa0832520 AT5G44790.1 27.778 162 110 2 48 206 131 288 2.38e-14 78.6
Msa0832520 AT4G33520.2 35.226 863 439 24 132 971 152 917 4.06e-116 380
Msa0832520 AT5G21930.2 34.595 740 416 18 287 981 167 883 3.07e-115 376
Msa0832520 AT5G21930.1 34.595 740 416 18 287 981 167 883 3.07e-115 376
Msa0832520 AT4G33520.3 35.110 863 440 24 132 971 152 917 7.58e-115 377
Msa0832520 AT5G21930.3 33.108 740 404 19 287 981 167 860 9.94e-103 342
Msa0832520 AT5G21930.4 33.788 660 371 18 287 902 167 804 7.58e-92 311
Msa0832520 AT4G30110.1 32.895 532 322 12 399 924 153 655 3.80e-76 270
Msa0832520 AT4G30110.2 32.895 532 322 12 399 924 153 655 3.80e-76 270
Msa0832520 AT2G19110.2 31.676 543 329 14 401 938 166 671 1.05e-68 251
Msa0832520 AT2G19110.3 31.676 543 329 14 401 938 166 671 1.05e-68 251
Msa0832520 AT2G19110.1 31.676 543 329 14 401 938 166 671 1.05e-68 251
Msa0832520 AT4G30120.2 30.836 347 212 6 403 746 4 325 6.54e-45 167
Msa0832520 AT4G30120.1 30.836 347 212 6 403 746 163 484 1.95e-43 167
Msa0832520 AT4G37270.1 28.523 596 370 18 366 924 169 745 6.60e-43 169
Msa0832520 AT2G41560.1 24.912 570 321 14 468 933 255 821 2.07e-27 120
Msa0832520 AT2G41560.2 24.912 570 321 14 468 933 153 719 2.42e-27 120
Msa0832520 AT2G41560.3 24.912 570 321 14 468 933 153 719 2.42e-27 120
Msa0832520 AT2G41560.4 24.912 570 321 14 468 933 153 719 2.42e-27 120
Msa0832520 AT1G17260.1 23.327 553 317 15 457 931 149 672 2.34e-23 107
Msa0832520 AT5G62670.1 23.784 555 340 17 458 950 146 679 1.81e-22 104
Msa0832520 AT3G60330.4 22.887 568 341 18 448 950 140 675 1.48e-21 101
Msa0832520 AT3G60330.3 22.887 568 341 18 448 950 140 675 1.48e-21 101
Msa0832520 AT3G60330.2 22.711 568 342 18 448 950 140 675 3.34e-21 100
Msa0832520 AT3G60330.1 22.711 568 342 18 448 950 140 675 3.34e-21 100
Msa0832520 AT3G47950.1 23.243 555 343 17 458 950 150 683 4.82e-21 100
Msa0832520 AT3G47950.2 23.243 555 343 17 458 950 150 683 4.82e-21 100
Msa0832520 AT3G22910.1 22.924 554 314 15 468 910 245 796 1.78e-20 98.2
Msa0832520 AT2G24520.2 23.949 547 325 16 458 939 187 707 5.42e-20 96.7
Msa0832520 AT2G24520.3 23.949 547 325 16 458 939 124 644 6.33e-20 96.3
Msa0832520 AT2G24520.1 23.949 547 325 16 458 939 124 644 6.33e-20 96.3
Msa0832520 AT2G18960.3 22.482 556 329 16 458 946 78 598 1.48e-19 95.1
Msa0832520 AT2G18960.2 22.482 556 329 16 458 946 78 598 1.48e-19 95.1
Msa0832520 AT2G18960.1 22.482 556 329 16 458 946 142 662 1.50e-19 95.1
Msa0832520 AT2G07560.1 22.285 534 317 17 455 920 144 647 1.63e-19 95.1
Msa0832520 AT1G27770.4 34.659 176 86 5 785 931 653 828 1.76e-19 95.1
Msa0832520 AT1G27770.1 34.659 176 86 5 785 931 653 828 1.76e-19 95.1
Msa0832520 AT1G27770.3 34.659 176 86 5 785 931 590 765 1.95e-19 94.7
Msa0832520 AT4G37640.1 33.523 176 88 4 785 931 650 825 3.62e-19 94.0
Msa0832520 AT2G22950.1 33.523 176 88 4 785 931 651 826 8.30e-19 92.8
Msa0832520 AT3G57330.1 32.402 179 93 2 783 933 640 818 1.38e-18 92.0
Msa0832520 AT3G57330.2 32.402 179 93 2 783 933 585 763 1.66e-18 92.0
Msa0832520 AT1G07670.2 31.646 158 76 3 785 910 623 780 6.70e-17 86.7
Msa0832520 AT1G07670.1 31.646 158 76 3 785 910 623 780 6.70e-17 86.7
Msa0832520 AT1G07810.1 31.646 158 76 3 785 910 623 780 8.36e-17 86.3
Msa0832520 AT3G63380.1 32.704 159 74 2 785 910 642 800 2.14e-16 85.1
Msa0832520 AT3G21180.1 30.939 181 92 3 786 933 694 874 3.09e-16 84.7
Msa0832520 AT5G57110.1 29.282 181 95 2 786 933 677 857 3.34e-16 84.3
Msa0832520 AT5G57110.3 29.282 181 95 2 786 933 677 857 3.34e-16 84.3
Msa0832520 AT5G57110.2 29.282 181 95 2 786 933 677 857 3.34e-16 84.3
Msa0832520 AT4G29900.1 30.387 181 93 3 786 933 681 861 6.15e-16 83.6
Msa0832520 AT4G29900.2 30.387 181 93 3 786 933 681 861 6.15e-16 83.6
Msa0832520 AT2G24520.4 24.500 400 226 11 606 939 12 401 1.12e-15 82.4
Msa0832520 AT1G10130.1 30.573 157 78 1 785 910 584 740 7.85e-15 80.1
Msa0832520 AT5G57350.3 29.231 195 98 4 782 946 217 401 9.49e-15 79.3
Msa0832520 AT5G57350.4 29.231 195 98 4 782 946 479 663 1.20e-14 79.3
Msa0832520 AT5G57350.2 29.231 195 98 4 782 946 479 663 1.20e-14 79.3
Msa0832520 AT5G57350.1 29.231 195 98 4 782 946 479 663 1.20e-14 79.3
Msa0832520 AT4G00900.2 30.625 160 77 2 785 910 617 776 2.89e-14 78.2
Msa0832520 AT4G00900.1 30.625 160 77 2 785 910 617 776 2.89e-14 78.2
Msa0832520 AT4G30190.1 28.205 195 100 4 782 946 478 662 7.90e-14 76.6
Msa0832520 AT3G42640.1 30.769 169 86 3 782 920 481 648 1.45e-13 75.9
Msa0832520 AT1G80660.2 29.518 166 86 3 785 920 357 521 7.09e-13 73.6
Msa0832520 AT1G80660.1 29.518 166 86 3 785 920 486 650 7.58e-13 73.6
Msa0832520 AT1G80660.4 29.518 166 86 3 785 920 486 650 9.10e-13 73.2
Msa0832520 AT1G80660.3 29.518 166 86 3 785 920 486 650 9.25e-13 73.2

Find 226 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTATGTTTGGGCTTT+GGG 0.163205 5_4:-5533642 Msa0832520:CDS
TTCTGATGGGCTTGTTGTTT+GGG 0.168913 5_4:-5536377 Msa0832520:CDS
TACCAAAGGCACAAAGTATT+TGG 0.170253 5_4:+5536135 None:intergenic
GCAAATAATGGTCGGTAATA+AGG 0.177452 5_4:-5534847 Msa0832520:CDS
GTCAAGGCTGTTCAGCTTCT+TGG 0.179922 5_4:+5533470 None:intergenic
CTTCTGATGGGCTTGTTGTT+TGG 0.184672 5_4:-5536378 Msa0832520:CDS
ACTGGTCCCCGCCTCGTCTT+TGG 0.216916 5_4:+5538783 None:intergenic
ATTGCCTGCCCTTGTGCTTT+GGG 0.277345 5_4:-5535841 Msa0832520:CDS
CATCTACAGCTTCCAAGATT+TGG 0.282832 5_4:+5537274 None:intergenic
CCTCAATTATGTTTGGGCTT+TGG 0.283004 5_4:-5533643 Msa0832520:CDS
CTTCTGTTGCTAAAGCTACT+TGG 0.285373 5_4:+5537337 None:intergenic
GAAACAAAATCTCGGGCTTC+TGG 0.288098 5_4:+5534909 None:intergenic
TTTGAGGGCTGCTACTTCTA+AGG 0.296547 5_4:-5536650 Msa0832520:CDS
TACTGCTATATTGTTGAGTT+TGG 0.296733 5_4:-5536494 Msa0832520:CDS
TTCCAAATACTTTGTGCCTT+TGG 0.299972 5_4:-5536137 Msa0832520:intron
AATTCCATGTAGCCGTTTGA+TGG 0.301047 5_4:+5538663 None:intergenic
TATTGCCTGCCCTTGTGCTT+TGG 0.308202 5_4:-5535842 Msa0832520:CDS
GAGTTTGATCATGGCATTAT+TGG 0.311760 5_4:+5537173 None:intergenic
CTTATTTCGTTTATTCTGTT+AGG 0.315628 5_4:-5536589 Msa0832520:CDS
AGCCACACCTACTGCTGTTA+TGG 0.315710 5_4:-5535815 Msa0832520:CDS
TTCTAAAGTCTATGAAAATT+AGG 0.317325 5_4:-5534656 Msa0832520:CDS
AAGATGAAGAGAACCCTTCT+TGG 0.320952 5_4:-5534932 Msa0832520:CDS
CACTGGAGTTGGTGCATCTC+AGG 0.324242 5_4:-5535788 Msa0832520:CDS
TCTTATAAAGCAGACATAAC+AGG 0.327815 5_4:-5537075 Msa0832520:CDS
CGGTTGCCGCCTTGGATCGC+TGG 0.329851 5_4:-5533561 Msa0832520:CDS
GAAGACGGTATCCAGGATTT+CGG 0.331287 5_4:+5535913 None:intergenic
TGATGTGATTAAGATTATTC+CGG 0.335725 5_4:-5536413 Msa0832520:CDS
AAATGCGATCAGCAAACTTC+TGG 0.335934 5_4:+5536158 None:intergenic
CAGGCTTTCGGTTGCCGCCT+TGG 0.339159 5_4:-5533569 Msa0832520:CDS
TCAAGGCTGTTCAGCTTCTT+GGG 0.342772 5_4:+5533471 None:intergenic
GTATACGCCTCAATTATGTT+TGG 0.343337 5_4:-5533650 Msa0832520:CDS
GTATGCCGTATACAAATAAA+AGG 0.345506 5_4:-5537429 Msa0832520:CDS
ATGGCGAAGGGAATGTTGTT+GGG 0.353350 5_4:-5536471 Msa0832520:CDS
CTCAACAATATAGCAGTATC+AGG 0.355057 5_4:+5536499 None:intergenic
ATCTCTTCTTCCACCTTCAC+TGG 0.360798 5_4:+5536987 None:intergenic
TATACGCCTCAATTATGTTT+GGG 0.364978 5_4:-5533649 Msa0832520:CDS
ATCTGCTTTCTGATCCGGTT+TGG 0.369734 5_4:+5534551 None:intergenic
ACTTTATCTGCTTTCTGATC+CGG 0.372861 5_4:+5534546 None:intergenic
GATAATAGCTTCGCCATTGA+TGG 0.376166 5_4:+5538880 None:intergenic
AAGACGGTATCCAGGATTTC+GGG 0.380000 5_4:+5535914 None:intergenic
GCGTCGTGGTTCTGCTAATA+TGG 0.383420 5_4:-5536728 Msa0832520:CDS
TTTGAGCTTGCTCTGCAGTT+TGG 0.384745 5_4:-5535880 Msa0832520:CDS
AAGACCGGTACTCTTACTAT+TGG 0.390330 5_4:-5535310 Msa0832520:CDS
GGCAACCGAAAGCCTGTAGA+AGG 0.392593 5_4:+5533576 None:intergenic
CAAATAATGGTCGGTAATAA+GGG 0.394214 5_4:-5534846 Msa0832520:CDS
GATGGCGAAGGGAATGTTGT+TGG 0.397682 5_4:-5536472 Msa0832520:CDS
TGGCTATGAGTAATGATGTT+TGG 0.400777 5_4:+5537294 None:intergenic
TCTATAAATGGGGAAGTAGC+TGG 0.405499 5_4:-5534732 Msa0832520:CDS
AACAGATAAAATATGAGAAC+TGG 0.405763 5_4:+5533242 None:intergenic
TCAGCTCTAAAAGCCCTTCC+TGG 0.406405 5_4:-5537372 Msa0832520:CDS
CAACAAGTTCATAGAATTCC+CGG 0.406563 5_4:+5535242 None:intergenic
CTAGCTGCACACAGTAGAAA+TGG 0.409795 5_4:+5533368 None:intergenic
TCATGGTGACTGGAGACAAC+TGG 0.411106 5_4:-5534629 Msa0832520:CDS
TGGCTTGCCTGGTTCTTAGC+TGG 0.413456 5_4:-5535952 Msa0832520:CDS
GATGTGATTAAGATTATTCC+GGG 0.416786 5_4:-5536412 Msa0832520:CDS
TTAGTTACGTTAACAAAAGA+AGG 0.419860 5_4:+5538589 None:intergenic
AAAGCCCTTCCTGGAGTTGT+TGG 0.420383 5_4:-5537363 Msa0832520:CDS
ACTTGTTGAGTCTGCTCAAA+TGG 0.423294 5_4:-5536194 Msa0832520:CDS
GACGAGGCGGGGACCAGTAC+CGG 0.423853 5_4:-5538778 Msa0832520:CDS
GGACGAAGCGGGGCCGGTAC+TGG 0.425038 5_4:+5538765 None:intergenic
AAAAGAACTCCAGCTGCTAT+TGG 0.426533 5_4:+5533600 None:intergenic
CGTTCGTAACAAGCAAATAA+TGG 0.436023 5_4:-5534859 Msa0832520:CDS
CATTACTCATAGCCAAATCT+TGG 0.439206 5_4:-5537286 Msa0832520:CDS
CTTGGCATTCCAATAGCAGC+TGG 0.440345 5_4:-5533609 Msa0832520:CDS
TATTGGAGAGGTTATTCGTT+GGG 0.440502 5_4:-5536815 Msa0832520:CDS
ATCATGCTTACCCGAAATCC+TGG 0.442883 5_4:-5535924 Msa0832520:CDS
AATTCCATTGCAAGGGAAGT+TGG 0.443142 5_4:-5534597 Msa0832520:CDS
ATGACTTGCTCCGCTTGCGC+TGG 0.446381 5_4:-5538700 Msa0832520:CDS
TTCTGGGTACACGGTGGCTA+TGG 0.446961 5_4:-5533838 Msa0832520:CDS
GGTGCAAAAGTTGCTTCTGA+TGG 0.448482 5_4:-5536391 Msa0832520:CDS
GGTCGGTAATAAGGGCTTGA+TGG 0.449447 5_4:-5534838 Msa0832520:CDS
GCTTTGGGTTATAATTTGCT+TGG 0.454401 5_4:-5533627 Msa0832520:CDS
AGCTTTGGAAAGTGCACATA+AGG 0.456783 5_4:-5535743 Msa0832520:intron
TTCTGTTGCTAAAGCTACTT+GGG 0.456910 5_4:+5537338 None:intergenic
GCCGAAAACATGGCTCAAAC+AGG 0.459491 5_4:-5534765 Msa0832520:CDS
CATGTTAAGGCAACGAAGGT+TGG 0.462412 5_4:-5536247 Msa0832520:CDS
GATCAAAGGAGGGCAAGCTT+TGG 0.463274 5_4:-5535758 Msa0832520:CDS
TTGGATCGCTGGAGCTGCTA+TGG 0.464018 5_4:-5533550 Msa0832520:CDS
ATCGTGAAGATGCTTACTAT+TGG 0.467103 5_4:-5536832 Msa0832520:CDS
AGCTGAACAGCCTTGACATA+GGG 0.471195 5_4:-5533464 Msa0832520:CDS
GCAGATGTGGGAATGGCAAT+AGG 0.471457 5_4:-5533777 Msa0832520:CDS
TCTCGGGCTTCTGGCCAAGA+AGG 0.471879 5_4:+5534918 None:intergenic
GGAAGAAATTGATAGTAGGT+TGG 0.473391 5_4:-5536446 Msa0832520:CDS
CATTTCTACTGTGTGCAGCT+AGG 0.475073 5_4:-5533367 Msa0832520:three_prime_UTR
TTGGGGTAAGAAGGCATTGA+AGG 0.479436 5_4:+5538802 None:intergenic
GGGAGGAAGAAATTGATAGT+AGG 0.480054 5_4:-5536450 Msa0832520:CDS
AGGAAAGGTGATACTGTTAT+CGG 0.485797 5_4:-5536298 Msa0832520:CDS
GGTGAAAGATGACGCGGGTA+CGG 0.486310 5_4:+5538611 None:intergenic
TCTTGAGCACCTGGTTTCAG+TGG 0.486773 5_4:+5534690 None:intergenic
CTATAAATGGGGAAGTAGCT+GGG 0.488705 5_4:-5534731 Msa0832520:CDS
AGACCGGTACTCTTACTATT+GGG 0.489290 5_4:-5535309 Msa0832520:CDS
ATCTTCGACGAGTTTGATCA+TGG 0.490734 5_4:+5537164 None:intergenic
GTGTGTAATTCTAAAACTCC+AGG 0.492652 5_4:+5537126 None:intergenic
TGTTATTGCTGAAGCCAAAC+CGG 0.492883 5_4:-5534565 Msa0832520:CDS
GTGCAAAAGTTGCTTCTGAT+GGG 0.493563 5_4:-5536390 Msa0832520:CDS
AACTAGTAATGGAAATTTGA+AGG 0.493572 5_4:-5537022 Msa0832520:CDS
GTCCATGGAAGACGGTATCC+AGG 0.495093 5_4:+5535906 None:intergenic
CAGTAATGGAAACAAAATCT+CGG 0.495105 5_4:+5534901 None:intergenic
TTGGAAGCTGTAGATGAAGC+TGG 0.500496 5_4:-5537267 Msa0832520:CDS
GAAACCTCCATGGACGAAGC+GGG 0.501595 5_4:+5538754 None:intergenic
AAATCCATCAAACGGCTACA+TGG 0.503805 5_4:-5538667 Msa0832520:CDS
GCAGTTTGGAATTTCTGTCA+TGG 0.508557 5_4:-5535866 Msa0832520:CDS
GTTATGGTTGGCACTGGAGT+TGG 0.509447 5_4:-5535799 Msa0832520:CDS
GTGAATGAGAGTATGATAAC+TGG 0.512746 5_4:-5536343 Msa0832520:CDS
ATTAACTTCTTATCATAGCA+TGG 0.515916 5_4:+5533295 None:intergenic
GAAATCACTTCTTGAGCACC+TGG 0.516021 5_4:+5534681 None:intergenic
AAGCTGAACAGCCTTGACAT+AGG 0.516431 5_4:-5533465 Msa0832520:CDS
TCTTACCCCAAAGACGAGGC+GGG 0.518671 5_4:-5538790 Msa0832520:CDS
TTCGTTTCGAAAACAAGCTA+AGG 0.518784 5_4:+5538858 None:intergenic
CGATCAGCAAACTTCTGGAC+AGG 0.520178 5_4:+5536163 None:intergenic
TATGGATGTGCTGATAGCAC+TGG 0.521417 5_4:-5536710 Msa0832520:CDS
TTTGTTTCCATTACTGGACA+TGG 0.523642 5_4:-5534894 Msa0832520:CDS
GCCTCGTCTTTGGGGTAAGA+AGG 0.526182 5_4:+5538793 None:intergenic
CTTTACTCCATGTCCAGTAA+TGG 0.526279 5_4:+5534887 None:intergenic
CATGGTGACTGGAGACAACT+GGG 0.527270 5_4:-5534628 Msa0832520:CDS
ATTAGGAGCATCATGGTGAC+TGG 0.527343 5_4:-5534639 Msa0832520:CDS
GAATGGTGTCTTGCATGTTA+AGG 0.527353 5_4:-5536260 Msa0832520:CDS
CGAAACCTCCATGGACGAAG+CGG 0.529228 5_4:+5538753 None:intergenic
TGGTCCCCGCCTCGTCTTTG+GGG 0.531488 5_4:+5538785 None:intergenic
AATTCCAACTTCCCTTGCAA+TGG 0.532336 5_4:+5534593 None:intergenic
ATCACATTAATGAAATCCCT+TGG 0.532861 5_4:+5537051 None:intergenic
CTATTGGAGAGGTTATTCGT+TGG 0.536377 5_4:-5536816 Msa0832520:CDS
TAAACCCAAAGCACAAGGGC+AGG 0.536972 5_4:+5535837 None:intergenic
TGTTGAGTTTGGATGGCGAA+GGG 0.537106 5_4:-5536483 Msa0832520:CDS
AGGCATGTCCTGTGTCTAAG+AGG 0.537789 5_4:-5536318 Msa0832520:CDS
GCTATATTGTTGAGTTTGGA+TGG 0.539889 5_4:-5536490 Msa0832520:CDS
AGTAATGGAAACAAAATCTC+GGG 0.540576 5_4:+5534902 None:intergenic
TGCACTTGTAGCAGCAGATG+TGG 0.540700 5_4:-5533790 Msa0832520:CDS
GATTCTCTTCGATCACTCCC+TGG 0.541274 5_4:-5537144 Msa0832520:CDS
TGGCACAGACATTGCTATTG+AGG 0.544713 5_4:-5533751 Msa0832520:CDS
AGCAAGCTCAAAGCTGTCCA+TGG 0.545005 5_4:+5535891 None:intergenic
TGTACTAATGAAGAGCAACT+TGG 0.545258 5_4:-5533718 Msa0832520:CDS
ATAGCAGCTCCAGCGATCCA+AGG 0.546487 5_4:+5533552 None:intergenic
CATTACTGGACATGGAGTAA+AGG 0.547296 5_4:-5534886 Msa0832520:CDS
CACCCGAAAATGAACTGCAC+TGG 0.547314 5_4:+5536781 None:intergenic
ACATCTGCTGCTACAAGTGC+AGG 0.550045 5_4:+5533792 None:intergenic
CCGTCGAGAAATCCATCAAA+CGG 0.551690 5_4:-5538675 Msa0832520:CDS
TCACCTTTCCTCTTAGACAC+AGG 0.555392 5_4:+5536310 None:intergenic
GGCTCCAACAACTCCAGGAA+GGG 0.555414 5_4:+5537359 None:intergenic
CAATCGTCATGTATGATCAA+AGG 0.557472 5_4:+5533414 None:intergenic
GCAAACAACACTGACAGAAG+AGG 0.559172 5_4:+5533524 None:intergenic
TCTCTTCTTCCACCTTCACT+GGG 0.559842 5_4:+5536988 None:intergenic
TCTGATGGGCTTGTTGTTTG+GGG 0.559897 5_4:-5536376 Msa0832520:CDS
AAAATATTTCCCAGTGAAGG+TGG 0.561487 5_4:-5536997 Msa0832520:CDS
AGTAGATCTTCAGCAACAGC+AGG 0.561622 5_4:+5534795 None:intergenic
CTTATAAAGCAGACATAACA+GGG 0.566000 5_4:-5537074 Msa0832520:CDS
CATTATTTGCTTGTTACGAA+CGG 0.566291 5_4:+5534860 None:intergenic
TCAACAACGGCCTTAGCTAG+TGG 0.566415 5_4:+5534972 None:intergenic
ACTGCTGTTATGGTTGGCAC+TGG 0.566537 5_4:-5535805 Msa0832520:CDS
ATGGTGTTTATGTATATACC+TGG 0.568017 5_4:-5536880 Msa0832520:CDS
CTCGGGCTTCTGGCCAAGAA+GGG 0.570108 5_4:+5534919 None:intergenic
ACTAATGAAGAGCAACTTGG+AGG 0.572225 5_4:-5533715 Msa0832520:CDS
ACTGGAGTTGGTGCATCTCA+GGG 0.572906 5_4:-5535787 Msa0832520:CDS
CAGGGTGTATTGATCAAAGG+AGG 0.574494 5_4:-5535769 Msa0832520:CDS
CAGTGAACATCCACTAGCTA+AGG 0.574741 5_4:-5534982 Msa0832520:CDS
ACACCTACTGCTGTTATGGT+TGG 0.577479 5_4:-5535811 Msa0832520:CDS
TGTAGCAGCAGATGTGGGAA+TGG 0.580641 5_4:-5533784 Msa0832520:CDS
AGTAGCTTTAGCAACAGAAG+AGG 0.581864 5_4:-5537334 Msa0832520:CDS
GGGCTCCAACAACTCCAGGA+AGG 0.582459 5_4:+5537358 None:intergenic
AAGCAGACATAACAGGGCCA+AGG 0.582491 5_4:-5537068 Msa0832520:CDS
CTATGATAAGAAGTTAATGA+AGG 0.583011 5_4:-5533290 Msa0832520:three_prime_UTR
CGAAGGGAATGTTGTTGGGG+AGG 0.585027 5_4:-5536467 Msa0832520:CDS
TGGCGAAGGGAATGTTGTTG+GGG 0.586516 5_4:-5536470 Msa0832520:CDS
ACTTGGGCTCCAACAACTCC+AGG 0.586558 5_4:+5537354 None:intergenic
AACTGCTAATTCCATTGCAA+GGG 0.588246 5_4:-5534604 Msa0832520:CDS
CCAAAGCCCAAACATAATTG+AGG 0.588978 5_4:+5533643 None:intergenic
GTGGCTAAACCCAAAGCACA+AGG 0.589800 5_4:+5535832 None:intergenic
TGGTGAGATCGCCTTCCACA+TGG 0.590453 5_4:+5537193 None:intergenic
ACTTGCTGAAGCCGAAAACA+TGG 0.591432 5_4:-5534775 Msa0832520:CDS
CCGTTTGATGGATTTCTCGA+CGG 0.591741 5_4:+5538675 None:intergenic
GGTGGAACTTTGAATGAGAA+TGG 0.592551 5_4:-5536277 Msa0832520:CDS
ATGGAGGTTTCGAAAGTCAC+CGG 0.592674 5_4:-5538742 Msa0832520:CDS
GTGATTGTAGAAACTAGTAA+TGG 0.593567 5_4:-5537033 Msa0832520:CDS
TTGTTGAGTTTGGATGGCGA+AGG 0.594736 5_4:-5536484 Msa0832520:CDS
GGGTACACGGTGGCTATGGT+CGG 0.595035 5_4:-5533834 Msa0832520:CDS
AACCATAACAGCAGTAGGTG+TGG 0.596571 5_4:+5535813 None:intergenic
TATGAAAATTAGGAGCATCA+TGG 0.598156 5_4:-5534646 Msa0832520:CDS
GTGGGAATGGCAATAGGTGC+TGG 0.599052 5_4:-5533771 Msa0832520:CDS
AGCAGACATAACAGGGCCAA+GGG 0.601857 5_4:-5537067 Msa0832520:CDS
ATATCTGATCCACTGAAACC+AGG 0.604258 5_4:-5534699 Msa0832520:CDS
GGTGACTTTCGAAACCTCCA+TGG 0.605534 5_4:+5538744 None:intergenic
TAGTTACGTTAACAAAAGAA+GGG 0.608960 5_4:+5538590 None:intergenic
TCTCAGGGTGTATTGATCAA+AGG 0.609729 5_4:-5535772 Msa0832520:CDS
TTCTTACCCCAAAGACGAGG+CGG 0.609821 5_4:-5538791 Msa0832520:CDS
GCGAAAATATTTCCCAGTGA+AGG 0.609868 5_4:-5537000 Msa0832520:CDS
AAAATCGATCTCCATGTGGA+AGG 0.611046 5_4:-5537204 Msa0832520:CDS
GAACTGCTAATTCCATTGCA+AGG 0.612986 5_4:-5534605 Msa0832520:CDS
TCAAAGCTGTCCATGGAAGA+CGG 0.613051 5_4:+5535898 None:intergenic
AAACCTCCATGGACGAAGCG+GGG 0.613852 5_4:+5538755 None:intergenic
GAAGATGCTTACTATTGGAG+AGG 0.619198 5_4:-5536827 Msa0832520:CDS
ATAGGAGGAGGCTATTTGTG+AGG 0.619468 5_4:-5537517 Msa0832520:intron
GTGCCAACCATAACAGCAGT+AGG 0.620470 5_4:+5535808 None:intergenic
CGTAACAAGCAAATAATGGT+CGG 0.624159 5_4:-5534855 Msa0832520:CDS
TATTTGCTTGTTACGAACGG+TGG 0.624706 5_4:+5534863 None:intergenic
TGTCCTGTGTCTAAGAGGAA+AGG 0.625335 5_4:-5536313 Msa0832520:CDS
CTTCCCAATAGTAAGAGTAC+CGG 0.625745 5_4:+5535306 None:intergenic
TGTGAGGCAATTGAAGACGC+TGG 0.626299 5_4:-5537501 Msa0832520:CDS
TAGAGCTGATTCAACCGCGG+TGG 0.632104 5_4:+5537386 None:intergenic
TATAAATGGGGAAGTAGCTG+GGG 0.633789 5_4:-5534730 Msa0832520:CDS
GATGTAAGCAGAAAACAACT+TGG 0.633965 5_4:-5533268 Msa0832520:three_prime_UTR
TGAACTTGTTGCTGCAGCTG+AGG 0.636560 5_4:-5535230 Msa0832520:intron
GCACTTGTAGCAGCAGATGT+GGG 0.637701 5_4:-5533789 Msa0832520:CDS
CTTACCCCAAAGACGAGGCG+GGG 0.641802 5_4:-5538789 Msa0832520:CDS
CTTGCATGTTAAGGCAACGA+AGG 0.645262 5_4:-5536251 Msa0832520:CDS
GCAGCTCCAGCGATCCAAGG+CGG 0.645327 5_4:+5533555 None:intergenic
GCTGAACAGCCTTGACATAG+GGG 0.650613 5_4:-5533463 Msa0832520:CDS
TCCATGAACAGAGAAAAGTC+CGG 0.650615 5_4:+5538723 None:intergenic
TGTGTAATTCTAAAACTCCA+GGG 0.652850 5_4:+5537127 None:intergenic
AAAGGTGATACTGTTATCGG+TGG 0.655577 5_4:-5536295 Msa0832520:CDS
GCCTTCTTACCCCAAAGACG+AGG 0.657096 5_4:-5538794 Msa0832520:CDS
CTGAACAGCCTTGACATAGG+GGG 0.658953 5_4:-5533462 Msa0832520:CDS
GCAACCGAAAGCCTGTAGAA+GGG 0.668289 5_4:+5533577 None:intergenic
AAGAAGGGTGAAAGATGACG+CGG 0.673224 5_4:+5538605 None:intergenic
TCTGTTAGGAAAGTATCTTG+AGG 0.673983 5_4:-5536575 Msa0832520:CDS
AGGGTGTATTGATCAAAGGA+GGG 0.674325 5_4:-5535768 Msa0832520:CDS
GCTTATAAATCATTGCGTCG+TGG 0.674394 5_4:-5536742 Msa0832520:CDS
ACGGTGGCTATGGTCGGCGA+CGG 0.683789 5_4:-5533828 Msa0832520:CDS
TGAAGACGCTGGATTTGACG+CGG 0.689222 5_4:-5537490 Msa0832520:CDS
ATGGATGTGCTGATAGCACT+GGG 0.694300 5_4:-5536709 Msa0832520:CDS
AGGTATATACATAAACACCA+TGG 0.708250 5_4:+5536882 None:intergenic
TGAGAGTATGATAACTGGTG+AGG 0.718574 5_4:-5536338 Msa0832520:CDS
TGGCTAAACCCAAAGCACAA+GGG 0.722049 5_4:+5535833 None:intergenic
AGAAGGGTGAAAGATGACGC+GGG 0.728287 5_4:+5538606 None:intergenic
AAGCAAAATCGATCTCCATG+TGG 0.735028 5_4:-5537208 Msa0832520:CDS
ATGCACGTCGTGTTCCACCG+CGG 0.778510 5_4:-5537400 Msa0832520:CDS
ATGGTGACTGGAGACAACTG+GGG 0.796917 5_4:-5534627 Msa0832520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATATAATGTTAAAAA+TGG - chr5_4:5536669-5536688 Msa0832520:CDS 10.0%
!! TAATAGACTAAATTATACTA+GGG + chr5_4:5534139-5534158 None:intergenic 15.0%
!!! TTTAATTTTATTTTCATAGG+AGG - chr5_4:5534613-5534632 Msa0832520:CDS 15.0%
!! CATATCATATCATTATAATA+TGG + chr5_4:5536047-5536066 None:intergenic 15.0%
!!! GAATTTTAGTATCTATAAAT+GGG - chr5_4:5537402-5537421 Msa0832520:CDS 15.0%
!!! AATTTTAGTATCTATAAATG+GGG - chr5_4:5537403-5537422 Msa0832520:CDS 15.0%
!! TCAATTATCTATAATTCTAT+AGG - chr5_4:5537833-5537852 Msa0832520:intron 15.0%
!!! TGTTATTATTTTCTATTTCA+AGG + chr5_4:5537914-5537933 None:intergenic 15.0%
!!! GTTTTTGATATAAACTATAA+AGG + chr5_4:5538022-5538041 None:intergenic 15.0%
!!! GTGATATTTTATTTTAAGTT+AGG - chr5_4:5538820-5538839 Msa0832520:CDS 15.0%
!!! AAGGAATATTTTGTGTATAA+TGG - chr5_4:5533854-5533873 Msa0832520:intron 20.0%
!!! ATATGTCCTTTAAGTTATTT+TGG + chr5_4:5534089-5534108 None:intergenic 20.0%
!! AATAGACTAAATTATACTAG+GGG + chr5_4:5534138-5534157 None:intergenic 20.0%
!! CTAATAGACTAAATTATACT+AGG + chr5_4:5534140-5534159 None:intergenic 20.0%
!! GTTCAAAATGCAAAATATAA+GGG - chr5_4:5534317-5534336 Msa0832520:intron 20.0%
!! CAACTCATATATAAATACTA+CGG + chr5_4:5534412-5534431 None:intergenic 20.0%
!!! TCATTCCTTTTATTTGTATA+CGG + chr5_4:5534724-5534743 None:intergenic 20.0%
!!! GCTATTACAAATCTTTTTTA+TGG - chr5_4:5535206-5535225 Msa0832520:intron 20.0%
!! ACCTGGAATAAAAAATTTAT+TGG - chr5_4:5535282-5535301 Msa0832520:CDS 20.0%
!!! TCCAATAAATTTTTTATTCC+AGG + chr5_4:5535286-5535305 None:intergenic 20.0%
!! TGGTATAATATAATTACCAA+AGG + chr5_4:5536027-5536046 None:intergenic 20.0%
!! TCAAGAAAATTGAATAGAAA+AGG + chr5_4:5536080-5536099 None:intergenic 20.0%
!! AATCTATTATTAACAAACAC+CGG + chr5_4:5536600-5536619 None:intergenic 20.0%
!!! ACTATCTATAAAAGTATTCA+TGG - chr5_4:5536730-5536749 Msa0832520:CDS 20.0%
!! TACAAAACTATTGACAAAAA+TGG - chr5_4:5536876-5536895 Msa0832520:CDS 20.0%
!!! CTCTTCATCTTTAAATTTTT+TGG + chr5_4:5537204-5537223 None:intergenic 20.0%
!!! GGAATTTTAGTATCTATAAA+TGG - chr5_4:5537401-5537420 Msa0832520:CDS 20.0%
!!! AATTTTCATAGACTTTAGAA+TGG + chr5_4:5537489-5537508 None:intergenic 20.0%
!!! TTCTAAAGTCTATGAAAATT+AGG - chr5_4:5537489-5537508 Msa0832520:CDS 20.0%
! GCAAAAAAATAAACCATCAA+TGG - chr5_4:5533252-5533271 Msa0832520:three_prime_UTR 25.0%
! TAGTTACGTTAACAAAAGAA+GGG + chr5_4:5533558-5533577 None:intergenic 25.0%
! TTAGTTACGTTAACAAAAGA+AGG + chr5_4:5533559-5533578 None:intergenic 25.0%
! TGCACAAAATGAATAAAAGA+GGG + chr5_4:5533592-5533611 None:intergenic 25.0%
! GTAGTTAAGTTTGTAAATGA+TGG - chr5_4:5533795-5533814 Msa0832520:CDS 25.0%
!!! ATGTTCTAAGATATCTGATA+AGG - chr5_4:5533955-5533974 Msa0832520:intron 25.0%
! GGTTCAAAATGCAAAATATA+AGG - chr5_4:5534316-5534335 Msa0832520:intron 25.0%
!!! TGCATTTCTTTTTAAGTTCT+AGG - chr5_4:5534346-5534365 Msa0832520:intron 25.0%
! CATATTACAAGAATCAAAAG+CGG + chr5_4:5534387-5534406 None:intergenic 25.0%
!!! AATTTTATTTTCATAGGAGG+AGG - chr5_4:5534616-5534635 Msa0832520:CDS 25.0%
!! AATTTTGTTGAATTCGAGAT+TGG + chr5_4:5535044-5535063 None:intergenic 25.0%
!! AACTAGTAATGGAAATTTGA+AGG - chr5_4:5535123-5535142 Msa0832520:intron 25.0%
! AAGAGATACTCATAGAAAAA+AGG - chr5_4:5535174-5535193 Msa0832520:intron 25.0%
!!! CAAATCTTTTTTATGGAGTT+TGG - chr5_4:5535213-5535232 Msa0832520:intron 25.0%
!! ATTCTGTTTATTCTGTTTTG+AGG - chr5_4:5535479-5535498 Msa0832520:intron 25.0%
!!! TTCTGTTTATTCTGTTTTGA+GGG - chr5_4:5535480-5535499 Msa0832520:intron 25.0%
! CTTATTTCGTTTATTCTGTT+AGG - chr5_4:5535556-5535575 Msa0832520:intron 25.0%
! TGATGTGATTAAGATTATTC+CGG - chr5_4:5535732-5535751 Msa0832520:intron 25.0%
!!! TATATGACAAATGGACTAAT+TGG + chr5_4:5536519-5536538 None:intergenic 25.0%
! TCCATTTGTCATATATGTTT+AGG - chr5_4:5536524-5536543 Msa0832520:CDS 25.0%
! TCCTAAACATATATGACAAA+TGG + chr5_4:5536528-5536547 None:intergenic 25.0%
! TTCTTCATATCAAATGAACA+TGG + chr5_4:5536577-5536596 None:intergenic 25.0%
!!! TCATGGTTTTACTTTTTATG+TGG - chr5_4:5536747-5536766 Msa0832520:CDS 25.0%
!!! AGTTTTGTATTTACTATCAC+TGG + chr5_4:5536865-5536884 None:intergenic 25.0%
!! ATTTTCTATAACTGTTACTG+AGG + chr5_4:5536978-5536997 None:intergenic 25.0%
! TCAAGTTATTGTCATAAACA+TGG - chr5_4:5537066-5537085 Msa0832520:CDS 25.0%
! TACTAATGATCACATCATTT+AGG - chr5_4:5537856-5537875 Msa0832520:intron 25.0%
! AAGGATTAAAATCTATGTCA+TGG + chr5_4:5537895-5537914 None:intergenic 25.0%
! AAAAGAGAAAAATAACTGTG+CGG + chr5_4:5537957-5537976 None:intergenic 25.0%
! TGATATAAACTATAAAGGCT+AGG + chr5_4:5538017-5538036 None:intergenic 25.0%
!! TTATTAATGTGTTGATGTGT+CGG - chr5_4:5538187-5538206 Msa0832520:intron 25.0%
!! CATACATTTTCTTCTTTTTC+AGG - chr5_4:5538283-5538302 Msa0832520:intron 25.0%
!! AGTTTTTCTTGAAAGATCAA+TGG + chr5_4:5538468-5538487 None:intergenic 25.0%
! ATTAACTTCTTATCATAGCA+TGG + chr5_4:5538853-5538872 None:intergenic 25.0%
! CTATGATAAGAAGTTAATGA+AGG - chr5_4:5538855-5538874 Msa0832520:CDS 25.0%
GCACAAAATGAATAAAAGAG+GGG + chr5_4:5533591-5533610 None:intergenic 30.0%
CTGCACAAAATGAATAAAAG+AGG + chr5_4:5533593-5533612 None:intergenic 30.0%
!! ATCATCGTTTTTGTTACGTT+TGG + chr5_4:5533752-5533771 None:intergenic 30.0%
!! GTTTGTAAATGATGGACATT+AGG - chr5_4:5533803-5533822 Msa0832520:CDS 30.0%
AGGATGTAAATTCTCATCAA+AGG - chr5_4:5533823-5533842 Msa0832520:CDS 30.0%
AGATATCTGATAAGGATACA+TGG - chr5_4:5533963-5533982 Msa0832520:intron 30.0%
ACGTTACAAAAACAATGATG+TGG + chr5_4:5534008-5534027 None:intergenic 30.0%
GTGTGACCAAAATAACTTAA+AGG - chr5_4:5534080-5534099 Msa0832520:intron 30.0%
!! CGCTTTTGATTCTTGTAATA+TGG - chr5_4:5534385-5534404 Msa0832520:intron 30.0%
ATTACAAACTGCTCTATAGT+TGG - chr5_4:5534470-5534489 Msa0832520:intron 30.0%
GTATGCCGTATACAAATAAA+AGG - chr5_4:5534716-5534735 Msa0832520:CDS 30.0%
!! TGTGTAATTCTAAAACTCCA+GGG + chr5_4:5535021-5535040 None:intergenic 30.0%
TCTTATAAAGCAGACATAAC+AGG - chr5_4:5535070-5535089 Msa0832520:intron 30.0%
CTTATAAAGCAGACATAACA+GGG - chr5_4:5535071-5535090 Msa0832520:intron 30.0%
ATCACATTAATGAAATCCCT+TGG + chr5_4:5535097-5535116 None:intergenic 30.0%
GTGATTGTAGAAACTAGTAA+TGG - chr5_4:5535112-5535131 Msa0832520:intron 30.0%
AGGTATATACATAAACACCA+TGG + chr5_4:5535266-5535285 None:intergenic 30.0%
ATGGTGTTTATGTATATACC+TGG - chr5_4:5535265-5535284 Msa0832520:CDS 30.0%
!!! TATCTTGAGGTTTTAGCTAA+GGG - chr5_4:5535583-5535602 Msa0832520:intron 30.0%
TACTGCTATATTGTTGAGTT+TGG - chr5_4:5535651-5535670 Msa0832520:intron 30.0%
GATGTGATTAAGATTATTCC+GGG - chr5_4:5535733-5535752 Msa0832520:intron 30.0%
AATGTCATTGACATGTAAGT+AGG + chr5_4:5536129-5536148 None:intergenic 30.0%
TTAATCTTCTATCGCTTTGT+AGG - chr5_4:5536147-5536166 Msa0832520:CDS 30.0%
! TCTTGATCTCATTTTCAACT+TGG - chr5_4:5536173-5536192 Msa0832520:CDS 30.0%
AAGGAGCTAATCTAATTCTA+AGG + chr5_4:5536439-5536458 None:intergenic 30.0%
GGCTAAAAATTGAACAATGA+TGG - chr5_4:5536488-5536507 Msa0832520:CDS 30.0%
GTTCATTTGATATGAAGAAC+CGG - chr5_4:5536578-5536597 Msa0832520:CDS 30.0%
CAGTCACAAACATATTCAAA+TGG + chr5_4:5536783-5536802 None:intergenic 30.0%
TATTGACAAAAATGGTACTC+CGG - chr5_4:5536884-5536903 Msa0832520:CDS 30.0%
! TTGTCATAAACATGGACTAT+AGG - chr5_4:5537074-5537093 Msa0832520:CDS 30.0%
!!! TTTTTTGGCATACTCAACAA+CGG + chr5_4:5537189-5537208 None:intergenic 30.0%
! AGTAATGGAAACAAAATCTC+GGG + chr5_4:5537246-5537265 None:intergenic 30.0%
! CAGTAATGGAAACAAAATCT+CGG + chr5_4:5537247-5537266 None:intergenic 30.0%
! CATTATTTGCTTGTTACGAA+CGG + chr5_4:5537288-5537307 None:intergenic 30.0%
CAAATAATGGTCGGTAATAA+GGG - chr5_4:5537299-5537318 Msa0832520:CDS 30.0%
!! TATGAAAATTAGGAGCATCA+TGG - chr5_4:5537499-5537518 Msa0832520:CDS 30.0%
AGATAAAGTGAAAAACTTGC+AGG - chr5_4:5537613-5537632 Msa0832520:intron 30.0%
AAGATGTCATACTTGATTTC+AGG + chr5_4:5537745-5537764 None:intergenic 30.0%
TTCATTAATTGTATTCCGCT+AGG + chr5_4:5537792-5537811 None:intergenic 30.0%
ACGCTTTCAATATGAATTGT+CGG + chr5_4:5538137-5538156 None:intergenic 30.0%
! ATTCATATTGAAAGCGTGTT+AGG - chr5_4:5538140-5538159 Msa0832520:intron 30.0%
TATACGCCTCAATTATGTTT+GGG - chr5_4:5538496-5538515 Msa0832520:intron 30.0%
TTCGTTTCGAAAACAAGCTA+AGG + chr5_4:5533290-5533309 None:intergenic 35.0%
!!! TTAGCTTGTTTTCGAAACGA+AGG - chr5_4:5533289-5533308 Msa0832520:three_prime_UTR 35.0%
TGACAATTAAGTCTGTGATG+TGG - chr5_4:5533773-5533792 Msa0832520:CDS 35.0%
! TGTATAATGGCTTCGATTTG+AGG - chr5_4:5533867-5533886 Msa0832520:intron 35.0%
TCATGAAGAATGACAATGAG+AGG - chr5_4:5533891-5533910 Msa0832520:intron 35.0%
CATGAAGAATGACAATGAGA+GGG - chr5_4:5533892-5533911 Msa0832520:intron 35.0%
CAAAGCCAGAAATCTAATCT+TGG - chr5_4:5534238-5534257 Msa0832520:intron 35.0%
GAACACCAAGATTAGATTTC+TGG + chr5_4:5534246-5534265 None:intergenic 35.0%
AGCGGTGCAAAAACAAATTA+GGG - chr5_4:5534294-5534313 Msa0832520:intron 35.0%
TTCTGTTGCTAAAGCTACTT+GGG + chr5_4:5534810-5534829 None:intergenic 35.0%
TGGCTATGAGTAATGATGTT+TGG + chr5_4:5534854-5534873 None:intergenic 35.0%
CATTACTCATAGCCAAATCT+TGG - chr5_4:5534859-5534878 Msa0832520:CDS 35.0%
GAGTTTGATCATGGCATTAT+TGG + chr5_4:5534975-5534994 None:intergenic 35.0%
!! GTGTGTAATTCTAAAACTCC+AGG + chr5_4:5535022-5535041 None:intergenic 35.0%
AAAATATTTCCCAGTGAAGG+TGG - chr5_4:5535148-5535167 Msa0832520:intron 35.0%
! TCCAGTTTTTCTAACTTCCA+TGG - chr5_4:5535246-5535265 Msa0832520:CDS 35.0%
ACCATGGAAGTTAGAAAAAC+TGG + chr5_4:5535250-5535269 None:intergenic 35.0%
ATCGTGAAGATGCTTACTAT+TGG - chr5_4:5535313-5535332 Msa0832520:CDS 35.0%
TATTGGAGAGGTTATTCGTT+GGG - chr5_4:5535330-5535349 Msa0832520:CDS 35.0%
!!! GCTACTTCTAAGGTTTTTGA+AGG - chr5_4:5535505-5535524 Msa0832520:intron 35.0%
!! TCTGTTAGGAAAGTATCTTG+AGG - chr5_4:5535570-5535589 Msa0832520:intron 35.0%
!!! GTATCTTGAGGTTTTAGCTA+AGG - chr5_4:5535582-5535601 Msa0832520:intron 35.0%
!!! ATCTTGAGGTTTTAGCTAAG+GGG - chr5_4:5535584-5535603 Msa0832520:intron 35.0%
CTCAACAATATAGCAGTATC+AGG + chr5_4:5535649-5535668 None:intergenic 35.0%
GCTATATTGTTGAGTTTGGA+TGG - chr5_4:5535655-5535674 Msa0832520:intron 35.0%
! GGAAGAAATTGATAGTAGGT+TGG - chr5_4:5535699-5535718 Msa0832520:intron 35.0%
! GTGAATGAGAGTATGATAAC+TGG - chr5_4:5535802-5535821 Msa0832520:CDS 35.0%
AGGAAAGGTGATACTGTTAT+CGG - chr5_4:5535847-5535866 Msa0832520:CDS 35.0%
TTCCAAATACTTTGTGCCTT+TGG - chr5_4:5536008-5536027 Msa0832520:intron 35.0%
! TACCAAAGGCACAAAGTATT+TGG + chr5_4:5536013-5536032 None:intergenic 35.0%
! ATATTTTCCAGCTAAGAACC+AGG + chr5_4:5536203-5536222 None:intergenic 35.0%
! TAGATTAGCTCCTTGAATCA+TGG - chr5_4:5536445-5536464 Msa0832520:CDS 35.0%
CACAGAAAATCCATGATTCA+AGG + chr5_4:5536458-5536477 None:intergenic 35.0%
! CATGGATTTTCTGTGAATGT+TGG - chr5_4:5536463-5536482 Msa0832520:CDS 35.0%
! GATTTTCTGTGAATGTTGGT+TGG - chr5_4:5536467-5536486 Msa0832520:CDS 35.0%
!! AAAATGGAGAAAGTGTTCCT+TGG - chr5_4:5536685-5536704 Msa0832520:CDS 35.0%
!!! TGCATTGTTTTTGACAAGAC+CGG - chr5_4:5536820-5536839 Msa0832520:CDS 35.0%
ATTGACAAAAATGGTACTCC+GGG - chr5_4:5536885-5536904 Msa0832520:CDS 35.0%
CAACAAGTTCATAGAATTCC+CGG + chr5_4:5536906-5536925 None:intergenic 35.0%
!! CGAGATTTTGTTTCCATTAC+TGG - chr5_4:5537245-5537264 Msa0832520:CDS 35.0%
TTTGTTTCCATTACTGGACA+TGG - chr5_4:5537251-5537270 Msa0832520:CDS 35.0%
CGTTCGTAACAAGCAAATAA+TGG - chr5_4:5537286-5537305 Msa0832520:CDS 35.0%
CGTAACAAGCAAATAATGGT+CGG - chr5_4:5537290-5537309 Msa0832520:CDS 35.0%
GCAAATAATGGTCGGTAATA+AGG - chr5_4:5537298-5537317 Msa0832520:CDS 35.0%
AACTGCTAATTCCATTGCAA+GGG - chr5_4:5537541-5537560 Msa0832520:intron 35.0%
ACTTTATCTGCTTTCTGATC+CGG + chr5_4:5537602-5537621 None:intergenic 35.0%
TAATTGTATTCCGCTAGGAT+AGG + chr5_4:5537787-5537806 None:intergenic 35.0%
!! AGAAGGATAATGGGATTTCT+TGG + chr5_4:5537991-5538010 None:intergenic 35.0%
!!! TTTCTTCTTTTTCAGGCTTC+TGG - chr5_4:5538290-5538309 Msa0832520:intron 35.0%
!!! TTCTTCTTTTTCAGGCTTCT+GGG - chr5_4:5538291-5538310 Msa0832520:intron 35.0%
TGTACTAATGAAGAGCAACT+TGG - chr5_4:5538427-5538446 Msa0832520:intron 35.0%
GTATACGCCTCAATTATGTT+TGG - chr5_4:5538495-5538514 Msa0832520:intron 35.0%
CTCAATTATGTTTGGGCTTT+GGG - chr5_4:5538503-5538522 Msa0832520:intron 35.0%
!! GCTTTGGGTTATAATTTGCT+TGG - chr5_4:5538518-5538537 Msa0832520:intron 35.0%
CAATCGTCATGTATGATCAA+AGG + chr5_4:5538734-5538753 None:intergenic 35.0%
GATGTAAGCAGAAAACAACT+TGG - chr5_4:5538877-5538896 Msa0832520:CDS 35.0%
GATAATAGCTTCGCCATTGA+TGG + chr5_4:5533268-5533287 None:intergenic 40.0%
!! CTTGTTTTCGAAACGAAGGA+TGG - chr5_4:5533293-5533312 Msa0832520:three_prime_UTR 40.0%
TCCATGAACAGAGAAAAGTC+CGG + chr5_4:5533425-5533444 None:intergenic 40.0%
AAATCCATCAAACGGCTACA+TGG - chr5_4:5533478-5533497 Msa0832520:CDS 40.0%
AATTCCATGTAGCCGTTTGA+TGG + chr5_4:5533485-5533504 None:intergenic 40.0%
CTCATCAAAGGAAGAGTTCA+AGG - chr5_4:5533835-5533854 Msa0832520:CDS 40.0%
! CTAGGGGTTCTTTAAGTTTG+AGG + chr5_4:5534122-5534141 None:intergenic 40.0%
GTGTTGAGTATTCGTGTTAG+TGG - chr5_4:5534215-5534234 Msa0832520:intron 40.0%
!!! CTAATTTGTTTTTGCACCGC+TGG + chr5_4:5534295-5534314 None:intergenic 40.0%
CAGCGGTGCAAAAACAAATT+AGG - chr5_4:5534293-5534312 Msa0832520:intron 40.0%
GCGGTGCAAAAACAAATTAG+GGG - chr5_4:5534295-5534314 Msa0832520:intron 40.0%
CAAGCAAAACGCAACAATGT+TGG + chr5_4:5534527-5534546 None:intergenic 40.0%
!!! TTTTAGAGCTGATTCAACCG+CGG + chr5_4:5534765-5534784 None:intergenic 40.0%
CTTCTGTTGCTAAAGCTACT+TGG + chr5_4:5534811-5534830 None:intergenic 40.0%
!! AGTAGCTTTAGCAACAGAAG+AGG - chr5_4:5534811-5534830 Msa0832520:CDS 40.0%
CATCTACAGCTTCCAAGATT+TGG + chr5_4:5534874-5534893 None:intergenic 40.0%
AAGCAAAATCGATCTCCATG+TGG - chr5_4:5534937-5534956 Msa0832520:CDS 40.0%
AAAATCGATCTCCATGTGGA+AGG - chr5_4:5534941-5534960 Msa0832520:CDS 40.0%
ATCTTCGACGAGTTTGATCA+TGG + chr5_4:5534984-5535003 None:intergenic 40.0%
GCGAAAATATTTCCCAGTGA+AGG - chr5_4:5535145-5535164 Msa0832520:intron 40.0%
GAAGATGCTTACTATTGGAG+AGG - chr5_4:5535318-5535337 Msa0832520:CDS 40.0%
CTATTGGAGAGGTTATTCGT+TGG - chr5_4:5535329-5535348 Msa0832520:CDS 40.0%
! ACACCAGTGCAGTTCATTTT+CGG - chr5_4:5535361-5535380 Msa0832520:intron 40.0%
! TTCGGGTGGCGATTTTATAT+TGG - chr5_4:5535379-5535398 Msa0832520:intron 40.0%
GCTTATAAATCATTGCGTCG+TGG - chr5_4:5535403-5535422 Msa0832520:intron 40.0%
! GGGAGGAAGAAATTGATAGT+AGG - chr5_4:5535695-5535714 Msa0832520:intron 40.0%
GTGCAAAAGTTGCTTCTGAT+GGG - chr5_4:5535755-5535774 Msa0832520:CDS 40.0%
!! TTCTGATGGGCTTGTTGTTT+GGG - chr5_4:5535768-5535787 Msa0832520:CDS 40.0%
! TGAGAGTATGATAACTGGTG+AGG - chr5_4:5535807-5535826 Msa0832520:CDS 40.0%
AAAGGTGATACTGTTATCGG+TGG - chr5_4:5535850-5535869 Msa0832520:CDS 40.0%
GGTGGAACTTTGAATGAGAA+TGG - chr5_4:5535868-5535887 Msa0832520:CDS 40.0%
GAATGGTGTCTTGCATGTTA+AGG - chr5_4:5535885-5535904 Msa0832520:CDS 40.0%
! ACTTGTTGAGTCTGCTCAAA+TGG - chr5_4:5535951-5535970 Msa0832520:CDS 40.0%
AAATGCGATCAGCAAACTTC+TGG + chr5_4:5535990-5536009 None:intergenic 40.0%
! GCAGTTTGGAATTTCTGTCA+TGG - chr5_4:5536279-5536298 Msa0832520:CDS 40.0%
! TCTCAGGGTGTATTGATCAA+AGG - chr5_4:5536373-5536392 Msa0832520:CDS 40.0%
! AGGGTGTATTGATCAAAGGA+GGG - chr5_4:5536377-5536396 Msa0832520:CDS 40.0%
!! AGCTTTGGAAAGTGCACATA+AGG - chr5_4:5536402-5536421 Msa0832520:CDS 40.0%
!! GACAAATGGACTAATTGGCA+TGG + chr5_4:5536514-5536533 None:intergenic 40.0%
TATGCTGCAACAAGTATCCA+AGG + chr5_4:5536705-5536724 None:intergenic 40.0%
! GTTTGTGACTGTCTTGTTGT+AGG - chr5_4:5536792-5536811 Msa0832520:CDS 40.0%
AAGACCGGTACTCTTACTAT+TGG - chr5_4:5536835-5536854 Msa0832520:CDS 40.0%
AGACCGGTACTCTTACTATT+GGG - chr5_4:5536836-5536855 Msa0832520:CDS 40.0%
! CTTCCCAATAGTAAGAGTAC+CGG + chr5_4:5536842-5536861 None:intergenic 40.0%
!! TCAGCCTTTTAGAAGGAGAT+GGG + chr5_4:5536954-5536973 None:intergenic 40.0%
! AACTGTTGTTTGTCCATCTC+AGG - chr5_4:5537136-5537155 Msa0832520:CDS 40.0%
AAGATGAAGAGAACCCTTCT+TGG - chr5_4:5537213-5537232 Msa0832520:CDS 40.0%
CTTTACTCCATGTCCAGTAA+TGG + chr5_4:5537261-5537280 None:intergenic 40.0%
CATTACTGGACATGGAGTAA+AGG - chr5_4:5537259-5537278 Msa0832520:CDS 40.0%
! TATTTGCTTGTTACGAACGG+TGG + chr5_4:5537285-5537304 None:intergenic 40.0%
! TCCTGTTTGAGCCATGTTTT+CGG + chr5_4:5537384-5537403 None:intergenic 40.0%
TCTATAAATGGGGAAGTAGC+TGG - chr5_4:5537413-5537432 Msa0832520:CDS 40.0%
CTATAAATGGGGAAGTAGCT+GGG - chr5_4:5537414-5537433 Msa0832520:CDS 40.0%
TATAAATGGGGAAGTAGCTG+GGG - chr5_4:5537415-5537434 Msa0832520:CDS 40.0%
ATATCTGATCCACTGAAACC+AGG - chr5_4:5537446-5537465 Msa0832520:CDS 40.0%
GAACTGCTAATTCCATTGCA+AGG - chr5_4:5537540-5537559 Msa0832520:intron 40.0%
AATTCCATTGCAAGGGAAGT+TGG - chr5_4:5537548-5537567 Msa0832520:intron 40.0%
AATTCCAACTTCCCTTGCAA+TGG + chr5_4:5537555-5537574 None:intergenic 40.0%
TGTTATTGCTGAAGCCAAAC+CGG - chr5_4:5537580-5537599 Msa0832520:intron 40.0%
TTCAGGAGATGATAGTTGTC+AGG + chr5_4:5537728-5537747 None:intergenic 40.0%
CAGTAACAATCCTATCCTAG+CGG - chr5_4:5537774-5537793 Msa0832520:intron 40.0%
GCTAGGAACAGAAGGATAAT+GGG + chr5_4:5538000-5538019 None:intergenic 40.0%
CTATAAAGGCTAGGAACAGA+AGG + chr5_4:5538008-5538027 None:intergenic 40.0%
ACAAACACCAGAGATGATAG+TGG + chr5_4:5538215-5538234 None:intergenic 40.0%
ACTAATGAAGAGCAACTTGG+AGG - chr5_4:5538430-5538449 Msa0832520:intron 40.0%
CCAAAGCCCAAACATAATTG+AGG + chr5_4:5538505-5538524 None:intergenic 40.0%
CCTCAATTATGTTTGGGCTT+TGG - chr5_4:5538502-5538521 Msa0832520:intron 40.0%
AAAAGAACTCCAGCTGCTAT+TGG + chr5_4:5538548-5538567 None:intergenic 40.0%
! TTTTCCCTTCTACAGGCTTT+CGG - chr5_4:5538564-5538583 Msa0832520:intron 40.0%
!! TTGGGGTAAGAAGGCATTGA+AGG + chr5_4:5533346-5533365 None:intergenic 45.0%
ATGGAGGTTTCGAAAGTCAC+CGG - chr5_4:5533403-5533422 Msa0832520:exon 45.0%
! ACCGGACTTTTCTCTGTTCA+TGG - chr5_4:5533421-5533440 Msa0832520:CDS 45.0%
!! CCGTTTGATGGATTTCTCGA+CGG + chr5_4:5533473-5533492 None:intergenic 45.0%
CCGTCGAGAAATCCATCAAA+CGG - chr5_4:5533470-5533489 Msa0832520:CDS 45.0%
AAGAAGGGTGAAAGATGACG+CGG + chr5_4:5533543-5533562 None:intergenic 45.0%
! GTTCTTGACCTTTTGTCCAG+CGG - chr5_4:5534276-5534295 Msa0832520:intron 45.0%
! TTTTTGCACCGCTGGACAAA+AGG + chr5_4:5534287-5534306 None:intergenic 45.0%
CAAGAATCAAAAGCGGAGCT+AGG + chr5_4:5534380-5534399 None:intergenic 45.0%
TGCTCTATAGTTGGAGACGT+TGG - chr5_4:5534479-5534498 Msa0832520:intron 45.0%
ATAGGAGGAGGCTATTTGTG+AGG - chr5_4:5534628-5534647 Msa0832520:CDS 45.0%
TTGGAAGCTGTAGATGAAGC+TGG - chr5_4:5534878-5534897 Msa0832520:CDS 45.0%
TCTCTTCTTCCACCTTCACT+GGG + chr5_4:5535160-5535179 None:intergenic 45.0%
ATCTCTTCTTCCACCTTCAC+TGG + chr5_4:5535161-5535180 None:intergenic 45.0%
! CACCAGTGCAGTTCATTTTC+GGG - chr5_4:5535362-5535381 Msa0832520:intron 45.0%
! TATGGATGTGCTGATAGCAC+TGG - chr5_4:5535435-5535454 Msa0832520:intron 45.0%
! ATGGATGTGCTGATAGCACT+GGG - chr5_4:5535436-5535455 Msa0832520:intron 45.0%
! TTTGAGGGCTGCTACTTCTA+AGG - chr5_4:5535495-5535514 Msa0832520:intron 45.0%
TTGTTGAGTTTGGATGGCGA+AGG - chr5_4:5535661-5535680 Msa0832520:intron 45.0%
TGTTGAGTTTGGATGGCGAA+GGG - chr5_4:5535662-5535681 Msa0832520:intron 45.0%
ATGGCGAAGGGAATGTTGTT+GGG - chr5_4:5535674-5535693 Msa0832520:intron 45.0%
! TCAGAAGCAACTTTTGCACC+CGG + chr5_4:5535754-5535773 None:intergenic 45.0%
GGTGCAAAAGTTGCTTCTGA+TGG - chr5_4:5535754-5535773 Msa0832520:CDS 45.0%
!! CTTCTGATGGGCTTGTTGTT+TGG - chr5_4:5535767-5535786 Msa0832520:CDS 45.0%
!! TCTGATGGGCTTGTTGTTTG+GGG - chr5_4:5535769-5535788 Msa0832520:CDS 45.0%
TGTCCTGTGTCTAAGAGGAA+AGG - chr5_4:5535832-5535851 Msa0832520:CDS 45.0%
TCACCTTTCCTCTTAGACAC+AGG + chr5_4:5535838-5535857 None:intergenic 45.0%
CTTGCATGTTAAGGCAACGA+AGG - chr5_4:5535894-5535913 Msa0832520:CDS 45.0%
CATGTTAAGGCAACGAAGGT+TGG - chr5_4:5535898-5535917 Msa0832520:CDS 45.0%
!!! CATTTTCAACTTGGCTTGCC+TGG - chr5_4:5536182-5536201 Msa0832520:CDS 45.0%
ATCATGCTTACCCGAAATCC+TGG - chr5_4:5536221-5536240 Msa0832520:CDS 45.0%
AAGACGGTATCCAGGATTTC+GGG + chr5_4:5536234-5536253 None:intergenic 45.0%
GAAGACGGTATCCAGGATTT+CGG + chr5_4:5536235-5536254 None:intergenic 45.0%
TCAAAGCTGTCCATGGAAGA+CGG + chr5_4:5536250-5536269 None:intergenic 45.0%
! TTTGAGCTTGCTCTGCAGTT+TGG - chr5_4:5536265-5536284 Msa0832520:CDS 45.0%
TGGCTAAACCCAAAGCACAA+GGG + chr5_4:5536315-5536334 None:intergenic 45.0%
AACCATAACAGCAGTAGGTG+TGG + chr5_4:5536335-5536354 None:intergenic 45.0%
ACACCTACTGCTGTTATGGT+TGG - chr5_4:5536334-5536353 Msa0832520:CDS 45.0%
! CAGGGTGTATTGATCAAAGG+AGG - chr5_4:5536376-5536395 Msa0832520:CDS 45.0%
!! AGCCTTTTAGAAGGAGATGG+GGG + chr5_4:5536952-5536971 None:intergenic 45.0%
!! CAGCCTTTTAGAAGGAGATG+GGG + chr5_4:5536953-5536972 None:intergenic 45.0%
!! CTCAGCCTTTTAGAAGGAGA+TGG + chr5_4:5536955-5536974 None:intergenic 45.0%
TGTTCACTGTTCACCTGAGA+TGG + chr5_4:5537152-5537171 None:intergenic 45.0%
CAGTGAACATCCACTAGCTA+AGG - chr5_4:5537163-5537182 Msa0832520:CDS 45.0%
GAAACAAAATCTCGGGCTTC+TGG + chr5_4:5537239-5537258 None:intergenic 45.0%
AGTAGATCTTCAGCAACAGC+AGG + chr5_4:5537353-5537372 None:intergenic 45.0%
! ACTTGCTGAAGCCGAAAACA+TGG - chr5_4:5537370-5537389 Msa0832520:CDS 45.0%
GAAATCACTTCTTGAGCACC+TGG + chr5_4:5537467-5537486 None:intergenic 45.0%
!! ATTAGGAGCATCATGGTGAC+TGG - chr5_4:5537506-5537525 Msa0832520:CDS 45.0%
ATCTGCTTTCTGATCCGGTT+TGG + chr5_4:5537597-5537616 None:intergenic 45.0%
GGCTAGGAACAGAAGGATAA+TGG + chr5_4:5538001-5538020 None:intergenic 45.0%
!! TTTTCAGGCTTCTGGGTACA+CGG - chr5_4:5538298-5538317 Msa0832520:intron 45.0%
! TGGCACAGACATTGCTATTG+AGG - chr5_4:5538394-5538413 Msa0832520:intron 45.0%
! GGAGTTCTTTTCCCTTCTAC+AGG - chr5_4:5538557-5538576 Msa0832520:intron 45.0%
GCAAACAACACTGACAGAAG+AGG + chr5_4:5538624-5538643 None:intergenic 45.0%
TCAAGGCTGTTCAGCTTCTT+GGG + chr5_4:5538677-5538696 None:intergenic 45.0%
AAGCTGAACAGCCTTGACAT+AGG - chr5_4:5538680-5538699 Msa0832520:CDS 45.0%
AGCTGAACAGCCTTGACATA+GGG - chr5_4:5538681-5538700 Msa0832520:CDS 45.0%
TCAATATGCCCCCTATGTCA+AGG + chr5_4:5538694-5538713 None:intergenic 45.0%
CTAGCTGCACACAGTAGAAA+TGG + chr5_4:5538780-5538799 None:intergenic 45.0%
CATTTCTACTGTGTGCAGCT+AGG - chr5_4:5538778-5538797 Msa0832520:CDS 45.0%
!!! TTATTTAATTTTATTTTCAT+AGG - chr5_4:5534610-5534629 Msa0832520:CDS 5.0%
TTCTTACCCCAAAGACGAGG+CGG - chr5_4:5533354-5533373 Msa0832520:three_prime_UTR 50.0%
GGTGACTTTCGAAACCTCCA+TGG + chr5_4:5533404-5533423 None:intergenic 50.0%
AGAAGGGTGAAAGATGACGC+GGG + chr5_4:5533542-5533561 None:intergenic 50.0%
GACAATGAGAGGGTCAGAGT+TGG - chr5_4:5533902-5533921 Msa0832520:intron 50.0%
GTTGGAGACGTTGGCATACT+AGG - chr5_4:5534488-5534507 Msa0832520:intron 50.0%
TGTGAGGCAATTGAAGACGC+TGG - chr5_4:5534644-5534663 Msa0832520:CDS 50.0%
TGAAGACGCTGGATTTGACG+CGG - chr5_4:5534655-5534674 Msa0832520:CDS 50.0%
!! TCAGCTCTAAAAGCCCTTCC+TGG - chr5_4:5534773-5534792 Msa0832520:CDS 50.0%
AAAGCCCTTCCTGGAGTTGT+TGG - chr5_4:5534782-5534801 Msa0832520:CDS 50.0%
GATTCTCTTCGATCACTCCC+TGG - chr5_4:5535001-5535020 Msa0832520:intron 50.0%
AAGCAGACATAACAGGGCCA+AGG - chr5_4:5535077-5535096 Msa0832520:intron 50.0%
AGCAGACATAACAGGGCCAA+GGG - chr5_4:5535078-5535097 Msa0832520:intron 50.0%
CACCCGAAAATGAACTGCAC+TGG + chr5_4:5535367-5535386 None:intergenic 50.0%
!! CAGTGCAGTTCATTTTCGGG+TGG - chr5_4:5535365-5535384 Msa0832520:intron 50.0%
! GCGTCGTGGTTCTGCTAATA+TGG - chr5_4:5535417-5535436 Msa0832520:intron 50.0%
GATGGCGAAGGGAATGTTGT+TGG - chr5_4:5535673-5535692 Msa0832520:intron 50.0%
TGGCGAAGGGAATGTTGTTG+GGG - chr5_4:5535675-5535694 Msa0832520:intron 50.0%
AGGCATGTCCTGTGTCTAAG+AGG - chr5_4:5535827-5535846 Msa0832520:CDS 50.0%
CGATCAGCAAACTTCTGGAC+AGG + chr5_4:5535985-5536004 None:intergenic 50.0%
ATCCTGGATACCGTCTTCCA+TGG - chr5_4:5536237-5536256 Msa0832520:CDS 50.0%
AGCAAGCTCAAAGCTGTCCA+TGG + chr5_4:5536257-5536276 None:intergenic 50.0%
TATTGCCTGCCCTTGTGCTT+TGG - chr5_4:5536303-5536322 Msa0832520:CDS 50.0%
ATTGCCTGCCCTTGTGCTTT+GGG - chr5_4:5536304-5536323 Msa0832520:CDS 50.0%
TAAACCCAAAGCACAAGGGC+AGG + chr5_4:5536311-5536330 None:intergenic 50.0%
GTGGCTAAACCCAAAGCACA+AGG + chr5_4:5536316-5536335 None:intergenic 50.0%
AGCCACACCTACTGCTGTTA+TGG - chr5_4:5536330-5536349 Msa0832520:CDS 50.0%
GTGCCAACCATAACAGCAGT+AGG + chr5_4:5536340-5536359 None:intergenic 50.0%
ACTGCTGTTATGGTTGGCAC+TGG - chr5_4:5536340-5536359 Msa0832520:CDS 50.0%
! GTTATGGTTGGCACTGGAGT+TGG - chr5_4:5536346-5536365 Msa0832520:CDS 50.0%
!! ACTGGAGTTGGTGCATCTCA+GGG - chr5_4:5536358-5536377 Msa0832520:CDS 50.0%
GATCAAAGGAGGGCAAGCTT+TGG - chr5_4:5536387-5536406 Msa0832520:CDS 50.0%
!! TGAACTTGTTGCTGCAGCTG+AGG - chr5_4:5536915-5536934 Msa0832520:CDS 50.0%
!! GCCTTTTAGAAGGAGATGGG+GGG + chr5_4:5536951-5536970 None:intergenic 50.0%
! CTGAGGCTCAGCCTTTTAGA+AGG + chr5_4:5536961-5536980 None:intergenic 50.0%
TCAACAACGGCCTTAGCTAG+TGG + chr5_4:5537176-5537195 None:intergenic 50.0%
GGTCGGTAATAAGGGCTTGA+TGG - chr5_4:5537307-5537326 Msa0832520:CDS 50.0%
GCCGAAAACATGGCTCAAAC+AGG - chr5_4:5537380-5537399 Msa0832520:CDS 50.0%
TCTTGAGCACCTGGTTTCAG+TGG + chr5_4:5537458-5537477 None:intergenic 50.0%
TCATGGTGACTGGAGACAAC+TGG - chr5_4:5537516-5537535 Msa0832520:CDS 50.0%
CATGGTGACTGGAGACAACT+GGG - chr5_4:5537517-5537536 Msa0832520:intron 50.0%
ATGGTGACTGGAGACAACTG+GGG - chr5_4:5537518-5537537 Msa0832520:intron 50.0%
ACATCTGCTGCTACAAGTGC+AGG + chr5_4:5538356-5538375 None:intergenic 50.0%
TGCACTTGTAGCAGCAGATG+TGG - chr5_4:5538355-5538374 Msa0832520:intron 50.0%
GCACTTGTAGCAGCAGATGT+GGG - chr5_4:5538356-5538375 Msa0832520:intron 50.0%
TGTAGCAGCAGATGTGGGAA+TGG - chr5_4:5538361-5538380 Msa0832520:intron 50.0%
GCAGATGTGGGAATGGCAAT+AGG - chr5_4:5538368-5538387 Msa0832520:intron 50.0%
CTTGGCATTCCAATAGCAGC+TGG - chr5_4:5538536-5538555 Msa0832520:intron 50.0%
GCAACCGAAAGCCTGTAGAA+GGG + chr5_4:5538571-5538590 None:intergenic 50.0%
GTCAAGGCTGTTCAGCTTCT+TGG + chr5_4:5538678-5538697 None:intergenic 50.0%
GCTGAACAGCCTTGACATAG+GGG - chr5_4:5538682-5538701 Msa0832520:CDS 50.0%
CTGAACAGCCTTGACATAGG+GGG - chr5_4:5538683-5538702 Msa0832520:CDS 50.0%
GCCTTCTTACCCCAAAGACG+AGG - chr5_4:5533351-5533370 Msa0832520:three_prime_UTR 55.0%
!! GCCTCGTCTTTGGGGTAAGA+AGG + chr5_4:5533355-5533374 None:intergenic 55.0%
TCTTACCCCAAAGACGAGGC+GGG - chr5_4:5533355-5533374 Msa0832520:three_prime_UTR 55.0%
AAACCTCCATGGACGAAGCG+GGG + chr5_4:5533393-5533412 None:intergenic 55.0%
GAAACCTCCATGGACGAAGC+GGG + chr5_4:5533394-5533413 None:intergenic 55.0%
CGAAACCTCCATGGACGAAG+CGG + chr5_4:5533395-5533414 None:intergenic 55.0%
GGTGAAAGATGACGCGGGTA+CGG + chr5_4:5533537-5533556 None:intergenic 55.0%
! GAGGGTCAGAGTTGGTTGCA+AGG - chr5_4:5533910-5533929 Msa0832520:intron 55.0%
! TAGAGCTGATTCAACCGCGG+TGG + chr5_4:5534762-5534781 None:intergenic 55.0%
GGCTCCAACAACTCCAGGAA+GGG + chr5_4:5534789-5534808 None:intergenic 55.0%
ACTTGGGCTCCAACAACTCC+AGG + chr5_4:5534794-5534813 None:intergenic 55.0%
TGGTGAGATCGCCTTCCACA+TGG + chr5_4:5534955-5534974 None:intergenic 55.0%
CGAAGGGAATGTTGTTGGGG+AGG - chr5_4:5535678-5535697 Msa0832520:intron 55.0%
! TGGCTTGCCTGGTTCTTAGC+TGG - chr5_4:5536193-5536212 Msa0832520:CDS 55.0%
GTCCATGGAAGACGGTATCC+AGG + chr5_4:5536242-5536261 None:intergenic 55.0%
!! CACTGGAGTTGGTGCATCTC+AGG - chr5_4:5536357-5536376 Msa0832520:CDS 55.0%
GCCCCCCATCTCCTTCTAAA+AGG - chr5_4:5536947-5536966 Msa0832520:CDS 55.0%
!! GTCGGTGCCACTATCATCTC+TGG - chr5_4:5538205-5538224 Msa0832520:intron 55.0%
TTCTGGGTACACGGTGGCTA+TGG - chr5_4:5538307-5538326 Msa0832520:intron 55.0%
GTGGGAATGGCAATAGGTGC+TGG - chr5_4:5538374-5538393 Msa0832520:intron 55.0%
GGCAACCGAAAGCCTGTAGA+AGG + chr5_4:5538572-5538591 None:intergenic 55.0%
ATAGCAGCTCCAGCGATCCA+AGG + chr5_4:5538596-5538615 None:intergenic 55.0%
TTGGATCGCTGGAGCTGCTA+TGG - chr5_4:5538595-5538614 Msa0832520:intron 55.0%
CTTACCCCAAAGACGAGGCG+GGG - chr5_4:5533356-5533375 Msa0832520:three_prime_UTR 60.0%
!! ATGACTTGCTCCGCTTGCGC+TGG - chr5_4:5533445-5533464 Msa0832520:CDS 60.0%
ATGCACGTCGTGTTCCACCG+CGG - chr5_4:5534745-5534764 Msa0832520:CDS 60.0%
GGGCTCCAACAACTCCAGGA+AGG + chr5_4:5534790-5534809 None:intergenic 60.0%
CTCGGGCTTCTGGCCAAGAA+GGG + chr5_4:5537229-5537248 None:intergenic 60.0%
TCTCGGGCTTCTGGCCAAGA+AGG + chr5_4:5537230-5537249 None:intergenic 60.0%
TCAGGCTTCTGGGTACACGG+TGG - chr5_4:5538301-5538320 Msa0832520:intron 60.0%
GGGTACACGGTGGCTATGGT+CGG - chr5_4:5538311-5538330 Msa0832520:intron 60.0%
TGGTCCCCGCCTCGTCTTTG+GGG + chr5_4:5533363-5533382 None:intergenic 65.0%
CTGGTCCCCGCCTCGTCTTT+GGG + chr5_4:5533364-5533383 None:intergenic 65.0%
ACTGGTCCCCGCCTCGTCTT+TGG + chr5_4:5533365-5533384 None:intergenic 65.0%
CTCGACGGATCCAGCGCAAG+CGG + chr5_4:5533458-5533477 None:intergenic 65.0%
ACGGTGGCTATGGTCGGCGA+CGG - chr5_4:5538317-5538336 Msa0832520:intron 65.0%
CAGGCTTTCGGTTGCCGCCT+TGG - chr5_4:5538576-5538595 Msa0832520:intron 65.0%
GCAGCTCCAGCGATCCAAGG+CGG + chr5_4:5538593-5538612 None:intergenic 65.0%
GACGAGGCGGGGACCAGTAC+CGG - chr5_4:5533367-5533386 Msa0832520:three_prime_UTR 70.0%
TACCGGCCCCGCTTCGTCCA+TGG - chr5_4:5533384-5533403 Msa0832520:three_prime_UTR 70.0%
CTCCATGGACGAAGCGGGGC+CGG + chr5_4:5533389-5533408 None:intergenic 70.0%
CGGTTGCCGCCTTGGATCGC+TGG - chr5_4:5538584-5538603 Msa0832520:intron 70.0%
GGACGAAGCGGGGCCGGTAC+TGG + chr5_4:5533383-5533402 None:intergenic 75.0%
CGGCCCCGCTTCGTCCATGG+AGG - chr5_4:5533387-5533406 Msa0832520:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5533249 5538918 5533249 ID=Msa0832520;Name=Msa0832520
chr5_4 mRNA 5533249 5538918 5533249 ID=Msa0832520-mRNA-1;Parent=Msa0832520;Name=Msa0832520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=22|1|1|1|0.8|1|6|164|1000
chr5_4 exon 5533249 5533862 5533249 ID=Msa0832520-mRNA-1:exon:2400;Parent=Msa0832520-mRNA-1
chr5_4 exon 5534533 5535009 5534533 ID=Msa0832520-mRNA-1:exon:2399;Parent=Msa0832520-mRNA-1
chr5_4 exon 5535231 5535353 5535231 ID=Msa0832520-mRNA-1:exon:2398;Parent=Msa0832520-mRNA-1
chr5_4 exon 5535744 5535998 5535744 ID=Msa0832520-mRNA-1:exon:2397;Parent=Msa0832520-mRNA-1
chr5_4 exon 5536138 5537535 5536138 ID=Msa0832520-mRNA-1:exon:2396;Parent=Msa0832520-mRNA-1
chr5_4 exon 5538597 5538918 5538597 ID=Msa0832520-mRNA-1:exon:2395;Parent=Msa0832520-mRNA-1
chr5_4 five_prime_UTR 5538897 5538918 5538897 ID=Msa0832520-mRNA-1:five_prime_utr;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5538597 5538896 5538597 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5536138 5537535 5536138 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5535744 5535998 5535744 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5535231 5535353 5535231 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5534533 5535009 5534533 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 CDS 5533413 5533862 5533413 ID=Msa0832520-mRNA-1:cds;Parent=Msa0832520-mRNA-1
chr5_4 three_prime_UTR 5533249 5533412 5533249 ID=Msa0832520-mRNA-1:three_prime_utr;Parent=Msa0832520-mRNA-1
Gene Sequence

>Msa0832520

ATGGCGAAGCTATTATCCTTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTTTCAGCACGATCTCACTATCCTTCAATGCCTTCTTACCCCAAAGACGAGGCGGGGACCAGTACCGGCCCCGCTTCGTCCATGGAGGTTTCGAAAGTCACCGGACTTTTCTCTGTTCATGGAATGACTTGCTCCGCTTGCGCTGGATCCGTCGAGAAATCCATCAAACGGCTACATGGAATTCATGAAGCTGTTGTTGATGTACTTAATAACCGTACCCGCGTCATCTTTCACCCTTCTTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGACGCTGGATTTGACGCGGCATTATTAACAGATGTAATGAATGAGAACACTATTCAAGTATGCCGTATACAAATAAAAGGAATGACATGCACGTCGTGTTCCACCGCGGTTGAATCAGCTCTAAAAGCCCTTCCTGGAGTTGTTGGAGCCCAAGTAGCTTTAGCAACAGAAGAGGCTCAAGTTCATTACAATCCAAACATCATTACTCATAGCCAAATCTTGGAAGCTGTAGATGAAGCTGGATTTGAAGCAACACTCATTAGTTCAAGTGAAGACTTAAGCAAAATCGATCTCCATGTGGAAGGCGATCTCACCAATAATGCCATGATCAAACTCGTCGAAGATTCTCTTCGATCACTCCCTGGAGTTTTAGAATTACACACCAATCTCGAATTCAACAAAATTTCGCTTTCTTATAAAGCAGACATAACAGGGCCAAGGGATTTCATTAATGTGATTGTAGAAACTAGTAATGGAAATTTGAAGGCGAAAATATTTCCCAGTGAAGGTGGAAGAAGAGATACTCATAGAAAAAAGGAAATTAAAAGCTATTACAAATCTTTTTTATGGAGTTTGGTGTTTACTATTCCAGTTTTTCTAACTTCCATGGTGTTTATGTATATACCTGGAATAAAAAATTTATTGGATTCGAAAATCGTGAAGATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCGACACCAGTGCAGTTCATTTTCGGGTGGCGATTTTATATTGGTGCTTATAAATCATTGCGTCGTGGTTCTGCTAATATGGATGTGCTGATAGCACTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATTCTGTTTTGAGGGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTCTTTGAGACTAGTGCGATGCTTATTTCGTTTATTCTGTTAGGAAAGTATCTTGAGGTTTTAGCTAAGGGGAAAACATCGAATGCGATTGCGAAGCTAATGAATTTGACACCTGATACTGCTATATTGTTGAGTTTGGATGGCGAAGGGAATGTTGTTGGGGAGGAAGAAATTGATAGTAGGTTGGTTAAGAAGAATGATGTGATTAAGATTATTCCGGGTGCAAAAGTTGCTTCTGATGGGCTTGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCATGTCCTGTGTCTAAGAGGAAAGGTGATACTGTTATCGGTGGAACTTTGAATGAGAATGGTGTCTTGCATGTTAAGGCAACGAAGGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTAGACTTGTTGAGTCTGCTCAAATGGCTAAAGCTCCTGTCCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTTTGGTGATCTTGATCTCATTTTCAACTTGGCTTGCCTGGTTCTTAGCTGGAAAATATCATGCTTACCCGAAATCCTGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATTTCTGTCATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCTACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTATTGATCAAAGGAGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACCGGTACTCTTACTATTGGGAAGCCAGTGATAGTAAATACAAAACTATTGACAAAAATGGTACTCCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTGAACAGTGAACATCCACTAGCTAAGGCCGTTGTTGAGTATGCCAAAAAATTTAAAGATGAAGAGAACCCTTCTTGGCCAGAAGCCCGAGATTTTGTTTCCATTACTGGACATGGAGTAAAGGCCACCGTTCGTAACAAGCAAATAATGGTCGGTAATAAGGGCTTGATGGTTGAACATAATATTTCAATTCCTGCTGTTGCTGAAGATCTACTTGCTGAAGCCGAAAACATGGCTCAAACAGGAATTTTAGTATCTATAAATGGGGAAGTAGCTGGGGTTTTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTGATTTCCATTCTAAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGAGACAACTGGGGAACTGCTAATTCCATTGCAAGGGAAGTTGGAATTGACGATGTTATTGCTGAAGCCAAACCGGATCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACGGTGGCTATGGTCGGCGACGGTATCAATGATTCACCTGCACTTGTAGCAGCAGATGTGGGAATGGCAATAGGTGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTACTAATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCAAGAAAAACTTTATTTCGTATACGCCTCAATTATGTTTGGGCTTTGGGTTATAATTTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGGTTGCCGCCTTGGATCGCTGGAGCTGCTATGGCTGCCTCTTCTGTCAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGACCCAAGAAGCTGAACAGCCTTGACATAGGGGGCATATTGATCGAGACATCGAGTGATCCTTTGATCATACATGACGATTGA
Protein sequence

>Msa0832520

MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKDEAGTSTGPASSMEVSKVTGLFSVHGMTCSACAGSVEKSIKRLHGIHEAVVDVLNNRTRVIFHPSFVNEEAICEAIEDAGFDAALLTDVMNENTIQVCRIQIKGMTCTSCSTAVESALKALPGVVGAQVALATEEAQVHYNPNIITHSQILEAVDEAGFEATLISSSEDLSKIDLHVEGDLTNNAMIKLVEDSLRSLPGVLELHTNLEFNKISLSYKADITGPRDFINVIVETSNGNLKAKIFPSEGGRRDTHRKKEIKSYYKSFLWSLVFTIPVFLTSMVFMYIPGIKNLLDSKIVKMLTIGEVIRWVLATPVQFIFGWRFYIGAYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLSLDGEGNVVGEEEIDSRLVKKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEACPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNKQIMVGNKGLMVEHNISIPAVAEDLLAEAENMAQTGILVSINGEVAGVLAISDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIDDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTLFRIRLNYVWALGYNLLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGGILIETSSDPLIIHDD*