Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626700 | KEH28665.1 | 83.158 | 190 | 20 | 3 | 1 | 189 | 1 | 179 | 1.11e-100 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626700 | sp|Q9T072|BH025_ARATH | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.32e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626700 | A0A072US12 | 83.158 | 190 | 20 | 3 | 1 | 189 | 1 | 179 | 5.31e-101 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa0626700 | 0.800159 | 1.642557e-48 | -8.615850e-47 |
| Msa0040190 | Msa0626700 | 0.807496 | 4.913661e-50 | -8.615850e-47 |
| Msa0626700 | Msa0664790 | 0.866581 | 2.567251e-65 | -8.615850e-47 |
| Msa0626700 | Msa0820670 | 0.808979 | 2.372641e-50 | -8.615850e-47 |
| Msa0626700 | Msa0867990 | 0.864209 | 1.433746e-64 | -8.615850e-47 |
| Msa0626700 | Msa1008960 | 0.803543 | 3.315330e-49 | -8.615850e-47 |
| Msa0626700 | Msa1018720 | 0.825709 | 4.042761e-54 | -8.615850e-47 |
| Msa0626700 | Msa1024140 | 0.803302 | 3.718764e-49 | -8.615850e-47 |
| Msa0626700 | Msa1036350 | 0.847678 | 9.936387e-60 | -8.615850e-47 |
| Msa0626700 | Msa1076630 | 0.839544 | 1.487407e-57 | -8.615850e-47 |
| Msa0626700 | Msa1079610 | 0.801198 | 1.008301e-48 | -8.615850e-47 |
| Msa0626700 | Msa1108530 | 0.804806 | 1.810231e-49 | -8.615850e-47 |
| Msa0626700 | Msa1133660 | 0.808737 | 2.673183e-50 | -8.615850e-47 |
| Msa0626700 | Msa1147190 | 0.818652 | 1.753357e-52 | -8.615850e-47 |
| Msa0626700 | Msa1152280 | 0.801966 | 7.017212e-49 | -8.615850e-47 |
| Msa0626700 | Msa1157160 | 0.812041 | 5.175136e-51 | -8.615850e-47 |
| Msa0626700 | Msa1195860 | 0.817517 | 3.165561e-52 | -8.615850e-47 |
| Msa0626700 | Msa1211370 | 0.818235 | 2.178606e-52 | -8.615850e-47 |
| Msa0626700 | Msa1211880 | 0.807853 | 4.127220e-50 | -8.615850e-47 |
| Msa0626700 | Msa1221570 | -0.822137 | 2.781936e-53 | -8.615850e-47 |
| Msa0626700 | Msa1246420 | 0.802443 | 5.597608e-49 | -8.615850e-47 |
| Msa0626700 | Msa1248400 | 0.811513 | 6.744632e-51 | -8.615850e-47 |
| Msa0626700 | Msa1289340 | 0.803409 | 3.534197e-49 | -8.615850e-47 |
| Msa0626700 | Msa1327820 | 0.826536 | 2.571378e-54 | -8.615850e-47 |
| Msa0626700 | Msa1329820 | 0.805288 | 1.435339e-49 | -8.615850e-47 |
| Msa0626700 | Msa1355020 | 0.800508 | 1.394666e-48 | -8.615850e-47 |
| Msa0626700 | Msa1373910 | 0.830052 | 3.648904e-55 | -8.615850e-47 |
| Msa0626700 | Msa1413880 | 0.806312 | 8.745957e-50 | -8.615850e-47 |
| Msa0134550 | Msa0626700 | 0.800683 | 1.284679e-48 | -8.615850e-47 |
| Msa0201910 | Msa0626700 | 0.811194 | 7.908390e-51 | -8.615850e-47 |
| Msa0227290 | Msa0626700 | 0.800009 | 1.762263e-48 | -8.615850e-47 |
| Msa0240290 | Msa0626700 | 0.801168 | 1.022733e-48 | -8.615850e-47 |
| Msa0244370 | Msa0626700 | 0.803829 | 2.891469e-49 | -8.615850e-47 |
| Msa0268460 | Msa0626700 | 0.800172 | 1.632954e-48 | -8.615850e-47 |
| Msa0269100 | Msa0626700 | 0.808715 | 2.703125e-50 | -8.615850e-47 |
| Msa0288270 | Msa0626700 | 0.800906 | 1.156648e-48 | -8.615850e-47 |
| Msa0321200 | Msa0626700 | 0.800719 | 1.263028e-48 | -8.615850e-47 |
| Msa0331780 | Msa0626700 | 0.800944 | 1.136264e-48 | -8.615850e-47 |
| Msa0344070 | Msa0626700 | 0.804476 | 2.120808e-49 | -8.615850e-47 |
| Msa0586890 | Msa0626700 | 0.871370 | 7.194868e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626700 | MtrunA17_Chr4g0002851 | 82.353 | 187 | 21 | 3 | 1 | 186 | 1 | 176 | 5.96e-102 | 292 |
| Msa0626700 | MtrunA17_Chr7g0233441 | 80.214 | 187 | 25 | 3 | 1 | 186 | 1 | 176 | 3.50e-98 | 283 |
| Msa0626700 | MtrunA17_Chr4g0002831 | 70.256 | 195 | 50 | 5 | 1 | 192 | 1 | 190 | 2.81e-86 | 253 |
| Msa0626700 | MtrunA17_Chr2g0333621 | 45.517 | 145 | 62 | 4 | 57 | 186 | 149 | 291 | 4.64e-25 | 99.4 |
| Msa0626700 | MtrunA17_Chr4g0002801 | 35.052 | 194 | 93 | 5 | 12 | 186 | 131 | 310 | 1.52e-24 | 98.2 |
| Msa0626700 | MtrunA17_Chr4g0002781 | 35.912 | 181 | 86 | 5 | 22 | 186 | 163 | 329 | 1.11e-23 | 95.9 |
| Msa0626700 | MtrunA17_Chr5g0400621 | 40.299 | 134 | 69 | 1 | 70 | 192 | 182 | 315 | 1.76e-21 | 89.7 |
| Msa0626700 | MtrunA17_Chr2g0333611 | 39.189 | 148 | 78 | 5 | 50 | 186 | 49 | 195 | 3.10e-21 | 87.0 |
| Msa0626700 | MtrunA17_Chr5g0400641 | 38.686 | 137 | 73 | 2 | 70 | 195 | 23 | 159 | 7.42e-21 | 84.7 |
| Msa0626700 | MtrunA17_Chr5g0400661 | 39.286 | 140 | 61 | 4 | 71 | 186 | 175 | 314 | 1.01e-18 | 82.4 |
| Msa0626700 | MtrunA17_Chr8g0336681 | 36.184 | 152 | 70 | 4 | 58 | 186 | 168 | 315 | 3.91e-18 | 80.9 |
| Msa0626700 | MtrunA17_Chr2g0280161 | 36.923 | 130 | 70 | 2 | 71 | 188 | 203 | 332 | 7.93e-18 | 80.1 |
| Msa0626700 | MtrunA17_Chr2g0333641 | 39.437 | 142 | 72 | 3 | 57 | 186 | 148 | 287 | 3.32e-17 | 77.8 |
| Msa0626700 | MtrunA17_Chr7g0225901 | 36.090 | 133 | 62 | 4 | 71 | 186 | 114 | 240 | 4.49e-17 | 76.6 |
| Msa0626700 | MtrunA17_Chr4g0049331 | 33.588 | 131 | 76 | 2 | 70 | 189 | 160 | 290 | 4.87e-17 | 77.4 |
| Msa0626700 | MtrunA17_Chr4g0033391 | 32.215 | 149 | 80 | 3 | 53 | 186 | 154 | 296 | 2.31e-15 | 72.8 |
| Msa0626700 | MtrunA17_Chr5g0400671 | 35.714 | 126 | 73 | 2 | 70 | 187 | 179 | 304 | 2.58e-15 | 72.8 |
| Msa0626700 | MtrunA17_Chr4g0033291 | 32.886 | 149 | 79 | 3 | 53 | 186 | 162 | 304 | 1.60e-14 | 70.5 |
| Msa0626700 | MtrunA17_Chr2g0307141 | 32.836 | 134 | 67 | 3 | 70 | 186 | 208 | 335 | 1.73e-14 | 70.5 |
| Msa0626700 | MtrunA17_Chr2g0307131 | 33.835 | 133 | 65 | 3 | 71 | 186 | 205 | 331 | 2.87e-14 | 70.1 |
| Msa0626700 | MtrunA17_Chr6g0468461 | 34.711 | 121 | 70 | 2 | 70 | 187 | 198 | 312 | 4.71e-14 | 69.3 |
| Msa0626700 | MtrunA17_Chr6g0468491 | 35.338 | 133 | 63 | 4 | 71 | 186 | 163 | 289 | 7.99e-14 | 68.6 |
| Msa0626700 | MtrunA17_Chr7g0249811 | 38.060 | 134 | 80 | 2 | 56 | 186 | 175 | 308 | 9.82e-14 | 68.6 |
| Msa0626700 | MtrunA17_Chr2g0333541 | 36.184 | 152 | 81 | 5 | 50 | 186 | 98 | 248 | 1.65e-13 | 67.4 |
| Msa0626700 | MtrunA17_Chr4g0033281 | 52.542 | 59 | 28 | 0 | 128 | 186 | 243 | 301 | 2.86e-13 | 67.0 |
| Msa0626700 | MtrunA17_Chr4g0054621 | 33.884 | 121 | 74 | 3 | 71 | 186 | 198 | 317 | 4.91e-13 | 66.2 |
| Msa0626700 | MtrunA17_Chr4g0054561 | 34.921 | 126 | 73 | 3 | 70 | 186 | 180 | 305 | 2.58e-12 | 64.3 |
| Msa0626700 | MtrunA17_Chr4g0054581 | 30.822 | 146 | 70 | 5 | 70 | 192 | 223 | 360 | 8.97e-12 | 62.8 |
| Msa0626700 | MtrunA17_Chr4g0054551 | 34.127 | 126 | 74 | 3 | 70 | 186 | 180 | 305 | 2.00e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626700 | AT4G37850.2 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.34e-18 | 82.4 |
| Msa0626700 | AT4G37850.1 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.34e-18 | 82.4 |
| Msa0626700 | AT2G22760.2 | 36.232 | 138 | 74 | 3 | 70 | 193 | 144 | 281 | 7.79e-18 | 79.7 |
| Msa0626700 | AT2G22760.1 | 35.115 | 131 | 71 | 3 | 70 | 186 | 144 | 274 | 1.46e-16 | 76.3 |
| Msa0626700 | AT2G22770.1 | 32.911 | 158 | 79 | 3 | 56 | 186 | 142 | 299 | 2.28e-14 | 70.5 |
Find 47 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGTAGAGTCTTGAATTT+TGG | 0.151614 | 4_3:-6662826 | Msa0626700:CDS |
| TTGGGTTGTTATATAATATA+AGG | 0.212873 | 4_3:+6666334 | None:intergenic |
| TACATTACATATATAGTTCT+TGG | 0.239735 | 4_3:-6666267 | Msa0626700:five_prime_UTR |
| AGTTCTTGGAACAAAATTAA+TGG | 0.286364 | 4_3:-6666253 | Msa0626700:exon |
| TTGGCCTTCTAATTCTGATT+TGG | 0.292992 | 4_3:-6666214 | Msa0626700:intron |
| TTTACCAAATCAGAATTAGA+AGG | 0.359501 | 4_3:+6666210 | None:intergenic |
| TGGGTTGTTATATAATATAA+GGG | 0.393199 | 4_3:+6666335 | None:intergenic |
| TGGAGGAGTCGGGAGAAAAT+TGG | 0.405975 | 4_3:-6666233 | Msa0626700:CDS |
| AACACTCTTGCTTTGACCTC+TGG | 0.412988 | 4_3:+6662946 | None:intergenic |
| GGTTGTGAAGGTGAGTAATA+TGG | 0.419505 | 4_3:+6666418 | None:intergenic |
| ACGAACCTTCTTTAAGCCTA+TGG | 0.424699 | 4_3:+6665934 | None:intergenic |
| GGAGATCACAGAGATGTTGC+AGG | 0.441683 | 4_3:-6665969 | Msa0626700:CDS |
| GTCCAATGTGAGGAACAAAA+TGG | 0.442895 | 4_3:-6662901 | Msa0626700:CDS |
| AGATTCTCCATCTTTAAGAA+TGG | 0.468345 | 4_3:+6666078 | None:intergenic |
| GTGTGGATAAGAGGTGGGTT+GGG | 0.484793 | 4_3:+6666316 | None:intergenic |
| AGTGTGGATAAGAGGTGGGT+TGG | 0.494204 | 4_3:+6666315 | None:intergenic |
| AAACAAGAGAATGGTGGTTG+AGG | 0.500954 | 4_3:+6666397 | None:intergenic |
| TAAAGTACAGTGTGGATAAG+AGG | 0.503350 | 4_3:+6666307 | None:intergenic |
| GATGAAGCCATTCTTAAAGA+TGG | 0.508496 | 4_3:-6666085 | Msa0626700:CDS |
| AACAAAATTAATGGAGGAGT+CGG | 0.509366 | 4_3:-6666244 | Msa0626700:exon |
| AGTTCAAATTACTACAATTG+TGG | 0.519204 | 4_3:-6662988 | Msa0626700:CDS |
| CAGGAACTTTCAGACGCCAT+AGG | 0.519378 | 4_3:-6665950 | Msa0626700:CDS |
| AGACGCCATAGGCTTAAAGA+AGG | 0.520059 | 4_3:-6665939 | Msa0626700:intron |
| ATTGACTTGTATATGTACCT+TGG | 0.538882 | 4_3:+6662774 | None:intergenic |
| AGGGAGCTAGAACAAGAAGC+TGG | 0.569038 | 4_3:-6663042 | Msa0626700:CDS |
| ACAAAATTAATGGAGGAGTC+GGG | 0.571828 | 4_3:-6666243 | Msa0626700:exon |
| GATTCAACATTTGTAACGAA+AGG | 0.572379 | 4_3:-6663020 | Msa0626700:CDS |
| GTACAGTGTGGATAAGAGGT+GGG | 0.573739 | 4_3:+6666311 | None:intergenic |
| TGACATCACCATTGTTGCCA+AGG | 0.577300 | 4_3:-6662791 | Msa0626700:CDS |
| TACAAAGGAAAACAATGAGA+AGG | 0.583439 | 4_3:-6665990 | Msa0626700:CDS |
| AGTACAGTGTGGATAAGAGG+TGG | 0.587741 | 4_3:+6666310 | None:intergenic |
| GGGTTGTTATATAATATAAG+GGG | 0.588041 | 4_3:+6666336 | None:intergenic |
| TGGCAACAATGGTGATGTCA+AGG | 0.603091 | 4_3:+6662794 | None:intergenic |
| AACACTTCAAGAACGTGTGA+GGG | 0.609847 | 4_3:-6663061 | Msa0626700:CDS |
| CAACACTTCAAGAACGTGTG+AGG | 0.613481 | 4_3:-6663062 | Msa0626700:CDS |
| AATGGTGGTTGAGGTTGTGA+AGG | 0.616577 | 4_3:+6666406 | None:intergenic |
| TCTTGGAACAAAATTAATGG+AGG | 0.624977 | 4_3:-6666250 | Msa0626700:exon |
| GGTTGTTATATAATATAAGG+GGG | 0.626794 | 4_3:+6666337 | None:intergenic |
| TATATGTACCTTGGCAACAA+TGG | 0.630484 | 4_3:+6662783 | None:intergenic |
| AAGAATGATAAAGTACAGTG+TGG | 0.634617 | 4_3:+6666299 | None:intergenic |
| ATCTGTATGTGATGATGATG+AGG | 0.647394 | 4_3:-6666053 | Msa0626700:CDS |
| ATGAATTGAGTCGCTCACAC+AGG | 0.656277 | 4_3:-6666451 | Msa0626700:five_prime_UTR |
| GGCAACAATGGTGATGTCAA+GGG | 0.668997 | 4_3:+6662795 | None:intergenic |
| AAGTGATAATACTCTTCCAG+AGG | 0.687795 | 4_3:-6662962 | Msa0626700:CDS |
| AGATCCCACAGATAATACAA+AGG | 0.692675 | 4_3:-6666005 | Msa0626700:CDS |
| AACAATGGTGATGTCAAGGG+TGG | 0.697013 | 4_3:+6662798 | None:intergenic |
| ACTCGTCATAGTCCAATGTG+AGG | 0.715682 | 4_3:-6662911 | Msa0626700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTATAATTTAA+AGG | - | chr4_3:6665099-6665118 | Msa0626700:intron | 0.0% |
| !! | AATCATATGTATTATATAAT+AGG | + | chr4_3:6663026-6663045 | None:intergenic | 10.0% |
| !! | ATATTTATACTTTAAATGAA+TGG | - | chr4_3:6663310-6663329 | Msa0626700:intron | 10.0% |
| !!! | AATATTTTTTAGTATAAAGA+AGG | + | chr4_3:6663496-6663515 | None:intergenic | 10.0% |
| !!! | ATTTTTGTAAATGTTATTAA+TGG | + | chr4_3:6663875-6663894 | None:intergenic | 10.0% |
| !!! | TATTTTATATATCTTTCATA+TGG | - | chr4_3:6664450-6664469 | Msa0626700:intron | 10.0% |
| !!! | CTTCATATAATATATTTTTA+AGG | - | chr4_3:6666445-6666464 | Msa0626700:five_prime_UTR | 10.0% |
| !!! | AATATAAGGAACTTTATTTA+TGG | + | chr4_3:6663997-6664016 | None:intergenic | 15.0% |
| !!! | TTTTTGTACCAATTAATTTT+GGG | + | chr4_3:6665152-6665171 | None:intergenic | 15.0% |
| !! | TTATTTAGATTGAAAGAAAA+GGG | - | chr4_3:6665742-6665761 | Msa0626700:intron | 15.0% |
| !! | TATATGCACTTATAAATAAT+AGG | - | chr4_3:6666022-6666041 | Msa0626700:CDS | 15.0% |
| !! | ATATGCACTTATAAATAATA+GGG | - | chr4_3:6666023-6666042 | Msa0626700:CDS | 15.0% |
| !! | AGAAAAAAAAAACAAGAGAA+TGG | + | chr4_3:6662806-6662825 | None:intergenic | 20.0% |
| !! | TGGGTTGTTATATAATATAA+GGG | + | chr4_3:6662859-6662878 | None:intergenic | 20.0% |
| !!! | TTGGGTTGTTATATAATATA+AGG | + | chr4_3:6662860-6662879 | None:intergenic | 20.0% |
| !! | TACATTACATATATAGTTCT+TGG | - | chr4_3:6662924-6662943 | Msa0626700:CDS | 20.0% |
| !!! | TGTTTTTTGCATTTATTCAT+AGG | - | chr4_3:6663075-6663094 | Msa0626700:CDS | 20.0% |
| !!! | TTTTTTAGTATAAAGAAGGT+TGG | + | chr4_3:6663492-6663511 | None:intergenic | 20.0% |
| !! | TAGATTTCATATTTATCCAA+CGG | + | chr4_3:6663772-6663791 | None:intergenic | 20.0% |
| !! | TAAAAAACCATAAAGATCAT+CGG | - | chr4_3:6663960-6663979 | Msa0626700:intron | 20.0% |
| !!! | TTTTGCTTAAGAAAGTATTA+AGG | - | chr4_3:6664163-6664182 | Msa0626700:intron | 20.0% |
| !! | TTTAACTATCCACTAATTAA+TGG | + | chr4_3:6664267-6664286 | None:intergenic | 20.0% |
| !! | ATATCCATGGATAAAATAAA+CGG | + | chr4_3:6664294-6664313 | None:intergenic | 20.0% |
| !!! | CTTTTTGTACCAATTAATTT+TGG | + | chr4_3:6665153-6665172 | None:intergenic | 20.0% |
| !!! | GGTTTTATCATATTATTTGT+AGG | + | chr4_3:6665498-6665517 | None:intergenic | 20.0% |
| !! | TTTCTTTCAATCTAAATAAG+TGG | + | chr4_3:6665741-6665760 | None:intergenic | 20.0% |
| !! | CTTATTTAGATTGAAAGAAA+AGG | - | chr4_3:6665741-6665760 | Msa0626700:intron | 20.0% |
| !! | TATTTAGATTGAAAGAAAAG+GGG | - | chr4_3:6665743-6665762 | Msa0626700:intron | 20.0% |
| !!! | ACAATTTTCATATTGTACAA+CGG | - | chr4_3:6665932-6665951 | Msa0626700:intron | 20.0% |
| ! | AAAAAAAAACAAGAGAATGG+TGG | + | chr4_3:6662803-6662822 | None:intergenic | 25.0% |
| ! | GGTTGTTATATAATATAAGG+GGG | + | chr4_3:6662857-6662876 | None:intergenic | 25.0% |
| ! | GGGTTGTTATATAATATAAG+GGG | + | chr4_3:6662858-6662877 | None:intergenic | 25.0% |
| ! | AGTTCTTGGAACAAAATTAA+TGG | - | chr4_3:6662938-6662957 | Msa0626700:CDS | 25.0% |
| ! | TTTACCAAATCAGAATTAGA+AGG | + | chr4_3:6662984-6663003 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTATTATCTGT+GGG | + | chr4_3:6663193-6663212 | None:intergenic | 25.0% |
| !!! | TACCAGTTTTTTTTTGTTGA+AGG | - | chr4_3:6663355-6663374 | Msa0626700:intron | 25.0% |
| ! | TTCCTTCAACAAAAAAAAAC+TGG | + | chr4_3:6663360-6663379 | None:intergenic | 25.0% |
| ! | AGATTTCATATTTATCCAAC+GGG | + | chr4_3:6663771-6663790 | None:intergenic | 25.0% |
| ! | TAAATTCCTCGATTAAATAG+CGG | - | chr4_3:6664195-6664214 | Msa0626700:intron | 25.0% |
| !! | TATCCACTAATTAATGGATA+CGG | + | chr4_3:6664261-6664280 | None:intergenic | 25.0% |
| !!! | ATATCCGTTTATTTTATCCA+TGG | - | chr4_3:6664287-6664306 | Msa0626700:intron | 25.0% |
| ! | TAAAATCTTACTTAAGAGTG+TGG | - | chr4_3:6664474-6664493 | Msa0626700:intron | 25.0% |
| !! | TCTCTTTTCCCAAAATTAAT+TGG | - | chr4_3:6665141-6665160 | Msa0626700:intron | 25.0% |
| ! | CAATGAAAAGAAATCATTGT+CGG | - | chr4_3:6665210-6665229 | Msa0626700:intron | 25.0% |
| ! | AATGAAAAGAAATCATTGTC+GGG | - | chr4_3:6665211-6665230 | Msa0626700:intron | 25.0% |
| ! | ACAAATTCAACCAATGATTT+AGG | + | chr4_3:6665565-6665584 | None:intergenic | 25.0% |
| ! | GAAATCACAAAAAACACAAA+AGG | - | chr4_3:6665693-6665712 | Msa0626700:intron | 25.0% |
| ! | AAAAAAGCTTATAGAGAAGT+TGG | - | chr4_3:6665842-6665861 | Msa0626700:intron | 25.0% |
| ! | AGTTCAAATTACTACAATTG+TGG | - | chr4_3:6666203-6666222 | Msa0626700:intron | 25.0% |
| AAGAATGATAAAGTACAGTG+TGG | + | chr4_3:6662895-6662914 | None:intergenic | 30.0% | |
| TCTTGGAACAAAATTAATGG+AGG | - | chr4_3:6662941-6662960 | Msa0626700:CDS | 30.0% | |
| AACAAAATTAATGGAGGAGT+CGG | - | chr4_3:6662947-6662966 | Msa0626700:CDS | 30.0% | |
| ! | AGATTCTCCATCTTTAAGAA+TGG | + | chr4_3:6663116-6663135 | None:intergenic | 30.0% |
| !!! | GGATCATTATTTTGAAGATC+AGG | - | chr4_3:6663159-6663178 | Msa0626700:intron | 30.0% |
| !!! | CATTATTTTGAAGATCAGGT+TGG | - | chr4_3:6663163-6663182 | Msa0626700:intron | 30.0% |
| ! | GTTTTCCTTTGTATTATCTG+TGG | + | chr4_3:6663194-6663213 | None:intergenic | 30.0% |
| TACAAAGGAAAACAATGAGA+AGG | - | chr4_3:6663201-6663220 | Msa0626700:intron | 30.0% | |
| GATTTCATATTTATCCAACG+GGG | + | chr4_3:6663770-6663789 | None:intergenic | 30.0% | |
| !! | TTTTTAGCCGATGATCTTTA+TGG | + | chr4_3:6663970-6663989 | None:intergenic | 30.0% |
| ! | AACATAGCTTTTTGCTTCAA+CGG | - | chr4_3:6664079-6664098 | Msa0626700:intron | 30.0% |
| TGTTATTACGCTCCTTTAAA+AGG | + | chr4_3:6664123-6664142 | None:intergenic | 30.0% | |
| AAATTCCTCGATTAAATAGC+GGG | - | chr4_3:6664196-6664215 | Msa0626700:intron | 30.0% | |
| ! | ATTTTATCCGCGAATATTCA+CGG | - | chr4_3:6664346-6664365 | Msa0626700:intron | 30.0% |
| ! | TTTTTGTCATCCCTAATTGA+AGG | - | chr4_3:6664378-6664397 | Msa0626700:intron | 30.0% |
| AAAGTCGATACCTTCAATTA+GGG | + | chr4_3:6664391-6664410 | None:intergenic | 30.0% | |
| AAAAGTCGATACCTTCAATT+AGG | + | chr4_3:6664392-6664411 | None:intergenic | 30.0% | |
| ! | TAAGAGTGTGGTTTAAACAA+AGG | - | chr4_3:6664486-6664505 | Msa0626700:intron | 30.0% |
| TGATACCATCTTAAAAATCG+TGG | + | chr4_3:6664634-6664653 | None:intergenic | 30.0% | |
| !!! | TTTTAAGATGGTATCAGAGT+TGG | - | chr4_3:6664638-6664657 | Msa0626700:intron | 30.0% |
| ! | TTTAAGATGGTATCAGAGTT+GGG | - | chr4_3:6664639-6664658 | Msa0626700:intron | 30.0% |
| AAAGCTAGCTCAAATGATAA+AGG | + | chr4_3:6664796-6664815 | None:intergenic | 30.0% | |
| !!! | TTATCATTTGAGCTAGCTTT+TGG | - | chr4_3:6664796-6664815 | Msa0626700:intron | 30.0% |
| AGATCCAAACCTATTTAAGA+TGG | - | chr4_3:6664822-6664841 | Msa0626700:intron | 30.0% | |
| GATACCATCTTAAATAGGTT+TGG | + | chr4_3:6664829-6664848 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+AGG | - | chr4_3:6664560-6664579 | Msa0626700:intron | 30.0% | |
| GACAATGTGTTTATAAGTGA+GGG | - | chr4_3:6664561-6664580 | Msa0626700:intron | 30.0% | |
| TTTCACAAAAGCAATTTCTG+AGG | + | chr4_3:6665027-6665046 | None:intergenic | 30.0% | |
| ! | ATTGACTTTCTTAGAAATCG+TGG | + | chr4_3:6665065-6665084 | None:intergenic | 30.0% |
| ! | CGACAATGATTTCTTTTCAT+TGG | + | chr4_3:6665212-6665231 | None:intergenic | 30.0% |
| ATGAAAAGAAATCATTGTCG+GGG | - | chr4_3:6665212-6665231 | Msa0626700:intron | 30.0% | |
| ! | AATGCAAATGCCTTTAGAAA+GGG | + | chr4_3:6665267-6665286 | None:intergenic | 30.0% |
| ! | TAATGCAAATGCCTTTAGAA+AGG | + | chr4_3:6665268-6665287 | None:intergenic | 30.0% |
| AACATCGCTAAAAACGTAAA+AGG | - | chr4_3:6665417-6665436 | Msa0626700:intron | 30.0% | |
| TCCAAGTTAATAGCATACAA+CGG | - | chr4_3:6665465-6665484 | Msa0626700:intron | 30.0% | |
| TGAAAGAAAAGGGGAAAAAA+AGG | - | chr4_3:6665752-6665771 | Msa0626700:intron | 30.0% | |
| ATATTGTACAACGGATAAGT+TGG | - | chr4_3:6665941-6665960 | Msa0626700:CDS | 30.0% | |
| TCTCTATATAAATGTGTAGC+TGG | - | chr4_3:6666067-6666086 | Msa0626700:CDS | 30.0% | |
| GATTCAACATTTGTAACGAA+AGG | - | chr4_3:6666171-6666190 | Msa0626700:intron | 30.0% | |
| !! | AAGATGAAGATTTTCAAGGT+TGG | + | chr4_3:6666336-6666355 | None:intergenic | 30.0% |
| ! | CTGAAAGATGAAGATTTTCA+AGG | + | chr4_3:6666340-6666359 | None:intergenic | 30.0% |
| ! | AACAGTAGAGTCTTGAATTT+TGG | - | chr4_3:6666365-6666384 | Msa0626700:five_prime_UTR | 30.0% |
| !! | ATTGACTTGTATATGTACCT+TGG | + | chr4_3:6666420-6666439 | None:intergenic | 30.0% |
| TAAAGTACAGTGTGGATAAG+AGG | + | chr4_3:6662887-6662906 | None:intergenic | 35.0% | |
| ACAAAATTAATGGAGGAGTC+GGG | - | chr4_3:6662948-6662967 | Msa0626700:CDS | 35.0% | |
| ! | TTGGCCTTCTAATTCTGATT+TGG | - | chr4_3:6662977-6662996 | Msa0626700:CDS | 35.0% |
| AATAGGTACGTGATTGCAAT+TGG | + | chr4_3:6663009-6663028 | None:intergenic | 35.0% | |
| GATGAAGCCATTCTTAAAGA+TGG | - | chr4_3:6663106-6663125 | Msa0626700:CDS | 35.0% | |
| ! | ATCTGTATGTGATGATGATG+AGG | - | chr4_3:6663138-6663157 | Msa0626700:intron | 35.0% |
| AGATCCCACAGATAATACAA+AGG | - | chr4_3:6663186-6663205 | Msa0626700:intron | 35.0% | |
| TCGAAGTGACTTAAGATTGA+AGG | - | chr4_3:6663692-6663711 | Msa0626700:intron | 35.0% | |
| AGTGACTTAAGATTGAAGGT+AGG | - | chr4_3:6663696-6663715 | Msa0626700:intron | 35.0% | |
| GTGACTTAAGATTGAAGGTA+GGG | - | chr4_3:6663697-6663716 | Msa0626700:intron | 35.0% | |
| ATTGAAGGTAGGGATGTAAA+TGG | - | chr4_3:6663707-6663726 | Msa0626700:intron | 35.0% | |
| TAAATGGATATCCATGGATG+TGG | - | chr4_3:6663723-6663742 | Msa0626700:intron | 35.0% | |
| TATCTGCACGAATATGGATA+AGG | + | chr4_3:6663797-6663816 | None:intergenic | 35.0% | |
| ! | CCTTTAAAAGGAAGTGAAAG+TGG | + | chr4_3:6664111-6664130 | None:intergenic | 35.0% |
| ! | CCACTTTCACTTCCTTTTAA+AGG | - | chr4_3:6664108-6664127 | Msa0626700:intron | 35.0% |
| CATCCGTATCCATTAATTAG+TGG | - | chr4_3:6664255-6664274 | Msa0626700:intron | 35.0% | |
| TTATCCATGGATATCCATTC+AGG | - | chr4_3:6664300-6664319 | Msa0626700:intron | 35.0% | |
| GTCATACATCTGATAGAAGA+TGG | - | chr4_3:6664535-6664554 | Msa0626700:intron | 35.0% | |
| !! | ACCTTAAAAACCGGTTTTGT+GGG | - | chr4_3:6664592-6664611 | Msa0626700:intron | 35.0% |
| !! | TCCAACCACGATTTTTAAGA+TGG | - | chr4_3:6664626-6664645 | Msa0626700:intron | 35.0% |
| ACCATCTTAAAAATCGTGGT+TGG | + | chr4_3:6664630-6664649 | None:intergenic | 35.0% | |
| TATTTATATGCTCAACAGCC+CGG | + | chr4_3:6664763-6664782 | None:intergenic | 35.0% | |
| GCTCTGATACCATCTTAAAT+AGG | + | chr4_3:6664834-6664853 | None:intergenic | 35.0% | |
| !! | GTTTGGTTTGTGGACATAAA+TGG | + | chr4_3:6664912-6664931 | None:intergenic | 35.0% |
| ! | TGCTTTTGTGAAATTGTGCT+AGG | - | chr4_3:6665034-6665053 | Msa0626700:intron | 35.0% |
| TGTAGCTTAAGCAAAGTGAA+AGG | - | chr4_3:6665175-6665194 | Msa0626700:intron | 35.0% | |
| TGAAAAGAAATCATTGTCGG+GGG | - | chr4_3:6665213-6665232 | Msa0626700:intron | 35.0% | |
| ! | ATGCAAATGCCTTTAGAAAG+GGG | + | chr4_3:6665266-6665285 | None:intergenic | 35.0% |
| ACCGTTGTATGCTATTAACT+TGG | + | chr4_3:6665469-6665488 | None:intergenic | 35.0% | |
| ACTGATGTCGATCTTTCAAT+AGG | - | chr4_3:6665590-6665609 | Msa0626700:intron | 35.0% | |
| ! | GGATGTAGATGAGTGATTTT+AGG | - | chr4_3:6665773-6665792 | Msa0626700:intron | 35.0% |
| AAGTGATAATACTCTTCCAG+AGG | - | chr4_3:6666229-6666248 | Msa0626700:CDS | 35.0% | |
| ! | TACCATTTTGTTCCTCACAT+TGG | + | chr4_3:6666295-6666314 | None:intergenic | 35.0% |
| TATATGTACCTTGGCAACAA+TGG | + | chr4_3:6666411-6666430 | None:intergenic | 35.0% | |
| GGTTGTGAAGGTGAGTAATA+TGG | + | chr4_3:6662776-6662795 | None:intergenic | 40.0% | |
| AAACAAGAGAATGGTGGTTG+AGG | + | chr4_3:6662797-6662816 | None:intergenic | 40.0% | |
| ACGAACCTTCTTTAAGCCTA+TGG | + | chr4_3:6663260-6663279 | None:intergenic | 40.0% | |
| AAAGCCATATATCCTCGCAT+GGG | + | chr4_3:6663633-6663652 | None:intergenic | 40.0% | |
| GGGATGTAAATGGATATCCA+TGG | - | chr4_3:6663717-6663736 | Msa0626700:intron | 40.0% | |
| AATCACACTATCCACATCCA+TGG | + | chr4_3:6663737-6663756 | None:intergenic | 40.0% | |
| AACGGATATCTGCACGAATA+TGG | + | chr4_3:6663803-6663822 | None:intergenic | 40.0% | |
| ! | TCCATGGATTACCCACTAAA+CGG | + | chr4_3:6663821-6663840 | None:intergenic | 40.0% |
| ! | TGGGTAATCCATGGATTTTG+CGG | - | chr4_3:6663826-6663845 | Msa0626700:intron | 40.0% |
| ! | CATGGATTTTGCGGTATCAA+CGG | - | chr4_3:6663835-6663854 | Msa0626700:intron | 40.0% |
| ! | ATGGATTTTGCGGTATCAAC+GGG | - | chr4_3:6663836-6663855 | Msa0626700:intron | 40.0% |
| AAAAGGAAGTGAAAGTGGTC+AGG | + | chr4_3:6664106-6664125 | None:intergenic | 40.0% | |
| TAACAACACTCACAGTACTG+AGG | - | chr4_3:6664138-6664157 | Msa0626700:intron | 40.0% | |
| GATAAAATCCACCACGGATA+CGG | + | chr4_3:6664334-6664353 | None:intergenic | 40.0% | |
| TTTGCATCCGTGAATATTCG+CGG | + | chr4_3:6664356-6664375 | None:intergenic | 40.0% | |
| GCAATCCTCACCTTAAAAAC+CGG | - | chr4_3:6664583-6664602 | Msa0626700:intron | 40.0% | |
| !!! | CAAAACCGGTTTTTAAGGTG+AGG | + | chr4_3:6664591-6664610 | None:intergenic | 40.0% |
| !! | CACCTTAAAAACCGGTTTTG+TGG | - | chr4_3:6664591-6664610 | Msa0626700:intron | 40.0% |
| !! | TCCCACAAAACCGGTTTTTA+AGG | + | chr4_3:6664596-6664615 | None:intergenic | 40.0% |
| CTAACACAATCCCACAAAAC+CGG | + | chr4_3:6664605-6664624 | None:intergenic | 40.0% | |
| ATGGTATCAGAGTTGGGTTA+AGG | - | chr4_3:6664645-6664664 | Msa0626700:intron | 40.0% | |
| TTCTATCAGGCATCCACTAT+CGG | - | chr4_3:6664878-6664897 | Msa0626700:intron | 40.0% | |
| GGTTTGTGGACATAAATGGT+GGG | + | chr4_3:6664908-6664927 | None:intergenic | 40.0% | |
| ! | TGGTTTGTGGACATAAATGG+TGG | + | chr4_3:6664909-6664928 | None:intergenic | 40.0% |
| GTGAGTTAAGAGTCCTACAT+CGG | - | chr4_3:6664955-6664974 | Msa0626700:intron | 40.0% | |
| !! | CAAAAGCAATTTCTGAGGTG+AGG | + | chr4_3:6665022-6665041 | None:intergenic | 40.0% |
| GAAAAGAAATCATTGTCGGG+GGG | - | chr4_3:6665214-6665233 | Msa0626700:intron | 40.0% | |
| GGATCTTTACCCCTTTCTAA+AGG | - | chr4_3:6665254-6665273 | Msa0626700:intron | 40.0% | |
| AACGTTGACGCCTAAATCAT+TGG | - | chr4_3:6665552-6665571 | Msa0626700:intron | 40.0% | |
| CTTGAATTCACATCTTGTCG+CGG | + | chr4_3:6665629-6665648 | None:intergenic | 40.0% | |
| ! | TTTTTCTCCTTCGTTCATCG+AGG | + | chr4_3:6665826-6665845 | None:intergenic | 40.0% |
| AACACTTCAAGAACGTGTGA+GGG | - | chr4_3:6666130-6666149 | Msa0626700:intron | 40.0% | |
| GTCCAATGTGAGGAACAAAA+TGG | - | chr4_3:6666290-6666309 | Msa0626700:five_prime_UTR | 40.0% | |
| !! | GGTTGGTTAGTATTTTGAGC+AGG | + | chr4_3:6666319-6666338 | None:intergenic | 40.0% |
| AATGGTGGTTGAGGTTGTGA+AGG | + | chr4_3:6662788-6662807 | None:intergenic | 45.0% | |
| GTACAGTGTGGATAAGAGGT+GGG | + | chr4_3:6662883-6662902 | None:intergenic | 45.0% | |
| AGTACAGTGTGGATAAGAGG+TGG | + | chr4_3:6662884-6662903 | None:intergenic | 45.0% | |
| AGACGCCATAGGCTTAAAGA+AGG | - | chr4_3:6663252-6663271 | Msa0626700:intron | 45.0% | |
| GATAATAGATACCCCATGCG+AGG | - | chr4_3:6663618-6663637 | Msa0626700:intron | 45.0% | |
| ATACCCCATGCGAGGATATA+TGG | - | chr4_3:6663626-6663645 | Msa0626700:intron | 45.0% | |
| AAGCCATATATCCTCGCATG+GGG | + | chr4_3:6663632-6663651 | None:intergenic | 45.0% | |
| GAAAGCCATATATCCTCGCA+TGG | + | chr4_3:6663634-6663653 | None:intergenic | 45.0% | |
| TCGTGCAGATATCCGTTTAG+TGG | - | chr4_3:6663806-6663825 | Msa0626700:intron | 45.0% | |
| CGTGCAGATATCCGTTTAGT+GGG | - | chr4_3:6663807-6663826 | Msa0626700:intron | 45.0% | |
| ! | TCCGTTTAGTGGGTAATCCA+TGG | - | chr4_3:6663817-6663836 | Msa0626700:intron | 45.0% |
| CGTTGATACCGCAAAATCCA+TGG | + | chr4_3:6663837-6663856 | None:intergenic | 45.0% | |
| CCATACCCGCTATTTAATCG+AGG | + | chr4_3:6664204-6664223 | None:intergenic | 45.0% | |
| !! | CCTCGATTAAATAGCGGGTA+TGG | - | chr4_3:6664201-6664220 | Msa0626700:intron | 45.0% |
| GGATACGGATGCAGACTTAA+TGG | + | chr4_3:6664246-6664265 | None:intergenic | 45.0% | |
| GAGACCTGAATGGATATCCA+TGG | + | chr4_3:6664307-6664326 | None:intergenic | 45.0% | |
| TTCGCGGATAAAATCCACCA+CGG | + | chr4_3:6664340-6664359 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTGGGATTGTGTT+AGG | - | chr4_3:6664603-6664622 | Msa0626700:intron | 45.0% |
| TTGGGTTAAGGTTTGCGTTG+TGG | - | chr4_3:6664657-6664676 | Msa0626700:intron | 45.0% | |
| TGGGTTAAGGTTTGCGTTGT+GGG | - | chr4_3:6664658-6664677 | Msa0626700:intron | 45.0% | |
| TTGTTTGTCTCACATCCCAC+AGG | - | chr4_3:6664734-6664753 | Msa0626700:intron | 45.0% | |
| AGAGCCTCTTCTAGATCCAT+TGG | - | chr4_3:6664849-6664868 | Msa0626700:intron | 45.0% | |
| TGGTCCAATGGATCTAGAAG+AGG | + | chr4_3:6664856-6664875 | None:intergenic | 45.0% | |
| !! | GATAGTGGATGCCTGATAGA+AGG | + | chr4_3:6664879-6664898 | None:intergenic | 45.0% |
| TCTATCAGGCATCCACTATC+GGG | - | chr4_3:6664879-6664898 | Msa0626700:intron | 45.0% | |
| ! | TTGTGGACATAAATGGTGGG+CGG | + | chr4_3:6664905-6664924 | None:intergenic | 45.0% |
| !! | GCACTATTGGGTTTGGTTTG+TGG | + | chr4_3:6664922-6664941 | None:intergenic | 45.0% |
| CAAACCAAACCCAATAGTGC+TGG | - | chr4_3:6664922-6664941 | Msa0626700:intron | 45.0% | |
| GTCCTACATCGGATAGATCA+TGG | - | chr4_3:6664966-6664985 | Msa0626700:intron | 45.0% | |
| GACCATGATCTATCCGATGT+AGG | + | chr4_3:6664971-6664990 | None:intergenic | 45.0% | |
| GGGGTCAGTTATAAATGGAG+AGG | - | chr4_3:6665233-6665252 | Msa0626700:intron | 45.0% | |
| ATCTGTGAGCGTGGGTATTT+CGG | + | chr4_3:6665528-6665547 | None:intergenic | 45.0% | |
| GTGTAGTTAGTCGTCTTGTG+CGG | + | chr4_3:6665654-6665673 | None:intergenic | 45.0% | |
| GTGATTTCGTCGTCTAAGTG+CGG | + | chr4_3:6665681-6665700 | None:intergenic | 45.0% | |
| CAACACTTCAAGAACGTGTG+AGG | - | chr4_3:6666129-6666148 | Msa0626700:intron | 45.0% | |
| AACACTCTTGCTTTGACCTC+TGG | + | chr4_3:6666248-6666267 | None:intergenic | 45.0% | |
| ACTCGTCATAGTCCAATGTG+AGG | - | chr4_3:6666280-6666299 | Msa0626700:five_prime_UTR | 45.0% | |
| ! | AACAATGGTGATGTCAAGGG+TGG | + | chr4_3:6666396-6666415 | None:intergenic | 45.0% |
| ! | GGCAACAATGGTGATGTCAA+GGG | + | chr4_3:6666399-6666418 | None:intergenic | 45.0% |
| ! | TGGCAACAATGGTGATGTCA+AGG | + | chr4_3:6666400-6666419 | None:intergenic | 45.0% |
| TGACATCACCATTGTTGCCA+AGG | - | chr4_3:6666400-6666419 | Msa0626700:five_prime_UTR | 45.0% | |
| !!! | TATTATTTTTTAAATAAAGT+AGG | - | chr4_3:6663567-6663586 | Msa0626700:intron | 5.0% |
| !!! | ATTATTTTTTAAATAAAGTA+GGG | - | chr4_3:6663568-6663587 | Msa0626700:intron | 5.0% |
| !!! | CTTTATTTTTATTAAATATA+AGG | + | chr4_3:6664011-6664030 | None:intergenic | 5.0% |
| !!! | TTCATATAATATATTTTTAA+GGG | - | chr4_3:6666446-6666465 | Msa0626700:five_prime_UTR | 5.0% |
| ! | GTGTGGATAAGAGGTGGGTT+GGG | + | chr4_3:6662878-6662897 | None:intergenic | 50.0% |
| AGTGTGGATAAGAGGTGGGT+TGG | + | chr4_3:6662879-6662898 | None:intergenic | 50.0% | |
| TGGAGGAGTCGGGAGAAAAT+TGG | - | chr4_3:6662958-6662977 | Msa0626700:CDS | 50.0% | |
| GGAGATCACAGAGATGTTGC+AGG | - | chr4_3:6663222-6663241 | Msa0626700:intron | 50.0% | |
| CAGGAACTTTCAGACGCCAT+AGG | - | chr4_3:6663241-6663260 | Msa0626700:intron | 50.0% | |
| ! | TAGCGGGTATGGATATCAGC+AGG | - | chr4_3:6664212-6664231 | Msa0626700:intron | 50.0% |
| GGGTTAAGGTTTGCGTTGTG+GGG | - | chr4_3:6664659-6664678 | Msa0626700:intron | 50.0% | |
| TCTCACATCCCACAGGTTTC+CGG | - | chr4_3:6664741-6664760 | Msa0626700:intron | 50.0% | |
| CCTGATAGAAGGTGGTCCAA+TGG | + | chr4_3:6664868-6664887 | None:intergenic | 50.0% | |
| CCATTGGACCACCTTCTATC+AGG | - | chr4_3:6664865-6664884 | Msa0626700:intron | 50.0% | |
| AGTGGATGCCTGATAGAAGG+TGG | + | chr4_3:6664876-6664895 | None:intergenic | 50.0% | |
| ACGACCAGCACTATTGGGTT+TGG | + | chr4_3:6664929-6664948 | None:intergenic | 50.0% | |
| CCTTCACGACCAGCACTATT+GGG | + | chr4_3:6664934-6664953 | None:intergenic | 50.0% | |
| !! | CCAATAGTGCTGGTCGTGAA+GGG | - | chr4_3:6664932-6664951 | Msa0626700:intron | 50.0% |
| !! | CAATAGTGCTGGTCGTGAAG+GGG | - | chr4_3:6664933-6664952 | Msa0626700:intron | 50.0% |
| GTCGGGGGGTCAGTTATAAA+TGG | - | chr4_3:6665228-6665247 | Msa0626700:intron | 50.0% | |
| CGTGGGTATTTCGGTGACTT+AGG | + | chr4_3:6665519-6665538 | None:intergenic | 50.0% | |
| ! | CATCGAGGAGGGGTAGTTTT+AGG | + | chr4_3:6665811-6665830 | None:intergenic | 50.0% |
| TCTCCTTCGTTCATCGAGGA+GGG | + | chr4_3:6665822-6665841 | None:intergenic | 50.0% | |
| TTCTCCTTCGTTCATCGAGG+AGG | + | chr4_3:6665823-6665842 | None:intergenic | 50.0% | |
| AGGGAGCTAGAACAAGAAGC+TGG | - | chr4_3:6666149-6666168 | Msa0626700:intron | 50.0% | |
| ! | GATTTTCGTGTCTGCCCCGT+TGG | - | chr4_3:6663753-6663772 | Msa0626700:intron | 55.0% |
| ATACGGAGCGGAGACCTGAA+TGG | + | chr4_3:6664317-6664336 | None:intergenic | 55.0% | |
| AATCCACCACGGATACGGAG+CGG | + | chr4_3:6664329-6664348 | None:intergenic | 55.0% | |
| CTCACATCCCACAGGTTTCC+GGG | - | chr4_3:6664742-6664761 | Msa0626700:intron | 55.0% | |
| TCAACAGCCCGGAAACCTGT+GGG | + | chr4_3:6664752-6664771 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+AGG | - | chr4_3:6664931-6664950 | Msa0626700:intron | 55.0% |
| CCCTTCACGACCAGCACTAT+TGG | + | chr4_3:6664935-6664954 | None:intergenic | 55.0% | |
| CGTTGCAGATCTGTGAGCGT+GGG | + | chr4_3:6665536-6665555 | None:intergenic | 55.0% | |
| ACGTTGCAGATCTGTGAGCG+TGG | + | chr4_3:6665537-6665556 | None:intergenic | 55.0% | |
| TACCCCTCCTCGATGAACGA+AGG | - | chr4_3:6665816-6665835 | Msa0626700:intron | 55.0% | |
| CTCCTTCGTTCATCGAGGAG+GGG | + | chr4_3:6665821-6665840 | None:intergenic | 55.0% | |
| GGTTTGCGTTGTGGGGACTC+AGG | - | chr4_3:6664666-6664685 | Msa0626700:intron | 60.0% | |
| CTCAACAGCCCGGAAACCTG+TGG | + | chr4_3:6664753-6664772 | None:intergenic | 60.0% | |
| AGGTCTCCGCTCCGTATCCG+TGG | - | chr4_3:6664320-6664339 | Msa0626700:intron | 65.0% | |
| TCTCCGCTCCGTATCCGTGG+TGG | - | chr4_3:6664323-6664342 | Msa0626700:intron | 65.0% | |
| TCAGGCCCACGCTAGGCATG+AGG | - | chr4_3:6664684-6664703 | Msa0626700:intron | 65.0% | |
| CAGGCCCACGCTAGGCATGA+GGG | - | chr4_3:6664685-6664704 | Msa0626700:intron | 65.0% | |
| CCCACCCTCATGCCTAGCGT+GGG | + | chr4_3:6664692-6664711 | None:intergenic | 65.0% | |
| CCCACGCTAGGCATGAGGGT+GGG | - | chr4_3:6664689-6664708 | Msa0626700:intron | 65.0% | |
| ACCCACCCTCATGCCTAGCG+TGG | + | chr4_3:6664693-6664712 | None:intergenic | 65.0% | |
| !! | AATGGTGGGCGGCCCGATAG+TGG | + | chr4_3:6664894-6664913 | None:intergenic | 65.0% |
| TGGGGACTCAGGCCCACGCT+AGG | - | chr4_3:6664677-6664696 | Msa0626700:intron | 70.0% | |
| GCCCACGCTAGGCATGAGGG+TGG | - | chr4_3:6664688-6664707 | Msa0626700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 6662742 | 6666471 | 6662742 | ID=Msa0626700;Name=Msa0626700 |
| chr4_3 | mRNA | 6662742 | 6666471 | 6662742 | ID=Msa0626700-mRNA-1;Parent=Msa0626700;Name=Msa0626700-mRNA-1;_AED=0.18;_eAED=0.18;_QI=215|1|1|1|1|1|3|17|195 |
| chr4_3 | exon | 6662742 | 6663127 | 6662742 | ID=Msa0626700-mRNA-1:exon:1884;Parent=Msa0626700-mRNA-1 |
| chr4_3 | exon | 6665940 | 6666116 | 6665940 | ID=Msa0626700-mRNA-1:exon:1883;Parent=Msa0626700-mRNA-1 |
| chr4_3 | exon | 6666215 | 6666471 | 6666215 | ID=Msa0626700-mRNA-1:exon:1882;Parent=Msa0626700-mRNA-1 |
| chr4_3 | five_prime_UTR | 6666257 | 6666471 | 6666257 | ID=Msa0626700-mRNA-1:five_prime_utr;Parent=Msa0626700-mRNA-1 |
| chr4_3 | CDS | 6666215 | 6666256 | 6666215 | ID=Msa0626700-mRNA-1:cds;Parent=Msa0626700-mRNA-1 |
| chr4_3 | CDS | 6665940 | 6666116 | 6665940 | ID=Msa0626700-mRNA-1:cds;Parent=Msa0626700-mRNA-1 |
| chr4_3 | CDS | 6662759 | 6663127 | 6662759 | ID=Msa0626700-mRNA-1:cds;Parent=Msa0626700-mRNA-1 |
| chr4_3 | three_prime_UTR | 6662742 | 6662758 | 6662742 | ID=Msa0626700-mRNA-1:three_prime_utr;Parent=Msa0626700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
