Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664790 | KEH28665.1 | 84.211 | 190 | 18 | 3 | 1 | 189 | 1 | 179 | 1.43e-102 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664790 | sp|Q9T072|BH025_ARATH | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.08e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664790 | A0A072US12 | 84.211 | 190 | 18 | 3 | 1 | 189 | 1 | 179 | 6.85e-103 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028410 | Msa0664790 | 0.801448 | 8.960364e-49 | -8.615850e-47 |
| Msa0050360 | Msa0664790 | 0.823996 | 1.024977e-53 | -8.615850e-47 |
| Msa0050400 | Msa0664790 | 0.826107 | 3.251810e-54 | -8.615850e-47 |
| Msa0092750 | Msa0664790 | 0.821993 | 3.005034e-53 | -8.615850e-47 |
| Msa0094420 | Msa0664790 | 0.805712 | 1.169556e-49 | -8.615850e-47 |
| Msa0626700 | Msa0664790 | 0.866581 | 2.567251e-65 | -8.615850e-47 |
| Msa0631340 | Msa0664790 | 0.802939 | 4.422750e-49 | -8.615850e-47 |
| Msa0664790 | Msa0669710 | 0.808197 | 3.486859e-50 | -8.615850e-47 |
| Msa0664790 | Msa0669750 | 0.811264 | 7.635285e-51 | -8.615850e-47 |
| Msa0664790 | Msa0679270 | 0.803274 | 3.769241e-49 | -8.615850e-47 |
| Msa0664790 | Msa0698860 | 0.803721 | 3.045595e-49 | -8.615850e-47 |
| Msa0664790 | Msa0698880 | 0.822317 | 2.526778e-53 | -8.615850e-47 |
| Msa0664790 | Msa0743630 | 0.807515 | 4.868132e-50 | -8.615850e-47 |
| Msa0664790 | Msa0766880 | 0.807105 | 5.946696e-50 | -8.615850e-47 |
| Msa0664790 | Msa0771940 | 0.803337 | 3.657320e-49 | -8.615850e-47 |
| Msa0664790 | Msa0793060 | 0.820176 | 7.877160e-53 | -8.615850e-47 |
| Msa0664790 | Msa0804930 | 0.816158 | 6.388569e-52 | -8.615850e-47 |
| Msa0664790 | Msa0863780 | 0.803016 | 4.263163e-49 | -8.615850e-47 |
| Msa0664790 | Msa0867990 | 0.988331 | 1.338340e-173 | -8.615850e-47 |
| Msa0664790 | Msa0872110 | 0.800724 | 1.260079e-48 | -8.615850e-47 |
| Msa0664790 | Msa0931280 | 0.806681 | 7.309648e-50 | -8.615850e-47 |
| Msa0664790 | Msa0967450 | 0.802445 | 5.591944e-49 | -8.615850e-47 |
| Msa0664790 | Msa0983030 | 0.800739 | 1.251007e-48 | -8.615850e-47 |
| Msa0664790 | Msa1086160 | 0.815222 | 1.032479e-51 | -8.615850e-47 |
| Msa0664790 | Msa1086260 | 0.813208 | 2.875733e-51 | -8.615850e-47 |
| Msa0664790 | Msa1088690 | 0.830504 | 2.829376e-55 | -8.615850e-47 |
| Msa0664790 | Msa1127940 | -0.806508 | 7.950055e-50 | -8.615850e-47 |
| Msa0664790 | Msa1138600 | 0.818922 | 1.522437e-52 | -8.615850e-47 |
| Msa0664790 | Msa1195860 | 0.833252 | 5.933495e-56 | -8.615850e-47 |
| Msa0664790 | Msa1211880 | 0.808702 | 2.719725e-50 | -8.615850e-47 |
| Msa0664790 | Msa1244180 | 0.827441 | 1.561947e-54 | -8.615850e-47 |
| Msa0664790 | Msa1248400 | 0.803222 | 3.863454e-49 | -8.615850e-47 |
| Msa0664790 | Msa1267800 | 0.804273 | 2.338281e-49 | -8.615850e-47 |
| Msa0664790 | Msa1286660 | 0.806288 | 8.845282e-50 | -8.615850e-47 |
| Msa0664790 | Msa1298740 | 0.820111 | 8.152070e-53 | -8.615850e-47 |
| Msa0664790 | Msa1327820 | 0.805816 | 1.112008e-49 | -8.615850e-47 |
| Msa0664790 | Msa1373910 | 0.815336 | 9.741848e-52 | -8.615850e-47 |
| Msa0664790 | Msa1394170 | 0.806849 | 6.735481e-50 | -8.615850e-47 |
| Msa0664790 | Msa1406230 | 0.802385 | 5.752720e-49 | -8.615850e-47 |
| Msa0664790 | Msa1420600 | 0.830936 | 2.218009e-55 | -8.615850e-47 |
| Msa0664790 | Msa1425540 | 0.822358 | 2.472424e-53 | -8.615850e-47 |
| Msa0124070 | Msa0664790 | 0.808242 | 3.409147e-50 | -8.615850e-47 |
| Msa0156780 | Msa0664790 | 0.836837 | 7.404845e-57 | -8.615850e-47 |
| Msa0197600 | Msa0664790 | 0.806730 | 7.137780e-50 | -8.615850e-47 |
| Msa0201910 | Msa0664790 | 0.822673 | 2.089105e-53 | -8.615850e-47 |
| Msa0222070 | Msa0664790 | 0.822257 | 2.609955e-53 | -8.615850e-47 |
| Msa0222120 | Msa0664790 | 0.821358 | 4.212165e-53 | -8.615850e-47 |
| Msa0227290 | Msa0664790 | 0.831040 | 2.090471e-55 | -8.615850e-47 |
| Msa0227490 | Msa0664790 | 0.809531 | 1.807121e-50 | -8.615850e-47 |
| Msa0365150 | Msa0664790 | 0.825007 | 5.926015e-54 | -8.615850e-47 |
| Msa0370510 | Msa0664790 | 0.818095 | 2.343735e-52 | -8.615850e-47 |
| Msa0372350 | Msa0664790 | 0.804372 | 2.230065e-49 | -8.615850e-47 |
| Msa0480010 | Msa0664790 | 0.802369 | 5.798118e-49 | -8.615850e-47 |
| Msa0240290 | Msa0664790 | 0.822151 | 2.761593e-53 | -8.615850e-47 |
| Msa0244370 | Msa0664790 | 0.814517 | 1.479832e-51 | -8.615850e-47 |
| Msa0253410 | Msa0664790 | 0.803743 | 3.014136e-49 | -8.615850e-47 |
| Msa0263620 | Msa0664790 | 0.822159 | 2.749781e-53 | -8.615850e-47 |
| Msa0268180 | Msa0664790 | 0.801831 | 7.478634e-49 | -8.615850e-47 |
| Msa0268420 | Msa0664790 | 0.802996 | 4.303725e-49 | -8.615850e-47 |
| Msa0269060 | Msa0664790 | 0.814523 | 1.475015e-51 | -8.615850e-47 |
| Msa0281570 | Msa0664790 | 0.807272 | 5.482226e-50 | -8.615850e-47 |
| Msa0282880 | Msa0664790 | 0.803944 | 2.737474e-49 | -8.615850e-47 |
| Msa0295520 | Msa0664790 | 0.801404 | 9.151334e-49 | -8.615850e-47 |
| Msa0301460 | Msa0664790 | 0.826209 | 3.076105e-54 | -8.615850e-47 |
| Msa0317630 | Msa0664790 | 0.817227 | 3.678959e-52 | -8.615850e-47 |
| Msa0320540 | Msa0664790 | 0.817734 | 2.828459e-52 | -8.615850e-47 |
| Msa0321180 | Msa0664790 | 0.800632 | 1.315936e-48 | -8.615850e-47 |
| Msa0321200 | Msa0664790 | 0.806421 | 8.294556e-50 | -8.615850e-47 |
| Msa0344070 | Msa0664790 | 0.821289 | 4.370832e-53 | -8.615850e-47 |
| Msa0361040 | Msa0664790 | 0.800935 | 1.141135e-48 | -8.615850e-47 |
| Msa0534890 | Msa0664790 | 0.809950 | 1.468607e-50 | -8.615850e-47 |
| Msa0582710 | Msa0664790 | 0.803745 | 3.010110e-49 | -8.615850e-47 |
| Msa0586890 | Msa0664790 | 0.990759 | 3.473138e-184 | -8.615850e-47 |
| Msa0595780 | Msa0664790 | 0.821586 | 3.731542e-53 | -8.615850e-47 |
| Msa0598680 | Msa0664790 | 0.808598 | 2.863475e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664790 | MtrunA17_Chr4g0002851 | 83.422 | 187 | 19 | 3 | 1 | 186 | 1 | 176 | 9.26e-104 | 296 |
| Msa0664790 | MtrunA17_Chr7g0233441 | 80.214 | 187 | 25 | 3 | 1 | 186 | 1 | 176 | 9.17e-98 | 281 |
| Msa0664790 | MtrunA17_Chr4g0002831 | 70.256 | 195 | 50 | 5 | 1 | 192 | 1 | 190 | 1.07e-85 | 251 |
| Msa0664790 | MtrunA17_Chr2g0333621 | 46.207 | 145 | 61 | 4 | 57 | 186 | 149 | 291 | 1.28e-25 | 100 |
| Msa0664790 | MtrunA17_Chr4g0002801 | 35.751 | 193 | 93 | 4 | 12 | 186 | 131 | 310 | 1.42e-23 | 95.5 |
| Msa0664790 | MtrunA17_Chr4g0002781 | 35.912 | 181 | 86 | 5 | 22 | 186 | 163 | 329 | 2.20e-23 | 95.1 |
| Msa0664790 | MtrunA17_Chr5g0400621 | 43.284 | 134 | 65 | 2 | 70 | 192 | 182 | 315 | 4.23e-21 | 89.0 |
| Msa0664790 | MtrunA17_Chr5g0400641 | 38.686 | 137 | 73 | 2 | 70 | 195 | 23 | 159 | 8.80e-21 | 84.3 |
| Msa0664790 | MtrunA17_Chr2g0333611 | 38.095 | 147 | 81 | 3 | 50 | 186 | 49 | 195 | 9.83e-21 | 85.9 |
| Msa0664790 | MtrunA17_Chr5g0400661 | 40.000 | 140 | 60 | 4 | 71 | 186 | 175 | 314 | 3.13e-19 | 83.6 |
| Msa0664790 | MtrunA17_Chr8g0336681 | 35.762 | 151 | 72 | 3 | 58 | 186 | 168 | 315 | 2.21e-18 | 81.6 |
| Msa0664790 | MtrunA17_Chr7g0225901 | 36.842 | 133 | 61 | 4 | 71 | 186 | 114 | 240 | 4.68e-18 | 79.3 |
| Msa0664790 | MtrunA17_Chr2g0280161 | 36.154 | 130 | 71 | 2 | 71 | 188 | 203 | 332 | 7.32e-18 | 80.1 |
| Msa0664790 | MtrunA17_Chr2g0333641 | 39.437 | 142 | 72 | 3 | 57 | 186 | 148 | 287 | 1.87e-17 | 78.6 |
| Msa0664790 | MtrunA17_Chr4g0049331 | 33.588 | 131 | 76 | 2 | 70 | 189 | 160 | 290 | 1.44e-16 | 76.3 |
| Msa0664790 | MtrunA17_Chr4g0033391 | 32.886 | 149 | 79 | 3 | 53 | 186 | 154 | 296 | 1.22e-15 | 73.6 |
| Msa0664790 | MtrunA17_Chr6g0468461 | 35.537 | 121 | 69 | 2 | 70 | 187 | 198 | 312 | 2.63e-15 | 72.8 |
| Msa0664790 | MtrunA17_Chr5g0400671 | 34.921 | 126 | 74 | 2 | 70 | 187 | 179 | 304 | 4.27e-15 | 72.0 |
| Msa0664790 | MtrunA17_Chr4g0033291 | 34.228 | 149 | 77 | 4 | 53 | 186 | 162 | 304 | 7.27e-15 | 71.6 |
| Msa0664790 | MtrunA17_Chr6g0468491 | 36.090 | 133 | 62 | 4 | 71 | 186 | 163 | 289 | 1.06e-14 | 70.9 |
| Msa0664790 | MtrunA17_Chr2g0307131 | 34.328 | 134 | 65 | 3 | 70 | 186 | 204 | 331 | 1.42e-14 | 70.9 |
| Msa0664790 | MtrunA17_Chr2g0307141 | 31.783 | 129 | 75 | 2 | 70 | 186 | 208 | 335 | 6.56e-14 | 68.9 |
| Msa0664790 | MtrunA17_Chr4g0033281 | 33.099 | 142 | 87 | 3 | 53 | 186 | 160 | 301 | 1.32e-13 | 68.2 |
| Msa0664790 | MtrunA17_Chr7g0249811 | 34.286 | 140 | 77 | 3 | 56 | 186 | 175 | 308 | 1.55e-13 | 67.8 |
| Msa0664790 | MtrunA17_Chr4g0054621 | 33.884 | 121 | 74 | 3 | 71 | 186 | 198 | 317 | 4.37e-13 | 66.6 |
| Msa0664790 | MtrunA17_Chr2g0333541 | 35.526 | 152 | 82 | 4 | 50 | 186 | 98 | 248 | 8.94e-13 | 65.1 |
| Msa0664790 | MtrunA17_Chr4g0054581 | 31.507 | 146 | 69 | 5 | 70 | 192 | 223 | 360 | 3.98e-12 | 63.9 |
| Msa0664790 | MtrunA17_Chr4g0054551 | 35.714 | 126 | 72 | 4 | 70 | 186 | 180 | 305 | 3.67e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664790 | AT4G37850.2 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0664790 | AT4G37850.1 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0664790 | AT2G22760.2 | 36.232 | 138 | 74 | 3 | 70 | 193 | 144 | 281 | 5.32e-17 | 77.4 |
| Msa0664790 | AT2G22760.1 | 35.115 | 131 | 71 | 3 | 70 | 186 | 144 | 274 | 8.95e-16 | 73.9 |
| Msa0664790 | AT2G22770.1 | 33.544 | 158 | 78 | 3 | 56 | 186 | 142 | 299 | 8.03e-14 | 68.9 |
Find 47 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGTAGAGTCTTGAATTT+TGG | 0.151614 | 4_4:-4041725 | Msa0664790:CDS |
| TACATTACATATATAGTTCT+TGG | 0.239735 | 4_4:-4045811 | Msa0664790:five_prime_UTR |
| TTGGGTTGTTATATAATATA+GGG | 0.248624 | 4_4:+4045878 | None:intergenic |
| AGTTCTTGGAACAAAATTAA+TGG | 0.286364 | 4_4:-4045797 | Msa0664790:exon |
| TTGGCCTTCTAATTCTGATT+TGG | 0.292992 | 4_4:-4045758 | Msa0664790:intron |
| TTTACCAAATCAGAATTAGA+AGG | 0.359501 | 4_4:+4045754 | None:intergenic |
| GTTGGGTTGTTATATAATAT+AGG | 0.359629 | 4_4:+4045877 | None:intergenic |
| TGGAGGAGTCGGGAGAAAAT+TGG | 0.405975 | 4_4:-4045777 | Msa0664790:CDS |
| AACACTCTTGCTTTGACCTC+TGG | 0.412988 | 4_4:+4041845 | None:intergenic |
| GGTTGTGAAGGTGAGTAATA+TGG | 0.419505 | 4_4:+4045962 | None:intergenic |
| ACGAACCTTCTTTAAGCCTA+TGG | 0.424699 | 4_4:+4045478 | None:intergenic |
| TGGGTTGTTATATAATATAG+GGG | 0.430477 | 4_4:+4045879 | None:intergenic |
| GGAGATCACAGAGATGTTGC+AGG | 0.441683 | 4_4:-4045513 | Msa0664790:CDS |
| GTCCAATGTGAGGAACAAAA+TGG | 0.442895 | 4_4:-4041800 | Msa0664790:CDS |
| GTAGTAATTTGAACTCAGTT+TGG | 0.459681 | 4_4:+4041895 | None:intergenic |
| AGATTCTCCATCTTTAAGAA+TGG | 0.468345 | 4_4:+4045622 | None:intergenic |
| GTGTGGATAAGAGGTGGGTT+GGG | 0.484793 | 4_4:+4045860 | None:intergenic |
| AGTGTGGATAAGAGGTGGGT+TGG | 0.494204 | 4_4:+4045859 | None:intergenic |
| AAACAAGAGAATGGTGGTTG+AGG | 0.500954 | 4_4:+4045941 | None:intergenic |
| TAAAGTACAGTGTGGATAAG+AGG | 0.503350 | 4_4:+4045851 | None:intergenic |
| GATGAAGCCATTCTTAAAGA+TGG | 0.508496 | 4_4:-4045629 | Msa0664790:CDS |
| AACAAAATTAATGGAGGAGT+CGG | 0.509366 | 4_4:-4045788 | Msa0664790:exon |
| AGTTCAAATTACTACAATTG+TGG | 0.519204 | 4_4:-4041887 | Msa0664790:CDS |
| CAGGAACTTTCAGACGCCAT+AGG | 0.519378 | 4_4:-4045494 | Msa0664790:CDS |
| AGACGCCATAGGCTTAAAGA+AGG | 0.520059 | 4_4:-4045483 | Msa0664790:intron |
| ATTGACTTGTATATGTACCT+TGG | 0.538882 | 4_4:+4041673 | None:intergenic |
| AGAGAGCTAGAACAAGAAGC+TGG | 0.540149 | 4_4:-4041941 | Msa0664790:CDS |
| ACAAAATTAATGGAGGAGTC+GGG | 0.571828 | 4_4:-4045787 | Msa0664790:exon |
| GTACAGTGTGGATAAGAGGT+GGG | 0.573739 | 4_4:+4045855 | None:intergenic |
| TGACATCACCATTGTTGCCA+AGG | 0.577300 | 4_4:-4041690 | Msa0664790:CDS |
| TACAAAGGAAAACAATGAGA+AGG | 0.583439 | 4_4:-4045534 | Msa0664790:CDS |
| AGTACAGTGTGGATAAGAGG+TGG | 0.587741 | 4_4:+4045854 | None:intergenic |
| GGGTTGTTATATAATATAGG+GGG | 0.595894 | 4_4:+4045880 | None:intergenic |
| TGGCAACAATGGTGATGTCA+AGG | 0.603091 | 4_4:+4041693 | None:intergenic |
| GATTCAACATTTGTAACGAA+AGG | 0.607336 | 4_4:-4041919 | Msa0664790:CDS |
| GGTTGTTATATAATATAGGG+GGG | 0.613478 | 4_4:+4045881 | None:intergenic |
| AATGGTGGTTGAGGTTGTGA+AGG | 0.616577 | 4_4:+4045950 | None:intergenic |
| TCTTGGAACAAAATTAATGG+AGG | 0.624977 | 4_4:-4045794 | Msa0664790:exon |
| TATATGTACCTTGGCAACAA+TGG | 0.630484 | 4_4:+4041682 | None:intergenic |
| AAGAATGATAAAGTACAGTG+TGG | 0.634617 | 4_4:+4045843 | None:intergenic |
| ATCTGTATGTGATGATGATG+AGG | 0.647394 | 4_4:-4045597 | Msa0664790:CDS |
| ATGAATTGAGTCGCTCACAC+AGG | 0.656277 | 4_4:-4045995 | Msa0664790:five_prime_UTR |
| GGCAACAATGGTGATGTCAA+GGG | 0.668997 | 4_4:+4041694 | None:intergenic |
| AAGTGATATTACTCTTCCAG+AGG | 0.685126 | 4_4:-4041861 | Msa0664790:CDS |
| AGATCCCACAGATAATACAA+AGG | 0.692675 | 4_4:-4045549 | Msa0664790:CDS |
| AACAATGGTGATGTCAAGGG+TGG | 0.697013 | 4_4:+4041697 | None:intergenic |
| ACTCGTCATAGTCCAATGTG+AGG | 0.715682 | 4_4:-4041810 | Msa0664790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTTTAAATAAAAT+AGG | - | chr4_4:4042475-4042494 | Msa0664790:intron | 0.0% |
| !!! | ATTATTTTTTAAATAAAATA+GGG | - | chr4_4:4042476-4042495 | Msa0664790:intron | 0.0% |
| !!! | TTTTTTTTTTTATAATTTAA+AGG | - | chr4_4:4044636-4044655 | Msa0664790:intron | 0.0% |
| !! | AATCATATGTATTATATAAT+AGG | + | chr4_4:4041925-4041944 | None:intergenic | 10.0% |
| !! | ATATTTATACTTTAAATGAA+TGG | - | chr4_4:4042209-4042228 | Msa0664790:intron | 10.0% |
| !!! | AATATTTTTTAGTATAAAGA+AGG | + | chr4_4:4042404-4042423 | None:intergenic | 10.0% |
| !!! | ATTTTTGTAAATGTTATTAA+TGG | + | chr4_4:4042783-4042802 | None:intergenic | 10.0% |
| !! | GTAAATTGAATTAAAAAAAT+GGG | + | chr4_4:4043896-4043915 | None:intergenic | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | + | chr4_4:4043895-4043914 | None:intergenic | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | - | chr4_4:4043895-4043914 | Msa0664790:intron | 10.0% |
| !!! | CTTCATATAATATATTTTTA+AGG | - | chr4_4:4045989-4046008 | Msa0664790:five_prime_UTR | 10.0% |
| !!! | AATATAAGGAACTTTATTTA+TGG | + | chr4_4:4042907-4042926 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCAAACAAC+AGG | + | chr4_4:4043478-4043497 | None:intergenic | 15.0% |
| !!! | GTTGTTTGATTTTTTTTTTT+TGG | - | chr4_4:4043478-4043497 | Msa0664790:intron | 15.0% |
| !!! | TTTTTGTACCAATTAATTTT+GGG | + | chr4_4:4044706-4044725 | None:intergenic | 15.0% |
| !!! | TTTTTTGTACCAATTAATTT+TGG | + | chr4_4:4044707-4044726 | None:intergenic | 15.0% |
| !! | TATATGCACTTATAAATAAT+AGG | - | chr4_4:4045566-4045585 | Msa0664790:CDS | 15.0% |
| !! | ATATGCACTTATAAATAATA+GGG | - | chr4_4:4045567-4045586 | Msa0664790:CDS | 15.0% |
| !! | AGAAAAAAAAAACAAGAGAA+TGG | + | chr4_4:4041705-4041724 | None:intergenic | 20.0% |
| !!! | TTGGGTTGTTATATAATATA+GGG | + | chr4_4:4041759-4041778 | None:intergenic | 20.0% |
| !! | TACATTACATATATAGTTCT+TGG | - | chr4_4:4041823-4041842 | Msa0664790:CDS | 20.0% |
| !!! | TGTTTTTTGCATTTATTCAT+AGG | - | chr4_4:4041974-4041993 | Msa0664790:CDS | 20.0% |
| !!! | TTTTTTAGTATAAAGAAGGT+TGG | + | chr4_4:4042400-4042419 | None:intergenic | 20.0% |
| !! | TAGATTTCATATTTATCCAA+CGG | + | chr4_4:4042680-4042699 | None:intergenic | 20.0% |
| !! | TTTAACTATCCACTAATTAA+TGG | + | chr4_4:4043177-4043196 | None:intergenic | 20.0% |
| !! | ATATCCATGGATAAAATAAA+CGG | + | chr4_4:4043204-4043223 | None:intergenic | 20.0% |
| !!! | TTATTTTATGAGAAAATGCT+AGG | - | chr4_4:4043360-4043379 | Msa0664790:intron | 20.0% |
| !!! | TATTTTATGAGAAAATGCTA+GGG | - | chr4_4:4043361-4043380 | Msa0664790:intron | 20.0% |
| !!! | ATGATTTTCTGTACATTTTT+TGG | + | chr4_4:4043731-4043750 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTCTTTTAGAAAC+AGG | - | chr4_4:4043858-4043877 | Msa0664790:intron | 20.0% |
| !! | AATTAAAAAAATGGAACACA+TGG | - | chr4_4:4043904-4043923 | Msa0664790:intron | 20.0% |
| !! | ATAAAATAAGAGAAATGCTA+GGG | + | chr4_4:4043975-4043994 | None:intergenic | 20.0% |
| !! | TATAAAATAAGAGAAATGCT+AGG | + | chr4_4:4043976-4043995 | None:intergenic | 20.0% |
| !!! | GGTTTTTTCATATTATTTGT+CGG | + | chr4_4:4045039-4045058 | None:intergenic | 20.0% |
| !! | CTTATTTAGATTGAAAGAAA+AGG | - | chr4_4:4045282-4045301 | Msa0664790:intron | 20.0% |
| !!! | ACAATTTTCATATTGTACAA+CGG | - | chr4_4:4045476-4045495 | Msa0664790:intron | 20.0% |
| ! | AAAAAAAAACAAGAGAATGG+TGG | + | chr4_4:4041702-4041721 | None:intergenic | 25.0% |
| ! | TGGGTTGTTATATAATATAG+GGG | + | chr4_4:4041758-4041777 | None:intergenic | 25.0% |
| !! | GTTGGGTTGTTATATAATAT+AGG | + | chr4_4:4041760-4041779 | None:intergenic | 25.0% |
| ! | AGTTCTTGGAACAAAATTAA+TGG | - | chr4_4:4041837-4041856 | Msa0664790:CDS | 25.0% |
| ! | TTTACCAAATCAGAATTAGA+AGG | + | chr4_4:4041883-4041902 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTATTATCTGT+GGG | + | chr4_4:4042092-4042111 | None:intergenic | 25.0% |
| !!! | ACCAGTTTTTTTTTTGTTGA+AGG | - | chr4_4:4042255-4042274 | Msa0664790:intron | 25.0% |
| ! | TCCTTCAACAAAAAAAAAAC+TGG | + | chr4_4:4042259-4042278 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCGATGATCTTTA+TGG | + | chr4_4:4042878-4042897 | None:intergenic | 25.0% |
| !!! | TTTTGCTTAGGAAAGTATTA+AGG | - | chr4_4:4043073-4043092 | Msa0664790:intron | 25.0% |
| ! | TAAATTCCTCGATTAAATAG+CGG | - | chr4_4:4043105-4043124 | Msa0664790:intron | 25.0% |
| !! | TATCCACTAATTAATGGATA+CGG | + | chr4_4:4043171-4043190 | None:intergenic | 25.0% |
| !!! | ATATCCGTTTATTTTATCCA+TGG | - | chr4_4:4043197-4043216 | Msa0664790:intron | 25.0% |
| !! | ATTTTATCCGCAAATATTCA+CGG | - | chr4_4:4043256-4043275 | Msa0664790:intron | 25.0% |
| ! | AATTAAAAAAATGGGACACA+TGG | + | chr4_4:4043432-4043451 | None:intergenic | 25.0% |
| !!! | TTTCTGTACATTTTTTGGAT+CGG | + | chr4_4:4043726-4043745 | None:intergenic | 25.0% |
| ! | CTACCTTAAATAATGTTACA+TGG | - | chr4_4:4043801-4043820 | Msa0664790:intron | 25.0% |
| ! | GATCCATGTAACATTATTTA+AGG | + | chr4_4:4043807-4043826 | None:intergenic | 25.0% |
| ! | TAAAATCTTACTTAAGAGTG+TGG | - | chr4_4:4044011-4044030 | Msa0664790:intron | 25.0% |
| ! | TTTCACAAAACCAATTTATG+AGG | + | chr4_4:4044564-4044583 | None:intergenic | 25.0% |
| !!! | ACCAATTAATTTTGGGAAAA+GGG | + | chr4_4:4044699-4044718 | None:intergenic | 25.0% |
| !!! | TACCAATTAATTTTGGGAAA+AGG | + | chr4_4:4044700-4044719 | None:intergenic | 25.0% |
| ! | CAATGAAAAGAAATCATTGT+CGG | - | chr4_4:4044764-4044783 | Msa0664790:intron | 25.0% |
| ! | AATGAAAAGAAATCATTGTC+GGG | - | chr4_4:4044765-4044784 | Msa0664790:intron | 25.0% |
| ! | AACATCGCTAAAAATGTAAA+AGG | - | chr4_4:4044958-4044977 | Msa0664790:intron | 25.0% |
| ! | ACAAATTCAACCAATGATTT+GGG | + | chr4_4:4045106-4045125 | None:intergenic | 25.0% |
| ! | TACAAATTCAACCAATGATT+TGG | + | chr4_4:4045107-4045126 | None:intergenic | 25.0% |
| ! | GAAATCACAAAAAACACAAA+AGG | - | chr4_4:4045234-4045253 | Msa0664790:intron | 25.0% |
| ! | AAAAAAGCTTATAGAGAAGT+TGG | - | chr4_4:4045387-4045406 | Msa0664790:intron | 25.0% |
| ! | AGTTCAAATTACTACAATTG+TGG | - | chr4_4:4045747-4045766 | Msa0664790:intron | 25.0% |
| GGTTGTTATATAATATAGGG+GGG | + | chr4_4:4041756-4041775 | None:intergenic | 30.0% | |
| GGGTTGTTATATAATATAGG+GGG | + | chr4_4:4041757-4041776 | None:intergenic | 30.0% | |
| AAGAATGATAAAGTACAGTG+TGG | + | chr4_4:4041794-4041813 | None:intergenic | 30.0% | |
| TCTTGGAACAAAATTAATGG+AGG | - | chr4_4:4041840-4041859 | Msa0664790:CDS | 30.0% | |
| AACAAAATTAATGGAGGAGT+CGG | - | chr4_4:4041846-4041865 | Msa0664790:CDS | 30.0% | |
| ! | AGATTCTCCATCTTTAAGAA+TGG | + | chr4_4:4042015-4042034 | None:intergenic | 30.0% |
| !!! | GGATCATTATTTTGAAGATC+AGG | - | chr4_4:4042058-4042077 | Msa0664790:intron | 30.0% |
| !!! | CATTATTTTGAAGATCAGGT+TGG | - | chr4_4:4042062-4042081 | Msa0664790:intron | 30.0% |
| ! | GTTTTCCTTTGTATTATCTG+TGG | + | chr4_4:4042093-4042112 | None:intergenic | 30.0% |
| TACAAAGGAAAACAATGAGA+AGG | - | chr4_4:4042100-4042119 | Msa0664790:intron | 30.0% | |
| AGTGACTTAAGATTGAAGAT+AGG | - | chr4_4:4042604-4042623 | Msa0664790:intron | 30.0% | |
| GTGACTTAAGATTGAAGATA+GGG | - | chr4_4:4042605-4042624 | Msa0664790:intron | 30.0% | |
| ATTGAAGATAGGGATGTAAA+TGG | - | chr4_4:4042615-4042634 | Msa0664790:intron | 30.0% | |
| TGTTATTACGCTCCTTTAAA+AGG | + | chr4_4:4043033-4043052 | None:intergenic | 30.0% | |
| AAATTCCTCGATTAAATAGC+GGG | - | chr4_4:4043106-4043125 | Msa0664790:intron | 30.0% | |
| ! | TTTTTGCCATCTCTAATTGA+AGG | - | chr4_4:4043288-4043307 | Msa0664790:intron | 30.0% |
| !! | TGTTAAAAGAGAGTGTTAGT+GGG | + | chr4_4:4043392-4043411 | None:intergenic | 30.0% |
| ! | TGGCAATTGAGCAATAATTT+TGG | + | chr4_4:4043558-4043577 | None:intergenic | 30.0% |
| TTGATTCAATTCAACACTTG+AGG | - | chr4_4:4043599-4043618 | Msa0664790:intron | 30.0% | |
| ! | CTTTTCACAGAAACAATGAA+CGG | - | chr4_4:4043677-4043696 | Msa0664790:intron | 30.0% |
| ! | CTGGAAATTTTATGATATCG+TGG | + | chr4_4:4043754-4043773 | None:intergenic | 30.0% |
| !! | AACACATGGCTGATTTTTAT+TGG | - | chr4_4:4043918-4043937 | Msa0664790:intron | 30.0% |
| !! | ACACATGGCTGATTTTTATT+GGG | - | chr4_4:4043919-4043938 | Msa0664790:intron | 30.0% |
| ! | TAAGAGTGTGGTTTAAACAA+AGG | - | chr4_4:4044023-4044042 | Msa0664790:intron | 30.0% |
| !! | ACCTTAAAAATCGGTTTTGT+GGG | - | chr4_4:4044129-4044148 | Msa0664790:intron | 30.0% |
| AGATCCAAACCTATTTAAGA+TGG | - | chr4_4:4044359-4044378 | Msa0664790:intron | 30.0% | |
| GATACCATCTTAAATAGGTT+TGG | + | chr4_4:4044366-4044385 | None:intergenic | 30.0% | |
| GTTCTGATACCATCTTAAAT+AGG | + | chr4_4:4044371-4044390 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+AGG | - | chr4_4:4044097-4044116 | Msa0664790:intron | 30.0% | |
| GACAATGTGTTTATAAGTGA+GGG | - | chr4_4:4044098-4044117 | Msa0664790:intron | 30.0% | |
| !!! | TGGTTTTGTGAAATTGTGTT+AGG | - | chr4_4:4044571-4044590 | Msa0664790:intron | 30.0% |
| ! | ATTGACTTTCTTAGAAATCG+TGG | + | chr4_4:4044602-4044621 | None:intergenic | 30.0% |
| ! | TCCCTTTTCCCAAAATTAAT+TGG | - | chr4_4:4044695-4044714 | Msa0664790:intron | 30.0% |
| ! | CGACAATGATTTCTTTTCAT+TGG | + | chr4_4:4044766-4044785 | None:intergenic | 30.0% |
| ATGAAAAGAAATCATTGTCG+GGG | - | chr4_4:4044766-4044785 | Msa0664790:intron | 30.0% | |
| TGGTTCGTTATACTTTCTAA+AGG | - | chr4_4:4044795-4044814 | Msa0664790:intron | 30.0% | |
| ATCGTTGTATGCTATTAACT+TGG | + | chr4_4:4045010-4045029 | None:intergenic | 30.0% | |
| ! | AGATGTAGATGAGTGATTTT+AGG | - | chr4_4:4045317-4045336 | Msa0664790:intron | 30.0% |
| ATATTGTACAACGGATAAGT+TGG | - | chr4_4:4045485-4045504 | Msa0664790:CDS | 30.0% | |
| TCTCTATATAAATGTGTAGC+TGG | - | chr4_4:4045611-4045630 | Msa0664790:CDS | 30.0% | |
| GATTCAACATTTGTAACGAA+AGG | - | chr4_4:4045715-4045734 | Msa0664790:intron | 30.0% | |
| GTAGTAATTTGAACTCAGTT+TGG | + | chr4_4:4045742-4045761 | None:intergenic | 30.0% | |
| !! | AAGATGAAGATTTTCAAGGT+TGG | + | chr4_4:4045880-4045899 | None:intergenic | 30.0% |
| ! | CTGAAAGATGAAGATTTTCA+AGG | + | chr4_4:4045884-4045903 | None:intergenic | 30.0% |
| ! | AACAGTAGAGTCTTGAATTT+TGG | - | chr4_4:4045909-4045928 | Msa0664790:five_prime_UTR | 30.0% |
| !! | ATTGACTTGTATATGTACCT+TGG | + | chr4_4:4045964-4045983 | None:intergenic | 30.0% |
| TAAAGTACAGTGTGGATAAG+AGG | + | chr4_4:4041786-4041805 | None:intergenic | 35.0% | |
| ACAAAATTAATGGAGGAGTC+GGG | - | chr4_4:4041847-4041866 | Msa0664790:CDS | 35.0% | |
| ! | TTGGCCTTCTAATTCTGATT+TGG | - | chr4_4:4041876-4041895 | Msa0664790:CDS | 35.0% |
| AATAGGTACGTGATTGCAAT+TGG | + | chr4_4:4041908-4041927 | None:intergenic | 35.0% | |
| GATGAAGCCATTCTTAAAGA+TGG | - | chr4_4:4042005-4042024 | Msa0664790:CDS | 35.0% | |
| ! | ATCTGTATGTGATGATGATG+AGG | - | chr4_4:4042037-4042056 | Msa0664790:intron | 35.0% |
| AGATCCCACAGATAATACAA+AGG | - | chr4_4:4042085-4042104 | Msa0664790:intron | 35.0% | |
| TAAATGGATATCCATGGATG+TGG | - | chr4_4:4042631-4042650 | Msa0664790:intron | 35.0% | |
| TAAAAGGAAGTGAAAGTGGT+CGG | + | chr4_4:4043017-4043036 | None:intergenic | 35.0% | |
| ! | CCTTTAAAAGGAAGTGAAAG+TGG | + | chr4_4:4043021-4043040 | None:intergenic | 35.0% |
| ! | CCACTTTCACTTCCTTTTAA+AGG | - | chr4_4:4043018-4043037 | Msa0664790:intron | 35.0% |
| TAACAACACTCATAGTACTG+AGG | - | chr4_4:4043048-4043067 | Msa0664790:intron | 35.0% | |
| !!! | AGTACTGAGGTTTTTTGCTT+AGG | - | chr4_4:4043061-4043080 | Msa0664790:intron | 35.0% |
| CATCCGTATCCATTAATTAG+TGG | - | chr4_4:4043165-4043184 | Msa0664790:intron | 35.0% | |
| TTATCCATGGATATCCATTC+AGG | - | chr4_4:4043210-4043229 | Msa0664790:intron | 35.0% | |
| TTTGCATCCGTGAATATTTG+CGG | + | chr4_4:4043266-4043285 | None:intergenic | 35.0% | |
| TCGATACCTTCAATTAGAGA+TGG | + | chr4_4:4043297-4043316 | None:intergenic | 35.0% | |
| !! | GTGTTAAAAGAGAGTGTTAG+TGG | + | chr4_4:4043393-4043412 | None:intergenic | 35.0% |
| !! | GACACATGGCTGATTTTTAT+TGG | + | chr4_4:4043418-4043437 | None:intergenic | 35.0% |
| ! | AGAAGAAGTGTATTGCAGTT+TGG | - | chr4_4:4043522-4043541 | Msa0664790:intron | 35.0% |
| CTGCAATACATAGATATTGC+TGG | + | chr4_4:4043578-4043597 | None:intergenic | 35.0% | |
| AAGGTAGAGTAGATTTCGTT+TGG | + | chr4_4:4043788-4043807 | None:intergenic | 35.0% | |
| TGGTAAAAGAGACTGTTAGT+GGG | - | chr4_4:4043944-4043963 | Msa0664790:intron | 35.0% | |
| GTCATACATCTGATAGAAGA+TGG | - | chr4_4:4044072-4044091 | Msa0664790:intron | 35.0% | |
| GCAATCCTCACCTTAAAAAT+CGG | - | chr4_4:4044120-4044139 | Msa0664790:intron | 35.0% | |
| !!! | CAAAACCGATTTTTAAGGTG+AGG | + | chr4_4:4044128-4044147 | None:intergenic | 35.0% |
| !! | CACCTTAAAAATCGGTTTTG+TGG | - | chr4_4:4044128-4044147 | Msa0664790:intron | 35.0% |
| !! | TCCCACAAAACCGATTTTTA+AGG | + | chr4_4:4044133-4044152 | None:intergenic | 35.0% |
| TGATACCATCTTAGAAATCG+TGG | + | chr4_4:4044171-4044190 | None:intergenic | 35.0% | |
| !! | TTCTAAGATGGTATCAGAGT+TGG | - | chr4_4:4044175-4044194 | Msa0664790:intron | 35.0% |
| ! | TCTAAGATGGTATCAGAGTT+GGG | - | chr4_4:4044176-4044195 | Msa0664790:intron | 35.0% |
| TATTTATATGCTCAACAGCC+CGG | + | chr4_4:4044300-4044319 | None:intergenic | 35.0% | |
| AAAGCTAGCTCAAAGGATAA+AGG | + | chr4_4:4044333-4044352 | None:intergenic | 35.0% | |
| !!! | TTATCCTTTGAGCTAGCTTT+TGG | - | chr4_4:4044333-4044352 | Msa0664790:intron | 35.0% |
| TTCTATCAGGTATCCACTAT+CGG | - | chr4_4:4044415-4044434 | Msa0664790:intron | 35.0% | |
| !! | GTTTGGTTTGTGGACATAAA+TGG | + | chr4_4:4044449-4044468 | None:intergenic | 35.0% |
| GCAATCATCACCTCATAAAT+TGG | - | chr4_4:4044551-4044570 | Msa0664790:intron | 35.0% | |
| TGTAGCTTAAGCAAAGTGAA+AGG | - | chr4_4:4044729-4044748 | Msa0664790:intron | 35.0% | |
| TGAAAAGAAATCATTGTCGG+GGG | - | chr4_4:4044767-4044786 | Msa0664790:intron | 35.0% | |
| ACTGATGTCGATCTTTCAAT+AGG | - | chr4_4:4045131-4045150 | Msa0664790:intron | 35.0% | |
| AAGTGATATTACTCTTCCAG+AGG | - | chr4_4:4045773-4045792 | Msa0664790:CDS | 35.0% | |
| ! | TACCATTTTGTTCCTCACAT+TGG | + | chr4_4:4045839-4045858 | None:intergenic | 35.0% |
| TATATGTACCTTGGCAACAA+TGG | + | chr4_4:4045955-4045974 | None:intergenic | 35.0% | |
| GGTTGTGAAGGTGAGTAATA+TGG | + | chr4_4:4041675-4041694 | None:intergenic | 40.0% | |
| AAACAAGAGAATGGTGGTTG+AGG | + | chr4_4:4041696-4041715 | None:intergenic | 40.0% | |
| ACGAACCTTCTTTAAGCCTA+TGG | + | chr4_4:4042159-4042178 | None:intergenic | 40.0% | |
| AAAGCCATATATCCTCGCAT+GGG | + | chr4_4:4042541-4042560 | None:intergenic | 40.0% | |
| GGGATGTAAATGGATATCCA+TGG | - | chr4_4:4042625-4042644 | Msa0664790:intron | 40.0% | |
| AATCACACTATCCACATCCA+TGG | + | chr4_4:4042645-4042664 | None:intergenic | 40.0% | |
| AACGGATATCTGCACGAATA+TGG | + | chr4_4:4042711-4042730 | None:intergenic | 40.0% | |
| ! | TCCATGGATTACCCACTAAA+CGG | + | chr4_4:4042729-4042748 | None:intergenic | 40.0% |
| ! | TGGGTAATCCATGGATTTTG+CGG | - | chr4_4:4042734-4042753 | Msa0664790:intron | 40.0% |
| ! | CATGGATTTTGCGGTATCAA+CGG | - | chr4_4:4042743-4042762 | Msa0664790:intron | 40.0% |
| ! | ATGGATTTTGCGGTATCAAC+GGG | - | chr4_4:4042744-4042763 | Msa0664790:intron | 40.0% |
| AAAAGGAAGTGAAAGTGGTC+GGG | + | chr4_4:4043016-4043035 | None:intergenic | 40.0% | |
| CTTAATGGTATATGCACCTG+CGG | + | chr4_4:4043141-4043160 | None:intergenic | 40.0% | |
| GATAAAATCCACCACGGATA+CGG | + | chr4_4:4043244-4043263 | None:intergenic | 40.0% | |
| TTTGCGGATAAAATCCACCA+CGG | + | chr4_4:4043250-4043269 | None:intergenic | 40.0% | |
| TTCACAGAAACAATGAACGG+CGG | - | chr4_4:4043680-4043699 | Msa0664790:intron | 40.0% | |
| !!! | TCGTTTGGATTGCTGTTTTC+TGG | + | chr4_4:4043773-4043792 | None:intergenic | 40.0% |
| !! | CTTTTAGAAACAGGATGAGC+AGG | - | chr4_4:4043867-4043886 | Msa0664790:intron | 40.0% |
| !! | TGGCTGATTTTTATTGGGTG+TGG | - | chr4_4:4043924-4043943 | Msa0664790:intron | 40.0% |
| GTGGTAAAAGAGACTGTTAG+TGG | - | chr4_4:4043943-4043962 | Msa0664790:intron | 40.0% | |
| ! | TCCAACCACGATTTCTAAGA+TGG | - | chr4_4:4044163-4044182 | Msa0664790:intron | 40.0% |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr4_4:4044167-4044186 | None:intergenic | 40.0% | |
| ATGGTATCAGAGTTGGGTTA+AGG | - | chr4_4:4044182-4044201 | Msa0664790:intron | 40.0% | |
| TCATCCAAAAGCTAGCTCAA+AGG | + | chr4_4:4044340-4044359 | None:intergenic | 40.0% | |
| AGAACCTCTTCAAGATCCAT+TGG | - | chr4_4:4044386-4044405 | Msa0664790:intron | 40.0% | |
| !! | GATAGTGGATACCTGATAGA+AGG | + | chr4_4:4044416-4044435 | None:intergenic | 40.0% |
| TCTATCAGGTATCCACTATC+GGG | - | chr4_4:4044416-4044435 | Msa0664790:intron | 40.0% | |
| GGTTTGTGGACATAAATGGT+GGG | + | chr4_4:4044445-4044464 | None:intergenic | 40.0% | |
| ! | TGGTTTGTGGACATAAATGG+TGG | + | chr4_4:4044446-4044465 | None:intergenic | 40.0% |
| GTGAGTTAAGAGTCCTACAT+CGG | - | chr4_4:4044492-4044511 | Msa0664790:intron | 40.0% | |
| ! | CTTGAATTCAAGTCTTGTCG+CGG | + | chr4_4:4045170-4045189 | None:intergenic | 40.0% |
| ! | TTTTTCTCCTTCGTTCATCG+AGG | + | chr4_4:4045371-4045390 | None:intergenic | 40.0% |
| GTCCAATGTGAGGAACAAAA+TGG | - | chr4_4:4045834-4045853 | Msa0664790:five_prime_UTR | 40.0% | |
| !! | GGTTGGTTAGTATTTTGAGC+AGG | + | chr4_4:4045863-4045882 | None:intergenic | 40.0% |
| AATGGTGGTTGAGGTTGTGA+AGG | + | chr4_4:4041687-4041706 | None:intergenic | 45.0% | |
| GTACAGTGTGGATAAGAGGT+GGG | + | chr4_4:4041782-4041801 | None:intergenic | 45.0% | |
| AGTACAGTGTGGATAAGAGG+TGG | + | chr4_4:4041783-4041802 | None:intergenic | 45.0% | |
| AGACGCCATAGGCTTAAAGA+AGG | - | chr4_4:4042151-4042170 | Msa0664790:intron | 45.0% | |
| GATAATAGATACCCCATGCG+AGG | - | chr4_4:4042526-4042545 | Msa0664790:intron | 45.0% | |
| ATACCCCATGCGAGGATATA+TGG | - | chr4_4:4042534-4042553 | Msa0664790:intron | 45.0% | |
| AAGCCATATATCCTCGCATG+GGG | + | chr4_4:4042540-4042559 | None:intergenic | 45.0% | |
| GAAAGCCATATATCCTCGCA+TGG | + | chr4_4:4042542-4042561 | None:intergenic | 45.0% | |
| ! | GATTTTCGTGTATGCTCCGT+TGG | - | chr4_4:4042661-4042680 | Msa0664790:intron | 45.0% |
| TCGTGCAGATATCCGTTTAG+TGG | - | chr4_4:4042714-4042733 | Msa0664790:intron | 45.0% | |
| CGTGCAGATATCCGTTTAGT+GGG | - | chr4_4:4042715-4042734 | Msa0664790:intron | 45.0% | |
| ! | TCCGTTTAGTGGGTAATCCA+TGG | - | chr4_4:4042725-4042744 | Msa0664790:intron | 45.0% |
| CGTTGATACCGCAAAATCCA+TGG | + | chr4_4:4042745-4042764 | None:intergenic | 45.0% | |
| CCATACCCGCTATTTAATCG+AGG | + | chr4_4:4043114-4043133 | None:intergenic | 45.0% | |
| !! | CCTCGATTAAATAGCGGGTA+TGG | - | chr4_4:4043111-4043130 | Msa0664790:intron | 45.0% |
| GGATACGGATGCAGACTTAA+TGG | + | chr4_4:4043156-4043175 | None:intergenic | 45.0% | |
| GAGACCTGAATGGATATCCA+TGG | + | chr4_4:4043217-4043236 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTGGGATTGTGTT+AGG | - | chr4_4:4044140-4044159 | Msa0664790:intron | 45.0% |
| TTGGGTTAAGGTTTGCGTTG+TGG | - | chr4_4:4044194-4044213 | Msa0664790:intron | 45.0% | |
| TGGGTTAAGGTTTGCGTTGT+GGG | - | chr4_4:4044195-4044214 | Msa0664790:intron | 45.0% | |
| TTGTTTGTCTCACATCCCAC+AGG | - | chr4_4:4044271-4044290 | Msa0664790:intron | 45.0% | |
| TGGTCCAATGGATCTTGAAG+AGG | + | chr4_4:4044393-4044412 | None:intergenic | 45.0% | |
| AGTGGATACCTGATAGAAGG+TGG | + | chr4_4:4044413-4044432 | None:intergenic | 45.0% | |
| ! | TTGTGGACATAAATGGTGGG+CGG | + | chr4_4:4044442-4044461 | None:intergenic | 45.0% |
| GTCCTACATCGGATAGATCA+TGG | - | chr4_4:4044503-4044522 | Msa0664790:intron | 45.0% | |
| GACCATGATCTATCCGATGT+AGG | + | chr4_4:4044508-4044527 | None:intergenic | 45.0% | |
| ATCTGTGAGCGTGGGTATTT+CGG | + | chr4_4:4045069-4045088 | None:intergenic | 45.0% | |
| AACGTTGACGCCCAAATCAT+TGG | - | chr4_4:4045093-4045112 | Msa0664790:intron | 45.0% | |
| GTGTAGTTAGTCGTCTTGTG+CGG | + | chr4_4:4045195-4045214 | None:intergenic | 45.0% | |
| GTGATTTCGTCGTCTAAGTG+CGG | + | chr4_4:4045222-4045241 | None:intergenic | 45.0% | |
| AGAGAGCTAGAACAAGAAGC+TGG | - | chr4_4:4045693-4045712 | Msa0664790:intron | 45.0% | |
| AACACTCTTGCTTTGACCTC+TGG | + | chr4_4:4045792-4045811 | None:intergenic | 45.0% | |
| ACTCGTCATAGTCCAATGTG+AGG | - | chr4_4:4045824-4045843 | Msa0664790:five_prime_UTR | 45.0% | |
| ! | AACAATGGTGATGTCAAGGG+TGG | + | chr4_4:4045940-4045959 | None:intergenic | 45.0% |
| ! | GGCAACAATGGTGATGTCAA+GGG | + | chr4_4:4045943-4045962 | None:intergenic | 45.0% |
| ! | TGGCAACAATGGTGATGTCA+AGG | + | chr4_4:4045944-4045963 | None:intergenic | 45.0% |
| TGACATCACCATTGTTGCCA+AGG | - | chr4_4:4045944-4045963 | Msa0664790:five_prime_UTR | 45.0% | |
| !!! | CTTTATTTTTATTAAATATA+AGG | + | chr4_4:4042921-4042940 | None:intergenic | 5.0% |
| !!! | TTCATATAATATATTTTTAA+GGG | - | chr4_4:4045990-4046009 | Msa0664790:five_prime_UTR | 5.0% |
| ! | GTGTGGATAAGAGGTGGGTT+GGG | + | chr4_4:4041777-4041796 | None:intergenic | 50.0% |
| AGTGTGGATAAGAGGTGGGT+TGG | + | chr4_4:4041778-4041797 | None:intergenic | 50.0% | |
| TGGAGGAGTCGGGAGAAAAT+TGG | - | chr4_4:4041857-4041876 | Msa0664790:CDS | 50.0% | |
| GGAGATCACAGAGATGTTGC+AGG | - | chr4_4:4042121-4042140 | Msa0664790:intron | 50.0% | |
| CAGGAACTTTCAGACGCCAT+AGG | - | chr4_4:4042140-4042159 | Msa0664790:intron | 50.0% | |
| !! | AGAGAGAGAGCACTGCATCT+AGG | + | chr4_4:4043647-4043666 | None:intergenic | 50.0% |
| ACAGAAACAATGAACGGCGG+TGG | - | chr4_4:4043683-4043702 | Msa0664790:intron | 50.0% | |
| GGGTTAAGGTTTGCGTTGTG+GGG | - | chr4_4:4044196-4044215 | Msa0664790:intron | 50.0% | |
| TCTCACATCCCACAGGTTTC+CGG | - | chr4_4:4044278-4044297 | Msa0664790:intron | 50.0% | |
| CCTGATAGAAGGTGGTCCAA+TGG | + | chr4_4:4044405-4044424 | None:intergenic | 50.0% | |
| CCATTGGACCACCTTCTATC+AGG | - | chr4_4:4044402-4044421 | Msa0664790:intron | 50.0% | |
| !! | GCACTATCGGGTTTGGTTTG+TGG | + | chr4_4:4044459-4044478 | None:intergenic | 50.0% |
| CAAACCAAACCCGATAGTGC+TGG | - | chr4_4:4044459-4044478 | Msa0664790:intron | 50.0% | |
| AATCATTGTCGGGGGACAGT+TGG | - | chr4_4:4044775-4044794 | Msa0664790:intron | 50.0% | |
| CGTGGGTATTTCGGTGACTT+AGG | + | chr4_4:4045060-4045079 | None:intergenic | 50.0% | |
| ! | CATCGAGGAGGGGTAGTTTT+AGG | + | chr4_4:4045356-4045375 | None:intergenic | 50.0% |
| TCTCCTTCGTTCATCGAGGA+GGG | + | chr4_4:4045367-4045386 | None:intergenic | 50.0% | |
| TTCTCCTTCGTTCATCGAGG+AGG | + | chr4_4:4045368-4045387 | None:intergenic | 50.0% | |
| ! | TAGCGGGTATGGATATCCGC+AGG | - | chr4_4:4043122-4043141 | Msa0664790:intron | 55.0% |
| ATACGGAGCGGAGACCTGAA+TGG | + | chr4_4:4043227-4043246 | None:intergenic | 55.0% | |
| AATCCACCACGGATACGGAG+CGG | + | chr4_4:4043239-4043258 | None:intergenic | 55.0% | |
| GAAACAATGAACGGCGGTGG+TGG | - | chr4_4:4043686-4043705 | Msa0664790:intron | 55.0% | |
| GGTTTGCGTTGTGGGGATTC+AGG | - | chr4_4:4044203-4044222 | Msa0664790:intron | 55.0% | |
| CTCACATCCCACAGGTTTCC+GGG | - | chr4_4:4044279-4044298 | Msa0664790:intron | 55.0% | |
| TCAACAGCCCGGAAACCTGT+GGG | + | chr4_4:4044289-4044308 | None:intergenic | 55.0% | |
| ACGACCAGCACTATCGGGTT+TGG | + | chr4_4:4044466-4044485 | None:intergenic | 55.0% | |
| CCTTCACGACCAGCACTATC+GGG | + | chr4_4:4044471-4044490 | None:intergenic | 55.0% | |
| CCCTTCACGACCAGCACTAT+CGG | + | chr4_4:4044472-4044491 | None:intergenic | 55.0% | |
| !! | CCGATAGTGCTGGTCGTGAA+GGG | - | chr4_4:4044469-4044488 | Msa0664790:intron | 55.0% |
| !! | CGATAGTGCTGGTCGTGAAG+GGG | - | chr4_4:4044470-4044489 | Msa0664790:intron | 55.0% |
| CGTTGCAGATCTGTGAGCGT+GGG | + | chr4_4:4045077-4045096 | None:intergenic | 55.0% | |
| ACGTTGCAGATCTGTGAGCG+TGG | + | chr4_4:4045078-4045097 | None:intergenic | 55.0% | |
| TACCCCTCCTCGATGAACGA+AGG | - | chr4_4:4045361-4045380 | Msa0664790:intron | 55.0% | |
| CTCCTTCGTTCATCGAGGAG+GGG | + | chr4_4:4045366-4045385 | None:intergenic | 55.0% | |
| ! | ACAATGAACGGCGGTGGTGG+CGG | - | chr4_4:4043689-4043708 | Msa0664790:intron | 60.0% |
| CTCAACAGCCCGGAAACCTG+TGG | + | chr4_4:4044290-4044309 | None:intergenic | 60.0% | |
| !! | CCCGATAGTGCTGGTCGTGA+AGG | - | chr4_4:4044468-4044487 | Msa0664790:intron | 60.0% |
| AGGTCTCCGCTCCGTATCCG+TGG | - | chr4_4:4043230-4043249 | Msa0664790:intron | 65.0% | |
| TCTCCGCTCCGTATCCGTGG+TGG | - | chr4_4:4043233-4043252 | Msa0664790:intron | 65.0% | |
| ! | CAATGAACGGCGGTGGTGGC+GGG | - | chr4_4:4043690-4043709 | Msa0664790:intron | 65.0% |
| TGGGGATTCAGGCCCACGCT+AGG | - | chr4_4:4044214-4044233 | Msa0664790:intron | 65.0% | |
| TCAGGCCCACGCTAGGCATG+AGG | - | chr4_4:4044221-4044240 | Msa0664790:intron | 65.0% | |
| CAGGCCCACGCTAGGCATGA+GGG | - | chr4_4:4044222-4044241 | Msa0664790:intron | 65.0% | |
| CCCACCCTCATGCCTAGCGT+GGG | + | chr4_4:4044229-4044248 | None:intergenic | 65.0% | |
| CCCACGCTAGGCATGAGGGT+GGG | - | chr4_4:4044226-4044245 | Msa0664790:intron | 65.0% | |
| ACCCACCCTCATGCCTAGCG+TGG | + | chr4_4:4044230-4044249 | None:intergenic | 65.0% | |
| !! | AATGGTGGGCGGCCCGATAG+TGG | + | chr4_4:4044431-4044450 | None:intergenic | 65.0% |
| GCCCACGCTAGGCATGAGGG+TGG | - | chr4_4:4044225-4044244 | Msa0664790:intron | 70.0% | |
| !! | CGGCGGTGGTGGCGGGATCT+AGG | - | chr4_4:4043697-4043716 | Msa0664790:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4041641 | 4046015 | 4041641 | ID=Msa0664790;Name=Msa0664790 |
| chr4_4 | mRNA | 4041641 | 4046015 | 4041641 | ID=Msa0664790-mRNA-1;Parent=Msa0664790;Name=Msa0664790-mRNA-1;_AED=0.18;_eAED=0.18;_QI=215|1|1|1|1|1|3|17|195 |
| chr4_4 | exon | 4041641 | 4042026 | 4041641 | ID=Msa0664790-mRNA-1:exon:1323;Parent=Msa0664790-mRNA-1 |
| chr4_4 | exon | 4045484 | 4045660 | 4045484 | ID=Msa0664790-mRNA-1:exon:1322;Parent=Msa0664790-mRNA-1 |
| chr4_4 | exon | 4045759 | 4046015 | 4045759 | ID=Msa0664790-mRNA-1:exon:1321;Parent=Msa0664790-mRNA-1 |
| chr4_4 | five_prime_UTR | 4045801 | 4046015 | 4045801 | ID=Msa0664790-mRNA-1:five_prime_utr;Parent=Msa0664790-mRNA-1 |
| chr4_4 | CDS | 4045759 | 4045800 | 4045759 | ID=Msa0664790-mRNA-1:cds;Parent=Msa0664790-mRNA-1 |
| chr4_4 | CDS | 4045484 | 4045660 | 4045484 | ID=Msa0664790-mRNA-1:cds;Parent=Msa0664790-mRNA-1 |
| chr4_4 | CDS | 4041658 | 4042026 | 4041658 | ID=Msa0664790-mRNA-1:cds;Parent=Msa0664790-mRNA-1 |
| chr4_4 | three_prime_UTR | 4041641 | 4041657 | 4041641 | ID=Msa0664790-mRNA-1:three_prime_utr;Parent=Msa0664790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
