Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586890 | KEH28665.1 | 84.211 | 190 | 18 | 3 | 1 | 189 | 1 | 179 | 1.43e-102 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586890 | sp|Q9T072|BH025_ARATH | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.08e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028410 | Msa0586890 | 0.812884 | 3.385800e-51 | -8.615850e-47 |
| Msa0050360 | Msa0586890 | 0.828363 | 9.371936e-55 | -8.615850e-47 |
| Msa0050400 | Msa0586890 | 0.832313 | 1.014871e-55 | -8.615850e-47 |
| Msa0065190 | Msa0586890 | 0.800040 | 1.736837e-48 | -8.615850e-47 |
| Msa0092750 | Msa0586890 | 0.832745 | 7.933846e-56 | -8.615850e-47 |
| Msa0093530 | Msa0586890 | -0.803411 | 3.530878e-49 | -8.615850e-47 |
| Msa0094420 | Msa0586890 | 0.812295 | 4.555253e-51 | -8.615850e-47 |
| Msa0124070 | Msa0586890 | 0.818877 | 1.558503e-52 | -8.615850e-47 |
| Msa0126960 | Msa0586890 | -0.803803 | 2.928341e-49 | -8.615850e-47 |
| Msa0156780 | Msa0586890 | 0.841871 | 3.652051e-58 | -8.615850e-47 |
| Msa0186750 | Msa0586890 | 0.800068 | 1.714420e-48 | -8.615850e-47 |
| Msa0197600 | Msa0586890 | 0.813573 | 2.390409e-51 | -8.615850e-47 |
| Msa0201910 | Msa0586890 | 0.828345 | 9.468495e-55 | -8.615850e-47 |
| Msa0222070 | Msa0586890 | 0.822185 | 2.712432e-53 | -8.615850e-47 |
| Msa0222120 | Msa0586890 | 0.820661 | 6.096859e-53 | -8.615850e-47 |
| Msa0227290 | Msa0586890 | 0.831980 | 1.226956e-55 | -8.615850e-47 |
| Msa0227490 | Msa0586890 | 0.807590 | 4.691735e-50 | -8.615850e-47 |
| Msa0365150 | Msa0586890 | 0.821864 | 3.217967e-53 | -8.615850e-47 |
| Msa0370510 | Msa0586890 | 0.819124 | 1.369353e-52 | -8.615850e-47 |
| Msa0372350 | Msa0586890 | 0.805824 | 1.107837e-49 | -8.615850e-47 |
| Msa0482020 | Msa0586890 | 0.805016 | 1.635976e-49 | -8.615850e-47 |
| Msa0240290 | Msa0586890 | 0.828395 | 9.208951e-55 | -8.615850e-47 |
| Msa0244370 | Msa0586890 | 0.819686 | 1.019546e-52 | -8.615850e-47 |
| Msa0253410 | Msa0586890 | 0.811858 | 5.673294e-51 | -8.615850e-47 |
| Msa0263620 | Msa0586890 | 0.821710 | 3.493928e-53 | -8.615850e-47 |
| Msa0268180 | Msa0586890 | 0.813500 | 2.480667e-51 | -8.615850e-47 |
| Msa0268420 | Msa0586890 | 0.813532 | 2.441180e-51 | -8.615850e-47 |
| Msa0268650 | Msa0586890 | 0.802223 | 6.212542e-49 | -8.615850e-47 |
| Msa0268760 | Msa0586890 | 0.801420 | 9.080066e-49 | -8.615850e-47 |
| Msa0268850 | Msa0586890 | 0.804727 | 1.880466e-49 | -8.615850e-47 |
| Msa0269060 | Msa0586890 | 0.824654 | 7.180139e-54 | -8.615850e-47 |
| Msa0278080 | Msa0586890 | 0.806921 | 6.502606e-50 | -8.615850e-47 |
| Msa0281570 | Msa0586890 | 0.808565 | 2.909602e-50 | -8.615850e-47 |
| Msa0282880 | Msa0586890 | 0.810100 | 1.363109e-50 | -8.615850e-47 |
| Msa0295520 | Msa0586890 | 0.803216 | 3.876146e-49 | -8.615850e-47 |
| Msa0301460 | Msa0586890 | 0.827674 | 1.373321e-54 | -8.615850e-47 |
| Msa0307490 | Msa0586890 | 0.800145 | 1.653398e-48 | -8.615850e-47 |
| Msa0317630 | Msa0586890 | 0.828848 | 7.156426e-55 | -8.615850e-47 |
| Msa0320540 | Msa0586890 | 0.817328 | 3.490815e-52 | -8.615850e-47 |
| Msa0321180 | Msa0586890 | 0.806939 | 6.446725e-50 | -8.615850e-47 |
| Msa0321200 | Msa0586890 | 0.813345 | 2.682391e-51 | -8.615850e-47 |
| Msa0344070 | Msa0586890 | 0.821187 | 4.613024e-53 | -8.615850e-47 |
| Msa0361040 | Msa0586890 | 0.806219 | 9.148440e-50 | -8.615850e-47 |
| Msa0532880 | Msa0586890 | 0.800205 | 1.607562e-48 | -8.615850e-47 |
| Msa0534890 | Msa0586890 | 0.809709 | 1.654911e-50 | -8.615850e-47 |
| Msa0553520 | Msa0586890 | 0.800451 | 1.432503e-48 | -8.615850e-47 |
| Msa0577140 | Msa0586890 | 0.804286 | 2.323458e-49 | -8.615850e-47 |
| Msa0582710 | Msa0586890 | 0.814674 | 1.366160e-51 | -8.615850e-47 |
| Msa0582830 | Msa0586890 | 0.813564 | 2.400916e-51 | -8.615850e-47 |
| Msa0586890 | Msa0587060 | 0.805078 | 1.587616e-49 | -8.615850e-47 |
| Msa0586890 | Msa0591370 | 0.802817 | 4.685238e-49 | -8.615850e-47 |
| Msa0586890 | Msa0595780 | 0.820267 | 7.505170e-53 | -8.615850e-47 |
| Msa0586890 | Msa0598680 | 0.808484 | 3.027419e-50 | -8.615850e-47 |
| Msa0586890 | Msa0626700 | 0.871370 | 7.194868e-67 | -8.615850e-47 |
| Msa0586890 | Msa0631340 | 0.801756 | 7.748930e-49 | -8.615850e-47 |
| Msa0586890 | Msa0659640 | 0.802024 | 6.825997e-49 | -8.615850e-47 |
| Msa0586890 | Msa0664790 | 0.990759 | 3.473138e-184 | -8.615850e-47 |
| Msa0586890 | Msa0669710 | 0.811614 | 6.410485e-51 | -8.615850e-47 |
| Msa0586890 | Msa0669750 | 0.817186 | 3.758427e-52 | -8.615850e-47 |
| Msa0586890 | Msa0679270 | 0.809622 | 1.727996e-50 | -8.615850e-47 |
| Msa0586890 | Msa0698860 | 0.808719 | 2.697297e-50 | -8.615850e-47 |
| Msa0586890 | Msa0698880 | 0.829052 | 6.386561e-55 | -8.615850e-47 |
| Msa0586890 | Msa0727020 | 0.802277 | 6.054444e-49 | -8.615850e-47 |
| Msa0586890 | Msa0743630 | 0.816428 | 5.557758e-52 | -8.615850e-47 |
| Msa0586890 | Msa0766880 | 0.812382 | 4.359642e-51 | -8.615850e-47 |
| Msa0586890 | Msa0771940 | 0.807144 | 5.834899e-50 | -8.615850e-47 |
| Msa0586890 | Msa0793060 | 0.817527 | 3.148088e-52 | -8.615850e-47 |
| Msa0586890 | Msa0804930 | 0.818766 | 1.651850e-52 | -8.615850e-47 |
| Msa0586890 | Msa0824750 | 0.803064 | 4.166200e-49 | -8.615850e-47 |
| Msa0586890 | Msa0863780 | 0.813020 | 3.162570e-51 | -8.615850e-47 |
| Msa0586890 | Msa0867990 | 0.988824 | 1.467278e-175 | -8.615850e-47 |
| Msa0586890 | Msa0872110 | 0.802750 | 4.838272e-49 | -8.615850e-47 |
| Msa0586890 | Msa0907520 | 0.804337 | 2.267808e-49 | -8.615850e-47 |
| Msa0586890 | Msa0931090 | 0.800013 | 1.758720e-48 | -8.615850e-47 |
| Msa0586890 | Msa0931280 | 0.823570 | 1.289766e-53 | -8.615850e-47 |
| Msa0586890 | Msa0967450 | 0.805078 | 1.587747e-49 | -8.615850e-47 |
| Msa0586890 | Msa0983030 | 0.809972 | 1.452941e-50 | -8.615850e-47 |
| Msa0586890 | Msa1077940 | -0.802872 | 4.564332e-49 | -8.615850e-47 |
| Msa0586890 | Msa1086060 | 0.808518 | 2.978378e-50 | -8.615850e-47 |
| Msa0586890 | Msa1086160 | 0.830580 | 2.711016e-55 | -8.615850e-47 |
| Msa0586890 | Msa1086170 | 0.805472 | 1.313067e-49 | -8.615850e-47 |
| Msa0586890 | Msa1086260 | 0.824567 | 7.524524e-54 | -8.615850e-47 |
| Msa0586890 | Msa1086290 | 0.807056 | 6.089181e-50 | -8.615850e-47 |
| Msa0586890 | Msa1088690 | 0.825675 | 4.118975e-54 | -8.615850e-47 |
| Msa0586890 | Msa1127940 | -0.810573 | 1.077787e-50 | -8.615850e-47 |
| Msa0586890 | Msa1138600 | 0.817004 | 4.129279e-52 | -8.615850e-47 |
| Msa0586890 | Msa1165860 | -0.803245 | 3.821287e-49 | -8.615850e-47 |
| Msa0586890 | Msa1182950 | 0.803100 | 4.094828e-49 | -8.615850e-47 |
| Msa0586890 | Msa1195860 | 0.838318 | 3.088423e-57 | -8.615850e-47 |
| Msa0586890 | Msa1208510 | 0.804492 | 2.105374e-49 | -8.615850e-47 |
| Msa0586890 | Msa1209390 | 0.808654 | 2.785451e-50 | -8.615850e-47 |
| Msa0586890 | Msa1209650 | 0.804831 | 1.788659e-49 | -8.615850e-47 |
| Msa0586890 | Msa1211880 | 0.814711 | 1.340552e-51 | -8.615850e-47 |
| Msa0586890 | Msa1244180 | 0.820990 | 5.121639e-53 | -8.615850e-47 |
| Msa0586890 | Msa1248400 | 0.806746 | 7.080572e-50 | -8.615850e-47 |
| Msa0586890 | Msa1267800 | 0.812416 | 4.286397e-51 | -8.615850e-47 |
| Msa0586890 | Msa1286660 | 0.814748 | 1.315696e-51 | -8.615850e-47 |
| Msa0586890 | Msa1292700 | 0.800405 | 1.463904e-48 | -8.615850e-47 |
| Msa0586890 | Msa1298740 | 0.826287 | 2.947236e-54 | -8.615850e-47 |
| Msa0586890 | Msa1309910 | 0.801005 | 1.104177e-48 | -8.615850e-47 |
| Msa0586890 | Msa1327820 | 0.807022 | 6.191288e-50 | -8.615850e-47 |
| Msa0586890 | Msa1330240 | 0.802713 | 4.922350e-49 | -8.615850e-47 |
| Msa0586890 | Msa1354850 | 0.801135 | 1.038745e-48 | -8.615850e-47 |
| Msa0586890 | Msa1355020 | 0.809220 | 2.107508e-50 | -8.615850e-47 |
| Msa0586890 | Msa1373910 | 0.815876 | 7.384652e-52 | -8.615850e-47 |
| Msa0586890 | Msa1394090 | 0.807371 | 5.221664e-50 | -8.615850e-47 |
| Msa0586890 | Msa1394170 | 0.817095 | 3.939418e-52 | -8.615850e-47 |
| Msa0586890 | Msa1394240 | 0.800253 | 1.571427e-48 | -8.615850e-47 |
| Msa0586890 | Msa1406230 | 0.801429 | 9.042851e-49 | -8.615850e-47 |
| Msa0586890 | Msa1420600 | 0.836149 | 1.108142e-56 | -8.615850e-47 |
| Msa0586890 | Msa1425540 | 0.827427 | 1.573910e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586890 | MtrunA17_Chr4g0002851 | 83.422 | 187 | 19 | 3 | 1 | 186 | 1 | 176 | 9.26e-104 | 296 |
| Msa0586890 | MtrunA17_Chr7g0233441 | 80.214 | 187 | 25 | 3 | 1 | 186 | 1 | 176 | 9.17e-98 | 281 |
| Msa0586890 | MtrunA17_Chr4g0002831 | 70.256 | 195 | 50 | 5 | 1 | 192 | 1 | 190 | 1.07e-85 | 251 |
| Msa0586890 | MtrunA17_Chr2g0333621 | 46.207 | 145 | 61 | 4 | 57 | 186 | 149 | 291 | 1.28e-25 | 100 |
| Msa0586890 | MtrunA17_Chr4g0002801 | 35.751 | 193 | 93 | 4 | 12 | 186 | 131 | 310 | 1.42e-23 | 95.5 |
| Msa0586890 | MtrunA17_Chr4g0002781 | 35.912 | 181 | 86 | 5 | 22 | 186 | 163 | 329 | 2.20e-23 | 95.1 |
| Msa0586890 | MtrunA17_Chr5g0400621 | 43.284 | 134 | 65 | 2 | 70 | 192 | 182 | 315 | 4.23e-21 | 89.0 |
| Msa0586890 | MtrunA17_Chr5g0400641 | 38.686 | 137 | 73 | 2 | 70 | 195 | 23 | 159 | 8.80e-21 | 84.3 |
| Msa0586890 | MtrunA17_Chr2g0333611 | 38.095 | 147 | 81 | 3 | 50 | 186 | 49 | 195 | 9.83e-21 | 85.9 |
| Msa0586890 | MtrunA17_Chr5g0400661 | 40.000 | 140 | 60 | 4 | 71 | 186 | 175 | 314 | 3.13e-19 | 83.6 |
| Msa0586890 | MtrunA17_Chr8g0336681 | 35.762 | 151 | 72 | 3 | 58 | 186 | 168 | 315 | 2.21e-18 | 81.6 |
| Msa0586890 | MtrunA17_Chr7g0225901 | 36.842 | 133 | 61 | 4 | 71 | 186 | 114 | 240 | 4.68e-18 | 79.3 |
| Msa0586890 | MtrunA17_Chr2g0280161 | 36.154 | 130 | 71 | 2 | 71 | 188 | 203 | 332 | 7.32e-18 | 80.1 |
| Msa0586890 | MtrunA17_Chr2g0333641 | 39.437 | 142 | 72 | 3 | 57 | 186 | 148 | 287 | 1.87e-17 | 78.6 |
| Msa0586890 | MtrunA17_Chr4g0049331 | 33.588 | 131 | 76 | 2 | 70 | 189 | 160 | 290 | 1.44e-16 | 76.3 |
| Msa0586890 | MtrunA17_Chr4g0033391 | 32.886 | 149 | 79 | 3 | 53 | 186 | 154 | 296 | 1.22e-15 | 73.6 |
| Msa0586890 | MtrunA17_Chr6g0468461 | 35.537 | 121 | 69 | 2 | 70 | 187 | 198 | 312 | 2.63e-15 | 72.8 |
| Msa0586890 | MtrunA17_Chr5g0400671 | 34.921 | 126 | 74 | 2 | 70 | 187 | 179 | 304 | 4.27e-15 | 72.0 |
| Msa0586890 | MtrunA17_Chr4g0033291 | 34.228 | 149 | 77 | 4 | 53 | 186 | 162 | 304 | 7.27e-15 | 71.6 |
| Msa0586890 | MtrunA17_Chr6g0468491 | 36.090 | 133 | 62 | 4 | 71 | 186 | 163 | 289 | 1.06e-14 | 70.9 |
| Msa0586890 | MtrunA17_Chr2g0307131 | 34.328 | 134 | 65 | 3 | 70 | 186 | 204 | 331 | 1.42e-14 | 70.9 |
| Msa0586890 | MtrunA17_Chr2g0307141 | 31.783 | 129 | 75 | 2 | 70 | 186 | 208 | 335 | 6.56e-14 | 68.9 |
| Msa0586890 | MtrunA17_Chr4g0033281 | 33.099 | 142 | 87 | 3 | 53 | 186 | 160 | 301 | 1.32e-13 | 68.2 |
| Msa0586890 | MtrunA17_Chr7g0249811 | 34.286 | 140 | 77 | 3 | 56 | 186 | 175 | 308 | 1.55e-13 | 67.8 |
| Msa0586890 | MtrunA17_Chr4g0054621 | 33.884 | 121 | 74 | 3 | 71 | 186 | 198 | 317 | 4.37e-13 | 66.6 |
| Msa0586890 | MtrunA17_Chr2g0333541 | 35.526 | 152 | 82 | 4 | 50 | 186 | 98 | 248 | 8.94e-13 | 65.1 |
| Msa0586890 | MtrunA17_Chr4g0054581 | 31.507 | 146 | 69 | 5 | 70 | 192 | 223 | 360 | 3.98e-12 | 63.9 |
| Msa0586890 | MtrunA17_Chr4g0054551 | 35.714 | 126 | 72 | 4 | 70 | 186 | 180 | 305 | 3.67e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586890 | AT4G37850.2 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0586890 | AT4G37850.1 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0586890 | AT2G22760.2 | 36.232 | 138 | 74 | 3 | 70 | 193 | 144 | 281 | 5.32e-17 | 77.4 |
| Msa0586890 | AT2G22760.1 | 35.115 | 131 | 71 | 3 | 70 | 186 | 144 | 274 | 8.95e-16 | 73.9 |
| Msa0586890 | AT2G22770.1 | 33.544 | 158 | 78 | 3 | 56 | 186 | 142 | 299 | 8.03e-14 | 68.9 |
Find 54 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGTAGAGTCTTGAATTT+TGG | 0.151614 | 4_2:-8396595 | Msa0586890:CDS |
| AAATGCTATTTAATGAATTA+TGG | 0.190163 | 4_2:-8396412 | Msa0586890:three_prime_UTR |
| ATAATAATATATATTCTATT+TGG | 0.210339 | 4_2:-8396482 | Msa0586890:three_prime_UTR |
| TACATTACATATATAGTTCT+TGG | 0.239735 | 4_2:-8400670 | Msa0586890:five_prime_UTR |
| TTGGGTTGTTATATAATATA+GGG | 0.248624 | 4_2:+8400737 | None:intergenic |
| AGTTCTTGGAACAAAATTAA+TGG | 0.286364 | 4_2:-8400656 | Msa0586890:exon |
| TTGGCCTTCTAATTCTGATT+TGG | 0.292992 | 4_2:-8400617 | Msa0586890:intron |
| TTTACCAAATCAGAATTAGA+AGG | 0.359501 | 4_2:+8400613 | None:intergenic |
| GTTGGGTTGTTATATAATAT+AGG | 0.359629 | 4_2:+8400736 | None:intergenic |
| TGGAGGAGTCGGGAGAAAAT+TGG | 0.405975 | 4_2:-8400636 | Msa0586890:CDS |
| AACACTCTTGCTTTGACCTC+TGG | 0.412988 | 4_2:+8396715 | None:intergenic |
| GGTTGTGAAGGTGAGTAATA+TGG | 0.419505 | 4_2:+8400821 | None:intergenic |
| ACGAACCTTCTTTAAGCCTA+TGG | 0.424699 | 4_2:+8400337 | None:intergenic |
| TGGGTTGTTATATAATATAG+GGG | 0.430477 | 4_2:+8400738 | None:intergenic |
| GGAGATCACAGAGATGTTGC+AGG | 0.441683 | 4_2:-8400372 | Msa0586890:CDS |
| GTCCAATGTGAGGAACAAAA+TGG | 0.442895 | 4_2:-8396670 | Msa0586890:CDS |
| GTAGTAATTTGAACTCAGTT+TGG | 0.459681 | 4_2:+8396765 | None:intergenic |
| ACTTCAACTATAACATCTAC+TGG | 0.461549 | 4_2:+8396383 | None:intergenic |
| AGATTCTCCATCTTTAAGAA+TGG | 0.468345 | 4_2:+8400481 | None:intergenic |
| GTGTGGATAAGAGGTGGGTT+GGG | 0.484793 | 4_2:+8400719 | None:intergenic |
| AGTGTGGATAAGAGGTGGGT+TGG | 0.494204 | 4_2:+8400718 | None:intergenic |
| AAACAAGAGAATGGTGGTTG+AGG | 0.500954 | 4_2:+8400800 | None:intergenic |
| TACCCCTCACTCATTGATCA+TGG | 0.501812 | 4_2:+8396324 | None:intergenic |
| TAAAGTACAGTGTGGATAAG+AGG | 0.503350 | 4_2:+8400710 | None:intergenic |
| GATGAAGCCATTCTTAAAGA+TGG | 0.508496 | 4_2:-8400488 | Msa0586890:CDS |
| AACAAAATTAATGGAGGAGT+CGG | 0.509366 | 4_2:-8400647 | Msa0586890:exon |
| AGTTCAAATTACTACAATTG+TGG | 0.519204 | 4_2:-8396757 | Msa0586890:CDS |
| CAGGAACTTTCAGACGCCAT+AGG | 0.519378 | 4_2:-8400353 | Msa0586890:CDS |
| AGACGCCATAGGCTTAAAGA+AGG | 0.520059 | 4_2:-8400342 | Msa0586890:intron |
| ATTGACTTGTATATGTACCT+TGG | 0.538882 | 4_2:+8396543 | None:intergenic |
| AGAGAGCTAGAACAAGAAGC+TGG | 0.540149 | 4_2:-8396811 | Msa0586890:CDS |
| ACAAAATTAATGGAGGAGTC+GGG | 0.571828 | 4_2:-8400646 | Msa0586890:exon |
| GTACAGTGTGGATAAGAGGT+GGG | 0.573739 | 4_2:+8400714 | None:intergenic |
| TGACATCACCATTGTTGCCA+AGG | 0.577300 | 4_2:-8396560 | Msa0586890:CDS |
| TACAAAGGAAAACAATGAGA+AGG | 0.583439 | 4_2:-8400393 | Msa0586890:CDS |
| AGTACAGTGTGGATAAGAGG+TGG | 0.587741 | 4_2:+8400713 | None:intergenic |
| GGGTTGTTATATAATATAGG+GGG | 0.595894 | 4_2:+8400739 | None:intergenic |
| TATCCATGATCAATGAGTGA+GGG | 0.597713 | 4_2:-8396327 | Msa0586890:three_prime_UTR |
| TGGCAACAATGGTGATGTCA+AGG | 0.603091 | 4_2:+8396563 | None:intergenic |
| GATTCAACATTTGTAACGAA+AGG | 0.607336 | 4_2:-8396789 | Msa0586890:CDS |
| GGTTGTTATATAATATAGGG+GGG | 0.613478 | 4_2:+8400740 | None:intergenic |
| AATGGTGGTTGAGGTTGTGA+AGG | 0.616577 | 4_2:+8400809 | None:intergenic |
| TCTTGGAACAAAATTAATGG+AGG | 0.624977 | 4_2:-8400653 | Msa0586890:exon |
| TATATGTACCTTGGCAACAA+TGG | 0.630484 | 4_2:+8396552 | None:intergenic |
| AAGAATGATAAAGTACAGTG+TGG | 0.634617 | 4_2:+8400702 | None:intergenic |
| ATCCATGATCAATGAGTGAG+GGG | 0.635555 | 4_2:-8396326 | Msa0586890:three_prime_UTR |
| ATCTGTATGTGATGATGATG+AGG | 0.647394 | 4_2:-8400456 | Msa0586890:CDS |
| ATATCCATGATCAATGAGTG+AGG | 0.651570 | 4_2:-8396328 | Msa0586890:three_prime_UTR |
| ATGAATTGAGTCGCTCACAC+AGG | 0.656277 | 4_2:-8400854 | Msa0586890:five_prime_UTR |
| GGCAACAATGGTGATGTCAA+GGG | 0.668997 | 4_2:+8396564 | None:intergenic |
| AAGTGATATTACTCTTCCAG+AGG | 0.685126 | 4_2:-8396731 | Msa0586890:CDS |
| AGATCCCACAGATAATACAA+AGG | 0.692675 | 4_2:-8400408 | Msa0586890:CDS |
| AACAATGGTGATGTCAAGGG+TGG | 0.697013 | 4_2:+8396567 | None:intergenic |
| ACTCGTCATAGTCCAATGTG+AGG | 0.715682 | 4_2:-8396680 | Msa0586890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTATAATTTAA+AGG | - | chr4_2:8399325-8399344 | Msa0586890:intron | 0.0% |
| !! | AATCATATGTATTATATAAT+AGG | + | chr4_2:8396608-8396627 | None:intergenic | 10.0% |
| !! | ATATTTATACTTTAAATGAA+TGG | - | chr4_2:8396892-8396911 | Msa0586890:intron | 10.0% |
| !!! | AATATTTTTTAGTATAAAGA+AGG | + | chr4_2:8397086-8397105 | None:intergenic | 10.0% |
| !!! | ATTTTTGTAAATGTTATTAA+TGG | + | chr4_2:8397470-8397489 | None:intergenic | 10.0% |
| !! | GTAAATTGAATTAAAAAAAT+GGG | + | chr4_2:8398585-8398604 | None:intergenic | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | + | chr4_2:8398584-8398603 | None:intergenic | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | - | chr4_2:8398584-8398603 | Msa0586890:intron | 10.0% |
| !!! | CTTCATATAATATATTTTTA+AGG | - | chr4_2:8400661-8400680 | Msa0586890:five_prime_UTR | 10.0% |
| !!! | AATATAAGGAACTTTATTTA+TGG | + | chr4_2:8397594-8397613 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCAAACAAC+AGG | + | chr4_2:8398165-8398184 | None:intergenic | 15.0% |
| !!! | TTTTTGTACCAATTAATTTT+GGG | + | chr4_2:8399378-8399397 | None:intergenic | 15.0% |
| !!! | TTTTTTGTACCAATTAATTT+TGG | + | chr4_2:8399379-8399398 | None:intergenic | 15.0% |
| !! | TATATGCACTTATAAATAAT+AGG | - | chr4_2:8400238-8400257 | Msa0586890:intron | 15.0% |
| !! | ATATGCACTTATAAATAATA+GGG | - | chr4_2:8400239-8400258 | Msa0586890:intron | 15.0% |
| !!! | AAATGCTATTTAATGAATTA+TGG | - | chr4_2:8400764-8400783 | Msa0586890:five_prime_UTR | 15.0% |
| !! | AGAAAAAAAAAACAAGAGAA+TGG | + | chr4_2:8396388-8396407 | None:intergenic | 20.0% |
| !!! | TTGGGTTGTTATATAATATA+GGG | + | chr4_2:8396442-8396461 | None:intergenic | 20.0% |
| !! | TACATTACATATATAGTTCT+TGG | - | chr4_2:8396506-8396525 | Msa0586890:three_prime_UTR | 20.0% |
| !!! | TGTTTTTTGCATTTATTCAT+AGG | - | chr4_2:8396657-8396676 | Msa0586890:CDS | 20.0% |
| !!! | TTTTTTAGTATAAAGAAGGT+TGG | + | chr4_2:8397082-8397101 | None:intergenic | 20.0% |
| !! | TAGATTTCATATTTATCCAA+CGG | + | chr4_2:8397367-8397386 | None:intergenic | 20.0% |
| !! | TTTAACTATCCACTAATTAA+TGG | + | chr4_2:8397864-8397883 | None:intergenic | 20.0% |
| !! | ATATCCATGGATAAAATAAA+CGG | + | chr4_2:8397891-8397910 | None:intergenic | 20.0% |
| !!! | TATTTTATGAGAAAATGCTA+AGG | - | chr4_2:8398048-8398067 | Msa0586890:intron | 20.0% |
| !!! | ATGATTTTCTGTACATTTTT+TGG | + | chr4_2:8398420-8398439 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTCTTTTAGAAAC+AGG | - | chr4_2:8398547-8398566 | Msa0586890:intron | 20.0% |
| !! | AATTAAAAAAATGGAACACA+TGG | - | chr4_2:8398593-8398612 | Msa0586890:intron | 20.0% |
| !! | ATAAAATAAGAGAAATGCTA+GGG | + | chr4_2:8398664-8398683 | None:intergenic | 20.0% |
| !! | TATAAAATAAGAGAAATGCT+AGG | + | chr4_2:8398665-8398684 | None:intergenic | 20.0% |
| !!! | GGTTTTTTCATATTATTTGT+TGG | + | chr4_2:8399712-8399731 | None:intergenic | 20.0% |
| !! | CTTATTTAGATTGAAAGAAA+AGG | - | chr4_2:8399955-8399974 | Msa0586890:intron | 20.0% |
| !!! | ACAATTTTCATATTGTACAA+CGG | - | chr4_2:8400148-8400167 | Msa0586890:intron | 20.0% |
| !!! | ACTTTTTTTTTAGGAAATCT+TGG | + | chr4_2:8400825-8400844 | None:intergenic | 20.0% |
| !!! | GGATATATGACTTTTTTTTT+AGG | + | chr4_2:8400834-8400853 | None:intergenic | 20.0% |
| ! | AAAAAAAAACAAGAGAATGG+TGG | + | chr4_2:8396385-8396404 | None:intergenic | 25.0% |
| ! | TGGGTTGTTATATAATATAG+GGG | + | chr4_2:8396441-8396460 | None:intergenic | 25.0% |
| !! | GTTGGGTTGTTATATAATAT+AGG | + | chr4_2:8396443-8396462 | None:intergenic | 25.0% |
| ! | AGTTCTTGGAACAAAATTAA+TGG | - | chr4_2:8396520-8396539 | Msa0586890:exon | 25.0% |
| ! | TTTACCAAATCAGAATTAGA+AGG | + | chr4_2:8396566-8396585 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTATTATCTGT+GGG | + | chr4_2:8396775-8396794 | None:intergenic | 25.0% |
| !!! | ACCAGTTTTTTTTTTGTTGA+AGG | - | chr4_2:8396938-8396957 | Msa0586890:intron | 25.0% |
| ! | TCCTTCAACAAAAAAAAAAC+TGG | + | chr4_2:8396942-8396961 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCGATGATCTTTA+TGG | + | chr4_2:8397565-8397584 | None:intergenic | 25.0% |
| !!! | TTTTGCTTAGGAAAGTATTA+AGG | - | chr4_2:8397760-8397779 | Msa0586890:intron | 25.0% |
| ! | TAAATTCCTCGATTAAATAG+CGG | - | chr4_2:8397792-8397811 | Msa0586890:intron | 25.0% |
| !! | TATCCACTAATTAATGGATA+CGG | + | chr4_2:8397858-8397877 | None:intergenic | 25.0% |
| !!! | ATATCCGTTTATTTTATCCA+TGG | - | chr4_2:8397884-8397903 | Msa0586890:intron | 25.0% |
| !! | ATTTTATCCGCAAATATTCA+CGG | - | chr4_2:8397943-8397962 | Msa0586890:intron | 25.0% |
| ! | AATTAAAAAAATGGGACACA+TGG | + | chr4_2:8398119-8398138 | None:intergenic | 25.0% |
| !!! | TTTCTGTACATTTTTTGGAT+CGG | + | chr4_2:8398415-8398434 | None:intergenic | 25.0% |
| !! | TTGGAAATTTTATGATATCG+TGG | + | chr4_2:8398443-8398462 | None:intergenic | 25.0% |
| ! | CTACCTTAAATAATGTTACA+TGG | - | chr4_2:8398490-8398509 | Msa0586890:intron | 25.0% |
| ! | GATCCATGTAACATTATTTA+AGG | + | chr4_2:8398496-8398515 | None:intergenic | 25.0% |
| ! | TAAAATCTTACTTAAGAGTG+TGG | - | chr4_2:8398700-8398719 | Msa0586890:intron | 25.0% |
| ! | TTTCACAAAACCAATTTATG+AGG | + | chr4_2:8399253-8399272 | None:intergenic | 25.0% |
| !!! | ACCAATTAATTTTGGGAAAA+GGG | + | chr4_2:8399371-8399390 | None:intergenic | 25.0% |
| !!! | TACCAATTAATTTTGGGAAA+AGG | + | chr4_2:8399372-8399391 | None:intergenic | 25.0% |
| ! | CAATGAAAAGAAATCATTGT+CGG | - | chr4_2:8399436-8399455 | Msa0586890:intron | 25.0% |
| ! | AATGAAAAGAAATCATTGTC+GGG | - | chr4_2:8399437-8399456 | Msa0586890:intron | 25.0% |
| ! | AACATCGCTAAAAATGTAAA+AGG | - | chr4_2:8399631-8399650 | Msa0586890:intron | 25.0% |
| ! | ACAAATTCAACCAATGATTT+GGG | + | chr4_2:8399779-8399798 | None:intergenic | 25.0% |
| ! | TACAAATTCAACCAATGATT+TGG | + | chr4_2:8399780-8399799 | None:intergenic | 25.0% |
| ! | GAAATCACAAAAAACACAAA+AGG | - | chr4_2:8399907-8399926 | Msa0586890:intron | 25.0% |
| ! | AAAAAAGCTTATAGAGAAGT+TGG | - | chr4_2:8400059-8400078 | Msa0586890:intron | 25.0% |
| ! | AGTTCAAATTACTACAATTG+TGG | - | chr4_2:8400419-8400438 | Msa0586890:CDS | 25.0% |
| GGTTGTTATATAATATAGGG+GGG | + | chr4_2:8396439-8396458 | None:intergenic | 30.0% | |
| GGGTTGTTATATAATATAGG+GGG | + | chr4_2:8396440-8396459 | None:intergenic | 30.0% | |
| AAGAATGATAAAGTACAGTG+TGG | + | chr4_2:8396477-8396496 | None:intergenic | 30.0% | |
| TCTTGGAACAAAATTAATGG+AGG | - | chr4_2:8396523-8396542 | Msa0586890:exon | 30.0% | |
| AACAAAATTAATGGAGGAGT+CGG | - | chr4_2:8396529-8396548 | Msa0586890:CDS | 30.0% | |
| ! | AGATTCTCCATCTTTAAGAA+TGG | + | chr4_2:8396698-8396717 | None:intergenic | 30.0% |
| !!! | GGATCATTATTTTGAAGATC+AGG | - | chr4_2:8396741-8396760 | Msa0586890:CDS | 30.0% |
| !!! | CATTATTTTGAAGATCAGGT+TGG | - | chr4_2:8396745-8396764 | Msa0586890:CDS | 30.0% |
| ! | GTTTTCCTTTGTATTATCTG+TGG | + | chr4_2:8396776-8396795 | None:intergenic | 30.0% |
| TACAAAGGAAAACAATGAGA+AGG | - | chr4_2:8396783-8396802 | Msa0586890:CDS | 30.0% | |
| AGTGACTTAAGATTGAAGAT+AGG | - | chr4_2:8397291-8397310 | Msa0586890:intron | 30.0% | |
| GTGACTTAAGATTGAAGATA+GGG | - | chr4_2:8397292-8397311 | Msa0586890:intron | 30.0% | |
| ATTGAAGATAGGGATGTAAA+TGG | - | chr4_2:8397302-8397321 | Msa0586890:intron | 30.0% | |
| TGTTATTACGCTCCTTTAAA+AGG | + | chr4_2:8397720-8397739 | None:intergenic | 30.0% | |
| AAATTCCTCGATTAAATAGC+GGG | - | chr4_2:8397793-8397812 | Msa0586890:intron | 30.0% | |
| AAAGTCGATACCTTCAATTA+GGG | + | chr4_2:8397988-8398007 | None:intergenic | 30.0% | |
| AAAAGTCGATACCTTCAATT+AGG | + | chr4_2:8397989-8398008 | None:intergenic | 30.0% | |
| !! | TGTTAAAAGAGAGTGTTAGT+GGG | + | chr4_2:8398079-8398098 | None:intergenic | 30.0% |
| ! | TGGCAATTGAGCAATAATTT+TGG | + | chr4_2:8398249-8398268 | None:intergenic | 30.0% |
| TTGATTCAATTCAACACTTG+AGG | - | chr4_2:8398290-8398309 | Msa0586890:intron | 30.0% | |
| ! | CTTTTCACAGAAACAATGAA+CGG | - | chr4_2:8398366-8398385 | Msa0586890:intron | 30.0% |
| !! | AACACATGGCTGATTTTTAT+TGG | - | chr4_2:8398607-8398626 | Msa0586890:intron | 30.0% |
| !! | ACACATGGCTGATTTTTATT+GGG | - | chr4_2:8398608-8398627 | Msa0586890:intron | 30.0% |
| ! | TAAGAGTGTGGTTTAAACAA+AGG | - | chr4_2:8398712-8398731 | Msa0586890:intron | 30.0% |
| !! | ACCTTAAAAATCGGTTTTGT+GGG | - | chr4_2:8398818-8398837 | Msa0586890:intron | 30.0% |
| AGATCCAAACCTATTTAAGA+TGG | - | chr4_2:8399048-8399067 | Msa0586890:intron | 30.0% | |
| GATACCATCTTAAATAGGTT+TGG | + | chr4_2:8399055-8399074 | None:intergenic | 30.0% | |
| GTTCTGATACCATCTTAAAT+AGG | + | chr4_2:8399060-8399079 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+AGG | - | chr4_2:8398786-8398805 | Msa0586890:intron | 30.0% | |
| GACAATGTGTTTATAAGTGA+GGG | - | chr4_2:8398787-8398806 | Msa0586890:intron | 30.0% | |
| !!! | TGGTTTTGTGAAATTGTGTT+AGG | - | chr4_2:8399260-8399279 | Msa0586890:intron | 30.0% |
| ! | ATTGACTTTCTTAGAAATCG+TGG | + | chr4_2:8399291-8399310 | None:intergenic | 30.0% |
| ! | TCCCTTTTCCCAAAATTAAT+TGG | - | chr4_2:8399367-8399386 | Msa0586890:intron | 30.0% |
| ! | CGACAATGATTTCTTTTCAT+TGG | + | chr4_2:8399438-8399457 | None:intergenic | 30.0% |
| ATGAAAAGAAATCATTGTCG+GGG | - | chr4_2:8399438-8399457 | Msa0586890:intron | 30.0% | |
| TGGTTCGTTATACTTTCTAA+AGG | - | chr4_2:8399467-8399486 | Msa0586890:intron | 30.0% | |
| ATCGTTGTATGCTATTAACT+TGG | + | chr4_2:8399683-8399702 | None:intergenic | 30.0% | |
| ! | AGATGTAGATGAGTGATTTT+AGG | - | chr4_2:8399990-8400009 | Msa0586890:intron | 30.0% |
| ATATTGTACAACGGATAAGT+TGG | - | chr4_2:8400157-8400176 | Msa0586890:intron | 30.0% | |
| TCTCTATATAAATGTGTAGC+TGG | - | chr4_2:8400283-8400302 | Msa0586890:intron | 30.0% | |
| GATTCAACATTTGTAACGAA+AGG | - | chr4_2:8400387-8400406 | Msa0586890:CDS | 30.0% | |
| GTAGTAATTTGAACTCAGTT+TGG | + | chr4_2:8400414-8400433 | None:intergenic | 30.0% | |
| !! | AAGATGAAGATTTTCAAGGT+TGG | + | chr4_2:8400552-8400571 | None:intergenic | 30.0% |
| ! | CTGAAAGATGAAGATTTTCA+AGG | + | chr4_2:8400556-8400575 | None:intergenic | 30.0% |
| ! | AACAGTAGAGTCTTGAATTT+TGG | - | chr4_2:8400581-8400600 | Msa0586890:intron | 30.0% |
| !! | ATTGACTTGTATATGTACCT+TGG | + | chr4_2:8400636-8400655 | None:intergenic | 30.0% |
| ACTTCAACTATAACATCTAC+TGG | + | chr4_2:8400796-8400815 | None:intergenic | 30.0% | |
| TAAAGTACAGTGTGGATAAG+AGG | + | chr4_2:8396469-8396488 | None:intergenic | 35.0% | |
| ACAAAATTAATGGAGGAGTC+GGG | - | chr4_2:8396530-8396549 | Msa0586890:CDS | 35.0% | |
| ! | TTGGCCTTCTAATTCTGATT+TGG | - | chr4_2:8396559-8396578 | Msa0586890:CDS | 35.0% |
| AATAGGTACGTGATTGCAAT+TGG | + | chr4_2:8396591-8396610 | None:intergenic | 35.0% | |
| GATGAAGCCATTCTTAAAGA+TGG | - | chr4_2:8396688-8396707 | Msa0586890:CDS | 35.0% | |
| ! | ATCTGTATGTGATGATGATG+AGG | - | chr4_2:8396720-8396739 | Msa0586890:CDS | 35.0% |
| AGATCCCACAGATAATACAA+AGG | - | chr4_2:8396768-8396787 | Msa0586890:CDS | 35.0% | |
| TAAATGGATATCCATGGATG+TGG | - | chr4_2:8397318-8397337 | Msa0586890:intron | 35.0% | |
| TATCTGCACGAATATGGATA+AGG | + | chr4_2:8397392-8397411 | None:intergenic | 35.0% | |
| TAAAAGGAAGTGAAAGTGGT+CGG | + | chr4_2:8397704-8397723 | None:intergenic | 35.0% | |
| ! | CCTTTAAAAGGAAGTGAAAG+TGG | + | chr4_2:8397708-8397727 | None:intergenic | 35.0% |
| ! | CCACTTTCACTTCCTTTTAA+AGG | - | chr4_2:8397705-8397724 | Msa0586890:intron | 35.0% |
| TAACAACACTCATAGTACTG+AGG | - | chr4_2:8397735-8397754 | Msa0586890:intron | 35.0% | |
| !!! | AGTACTGAGGTTTTTTGCTT+AGG | - | chr4_2:8397748-8397767 | Msa0586890:intron | 35.0% |
| CATCCGTATCCATTAATTAG+TGG | - | chr4_2:8397852-8397871 | Msa0586890:intron | 35.0% | |
| TTATCCATGGATATCCATTC+AGG | - | chr4_2:8397897-8397916 | Msa0586890:intron | 35.0% | |
| TTTGCATCCGTGAATATTTG+CGG | + | chr4_2:8397953-8397972 | None:intergenic | 35.0% | |
| ! | TTTTTGCCATCCCTAATTGA+AGG | - | chr4_2:8397975-8397994 | Msa0586890:intron | 35.0% |
| !! | GTGTTAAAAGAGAGTGTTAG+TGG | + | chr4_2:8398080-8398099 | None:intergenic | 35.0% |
| !! | GACACATGGCTGATTTTTAT+TGG | + | chr4_2:8398105-8398124 | None:intergenic | 35.0% |
| ! | AGAAGAAGTGTATTGCAGTT+TGG | - | chr4_2:8398213-8398232 | Msa0586890:intron | 35.0% |
| CTGCAATACATAGATATTGC+TGG | + | chr4_2:8398269-8398288 | None:intergenic | 35.0% | |
| !!! | TCGTTTGGATTGCTGTTTTT+TGG | + | chr4_2:8398462-8398481 | None:intergenic | 35.0% |
| AAGGTAGAGTAGATTTCGTT+TGG | + | chr4_2:8398477-8398496 | None:intergenic | 35.0% | |
| !! | TGGTAAAAGAGAGTGTTAGT+GGG | - | chr4_2:8398633-8398652 | Msa0586890:intron | 35.0% |
| GTCATACATCTGATAGAAGA+TGG | - | chr4_2:8398761-8398780 | Msa0586890:intron | 35.0% | |
| GCAATCCTCACCTTAAAAAT+CGG | - | chr4_2:8398809-8398828 | Msa0586890:intron | 35.0% | |
| !!! | CAAAACCGATTTTTAAGGTG+AGG | + | chr4_2:8398817-8398836 | None:intergenic | 35.0% |
| !! | CACCTTAAAAATCGGTTTTG+TGG | - | chr4_2:8398817-8398836 | Msa0586890:intron | 35.0% |
| !! | TCCCACAAAACCGATTTTTA+AGG | + | chr4_2:8398822-8398841 | None:intergenic | 35.0% |
| TGATACCATCTTAGAAATCG+TGG | + | chr4_2:8398860-8398879 | None:intergenic | 35.0% | |
| !! | TTCTAAGATGGTATCAGAGT+TGG | - | chr4_2:8398864-8398883 | Msa0586890:intron | 35.0% |
| ! | TCTAAGATGGTATCAGAGTT+GGG | - | chr4_2:8398865-8398884 | Msa0586890:intron | 35.0% |
| TATTTATATGCTCAACAGCC+CGG | + | chr4_2:8398989-8399008 | None:intergenic | 35.0% | |
| AAAGCTAGCTCAAAGGATAA+AGG | + | chr4_2:8399022-8399041 | None:intergenic | 35.0% | |
| !!! | TTATCCTTTGAGCTAGCTTT+TGG | - | chr4_2:8399022-8399041 | Msa0586890:intron | 35.0% |
| TTCTATCAGGTATCCACTAT+CGG | - | chr4_2:8399104-8399123 | Msa0586890:intron | 35.0% | |
| !! | GTTTGGTTTGTGGACATAAA+TGG | + | chr4_2:8399138-8399157 | None:intergenic | 35.0% |
| GCAATCATCACCTCATAAAT+TGG | - | chr4_2:8399240-8399259 | Msa0586890:intron | 35.0% | |
| TGTAGCTTAAGCAAAGTGAA+AGG | - | chr4_2:8399401-8399420 | Msa0586890:intron | 35.0% | |
| TGAAAAGAAATCATTGTCGG+GGG | - | chr4_2:8399439-8399458 | Msa0586890:intron | 35.0% | |
| ACTGATGTCGATCTTTCAAT+AGG | - | chr4_2:8399804-8399823 | Msa0586890:intron | 35.0% | |
| AAGTGATATTACTCTTCCAG+AGG | - | chr4_2:8400445-8400464 | Msa0586890:CDS | 35.0% | |
| ! | TACCATTTTGTTCCTCACAT+TGG | + | chr4_2:8400511-8400530 | None:intergenic | 35.0% |
| TATATGTACCTTGGCAACAA+TGG | + | chr4_2:8400627-8400646 | None:intergenic | 35.0% | |
| ATATCCATGATCAATGAGTG+AGG | - | chr4_2:8400848-8400867 | Msa0586890:five_prime_UTR | 35.0% | |
| TATCCATGATCAATGAGTGA+GGG | - | chr4_2:8400849-8400868 | Msa0586890:five_prime_UTR | 35.0% | |
| GGTTGTGAAGGTGAGTAATA+TGG | + | chr4_2:8396358-8396377 | None:intergenic | 40.0% | |
| AAACAAGAGAATGGTGGTTG+AGG | + | chr4_2:8396379-8396398 | None:intergenic | 40.0% | |
| ACGAACCTTCTTTAAGCCTA+TGG | + | chr4_2:8396842-8396861 | None:intergenic | 40.0% | |
| AAAGCCATATATCCTCGCAT+GGG | + | chr4_2:8397228-8397247 | None:intergenic | 40.0% | |
| GGGATGTAAATGGATATCCA+TGG | - | chr4_2:8397312-8397331 | Msa0586890:intron | 40.0% | |
| AATCACACTATCCACATCCA+TGG | + | chr4_2:8397332-8397351 | None:intergenic | 40.0% | |
| AACGGATATCTGCACGAATA+TGG | + | chr4_2:8397398-8397417 | None:intergenic | 40.0% | |
| ! | TCCATGGATTACCCACTAAA+CGG | + | chr4_2:8397416-8397435 | None:intergenic | 40.0% |
| ! | TGGGTAATCCATGGATTTTG+CGG | - | chr4_2:8397421-8397440 | Msa0586890:intron | 40.0% |
| ! | CATGGATTTTGCGGTATCAA+CGG | - | chr4_2:8397430-8397449 | Msa0586890:intron | 40.0% |
| ! | ATGGATTTTGCGGTATCAAC+GGG | - | chr4_2:8397431-8397450 | Msa0586890:intron | 40.0% |
| AAAAGGAAGTGAAAGTGGTC+GGG | + | chr4_2:8397703-8397722 | None:intergenic | 40.0% | |
| CTTAATGGTATATGCACCTG+CGG | + | chr4_2:8397828-8397847 | None:intergenic | 40.0% | |
| GGATACGGATGCAAACTTAA+TGG | + | chr4_2:8397843-8397862 | None:intergenic | 40.0% | |
| GATAAAATCCACCACGGATA+CGG | + | chr4_2:8397931-8397950 | None:intergenic | 40.0% | |
| TTTGCGGATAAAATCCACCA+CGG | + | chr4_2:8397937-8397956 | None:intergenic | 40.0% | |
| TCGATACCTTCAATTAGGGA+TGG | + | chr4_2:8397984-8398003 | None:intergenic | 40.0% | |
| TTCACAGAAACAATGAACGG+CGG | - | chr4_2:8398369-8398388 | Msa0586890:intron | 40.0% | |
| !! | CTTTTAGAAACAGGATGAGC+AGG | - | chr4_2:8398556-8398575 | Msa0586890:intron | 40.0% |
| !! | TGGCTGATTTTTATTGGGTG+TGG | - | chr4_2:8398613-8398632 | Msa0586890:intron | 40.0% |
| !! | GTGGTAAAAGAGAGTGTTAG+TGG | - | chr4_2:8398632-8398651 | Msa0586890:intron | 40.0% |
| ! | TCCAACCACGATTTCTAAGA+TGG | - | chr4_2:8398852-8398871 | Msa0586890:intron | 40.0% |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr4_2:8398856-8398875 | None:intergenic | 40.0% | |
| ATGGTATCAGAGTTGGGTTA+AGG | - | chr4_2:8398871-8398890 | Msa0586890:intron | 40.0% | |
| TCATCCAAAAGCTAGCTCAA+AGG | + | chr4_2:8399029-8399048 | None:intergenic | 40.0% | |
| AGAACCTCTTCAAGATCCAT+TGG | - | chr4_2:8399075-8399094 | Msa0586890:intron | 40.0% | |
| !! | GATAGTGGATACCTGATAGA+AGG | + | chr4_2:8399105-8399124 | None:intergenic | 40.0% |
| TCTATCAGGTATCCACTATC+GGG | - | chr4_2:8399105-8399124 | Msa0586890:intron | 40.0% | |
| GGTTTGTGGACATAAATGGT+GGG | + | chr4_2:8399134-8399153 | None:intergenic | 40.0% | |
| ! | TGGTTTGTGGACATAAATGG+TGG | + | chr4_2:8399135-8399154 | None:intergenic | 40.0% |
| GTGAGTTAAGAGTCCTACAT+CGG | - | chr4_2:8399181-8399200 | Msa0586890:intron | 40.0% | |
| ! | CTTGAATTCAAGTCTTGTCG+CGG | + | chr4_2:8399843-8399862 | None:intergenic | 40.0% |
| ! | TTTTTCTCCTTCGTTCATCG+AGG | + | chr4_2:8400043-8400062 | None:intergenic | 40.0% |
| GTCCAATGTGAGGAACAAAA+TGG | - | chr4_2:8400506-8400525 | Msa0586890:intron | 40.0% | |
| !! | GGTTGGTTAGTATTTTGAGC+AGG | + | chr4_2:8400535-8400554 | None:intergenic | 40.0% |
| ATCCATGATCAATGAGTGAG+GGG | - | chr4_2:8400850-8400869 | Msa0586890:five_prime_UTR | 40.0% | |
| AATGGTGGTTGAGGTTGTGA+AGG | + | chr4_2:8396370-8396389 | None:intergenic | 45.0% | |
| GTACAGTGTGGATAAGAGGT+GGG | + | chr4_2:8396465-8396484 | None:intergenic | 45.0% | |
| AGTACAGTGTGGATAAGAGG+TGG | + | chr4_2:8396466-8396485 | None:intergenic | 45.0% | |
| AGACGCCATAGGCTTAAAGA+AGG | - | chr4_2:8396834-8396853 | Msa0586890:CDS | 45.0% | |
| GATAATAGATACCCCATGCG+AGG | - | chr4_2:8397213-8397232 | Msa0586890:intron | 45.0% | |
| ATACCCCATGCGAGGATATA+TGG | - | chr4_2:8397221-8397240 | Msa0586890:intron | 45.0% | |
| AAGCCATATATCCTCGCATG+GGG | + | chr4_2:8397227-8397246 | None:intergenic | 45.0% | |
| GAAAGCCATATATCCTCGCA+TGG | + | chr4_2:8397229-8397248 | None:intergenic | 45.0% | |
| ! | GATTTTCGTGTATGCTCCGT+TGG | - | chr4_2:8397348-8397367 | Msa0586890:intron | 45.0% |
| TCGTGCAGATATCCGTTTAG+TGG | - | chr4_2:8397401-8397420 | Msa0586890:intron | 45.0% | |
| CGTGCAGATATCCGTTTAGT+GGG | - | chr4_2:8397402-8397421 | Msa0586890:intron | 45.0% | |
| ! | TCCGTTTAGTGGGTAATCCA+TGG | - | chr4_2:8397412-8397431 | Msa0586890:intron | 45.0% |
| CGTTGATACCGCAAAATCCA+TGG | + | chr4_2:8397432-8397451 | None:intergenic | 45.0% | |
| CCATACCCGCTATTTAATCG+AGG | + | chr4_2:8397801-8397820 | None:intergenic | 45.0% | |
| !! | CCTCGATTAAATAGCGGGTA+TGG | - | chr4_2:8397798-8397817 | Msa0586890:intron | 45.0% |
| GAGACCTGAATGGATATCCA+TGG | + | chr4_2:8397904-8397923 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTGGGATTGTGTT+AGG | - | chr4_2:8398829-8398848 | Msa0586890:intron | 45.0% |
| TTGGGTTAAGGTTTGCGTTG+TGG | - | chr4_2:8398883-8398902 | Msa0586890:intron | 45.0% | |
| TGGGTTAAGGTTTGCGTTGT+GGG | - | chr4_2:8398884-8398903 | Msa0586890:intron | 45.0% | |
| TTGTTTGTCTCACATCCCAC+AGG | - | chr4_2:8398960-8398979 | Msa0586890:intron | 45.0% | |
| TGGTCCAATGGATCTTGAAG+AGG | + | chr4_2:8399082-8399101 | None:intergenic | 45.0% | |
| AGTGGATACCTGATAGAAGG+TGG | + | chr4_2:8399102-8399121 | None:intergenic | 45.0% | |
| ! | TTGTGGACATAAATGGTGGG+CGG | + | chr4_2:8399131-8399150 | None:intergenic | 45.0% |
| GTCCTACATCGGATAGATCA+TGG | - | chr4_2:8399192-8399211 | Msa0586890:intron | 45.0% | |
| GACCATGATCTATCCGATGT+AGG | + | chr4_2:8399197-8399216 | None:intergenic | 45.0% | |
| ! | CGTGGGTATTTTCGTGACTT+AGG | + | chr4_2:8399733-8399752 | None:intergenic | 45.0% |
| AACGTTGACGCCCAAATCAT+TGG | - | chr4_2:8399766-8399785 | Msa0586890:intron | 45.0% | |
| GTGTAGTTAGTCGTCTTGTG+TGG | + | chr4_2:8399868-8399887 | None:intergenic | 45.0% | |
| GTGATTTCGTCGTCTAAGTG+CGG | + | chr4_2:8399895-8399914 | None:intergenic | 45.0% | |
| AGAGAGCTAGAACAAGAAGC+TGG | - | chr4_2:8400365-8400384 | Msa0586890:CDS | 45.0% | |
| AACACTCTTGCTTTGACCTC+TGG | + | chr4_2:8400464-8400483 | None:intergenic | 45.0% | |
| ACTCGTCATAGTCCAATGTG+AGG | - | chr4_2:8400496-8400515 | Msa0586890:CDS | 45.0% | |
| ! | AACAATGGTGATGTCAAGGG+TGG | + | chr4_2:8400612-8400631 | None:intergenic | 45.0% |
| ! | GGCAACAATGGTGATGTCAA+GGG | + | chr4_2:8400615-8400634 | None:intergenic | 45.0% |
| ! | TGGCAACAATGGTGATGTCA+AGG | + | chr4_2:8400616-8400635 | None:intergenic | 45.0% |
| TGACATCACCATTGTTGCCA+AGG | - | chr4_2:8400616-8400635 | Msa0586890:intron | 45.0% | |
| TACCCCTCACTCATTGATCA+TGG | + | chr4_2:8400855-8400874 | None:intergenic | 45.0% | |
| !!! | TATTATTTTTTAAATAAAGT+AGG | - | chr4_2:8397157-8397176 | Msa0586890:intron | 5.0% |
| !!! | ATTATTTTTTAAATAAAGTA+GGG | - | chr4_2:8397158-8397177 | Msa0586890:intron | 5.0% |
| !!! | CTTTATTTTTATTAAATATA+AGG | + | chr4_2:8397608-8397627 | None:intergenic | 5.0% |
| !!! | TTTGATTTTTTTTTTTTTTT+TGG | - | chr4_2:8398169-8398188 | Msa0586890:intron | 5.0% |
| !!! | TTCATATAATATATTTTTAA+GGG | - | chr4_2:8400662-8400681 | Msa0586890:five_prime_UTR | 5.0% |
| !! | ATAATAATATATATTCTATT+TGG | - | chr4_2:8400694-8400713 | Msa0586890:five_prime_UTR | 5.0% |
| ! | GTGTGGATAAGAGGTGGGTT+GGG | + | chr4_2:8396460-8396479 | None:intergenic | 50.0% |
| AGTGTGGATAAGAGGTGGGT+TGG | + | chr4_2:8396461-8396480 | None:intergenic | 50.0% | |
| TGGAGGAGTCGGGAGAAAAT+TGG | - | chr4_2:8396540-8396559 | Msa0586890:CDS | 50.0% | |
| GGAGATCACAGAGATGTTGC+AGG | - | chr4_2:8396804-8396823 | Msa0586890:CDS | 50.0% | |
| CAGGAACTTTCAGACGCCAT+AGG | - | chr4_2:8396823-8396842 | Msa0586890:CDS | 50.0% | |
| ATACGGAGTGGAGACCTGAA+TGG | + | chr4_2:8397914-8397933 | None:intergenic | 50.0% | |
| !! | AGAGAGAGAGCACTGCATCT+AGG | + | chr4_2:8398338-8398357 | None:intergenic | 50.0% |
| ACAGAAACAATGAACGGCGG+TGG | - | chr4_2:8398372-8398391 | Msa0586890:intron | 50.0% | |
| GGGTTAAGGTTTGCGTTGTG+GGG | - | chr4_2:8398885-8398904 | Msa0586890:intron | 50.0% | |
| TCTCACATCCCACAGGTTTC+CGG | - | chr4_2:8398967-8398986 | Msa0586890:intron | 50.0% | |
| CCTGATAGAAGGTGGTCCAA+TGG | + | chr4_2:8399094-8399113 | None:intergenic | 50.0% | |
| CCATTGGACCACCTTCTATC+AGG | - | chr4_2:8399091-8399110 | Msa0586890:intron | 50.0% | |
| !! | GCACTATCGGGTTTGGTTTG+TGG | + | chr4_2:8399148-8399167 | None:intergenic | 50.0% |
| CAAACCAAACCCGATAGTGC+TGG | - | chr4_2:8399148-8399167 | Msa0586890:intron | 50.0% | |
| AATCATTGTCGGGGGTCAGT+TGG | - | chr4_2:8399447-8399466 | Msa0586890:intron | 50.0% | |
| ! | CATCGAGGAGGGGTAGTTTT+AGG | + | chr4_2:8400028-8400047 | None:intergenic | 50.0% |
| TCTCCTTCGTTCATCGAGGA+GGG | + | chr4_2:8400039-8400058 | None:intergenic | 50.0% | |
| TTCTCCTTCGTTCATCGAGG+AGG | + | chr4_2:8400040-8400059 | None:intergenic | 50.0% | |
| ! | TAGCGGGTATGGATATCCGC+AGG | - | chr4_2:8397809-8397828 | Msa0586890:intron | 55.0% |
| AATCCACCACGGATACGGAG+TGG | + | chr4_2:8397926-8397945 | None:intergenic | 55.0% | |
| GAAACAATGAACGGCGGTGG+TGG | - | chr4_2:8398375-8398394 | Msa0586890:intron | 55.0% | |
| GGTTTGCGTTGTGGGGATTC+AGG | - | chr4_2:8398892-8398911 | Msa0586890:intron | 55.0% | |
| CTCACATCCCACAGGTTTCC+GGG | - | chr4_2:8398968-8398987 | Msa0586890:intron | 55.0% | |
| TCAACAGCCCGGAAACCTGT+GGG | + | chr4_2:8398978-8398997 | None:intergenic | 55.0% | |
| ACGACCAGCACTATCGGGTT+TGG | + | chr4_2:8399155-8399174 | None:intergenic | 55.0% | |
| CCTTCACGACCAGCACTATC+GGG | + | chr4_2:8399160-8399179 | None:intergenic | 55.0% | |
| CCCTTCACGACCAGCACTAT+CGG | + | chr4_2:8399161-8399180 | None:intergenic | 55.0% | |
| !! | CCGATAGTGCTGGTCGTGAA+GGG | - | chr4_2:8399158-8399177 | Msa0586890:intron | 55.0% |
| !! | CGATAGTGCTGGTCGTGAAG+GGG | - | chr4_2:8399159-8399178 | Msa0586890:intron | 55.0% |
| CGTTGCAGATCTGTGAGCGT+GGG | + | chr4_2:8399750-8399769 | None:intergenic | 55.0% | |
| ACGTTGCAGATCTGTGAGCG+TGG | + | chr4_2:8399751-8399770 | None:intergenic | 55.0% | |
| TACCCCTCCTCGATGAACGA+AGG | - | chr4_2:8400033-8400052 | Msa0586890:intron | 55.0% | |
| CTCCTTCGTTCATCGAGGAG+GGG | + | chr4_2:8400038-8400057 | None:intergenic | 55.0% | |
| AGGTCTCCACTCCGTATCCG+TGG | - | chr4_2:8397917-8397936 | Msa0586890:intron | 60.0% | |
| TCTCCACTCCGTATCCGTGG+TGG | - | chr4_2:8397920-8397939 | Msa0586890:intron | 60.0% | |
| ! | ACAATGAACGGCGGTGGTGG+CGG | - | chr4_2:8398378-8398397 | Msa0586890:intron | 60.0% |
| CTCAACAGCCCGGAAACCTG+TGG | + | chr4_2:8398979-8398998 | None:intergenic | 60.0% | |
| !! | CCCGATAGTGCTGGTCGTGA+AGG | - | chr4_2:8399157-8399176 | Msa0586890:intron | 60.0% |
| ! | CAATGAACGGCGGTGGTGGC+GGG | - | chr4_2:8398379-8398398 | Msa0586890:intron | 65.0% |
| TGGGGATTCAGGCCCACGCT+AGG | - | chr4_2:8398903-8398922 | Msa0586890:intron | 65.0% | |
| TCAGGCCCACGCTAGGCATG+AGG | - | chr4_2:8398910-8398929 | Msa0586890:intron | 65.0% | |
| CAGGCCCACGCTAGGCATGA+GGG | - | chr4_2:8398911-8398930 | Msa0586890:intron | 65.0% | |
| CCCACCCTCATGCCTAGCGT+GGG | + | chr4_2:8398918-8398937 | None:intergenic | 65.0% | |
| CCCACGCTAGGCATGAGGGT+GGG | - | chr4_2:8398915-8398934 | Msa0586890:intron | 65.0% | |
| ACCCACCCTCATGCCTAGCG+TGG | + | chr4_2:8398919-8398938 | None:intergenic | 65.0% | |
| !! | AATGGTGGGCGGCCCGATAG+TGG | + | chr4_2:8399120-8399139 | None:intergenic | 65.0% |
| GCCCACGCTAGGCATGAGGG+TGG | - | chr4_2:8398914-8398933 | Msa0586890:intron | 70.0% | |
| !! | CGGCGGTGGTGGCGGGATCT+AGG | - | chr4_2:8398386-8398405 | Msa0586890:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8396324 | 8400874 | 8396324 | ID=Msa0586890;Name=Msa0586890 |
| chr4_2 | mRNA | 8396324 | 8400874 | 8396324 | ID=Msa0586890-mRNA-1;Parent=Msa0586890;Name=Msa0586890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=215|1|1|1|1|1|3|204|195 |
| chr4_2 | exon | 8396324 | 8396896 | 8396324 | ID=Msa0586890-mRNA-1:exon:2255;Parent=Msa0586890-mRNA-1 |
| chr4_2 | exon | 8400343 | 8400519 | 8400343 | ID=Msa0586890-mRNA-1:exon:2254;Parent=Msa0586890-mRNA-1 |
| chr4_2 | exon | 8400618 | 8400874 | 8400618 | ID=Msa0586890-mRNA-1:exon:2253;Parent=Msa0586890-mRNA-1 |
| chr4_2 | five_prime_UTR | 8400660 | 8400874 | 8400660 | ID=Msa0586890-mRNA-1:five_prime_utr;Parent=Msa0586890-mRNA-1 |
| chr4_2 | CDS | 8400618 | 8400659 | 8400618 | ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1 |
| chr4_2 | CDS | 8400343 | 8400519 | 8400343 | ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1 |
| chr4_2 | CDS | 8396528 | 8396896 | 8396528 | ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1 |
| chr4_2 | three_prime_UTR | 8396324 | 8396527 | 8396324 | ID=Msa0586890-mRNA-1:three_prime_utr;Parent=Msa0586890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
