AlfalfaGEDB | Msa0586890

M. sativa cultivar zhongmu-4 / Msa0586890

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586890	KEH28665.1	84.211	190	18	3	1	189	1	179	1.43e-102	304

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586890	sp\|Q9T072\|BH025_ARATH	39.161	143	72	5	57	185	163	304	1.08e-18	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028410	Msa0586890	0.812884	3.385800e-51	-8.615850e-47
Msa0050360	Msa0586890	0.828363	9.371936e-55	-8.615850e-47
Msa0050400	Msa0586890	0.832313	1.014871e-55	-8.615850e-47
Msa0065190	Msa0586890	0.800040	1.736837e-48	-8.615850e-47
Msa0092750	Msa0586890	0.832745	7.933846e-56	-8.615850e-47
Msa0093530	Msa0586890	-0.803411	3.530878e-49	-8.615850e-47
Msa0094420	Msa0586890	0.812295	4.555253e-51	-8.615850e-47
Msa0124070	Msa0586890	0.818877	1.558503e-52	-8.615850e-47
Msa0126960	Msa0586890	-0.803803	2.928341e-49	-8.615850e-47
Msa0156780	Msa0586890	0.841871	3.652051e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586890	MtrunA17_Chr4g0002851	83.422	187	19	3	1	186	1	176	9.26e-104	296
Msa0586890	MtrunA17_Chr7g0233441	80.214	187	25	3	1	186	1	176	9.17e-98	281
Msa0586890	MtrunA17_Chr4g0002831	70.256	195	50	5	1	192	1	190	1.07e-85	251
Msa0586890	MtrunA17_Chr2g0333621	46.207	145	61	4	57	186	149	291	1.28e-25	100
Msa0586890	MtrunA17_Chr4g0002801	35.751	193	93	4	12	186	131	310	1.42e-23	95.5
Msa0586890	MtrunA17_Chr4g0002781	35.912	181	86	5	22	186	163	329	2.20e-23	95.1
Msa0586890	MtrunA17_Chr5g0400621	43.284	134	65	2	70	192	182	315	4.23e-21	89.0
Msa0586890	MtrunA17_Chr5g0400641	38.686	137	73	2	70	195	23	159	8.80e-21	84.3
Msa0586890	MtrunA17_Chr2g0333611	38.095	147	81	3	50	186	49	195	9.83e-21	85.9
Msa0586890	MtrunA17_Chr5g0400661	40.000	140	60	4	71	186	175	314	3.13e-19	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586890	AT4G37850.2	39.161	143	72	5	57	185	163	304	1.09e-19	85.1
Msa0586890	AT4G37850.1	39.161	143	72	5	57	185	163	304	1.09e-19	85.1
Msa0586890	AT2G22760.2	36.232	138	74	3	70	193	144	281	5.32e-17	77.4
Msa0586890	AT2G22760.1	35.115	131	71	3	70	186	144	274	8.95e-16	73.9
Msa0586890	AT2G22770.1	33.544	158	78	3	56	186	142	299	8.03e-14	68.9

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Find 54 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGAATGGTGGTTG+AGG	0.500954	4_2:+8400800	None:intergenic
AAATGCTATTTAATGAATTA+TGG	0.190163	4_2:-8396412	Msa0586890:three_prime_UTR
AACAAAATTAATGGAGGAGT+CGG	0.509366	4_2:-8400647	Msa0586890:exon
AACAATGGTGATGTCAAGGG+TGG	0.697013	4_2:+8396567	None:intergenic
AACACTCTTGCTTTGACCTC+TGG	0.412988	4_2:+8396715	None:intergenic
AACAGTAGAGTCTTGAATTT+TGG	0.151614	4_2:-8396595	Msa0586890:CDS
AAGAATGATAAAGTACAGTG+TGG	0.634617	4_2:+8400702	None:intergenic
AAGTGATATTACTCTTCCAG+AGG	0.685126	4_2:-8396731	Msa0586890:CDS
AATGGTGGTTGAGGTTGTGA+AGG	0.616577	4_2:+8400809	None:intergenic
ACAAAATTAATGGAGGAGTC+GGG	0.571828	4_2:-8400646	Msa0586890:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTGTTATATAATATAGGG+GGG	+	chr4_2:8396439-8396458	None:intergenic	30.0%
GGGTTGTTATATAATATAGG+GGG	+	chr4_2:8396440-8396459	None:intergenic	30.0%
AAGAATGATAAAGTACAGTG+TGG	+	chr4_2:8396477-8396496	None:intergenic	30.0%
TCTTGGAACAAAATTAATGG+AGG	-	chr4_2:8396523-8396542	Msa0586890:exon	30.0%
AACAAAATTAATGGAGGAGT+CGG	-	chr4_2:8396529-8396548	Msa0586890:CDS	30.0%
TACAAAGGAAAACAATGAGA+AGG	-	chr4_2:8396783-8396802	Msa0586890:CDS	30.0%
AGTGACTTAAGATTGAAGAT+AGG	-	chr4_2:8397291-8397310	Msa0586890:intron	30.0%
GTGACTTAAGATTGAAGATA+GGG	-	chr4_2:8397292-8397311	Msa0586890:intron	30.0%
ATTGAAGATAGGGATGTAAA+TGG	-	chr4_2:8397302-8397321	Msa0586890:intron	30.0%
TGTTATTACGCTCCTTTAAA+AGG	+	chr4_2:8397720-8397739	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	8396324	8400874	8396324	ID=Msa0586890;Name=Msa0586890
chr4_2	mRNA	8396324	8400874	8396324	ID=Msa0586890-mRNA-1;Parent=Msa0586890;Name=Msa0586890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=215\|1\|1\|1\|1\|1\|3\|204\|195
chr4_2	exon	8396324	8396896	8396324	ID=Msa0586890-mRNA-1:exon:2255;Parent=Msa0586890-mRNA-1
chr4_2	exon	8400343	8400519	8400343	ID=Msa0586890-mRNA-1:exon:2254;Parent=Msa0586890-mRNA-1
chr4_2	exon	8400618	8400874	8400618	ID=Msa0586890-mRNA-1:exon:2253;Parent=Msa0586890-mRNA-1
chr4_2	five_prime_UTR	8400660	8400874	8400660	ID=Msa0586890-mRNA-1:five_prime_utr;Parent=Msa0586890-mRNA-1
chr4_2	CDS	8400618	8400659	8400618	ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1
chr4_2	CDS	8400343	8400519	8400343	ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1
chr4_2	CDS	8396528	8396896	8396528	ID=Msa0586890-mRNA-1:cds;Parent=Msa0586890-mRNA-1
chr4_2	three_prime_UTR	8396324	8396527	8396324	ID=Msa0586890-mRNA-1:three_prime_utr;Parent=Msa0586890-mRNA-1

Gene Sequence

>Msa0586890

ATGGAGGAGTCGGGAGAAAATTGGCCTTCTAATTCTGATTTGGAAATAAGTGATGAAGCCATTCTTAAAGATGGAGAATCTGAATCTGTATGTGATGATGATGAGGATCATTATTTTGAAGATCAGGTTGGAGATCCCACAGATAATACAAAGGAAAACAATGAGAAGGAGATCACAGAGATGTTGCAGGAACTTTCAGACGCCATAGGCTTAAAGAAGCTGGACGAAATTTCGATCATAGAGAAAGCTAGAGACTATGTAGCAACACTTCAAGAACGTGTGAGAGAGCTAGAACAAGAAGCTGGATTCAACATTTGTAACGAAAGGACCAAACTGAGTTCAAATTACTACAATTGTGGAACAAGTGATATTACTCTTCCAGAGGTCAAAGCAAGAGTGTTACAAAAAGTTGTACTCGTCATAGTCCAATGTGAGGAACAAAATGGTATCCTGCTCAAAATACTAACCAACCTTGAAAATCTTCATCTTTCAGTAGTTAACAGTAGAGTCTTGAATTTTGGAAAATCCACCCTTGACATCACCATTGTTGCCAAGGTACATATACAAGTCAATATATACTTCATATAA

Protein sequence

>Msa0586890

MEESGENWPSNSDLEISDEAILKDGESESVCDDDEDHYFEDQVGDPTDNTKENNEKEITEMLQELSDAIGLKKLDEISIIEKARDYVATLQERVRELEQEAGFNICNERTKLSSNYYNCGTSDITLPEVKARVLQKVVLVIVQCEEQNGILLKILTNLENLHLSVVNSRVLNFGKSTLDITIVAKVHIQVNIYFI*