AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413880 MtrunA17_Chr4g0059971 97.990 597 12 0 1 597 1 597 0.0 1207
Msa1413880 MtrunA17_Chr4g0059991 69.069 569 174 2 18 584 5 573 0.0 852
Msa1413880 MtrunA17_Chr4g0059981 68.213 582 183 2 10 590 7 587 0.0 840
Msa1413880 MtrunA17_Chr5g0415791 48.527 577 275 8 14 584 17 577 0.0 552
Msa1413880 MtrunA17_Chr8g0362781 40.901 577 326 7 17 584 11 581 1.50e-157 464
Msa1413880 MtrunA17_Chr8g0362801 46.908 469 235 6 122 584 1 461 7.67e-150 440
Msa1413880 MtrunA17_Chr4g0060001 40.876 548 307 7 39 581 34 569 2.41e-147 438
Msa1413880 MtrunA17_Chr8g0390331 39.071 581 338 8 18 596 2 568 3.53e-140 419
Msa1413880 MtrunA17_Chr7g0255621 37.847 576 341 9 15 584 1 565 7.95e-138 414
Msa1413880 MtrunA17_Chr7g0240281 39.184 564 323 7 39 593 29 581 1.66e-134 405
Msa1413880 MtrunA17_Chr7g0255601 38.462 585 330 14 15 584 3 572 4.93e-134 404
Msa1413880 MtrunA17_Chr7g0240271 36.888 572 338 8 16 579 9 565 1.18e-133 403
Msa1413880 MtrunA17_Chr5g0422881 36.678 578 345 7 10 585 7 565 3.91e-133 401
Msa1413880 MtrunA17_Chr2g0331511 37.435 577 336 8 15 581 1 562 6.69e-131 397
Msa1413880 MtrunA17_Chr7g0241741 37.500 552 332 7 40 590 28 567 1.20e-130 394
Msa1413880 MtrunA17_Chr3g0104011 35.945 587 351 7 7 589 3 568 2.17e-130 394
Msa1413880 MtrunA17_Chr4g0005901 36.007 586 338 9 6 585 18 572 2.44e-129 391
Msa1413880 MtrunA17_Chr8g0375311 36.380 547 338 5 40 585 46 583 1.15e-128 390
Msa1413880 MtrunA17_Chr8g0375291 36.189 572 345 7 16 576 12 574 1.54e-128 389
Msa1413880 MtrunA17_Chr4g0003761 36.097 579 357 10 18 593 13 581 1.84e-128 390
Msa1413880 MtrunA17_Chr2g0331521 37.943 564 320 10 30 581 18 563 7.45e-128 388
Msa1413880 MtrunA17_Chr8g0375351 35.800 581 359 8 5 582 11 580 1.66e-126 384
Msa1413880 MtrunA17_Chr1g0147631 38.504 548 319 9 39 581 30 564 2.29e-126 384
Msa1413880 MtrunA17_Chr1g0157601 36.283 565 346 8 18 581 2 553 3.96e-126 382
Msa1413880 MtrunA17_Chr7g0255611 34.524 588 362 10 3 584 4 574 6.27e-124 378
Msa1413880 MtrunA17_Chr8g0375321 35.478 575 347 8 16 582 19 577 3.18e-123 375
Msa1413880 MtrunA17_Chr8g0375341 34.412 587 365 6 5 585 11 583 3.21e-122 373
Msa1413880 MtrunA17_Chr3g0142091 36.116 551 331 5 39 587 31 562 1.91e-121 371
Msa1413880 MtrunA17_Chr2g0331481 37.168 565 343 8 20 581 11 566 5.29e-120 369
Msa1413880 MtrunA17_Chr5g0415841 39.440 464 269 8 125 584 4 459 6.48e-119 360
Msa1413880 MtrunA17_Chr1g0157611 36.572 566 342 9 21 581 1 554 7.11e-119 364
Msa1413880 MtrunA17_Chr8g0375331 35.456 581 351 8 13 585 3 567 1.04e-118 363
Msa1413880 MtrunA17_Chr2g0331471 36.898 561 342 8 24 581 78 629 2.16e-118 367
Msa1413880 MtrunA17_Chr2g0331461 38.053 565 338 8 20 581 11 566 4.53e-118 364
Msa1413880 MtrunA17_Chr8g0375361 36.364 550 334 8 40 585 45 582 1.87e-117 361
Msa1413880 MtrunA17_Chr3g0142101 33.910 578 352 11 17 585 11 567 1.59e-115 356
Msa1413880 MtrunA17_Chr1g0177591 35.052 582 346 12 3 581 12 564 1.13e-113 350
Msa1413880 MtrunA17_Chr5g0399061 35.209 551 344 7 39 585 32 573 1.43e-112 348
Msa1413880 MtrunA17_Chr1g0157621 36.243 527 326 6 55 581 1 517 5.45e-112 346
Msa1413880 MtrunA17_Chr4g0008651 33.504 585 356 10 18 585 2 570 3.75e-110 342
Msa1413880 MtrunA17_Chr7g0261811 32.712 590 366 10 14 590 2 573 7.58e-109 339
Msa1413880 MtrunA17_Chr5g0400371 32.765 586 378 9 3 582 81 656 3.00e-108 340
Msa1413880 MtrunA17_Chr7g0240181 37.365 463 270 7 125 579 4 454 7.80e-107 330
Msa1413880 MtrunA17_Chr7g0240211 37.365 463 270 7 125 579 4 454 9.26e-107 330
Msa1413880 MtrunA17_Chr7g0235521 37.365 463 270 7 125 579 4 454 1.74e-106 329
Msa1413880 MtrunA17_Chr7g0261771 33.393 560 353 8 40 594 37 581 5.77e-106 332
Msa1413880 MtrunA17_Chr3g0112671 33.276 586 360 10 3 584 2 560 1.02e-105 330
Msa1413880 MtrunA17_Chr7g0240131 37.149 463 271 7 125 579 4 454 3.29e-105 326
Msa1413880 MtrunA17_Chr3g0112611 34.549 576 348 9 25 584 7 569 8.03e-105 328
Msa1413880 MtrunA17_Chr5g0439381 33.913 575 342 7 23 584 7 556 1.11e-104 328
Msa1413880 MtrunA17_Chr5g0399071 33.152 552 354 6 39 585 30 571 2.81e-104 327
Msa1413880 MtrunA17_Chr7g0240381 32.594 586 351 10 15 584 1 558 1.96e-103 324
Msa1413880 MtrunA17_Chr7g0261881 31.818 594 366 11 14 590 2 573 2.71e-102 322
Msa1413880 MtrunA17_Chr4g0014841 34.854 548 323 10 40 585 35 550 4.27e-102 320
Msa1413880 MtrunA17_Chr3g0114501 34.120 551 348 9 40 588 28 565 5.41e-101 318
Msa1413880 MtrunA17_Chr3g0077151 33.696 552 321 10 39 585 33 544 1.79e-100 315
Msa1413880 MtrunA17_Chr4g0014801 34.458 563 333 10 28 585 21 552 3.08e-100 315
Msa1413880 MtrunA17_Chr4g0014781 35.584 548 321 10 40 585 35 552 7.00e-100 314
Msa1413880 MtrunA17_Chr1g0213711 32.865 569 362 7 17 582 4 555 9.68e-100 315
Msa1413880 MtrunA17_Chr4g0056431 34.483 551 351 6 39 585 30 574 1.20e-99 315
Msa1413880 MtrunA17_Chr1g0166791 32.762 583 366 11 18 590 4 570 2.42e-99 314
Msa1413880 MtrunA17_Chr4g0063591 35.986 553 331 11 39 586 27 561 6.69e-99 312
Msa1413880 MtrunA17_Chr7g0214731 34.215 567 332 13 39 584 66 612 1.44e-98 313
Msa1413880 MtrunA17_Chr4g0014791 36.066 549 315 11 40 585 35 550 1.76e-98 311
Msa1413880 MtrunA17_Chr7g0240151 36.069 463 258 8 125 579 4 436 1.04e-97 306
Msa1413880 MtrunA17_Chr7g0214461 30.623 578 384 6 21 596 63 625 2.86e-97 310
Msa1413880 MtrunA17_Chr7g0217461 32.143 560 371 6 28 583 16 570 1.91e-96 306
Msa1413880 MtrunA17_Chr1g0187241 32.101 595 369 10 7 590 2 572 1.93e-96 306
Msa1413880 MtrunA17_Chr4g0014871 34.608 549 326 11 40 585 36 554 9.61e-96 304
Msa1413880 MtrunA17_Chr2g0326211 34.828 580 333 10 18 585 2 548 1.43e-95 303
Msa1413880 MtrunA17_Chr4g0054891 31.193 545 362 4 40 582 116 649 3.20e-95 305
Msa1413880 MtrunA17_Chr7g0261851 32.428 552 351 7 40 585 34 569 3.51e-95 303
Msa1413880 MtrunA17_Chr1g0193391 33.155 561 347 10 39 595 22 558 6.43e-94 300
Msa1413880 MtrunA17_Chr8g0353031 33.514 555 335 8 39 585 23 551 1.00e-93 299
Msa1413880 MtrunA17_Chr1g0166711 33.153 555 352 8 40 590 31 570 2.28e-93 298
Msa1413880 MtrunA17_Chr1g0177611 36.937 444 258 9 141 581 11 435 2.75e-93 293
Msa1413880 MtrunA17_Chr7g0218851 30.986 568 362 10 25 582 35 582 4.45e-93 298
Msa1413880 MtrunA17_Chr7g0261791 29.863 586 384 8 12 585 1 571 2.96e-92 296
Msa1413880 MtrunA17_Chr2g0325951 33.161 579 344 12 18 585 2 548 3.57e-92 294
Msa1413880 MtrunA17_Chr1g0177631 37.698 443 256 8 141 581 11 435 2.35e-91 288
Msa1413880 MtrunA17_Chr7g0271221 32.639 576 359 9 20 591 3 553 1.95e-90 290
Msa1413880 MtrunA17_Chr2g0276751 31.729 561 346 11 37 591 41 570 7.31e-89 286
Msa1413880 MtrunA17_Chr3g0133341 31.570 567 348 8 32 584 10 550 1.37e-87 283
Msa1413880 MtrunA17_Chr2g0325961 32.874 581 344 15 18 585 2 549 1.53e-87 282
Msa1413880 MtrunA17_Chr1g0166741 32.200 559 348 8 39 590 32 566 2.21e-87 282
Msa1413880 MtrunA17_Chr4g0069581 33.395 539 334 7 53 588 5 521 2.00e-85 277
Msa1413880 MtrunA17_Chr2g0284701 31.353 606 394 11 5 596 2 599 4.59e-85 277
Msa1413880 MtrunA17_Chr4g0014861 36.404 445 262 9 143 585 4 429 8.56e-85 271
Msa1413880 MtrunA17_Chr7g0261661 32.632 475 292 10 125 590 4 459 2.32e-84 272
Msa1413880 MtrunA17_Chr3g0082631 35.862 435 254 6 164 585 38 460 1.23e-83 269
Msa1413880 MtrunA17_Chr1g0166771 31.274 518 329 8 52 564 9 504 2.30e-83 271
Msa1413880 MtrunA17_Chr4g0011471 29.795 537 364 5 49 582 31 557 1.47e-82 270
Msa1413880 MtrunA17_Chr8g0379971 32.812 576 352 10 37 584 23 591 1.68e-82 270
Msa1413880 MtrunA17_Chr1g0166731 34.534 472 294 7 121 590 9 467 2.65e-82 266
Msa1413880 MtrunA17_Chr8g0362711 29.636 550 380 5 37 584 27 571 2.13e-81 266
Msa1413880 MtrunA17_Chr5g0415961 29.505 566 361 12 37 584 27 572 6.76e-76 252
Msa1413880 MtrunA17_Chr8g0379991 30.175 570 352 10 55 584 1 564 5.06e-72 242
Msa1413880 MtrunA17_Chr4g0011041 25.342 584 419 8 7 582 5 579 6.18e-67 228
Msa1413880 MtrunA17_Chr6g0451841 28.440 545 339 13 53 581 24 533 4.05e-66 225
Msa1413880 MtrunA17_Chr7g0261751 30.110 455 271 8 40 456 37 482 1.62e-65 223
Msa1413880 MtrunA17_Chr3g0112631 34.532 278 174 5 307 584 3 272 1.03e-56 192
Msa1413880 MtrunA17_Chr3g0142121 36.957 276 155 6 310 585 13 269 1.87e-54 186
Msa1413880 MtrunA17_Chr7g0261731 30.312 353 222 5 12 351 1 342 6.57e-54 187
Msa1413880 MtrunA17_Chr3g0142111 32.278 316 202 6 16 322 21 333 2.02e-51 180
Msa1413880 MtrunA17_Chr4g0060071 32.441 299 171 5 294 584 23 298 3.14e-46 165
Msa1413880 MtrunA17_Chr1g0147591 42.786 201 103 5 161 356 7 200 1.72e-44 157
Msa1413880 MtrunA17_Chr7g0234181 27.556 450 279 10 133 581 10 413 1.99e-40 152
Msa1413880 MtrunA17_Chr7g0234381 27.706 462 287 11 121 581 3 418 1.63e-38 147
Msa1413880 MtrunA17_Chr7g0261721 36.019 211 132 3 384 594 4 211 2.24e-38 141
Msa1413880 MtrunA17_Chr7g0234151 27.489 462 288 10 121 581 3 418 1.18e-37 144
Msa1413880 MtrunA17_Chr2g0326221 32.051 234 126 4 352 585 24 224 7.69e-30 117
Msa1413880 MtrunA17_Chr3g0112651 35.714 140 90 0 142 281 38 177 8.97e-25 102
Msa1413880 MtrunA17_Chr8g0362791 53.012 83 39 0 38 120 40 122 1.20e-22 94.4
Msa1413880 MtrunA17_Chr7g0261831 32.515 163 96 4 265 424 3 154 1.85e-19 87.4
Msa1413880 MtrunA17_Chr4g0060061 33.058 121 81 0 146 266 8 128 3.97e-19 84.0
Msa1413880 MtrunA17_Chr8g0382591 36.975 119 71 4 307 423 3 119 4.41e-18 81.3
Msa1413880 MtrunA17_Chr7g0240221 42.683 82 47 0 39 120 32 113 3.19e-17 78.2
Msa1413880 MtrunA17_Chr7g0240191 42.683 82 47 0 39 120 32 113 3.19e-17 78.2
Msa1413880 MtrunA17_Chr7g0240161 42.683 82 47 0 39 120 32 113 3.19e-17 78.2
Msa1413880 MtrunA17_Chr7g0240141 42.683 82 47 0 39 120 32 113 4.39e-17 77.8
Msa1413880 MtrunA17_Chr7g0235511 42.857 84 46 1 39 120 32 115 9.48e-16 73.9
Msa1413880 MtrunA17_Chr1g0147581 32.174 115 70 2 444 558 10 116 2.33e-14 69.7
Msa1413880 MtrunA17_Chr5g0415851 45.333 75 38 1 48 122 6 77 1.03e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413880 AT5G62680.1 62.411 564 209 3 23 584 30 592 0.0 754
Msa1413880 AT1G18880.1 60.417 576 222 4 20 592 2 574 0.0 748
Msa1413880 AT3G47960.1 60.791 556 215 3 30 584 55 608 0.0 716
Msa1413880 AT1G69870.1 46.528 576 289 7 13 584 34 594 0.0 531
Msa1413880 AT1G27080.1 44.324 555 277 9 39 584 17 548 8.94e-156 459
Msa1413880 AT1G27080.2 43.478 529 267 9 65 584 1 506 2.45e-142 423
Msa1413880 AT5G28470.2 37.818 550 319 7 39 581 20 553 1.36e-138 415
Msa1413880 AT1G52190.1 36.926 566 345 8 22 581 7 566 1.24e-136 411
Msa1413880 AT1G69860.1 39.336 572 315 8 23 585 2 550 2.24e-136 409
Msa1413880 AT5G28470.1 37.636 550 318 8 39 581 20 551 2.02e-135 407
Msa1413880 AT1G68570.1 37.372 586 353 7 21 597 1 581 2.06e-133 402
Msa1413880 AT3G54140.1 36.054 588 355 8 4 590 2 569 1.40e-131 397
Msa1413880 AT3G54140.2 36.054 588 355 8 4 590 2 569 1.40e-131 397
Msa1413880 AT3G16180.1 36.252 571 350 10 18 581 2 565 6.40e-131 396
Msa1413880 AT5G01180.2 36.348 575 345 8 21 585 1 564 4.52e-129 390
Msa1413880 AT5G01180.3 36.348 575 345 8 21 585 1 564 4.52e-129 390
Msa1413880 AT5G01180.1 36.348 575 345 8 21 585 1 564 4.52e-129 390
Msa1413880 AT1G68570.2 37.681 552 337 6 48 597 5 551 8.90e-128 387
Msa1413880 AT2G02040.1 34.648 583 370 7 7 588 13 585 1.60e-122 374
Msa1413880 AT1G62200.1 38.504 548 319 6 40 584 56 588 1.88e-121 372
Msa1413880 AT1G62200.2 36.742 577 318 7 40 584 56 617 2.73e-118 364
Msa1413880 AT1G62200.3 36.742 577 318 7 40 584 70 631 6.15e-118 364
Msa1413880 AT2G02020.1 33.559 590 326 8 12 583 1 542 2.00e-107 334
Msa1413880 AT4G21680.1 33.818 550 349 6 40 583 32 572 3.48e-104 327
Msa1413880 AT3G54450.1 33.996 553 335 10 39 585 15 543 1.32e-103 324
Msa1413880 AT3G45660.1 34.220 564 344 9 22 585 7 543 3.00e-103 323
Msa1413880 AT3G45660.3 34.220 564 344 9 22 585 7 543 3.00e-103 323
Msa1413880 AT3G45660.2 34.220 564 344 9 22 585 28 564 5.79e-103 323
Msa1413880 AT3G45650.1 34.369 547 332 9 39 585 25 544 1.10e-102 322
Msa1413880 AT2G37900.1 34.062 549 336 9 39 584 41 566 2.64e-102 322
Msa1413880 AT3G21670.1 33.507 576 352 7 18 587 11 561 4.02e-102 322
Msa1413880 AT5G13400.1 34.276 566 349 11 39 593 67 620 1.86e-101 321
Msa1413880 AT1G59740.1 33.276 577 359 10 13 580 14 573 3.27e-99 314
Msa1413880 AT3G53960.1 32.545 550 351 7 39 584 40 573 6.08e-99 313
Msa1413880 AT3G45680.1 32.566 565 355 7 21 585 5 543 6.60e-99 312
Msa1413880 AT1G12110.1 33.810 559 340 7 39 585 30 570 8.41e-98 310
Msa1413880 AT3G45650.2 32.810 573 332 10 39 585 25 570 5.12e-97 308
Msa1413880 AT3G45720.1 32.305 551 338 9 39 585 22 541 2.19e-96 305
Msa1413880 AT1G32450.1 30.479 584 383 7 15 582 6 582 7.31e-95 303
Msa1413880 AT2G26690.1 34.249 546 341 8 39 582 27 556 7.43e-95 302
Msa1413880 AT1G33440.1 32.746 568 350 10 37 596 39 582 3.31e-94 301
Msa1413880 AT5G46050.1 30.769 585 384 8 11 590 2 570 5.14e-94 300
Msa1413880 AT5G46040.1 32.258 558 357 7 40 592 31 572 1.87e-93 299
Msa1413880 AT2G37900.2 33.399 506 311 8 83 585 6 488 3.13e-93 295
Msa1413880 AT5G19640.1 29.725 619 379 12 1 594 4 591 1.30e-92 297
Msa1413880 AT2G26690.2 34.264 537 335 8 48 582 3 523 1.32e-92 295
Msa1413880 AT1G22550.1 32.578 574 356 8 18 585 12 560 5.74e-92 294
Msa1413880 AT3G45700.1 31.504 565 355 7 21 585 1 533 9.45e-92 293
Msa1413880 AT2G40460.1 32.206 562 352 9 40 595 28 566 1.25e-91 294
Msa1413880 AT3G45710.1 30.906 563 364 7 23 585 8 545 8.05e-91 291
Msa1413880 AT2G26690.3 34.156 527 329 8 58 582 1 511 5.90e-90 288
Msa1413880 AT1G72125.1 32.759 580 361 8 10 585 3 557 1.26e-88 285
Msa1413880 AT1G22540.1 33.029 548 331 8 39 581 33 549 3.93e-88 284
Msa1413880 AT1G72130.1 32.491 554 316 12 39 583 28 532 2.23e-87 281
Msa1413880 AT1G22570.1 32.578 574 357 10 18 585 12 561 3.01e-86 279
Msa1413880 AT1G27040.1 29.964 554 360 7 37 583 28 560 2.97e-85 277
Msa1413880 AT1G27040.2 29.964 554 360 7 37 583 24 556 3.21e-85 276
Msa1413880 AT1G72140.1 30.705 596 357 12 1 586 5 554 3.41e-85 276
Msa1413880 AT1G69850.1 29.680 593 395 8 12 590 1 585 3.00e-84 275
Msa1413880 AT1G27040.3 30.129 541 350 7 50 583 9 528 2.32e-83 271
Msa1413880 AT1G72120.1 31.897 580 362 10 10 585 3 553 1.11e-81 267
Msa1413880 AT1G22570.2 32.661 545 337 10 47 585 4 524 1.93e-81 266
Msa1413880 AT3G45690.1 29.806 567 322 14 23 585 6 500 4.21e-78 256
Msa1413880 AT5G46050.2 32.278 474 300 8 122 590 1 458 2.12e-77 253
Msa1413880 AT5G62730.1 29.570 558 356 9 37 585 57 586 8.15e-77 255
Msa1413880 AT5G62730.2 29.636 550 350 9 45 585 6 527 2.71e-76 252
Msa1413880 AT2G02020.2 30.169 590 325 12 12 583 1 521 6.41e-76 251
Msa1413880 AT5G14940.1 29.144 549 341 13 53 584 24 541 4.18e-75 249
Msa1413880 AT1G72130.2 32.166 457 256 10 136 583 3 414 1.53e-73 241
Msa1413880 AT1G72130.3 32.166 457 256 10 136 583 3 414 1.53e-73 241
Msa1413880 AT3G01350.1 27.568 555 348 12 53 582 24 549 4.46e-64 220
Msa1413880 AT3G25260.1 28.647 569 348 12 15 581 3 515 8.34e-63 216
Msa1413880 AT3G25280.1 27.241 569 360 15 18 581 2 521 1.64e-51 185
Msa1413880 AT5G11570.1 34.615 260 157 2 322 581 230 476 1.86e-47 173
Msa1413880 AT5G11570.1 34.667 225 140 3 35 256 12 232 1.64e-37 145
Msa1413880 AT2G38100.1 24.299 535 346 18 60 583 14 500 1.06e-27 117
Msa1413880 AT2G38100.3 24.299 535 346 18 60 583 20 506 1.37e-27 117
Msa1413880 AT2G38100.2 24.105 531 344 18 64 583 2 484 1.49e-27 117

Find 107 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTGATACATATTT+TGG 0.129529 tig0024075:-23230 Msa1413880:CDS
ATTAACAATGTTACAATTAA+AGG 0.135122 tig0024075:+20002 None:intergenic
GGAATAAATGTTATTATATA+TGG 0.143817 tig0024075:-20045 Msa1413880:three_prime_UTR
CATATATAACTGTGCATAAA+TGG 0.151166 tig0024075:-23628 Msa1413880:exon
CCAAATCTGCTACAGGAAAT+TGG 0.223411 tig0024075:-20250 Msa1413880:CDS
CTCCCTTTATTAAGATCTTC+TGG 0.250656 tig0024075:+20224 None:intergenic
CCAATTTCCTGTAGCAGATT+TGG 0.255669 tig0024075:+20250 None:intergenic
CAGCCTCTGTGGATGATCTT+AGG 0.259636 tig0024075:+23513 None:intergenic
TTCCTTACACATATCAATTC+AGG 0.263655 tig0024075:-22142 Msa1413880:intron
CATTCCAAACAGGGATTACT+TGG 0.266253 tig0024075:-22692 Msa1413880:intron
TAATGTTAAGCATGACATTA+TGG 0.268892 tig0024075:-20679 Msa1413880:CDS
ATTGGTGTTGGAATATTTCT+AGG 0.270353 tig0024075:-20575 Msa1413880:CDS
TGCATATTATTATACTTTCA+TGG 0.309975 tig0024075:+20077 None:intergenic
TTCTCTATACTTGTACCATT+TGG 0.316202 tig0024075:+20133 None:intergenic
GAAGAAATATGTATATAGTT+GGG 0.330670 tig0024075:+23678 None:intergenic
TTACCAGAAGATCTTAATAA+AGG 0.332263 tig0024075:-20227 Msa1413880:CDS
GGATTTGGTTTACTGTTAAT+AGG 0.335496 tig0024075:-22563 Msa1413880:CDS
TTTCTTGGTTGCATTCCAAT+AGG 0.353350 tig0024075:+20488 None:intergenic
CTGCTGCTACTACTACTAAT+AGG 0.356018 tig0024075:+20110 None:intergenic
ACCAACTTTGCTACCTTGCT+TGG 0.356960 tig0024075:-23257 Msa1413880:CDS
TTAGCTTTAACTAAGCCTAT+TGG 0.370660 tig0024075:-20503 Msa1413880:CDS
GGAAGAAATATGTATATAGT+TGG 0.380320 tig0024075:+23677 None:intergenic
GGCGCGATTTCGTCGATGTC+TGG 0.381630 tig0024075:-20464 Msa1413880:CDS
ATCACAGTCCTTCAAAGAAT+TGG 0.387420 tig0024075:-20593 Msa1413880:CDS
GTTCCTCAGTTGATACTAGC+TGG 0.396535 tig0024075:-20431 Msa1413880:CDS
GAATCAATAGTTTCTTCAAT+TGG 0.404560 tig0024075:-22463 Msa1413880:CDS
TAATAATATGCACAATCTTA+AGG 0.406091 tig0024075:-20066 Msa1413880:three_prime_UTR
TTCCAACACCAATTCTTTGA+AGG 0.409566 tig0024075:+20585 None:intergenic
AACTAGAAAACAAAGGTCAT+TGG 0.414450 tig0024075:+23709 None:intergenic
TCAAATGTGAGCTGGGCAAT+TGG 0.416070 tig0024075:-22380 Msa1413880:CDS
AGACCATGTAACTTAGCATT+TGG 0.416324 tig0024075:-22527 Msa1413880:CDS
AAAGCCATTTGTCCTGTTGT+TGG 0.429093 tig0024075:+22596 None:intergenic
AGATCTTAATAAAGGGAGAT+TGG 0.435026 tig0024075:-20219 Msa1413880:CDS
TACCAGAAGATCTTAATAAA+GGG 0.436377 tig0024075:-20226 Msa1413880:CDS
GGATCAGCTGATGAACCATC+TGG 0.441864 tig0024075:+20899 None:intergenic
GTGAGCTGGGCAATTGGTCT+TGG 0.444917 tig0024075:-22374 Msa1413880:CDS
TGGAACATTAGCAAACTTGT+TGG 0.452206 tig0024075:-23351 Msa1413880:CDS
CATATTTCTTCCTCCTGACC+AGG 0.457374 tig0024075:-23666 Msa1413880:five_prime_UTR
AGAACCAACAACAGGACAAA+TGG 0.467232 tig0024075:-22600 Msa1413880:CDS
AGTGGAAGAGTTGAAATGTT+TGG 0.475400 tig0024075:-20852 Msa1413880:CDS
AAGGTCATGCCTTTCATCAT+AGG 0.477830 tig0024075:-23489 Msa1413880:intron
AAAATTGCTGAAAACCATAT+AGG 0.479481 tig0024075:+20818 None:intergenic
AGTAGTAGTAGCAGCAGCAT+TGG 0.482165 tig0024075:-20104 Msa1413880:CDS
ACTAGAAAACAAAGGTCATT+GGG 0.483791 tig0024075:+23710 None:intergenic
CTAAGATCATCCACAGAGGC+TGG 0.484422 tig0024075:-23512 Msa1413880:CDS
ATATATAACTGTGCATAAAT+GGG 0.485238 tig0024075:-23627 Msa1413880:exon
AAAACAGATTCAGGAAAGAA+AGG 0.485517 tig0024075:-22485 Msa1413880:CDS
AAGAAATATGTATATAGTTG+GGG 0.488382 tig0024075:+23679 None:intergenic
ACAACTATTCTATCATAGAT+TGG 0.488817 tig0024075:+20653 None:intergenic
AATTAGAAATTTGAAAGGAT+CGG 0.488922 tig0024075:-19982 Msa1413880:three_prime_UTR
CCTGAGAATATGAAAAGCAT+TGG 0.492874 tig0024075:-20353 Msa1413880:CDS
GAAATTTGAAAGGATCGGAA+TGG 0.493644 tig0024075:-19977 Msa1413880:three_prime_UTR
AAATTTGAAAGGATCGGAAT+GGG 0.497160 tig0024075:-19976 Msa1413880:three_prime_UTR
ATCTAGATAACACCCTGGTC+AGG 0.498936 tig0024075:+23653 None:intergenic
CTTTCCTTTGCACAGTGTGG+TGG 0.509167 tig0024075:+22635 None:intergenic
CTTCAATCAAATAGACGAAT+GGG 0.509746 tig0024075:-20746 Msa1413880:CDS
TACCTGAATTGATATGTGTA+AGG 0.513650 tig0024075:+22140 None:intergenic
GTCCTTCAAAGAATTGGTGT+TGG 0.515088 tig0024075:-20587 Msa1413880:CDS
ACCAAGCAAGGTAGCAAAGT+TGG 0.519987 tig0024075:+23256 None:intergenic
ATTGGAATGCAACCAAGAAA+AGG 0.521618 tig0024075:-20485 Msa1413880:CDS
ACAACTTCCAAATCTGCTAC+AGG 0.522592 tig0024075:-20257 Msa1413880:CDS
ATATACAATCAAATGTGAGC+TGG 0.522986 tig0024075:-22388 Msa1413880:CDS
GAGAATATGAAAAGCATTGG+AGG 0.523033 tig0024075:-20350 Msa1413880:CDS
ACATGCAAAGAACCAACAAC+AGG 0.523772 tig0024075:-22608 Msa1413880:CDS
GCTATTAACATCAAAGCAGC+AGG 0.526773 tig0024075:+22347 None:intergenic
TTACTGTTAATAGGTGCTGC+AGG 0.527961 tig0024075:-22554 Msa1413880:CDS
CAAGTTTGCTAATGTTCCAA+TGG 0.533736 tig0024075:+23355 None:intergenic
TATACAATCAAATGTGAGCT+GGG 0.543295 tig0024075:-22387 Msa1413880:CDS
GAAAGCATTGGATGCTGAGA+AGG 0.544284 tig0024075:+22206 None:intergenic
TCGGTGAATCTTCGGAGCAA+AGG 0.545760 tig0024075:+20629 None:intergenic
ATGGTTCATCAGCTGATCCA+TGG 0.546248 tig0024075:-20895 Msa1413880:CDS
CTAGTGATGGGACTACCACT+TGG 0.547626 tig0024075:+22278 None:intergenic
TGTTGTTGGTTCTTTGCATG+TGG 0.552280 tig0024075:+22610 None:intergenic
TGCACCAGGTATCTTGAAGT+TGG 0.552408 tig0024075:+20718 None:intergenic
ACTTCAATCAAATAGACGAA+TGG 0.564079 tig0024075:-20747 Msa1413880:CDS
TACCATTTGTGCAAAAGTGA+AGG 0.567355 tig0024075:+22430 None:intergenic
AAGCTTTGAATTAATAGACA+TGG 0.568737 tig0024075:+22163 None:intergenic
GGAGAAAGAGAGACAGAAGA+AGG 0.569451 tig0024075:-23606 Msa1413880:CDS
ACACCAAATGCTAAGTTACA+TGG 0.574582 tig0024075:+22524 None:intergenic
AGAGAAGAAAGCACCAAGCA+AGG 0.574955 tig0024075:+23244 None:intergenic
GTTGCTGAACAATAACTAGA+TGG 0.575128 tig0024075:+20792 None:intergenic
TAATCAAAGAGTGAAAGCAT+TGG 0.577528 tig0024075:+22194 None:intergenic
GATCATCCACAGAGGCTGGA+AGG 0.582360 tig0024075:-23508 Msa1413880:CDS
TTGTTAATTAGAAATTTGAA+AGG 0.583405 tig0024075:-19987 Msa1413880:three_prime_UTR
AACACCAACTTCAAGATACC+TGG 0.590112 tig0024075:-20722 Msa1413880:CDS
CATTAATTACCTATGATGAA+AGG 0.593430 tig0024075:+23480 None:intergenic
AGCTTTGAATTAATAGACAT+GGG 0.599389 tig0024075:+22164 None:intergenic
GCATGACCTTCCAGCCTCTG+TGG 0.600147 tig0024075:+23502 None:intergenic
TCTTTGCAGCATACAACAAG+TGG 0.605971 tig0024075:-20870 Msa1413880:CDS
AACATCATCAATATCTTCAG+TGG 0.606716 tig0024075:-23284 Msa1413880:CDS
TATGTAAAAGTTAAACCAAG+TGG 0.609163 tig0024075:-22293 Msa1413880:CDS
TGTATGCTGCAAAGACTCCA+TGG 0.610232 tig0024075:+20878 None:intergenic
GCACTTTCCTTTGCACAGTG+TGG 0.621780 tig0024075:+22632 None:intergenic
TAGATAACACCCTGGTCAGG+AGG 0.622012 tig0024075:+23656 None:intergenic
TAACATTAAGAAGACAGTGT+AGG 0.625125 tig0024075:+20694 None:intergenic
TCATCCACCACACTGTGCAA+AGG 0.625702 tig0024075:-22639 Msa1413880:CDS
AGAAATATGTATATAGTTGG+GGG 0.626474 tig0024075:+23680 None:intergenic
ATATTTCTTCCTCCTGACCA+GGG 0.635142 tig0024075:-23665 Msa1413880:five_prime_UTR
CAAGACAAAATAAATCCAGA+TGG 0.635882 tig0024075:-20914 Msa1413880:CDS
AGAATATGAAAAGCATTGGA+GGG 0.646435 tig0024075:-20349 Msa1413880:CDS
AAGACAGTGTAGGATGCACC+AGG 0.652597 tig0024075:+20704 None:intergenic
TTTGAATTAATAGACATGGG+TGG 0.673189 tig0024075:+22167 None:intergenic
GAGGTTGAACTAGAAAACAA+AGG 0.698480 tig0024075:+23702 None:intergenic
AATTGAGAAAGAAAACAACA+TGG 0.708030 tig0024075:-23568 Msa1413880:CDS
AATCCAGCTAGTATCAACTG+AGG 0.717630 tig0024075:+20428 None:intergenic
ATGCAATCTAGATAACACCC+TGG 0.728647 tig0024075:+23648 None:intergenic
GAACCTAAGATCATCCACAG+AGG 0.792669 tig0024075:-23516 Msa1413880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATACTATAATTAATTTGT+AGG + tig0024075:20648-20667 None:intergenic 10.0%
!! ATAAATGAATTAAAATTTGA+TGG + tig0024075:21492-21511 None:intergenic 10.0%
!! GAATATTTATATGTAAAATT+AGG - tig0024075:21963-21982 Msa1413880:intron 10.0%
!! AATTTAATATCTAAACTTAA+CGG - tig0024075:22358-22377 Msa1413880:CDS 10.0%
!! TAATACTATTAGATAAAAAT+AGG - tig0024075:22632-22651 Msa1413880:CDS 10.0%
!! AATACTATTAGATAAAAATA+GGG - tig0024075:22633-22652 Msa1413880:CDS 10.0%
!!! AATGAAACTTTTGAAAAATT+AGG - tig0024075:20219-20238 Msa1413880:CDS 15.0%
!!! AATATTTAGTTTTAGTCAAA+TGG + tig0024075:20462-20481 None:intergenic 15.0%
!!! AAAAACTTTTCAATTAATTG+TGG - tig0024075:20530-20549 Msa1413880:CDS 15.0%
!!! TATATTTTCTTAAATCCTTA+CGG + tig0024075:20738-20757 None:intergenic 15.0%
!!! TTTGAAACAAAAAAACTTAA+AGG + tig0024075:21748-21767 None:intergenic 15.0%
!!! TAAGTTTTTTTGTTTCAAAT+TGG - tig0024075:21749-21768 Msa1413880:intron 15.0%
!! AGATAATTTAAAAGATCAAT+TGG - tig0024075:22166-22185 Msa1413880:CDS 15.0%
!! AAATGTAACAAATTTACAAA+AGG + tig0024075:22261-22280 None:intergenic 15.0%
!! AGATATTAAATTAAATCATC+TGG + tig0024075:22350-22369 None:intergenic 15.0%
!! AAACAAATAAAAAATCTACT+AGG + tig0024075:22592-22611 None:intergenic 15.0%
!! GGAATAAATGTTATTATATA+TGG - tig0024075:23554-23573 Msa1413880:CDS 15.0%
!! ATTAACAATGTTACAATTAA+AGG + tig0024075:23600-23619 None:intergenic 15.0%
!! TTGTTAATTAGAAATTTGAA+AGG - tig0024075:23612-23631 Msa1413880:CDS 15.0%
!! AAGAAATATGTATATAGTTG+GGG + tig0024075:19923-19942 None:intergenic 20.0%
!! GAAGAAATATGTATATAGTT+GGG + tig0024075:19924-19943 None:intergenic 20.0%
!! ATATATAACTGTGCATAAAT+GGG - tig0024075:19972-19991 Msa1413880:three_prime_UTR 20.0%
!!! GTTTTAACTTTTTTCAACAT+TGG + tig0024075:20505-20524 None:intergenic 20.0%
!!! AATTTTTCATGAAACTTTCT+AGG + tig0024075:20566-20585 None:intergenic 20.0%
!!! ATAATTAATTTGTAGGAGTT+TGG + tig0024075:20641-20660 None:intergenic 20.0%
!! TAAGAAAATATATGTTGTAC+TGG - tig0024075:20668-20687 Msa1413880:CDS 20.0%
!! ACATTAAAAAAGCAAAGTAA+CGG + tig0024075:21548-21567 None:intergenic 20.0%
!!! TGGTAGTGATAATTTTTTAA+AGG - tig0024075:21673-21692 Msa1413880:intron 20.0%
!! GTTATAATCATGTAACTTAA+AGG + tig0024075:21717-21736 None:intergenic 20.0%
!! TGATTAAGTTTGATGAAATT+AGG + tig0024075:21805-21824 None:intergenic 20.0%
!! AATTATCTCTTGTTACAAAT+TGG + tig0024075:22154-22173 None:intergenic 20.0%
!! TTAATCTATGTGAAAAAATC+AGG - tig0024075:22291-22310 Msa1413880:CDS 20.0%
!! TATCTTAAATGAACAAGATA+TGG + tig0024075:22500-22519 None:intergenic 20.0%
!!! AAATGTTGAGTTGAATAATT+TGG + tig0024075:22523-22542 None:intergenic 20.0%
!!! AACATTTTCATAAACTAGAT+TGG - tig0024075:22536-22555 Msa1413880:CDS 20.0%
!! ATTAGATAAAAATAGGGTAT+TGG - tig0024075:22639-22658 Msa1413880:CDS 20.0%
!!! TATTTTTATTACATGATTGC+TGG - tig0024075:23405-23424 Msa1413880:intron 20.0%
!!! ATTTTTATTACATGATTGCT+GGG - tig0024075:23406-23425 Msa1413880:intron 20.0%
!! TGCATATTATTATACTTTCA+TGG + tig0024075:23525-23544 None:intergenic 20.0%
!! TAATAATATGCACAATCTTA+AGG - tig0024075:23533-23552 Msa1413880:CDS 20.0%
!! AATTAGAAATTTGAAAGGAT+CGG - tig0024075:23617-23636 Msa1413880:exon 20.0%
! AGAAATATGTATATAGTTGG+GGG + tig0024075:19922-19941 None:intergenic 25.0%
! GGAAGAAATATGTATATAGT+TGG + tig0024075:19925-19944 None:intergenic 25.0%
! CATATATAACTGTGCATAAA+TGG - tig0024075:19971-19990 Msa1413880:three_prime_UTR 25.0%
! AATTGAGAAAGAAAACAACA+TGG - tig0024075:20031-20050 Msa1413880:three_prime_UTR 25.0%
! CATTAATTACCTATGATGAA+AGG + tig0024075:20122-20141 None:intergenic 25.0%
!! TGCTTGAAATTTTTATGAAC+AGG - tig0024075:20195-20214 Msa1413880:CDS 25.0%
!! TTCTTCTCTGATACATATTT+TGG - tig0024075:20369-20388 Msa1413880:CDS 25.0%
!!! GTTTGGTGTTTCATAAAATT+TGG + tig0024075:20624-20643 None:intergenic 25.0%
! TGTATATAATATCGTCATGT+CGG - tig0024075:20764-20783 Msa1413880:CDS 25.0%
! GAATCAATAGTTTCTTCAAT+TGG - tig0024075:21136-21155 Msa1413880:intron 25.0%
! TATGTAAAAGTTAAACCAAG+TGG - tig0024075:21306-21325 Msa1413880:intron 25.0%
! ACTTGAAAAATACTAGTGAT+GGG + tig0024075:21336-21355 None:intergenic 25.0%
!!! TAGTATTTTTCAAGTCTTAG+TGG - tig0024075:21341-21360 Msa1413880:intron 25.0%
!!! AGCTTTGAATTAATAGACAT+GGG + tig0024075:21438-21457 None:intergenic 25.0%
!!! AAGCTTTGAATTAATAGACA+TGG + tig0024075:21439-21458 None:intergenic 25.0%
! CATTAAAAAAGCAAAGTAAC+GGG + tig0024075:21547-21566 None:intergenic 25.0%
!!! GTTACTTTGCTTTTTTAATG+TGG - tig0024075:21547-21566 Msa1413880:intron 25.0%
! TAATTACTCAAAAAGTAGAG+TGG + tig0024075:21617-21636 None:intergenic 25.0%
!! TAAAGGCCAAATACTATTTT+CGG - tig0024075:21690-21709 Msa1413880:intron 25.0%
! GTTTGATGAAATTAGGATAA+TGG + tig0024075:21798-21817 None:intergenic 25.0%
!!! CTTAATCAAAAAGTGTTATG+TGG - tig0024075:21817-21836 Msa1413880:intron 25.0%
! CCATCTAACATTAAGATTAT+AGG + tig0024075:22060-22079 None:intergenic 25.0%
! CCTATAATCTTAATGTTAGA+TGG - tig0024075:22057-22076 Msa1413880:intron 25.0%
! TGGTAACAAAAGAAACTTAA+AGG - tig0024075:22186-22205 Msa1413880:CDS 25.0%
! AATGAACAAGATATGGAAAT+TGG + tig0024075:22493-22512 None:intergenic 25.0%
! AAAATTGCTGAAAACCATAT+AGG + tig0024075:22784-22803 None:intergenic 25.0%
! TAATGTTAAGCATGACATTA+TGG - tig0024075:22920-22939 Msa1413880:intron 25.0%
! ACAACTATTCTATCATAGAT+TGG + tig0024075:22949-22968 None:intergenic 25.0%
! TTACCAGAAGATCTTAATAA+AGG - tig0024075:23372-23391 Msa1413880:CDS 25.0%
! TACCAGAAGATCTTAATAAA+GGG - tig0024075:23373-23392 Msa1413880:CDS 25.0%
!! ACTTTTTGATGTTTTCCAAA+TGG - tig0024075:23451-23470 Msa1413880:intron 25.0%
!!! TTTGTGAAAAAAGTACTTCT+AGG + tig0024075:23681-23700 None:intergenic 25.0%
TTTGAAAAATTAGGAGCCAT+TGG - tig0024075:20228-20247 Msa1413880:CDS 30.0%
AACATCATCAATATCTTCAG+TGG - tig0024075:20315-20334 Msa1413880:CDS 30.0%
GCAAGGAAGAAGATTTAAAA+GGG + tig0024075:20888-20907 None:intergenic 30.0%
TGCAAGGAAGAAGATTTAAA+AGG + tig0024075:20889-20908 None:intergenic 30.0%
! CAAATGGCTTTTCTAATATC+AGG - tig0024075:21015-21034 Msa1413880:intron 30.0%
! GCTTTTCTAATATCAGGATT+TGG - tig0024075:21021-21040 Msa1413880:intron 30.0%
! GGATTTGGTTTACTGTTAAT+AGG - tig0024075:21036-21055 Msa1413880:intron 30.0%
TTCAATCCAAAAACAGATTC+AGG - tig0024075:21105-21124 Msa1413880:intron 30.0%
! TTCTTTCCTGAATCTGTTTT+TGG + tig0024075:21114-21133 None:intergenic 30.0%
AAAACAGATTCAGGAAAGAA+AGG - tig0024075:21114-21133 Msa1413880:intron 30.0%
ATATACAATCAAATGTGAGC+TGG - tig0024075:21211-21230 Msa1413880:intron 30.0%
TATACAATCAAATGTGAGCT+GGG - tig0024075:21212-21231 Msa1413880:intron 30.0%
!!! AGCATGTGTGTTATTTTTCA+TGG - tig0024075:21272-21291 Msa1413880:intron 30.0%
!!! GCATGTGTGTTATTTTTCAT+GGG - tig0024075:21273-21292 Msa1413880:intron 30.0%
GACTTGAAAAATACTAGTGA+TGG + tig0024075:21337-21356 None:intergenic 30.0%
! TAATCAAAGAGTGAAAGCAT+TGG + tig0024075:21408-21427 None:intergenic 30.0%
TTTGAATTAATAGACATGGG+TGG + tig0024075:21435-21454 None:intergenic 30.0%
TTCCTTACACATATCAATTC+AGG - tig0024075:21457-21476 Msa1413880:intron 30.0%
TACCTGAATTGATATGTGTA+AGG + tig0024075:21462-21481 None:intergenic 30.0%
! ATGGATGGAGTACAATTTTA+TGG + tig0024075:21516-21535 None:intergenic 30.0%
! ATTGTACTCCATCCATTTTA+AGG - tig0024075:21520-21539 Msa1413880:intron 30.0%
! AGTGGACACATTTAATTTAG+AGG + tig0024075:21599-21618 None:intergenic 30.0%
CATTTATCACTAGTAACAGT+TGG - tig0024075:21653-21672 Msa1413880:intron 30.0%
AAAGGACCGAAAATAGTATT+TGG + tig0024075:21699-21718 None:intergenic 30.0%
GTGGATGTTTAATGTTAAGT+TGG - tig0024075:21836-21855 Msa1413880:intron 30.0%
!! AACAAAGTTTGCTGAAAAGA+TGG - tig0024075:22096-22115 Msa1413880:intron 30.0%
ACAAAAAACTAATGTGATCG+AGG - tig0024075:22463-22482 Msa1413880:CDS 30.0%
CAAGACAAAATAAATCCAGA+TGG - tig0024075:22685-22704 Msa1413880:intron 30.0%
ACTTCAATCAAATAGACGAA+TGG - tig0024075:22852-22871 Msa1413880:intron 30.0%
CTTCAATCAAATAGACGAAT+GGG - tig0024075:22853-22872 Msa1413880:intron 30.0%
TAACATTAAGAAGACAGTGT+AGG + tig0024075:22908-22927 None:intergenic 30.0%
!! ATTGGTGTTGGAATATTTCT+AGG - tig0024075:23024-23043 Msa1413880:intron 30.0%
!! TTAGCTTTAACTAAGCCTAT+TGG - tig0024075:23096-23115 Msa1413880:intron 30.0%
!! AGAATATGAAAAGCATTGGA+GGG - tig0024075:23250-23269 Msa1413880:CDS 30.0%
AGATCTTAATAAAGGGAGAT+TGG - tig0024075:23380-23399 Msa1413880:CDS 30.0%
TTCTCTATACTTGTACCATT+TGG + tig0024075:23469-23488 None:intergenic 30.0%
AAATTTGAAAGGATCGGAAT+GGG - tig0024075:23623-23642 Msa1413880:exon 30.0%
! GGTATTTTCATGTTTCATTG+TGG - tig0024075:23644-23663 Msa1413880:five_prime_UTR 30.0%
GAGGTTGAACTAGAAAACAA+AGG + tig0024075:19900-19919 None:intergenic 35.0%
AATATGTATATAGTTGGGGG+AGG + tig0024075:19919-19938 None:intergenic 35.0%
!! CAAGTTTGCTAATGTTCCAA+TGG + tig0024075:20247-20266 None:intergenic 35.0%
TGGAACATTAGCAAACTTGT+TGG - tig0024075:20248-20267 Msa1413880:CDS 35.0%
! TTGCAGCTGTAATGTTTTTC+AGG + tig0024075:20296-20315 None:intergenic 35.0%
!! TATATGTTGTACTGGCTTGT+TGG - tig0024075:20676-20695 Msa1413880:CDS 35.0%
TATTCCAAGTAATCCCTGTT+TGG + tig0024075:20914-20933 None:intergenic 35.0%
AGACCATGTAACTTAGCATT+TGG - tig0024075:21072-21091 Msa1413880:intron 35.0%
ACACCAAATGCTAAGTTACA+TGG + tig0024075:21078-21097 None:intergenic 35.0%
!! TACCTTCACTTTTGCACAAA+TGG - tig0024075:21167-21186 Msa1413880:intron 35.0%
TACCATTTGTGCAAAAGTGA+AGG + tig0024075:21172-21191 None:intergenic 35.0%
!!! TGTGTGTTATTTTTCATGGG+AGG - tig0024075:21276-21295 Msa1413880:intron 35.0%
! AAAGTAACGGGACCTTAAAA+TGG + tig0024075:21535-21554 None:intergenic 35.0%
CTCTCAAAACTAAAGCTCAT+AGG - tig0024075:21876-21895 Msa1413880:intron 35.0%
! AAGCTCATAGGTGTGTTATT+CGG - tig0024075:21888-21907 Msa1413880:intron 35.0%
TTTGCTGAAAAGATGGATGA+CGG - tig0024075:22103-22122 Msa1413880:intron 35.0%
GTCATAAAAGTTGTCTCACA+TGG + tig0024075:22430-22449 None:intergenic 35.0%
AGTGGAAGAGTTGAAATGTT+TGG - tig0024075:22747-22766 Msa1413880:intron 35.0%
! TGGTGAGAGTTTTACCTATA+TGG - tig0024075:22767-22786 Msa1413880:intron 35.0%
GTTGCTGAACAATAACTAGA+TGG + tig0024075:22810-22829 None:intergenic 35.0%
!!! CTTCTTTTTCGGTGAATCTT+CGG + tig0024075:22981-23000 None:intergenic 35.0%
ATCACAGTCCTTCAAAGAAT+TGG - tig0024075:23006-23025 Msa1413880:intron 35.0%
TTCCAACACCAATTCTTTGA+AGG + tig0024075:23017-23036 None:intergenic 35.0%
TTTCTTGGTTGCATTCCAAT+AGG + tig0024075:23114-23133 None:intergenic 35.0%
ATTGGAATGCAACCAAGAAA+AGG - tig0024075:23114-23133 Msa1413880:intron 35.0%
! CCAATGCTTTTCATATTCTC+AGG + tig0024075:23249-23268 None:intergenic 35.0%
! CCTGAGAATATGAAAAGCAT+TGG - tig0024075:23246-23265 Msa1413880:CDS 35.0%
!! GAGAATATGAAAAGCATTGG+AGG - tig0024075:23249-23268 Msa1413880:CDS 35.0%
CTCCCTTTATTAAGATCTTC+TGG + tig0024075:23378-23397 None:intergenic 35.0%
GAAATTTGAAAGGATCGGAA+TGG - tig0024075:23622-23641 Msa1413880:exon 35.0%
!! TGAAAAAAGTACTTCTAGGC+AGG + tig0024075:23677-23696 None:intergenic 35.0%
ATATTTCTTCCTCCTGACCA+GGG - tig0024075:19934-19953 Msa1413880:three_prime_UTR 40.0%
ATGCAATCTAGATAACACCC+TGG + tig0024075:19954-19973 None:intergenic 40.0%
AAGGTCATGCCTTTCATCAT+AGG - tig0024075:20110-20129 Msa1413880:CDS 40.0%
! CTGCACAATCACTTCTTTTC+TGG - tig0024075:20413-20432 Msa1413880:CDS 40.0%
! CTTCAGATTAAAGGTGTGTC+TGG + tig0024075:20793-20812 None:intergenic 40.0%
! ACACCTTTAATCTGAAGCGT+TGG - tig0024075:20796-20815 Msa1413880:CDS 40.0%
TGCTACATAGTGTATGTGTC+TGG - tig0024075:20819-20838 Msa1413880:CDS 40.0%
TTCTTCCTTGCATTCCAAAC+AGG - tig0024075:20897-20916 Msa1413880:CDS 40.0%
TCTTCCTTGCATTCCAAACA+GGG - tig0024075:20898-20917 Msa1413880:CDS 40.0%
! TAATCCCTGTTTGGAATGCA+AGG + tig0024075:20905-20924 None:intergenic 40.0%
CATTCCAAACAGGGATTACT+TGG - tig0024075:20907-20926 Msa1413880:CDS 40.0%
!! TGTTGTTGGTTCTTTGCATG+TGG + tig0024075:20992-21011 None:intergenic 40.0%
ACATGCAAAGAACCAACAAC+AGG - tig0024075:20991-21010 Msa1413880:intron 40.0%
AGAACCAACAACAGGACAAA+TGG - tig0024075:20999-21018 Msa1413880:intron 40.0%
AAAGCCATTTGTCCTGTTGT+TGG + tig0024075:21006-21025 None:intergenic 40.0%
! TTACTGTTAATAGGTGCTGC+AGG - tig0024075:21045-21064 Msa1413880:intron 40.0%
GCTATTAACATCAAAGCAGC+AGG + tig0024075:21255-21274 None:intergenic 40.0%
TAACGGGACCTTAAAATGGA+TGG + tig0024075:21531-21550 None:intergenic 40.0%
ATAACTTAAAGAGCCACGAG+AGG - tig0024075:22228-22247 Msa1413880:CDS 40.0%
TCTTTGCAGCATACAACAAG+TGG - tig0024075:22729-22748 Msa1413880:intron 40.0%
AACACCAACTTCAAGATACC+TGG - tig0024075:22877-22896 Msa1413880:intron 40.0%
CGAAGATTCACCGAAAAAGA+AGG - tig0024075:22979-22998 Msa1413880:intron 40.0%
AGATTCACCGAAAAAGAAGG+CGG - tig0024075:22982-23001 Msa1413880:intron 40.0%
GTCCTTCAAAGAATTGGTGT+TGG - tig0024075:23012-23031 Msa1413880:intron 40.0%
!!! TTTCGTCGATGTCTGGTTTT+TGG - tig0024075:23142-23161 Msa1413880:intron 40.0%
AATCCAGCTAGTATCAACTG+AGG + tig0024075:23174-23193 None:intergenic 40.0%
! GCTGAAACTTTTACTGCTGT+TGG - tig0024075:23195-23214 Msa1413880:CDS 40.0%
!!! GTCACTTTTCTATTGTGGCA+TGG - tig0024075:23272-23291 Msa1413880:CDS 40.0%
ACAACTTCCAAATCTGCTAC+AGG - tig0024075:23342-23361 Msa1413880:CDS 40.0%
CCAATTTCCTGTAGCAGATT+TGG + tig0024075:23352-23371 None:intergenic 40.0%
CCAAATCTGCTACAGGAAAT+TGG - tig0024075:23349-23368 Msa1413880:CDS 40.0%
CTGCTGCTACTACTACTAAT+AGG + tig0024075:23492-23511 None:intergenic 40.0%
CATATTTCTTCCTCCTGACC+AGG - tig0024075:19933-19952 Msa1413880:three_prime_UTR 45.0%
ATCTAGATAACACCCTGGTC+AGG + tig0024075:19949-19968 None:intergenic 45.0%
GGAGAAAGAGAGACAGAAGA+AGG - tig0024075:19993-20012 Msa1413880:three_prime_UTR 45.0%
GAACCTAAGATCATCCACAG+AGG - tig0024075:20083-20102 Msa1413880:exon 45.0%
ACCAACTTTGCTACCTTGCT+TGG - tig0024075:20342-20361 Msa1413880:CDS 45.0%
ACCAAGCAAGGTAGCAAAGT+TGG + tig0024075:20346-20365 None:intergenic 45.0%
!! AGAGAAGAAAGCACCAAGCA+AGG + tig0024075:20358-20377 None:intergenic 45.0%
CGACTAGGGTTGAATTTCAG+TGG + tig0024075:20708-20727 None:intergenic 45.0%
CTTACGGATCAAAGCGACTA+GGG + tig0024075:20722-20741 None:intergenic 45.0%
GCACCAACGCTTCAGATTAA+AGG + tig0024075:20802-20821 None:intergenic 45.0%
TCAAATGTGAGCTGGGCAAT+TGG - tig0024075:21219-21238 Msa1413880:intron 45.0%
!! GAAAGCATTGGATGCTGAGA+AGG + tig0024075:21396-21415 None:intergenic 45.0%
!! AAAGAGCCACGAGAGGTATT+TGG - tig0024075:22235-22254 Msa1413880:CDS 45.0%
AAAAGGCCAAATACCTCTCG+TGG + tig0024075:22244-22263 None:intergenic 45.0%
ATGGTTCATCAGCTGATCCA+TGG - tig0024075:22704-22723 Msa1413880:intron 45.0%
TGTATGCTGCAAAGACTCCA+TGG + tig0024075:22724-22743 None:intergenic 45.0%
TGCACCAGGTATCTTGAAGT+TGG + tig0024075:22884-22903 None:intergenic 45.0%
! TGTGATGCCGCCTTCTTTTT+CGG + tig0024075:22992-23011 None:intergenic 45.0%
!!! GTCGATGTCTGGTTTTTGGT+TGG - tig0024075:23146-23165 Msa1413880:intron 45.0%
! GTTCCTCAGTTGATACTAGC+TGG - tig0024075:23168-23187 Msa1413880:intron 45.0%
!!! GGAGGGTCACTTTTCTATTG+TGG - tig0024075:23267-23286 Msa1413880:CDS 45.0%
! CTTTTCTATTGTGGCATGGC+AGG - tig0024075:23276-23295 Msa1413880:CDS 45.0%
AGTAGTAGTAGCAGCAGCAT+TGG - tig0024075:23495-23514 Msa1413880:CDS 45.0%
!!! AATATTTTAAATCAAATAAT+CGG + tig0024075:21936-21955 None:intergenic 5.0%
TAGATAACACCCTGGTCAGG+AGG + tig0024075:19946-19965 None:intergenic 50.0%
CAGCCTCTGTGGATGATCTT+AGG + tig0024075:20089-20108 None:intergenic 50.0%
CTAAGATCATCCACAGAGGC+TGG - tig0024075:20087-20106 Msa1413880:exon 50.0%
CCTTACGGATCAAAGCGACT+AGG + tig0024075:20723-20742 None:intergenic 50.0%
! CCTAGTCGCTTTGATCCGTA+AGG - tig0024075:20720-20739 Msa1413880:CDS 50.0%
TCATCCACCACACTGTGCAA+AGG - tig0024075:20960-20979 Msa1413880:intron 50.0%
CTTTCCTTTGCACAGTGTGG+TGG + tig0024075:20967-20986 None:intergenic 50.0%
GCACTTTCCTTTGCACAGTG+TGG + tig0024075:20970-20989 None:intergenic 50.0%
! CTAGTGATGGGACTACCACT+TGG + tig0024075:21324-21343 None:intergenic 50.0%
GGATCAGCTGATGAACCATC+TGG + tig0024075:22703-22722 None:intergenic 50.0%
AAGACAGTGTAGGATGCACC+AGG + tig0024075:22898-22917 None:intergenic 50.0%
TCGGTGAATCTTCGGAGCAA+AGG + tig0024075:22973-22992 None:intergenic 50.0%
! GACGAAATCGCGCCTTTTCT+TGG + tig0024075:23129-23148 None:intergenic 50.0%
GATCATCCACAGAGGCTGGA+AGG - tig0024075:20091-20110 Msa1413880:exon 55.0%
! GTGAGCTGGGCAATTGGTCT+TGG - tig0024075:21225-21244 Msa1413880:intron 55.0%
GCATGACCTTCCAGCCTCTG+TGG + tig0024075:20100-20119 None:intergenic 60.0%
GGCGCGATTTCGTCGATGTC+TGG - tig0024075:23135-23154 Msa1413880:intron 60.0%
Chromosome Type Strat End Strand Name
tig0024075 gene 19892 23729 19892 ID=Msa1413880;Name=Msa1413880
tig0024075 mRNA 19892 23729 19892 ID=Msa1413880-mRNA-1;Parent=Msa1413880;Name=Msa1413880-mRNA-1;_AED=0.36;_eAED=0.36;_QI=98|1|1|1|1|1|4|202|597
tig0024075 exon 19892 20967 19892 ID=Msa1413880-mRNA-1:exon:21481;Parent=Msa1413880-mRNA-1
tig0024075 exon 22143 22702 22143 ID=Msa1413880-mRNA-1:exon:21480;Parent=Msa1413880-mRNA-1
tig0024075 exon 23187 23404 23187 ID=Msa1413880-mRNA-1:exon:21479;Parent=Msa1413880-mRNA-1
tig0024075 exon 23490 23729 23490 ID=Msa1413880-mRNA-1:exon:21478;Parent=Msa1413880-mRNA-1
tig0024075 five_prime_UTR 23632 23729 23632 ID=Msa1413880-mRNA-1:five_prime_utr;Parent=Msa1413880-mRNA-1
tig0024075 CDS 23490 23631 23490 ID=Msa1413880-mRNA-1:cds;Parent=Msa1413880-mRNA-1
tig0024075 CDS 23187 23404 23187 ID=Msa1413880-mRNA-1:cds;Parent=Msa1413880-mRNA-1
tig0024075 CDS 22143 22702 22143 ID=Msa1413880-mRNA-1:cds;Parent=Msa1413880-mRNA-1
tig0024075 CDS 20094 20967 20094 ID=Msa1413880-mRNA-1:cds;Parent=Msa1413880-mRNA-1
tig0024075 three_prime_UTR 19892 20093 19892 ID=Msa1413880-mRNA-1:three_prime_utr;Parent=Msa1413880-mRNA-1
Gene Sequence

>Msa1413880

ATGGGAGAAAGAGAGACAGAAGAAGGAACAACAATGAAGACAATTGAGAAAGAAAACAACATGGAAAATAGTGAGAAACATGAAACAAATGATGAACCTAAGATCATCCACAGAGGCTGGAAGGTCATGCCTTTCATCATAGGAAATGAAACTTTTGAAAAATTAGGAGCCATTGGAACATTAGCAAACTTGTTGGTCTATCTTACAACTGTATTCAACCTGAAAAACATTACAGCTGCAAACATCATCAATATCTTCAGTGGCAGTACCAACTTTGCTACCTTGCTTGGTGCTTTCTTCTCTGATACATATTTTGGTCGCTACAATACATTAGCATTCTGCACAATCACTTCTTTTCTGGGATTACTTGGAATACAACTTACAGCAGTATTCAAGAATCTTCATCCACCACACTGTGCAAAGGAAAGTGCCACATGCAAAGAACCAACAACAGGACAAATGGCTTTTCTAATATCAGGATTTGGTTTACTGTTAATAGGTGCTGCAGGAGTTAGACCATGTAACTTAGCATTTGGTGTTGATCAATTCAATCCAAAAACAGATTCAGGAAAGAAAGGAATCAATAGTTTCTTCAATTGGTATTTCTTTACCTTCACTTTTGCACAAATGGTATCTTTAACACTAATTGTGTATATACAATCAAATGTGAGCTGGGCAATTGGTCTTGGAATTCCTGCTGCTTTGATGTTAATAGCATGTGTGTTATTTTTCATGGGAGGTAAATTGTATGTAAAAGTTAAACCAAGTGGTAGTCCCATCACTAGTATTTTTCAAGTCTTAGTGGTTGCAATCAAGAAAAGAAGACTTAGTCTACCTTCTCAGCATCCAATGCTTTCACTCTTTGATTATGTGCCACCCATGTCTATTAATTCAAAGCTTCCTTACACATATCAATTCAGGGTATTGGACAAAGCTGCAATGATAACATCACAAGACAAAATAAATCCAGATGGTTCATCAGCTGATCCATGGAGTCTTTGCAGCATACAACAAGTGGAAGAGTTGAAATGTTTGGTGAGAGTTTTACCTATATGGTTTTCAGCAATTTTGTACCATCTAGTTATTGTTCAGCAACACACACTTCTTGTTTTTCAAGCACTTCAATCAAATAGACGAATGGGAAACACCAACTTCAAGATACCTGGTGCATCCTACACTGTCTTCTTAATGTTAAGCATGACATTATGGTTACCAATCTATGATAGAATAGTTGTTCCTTTGCTCCGAAGATTCACCGAAAAAGAAGGCGGCATCACAGTCCTTCAAAGAATTGGTGTTGGAATATTTCTAGGTTTACTAAGCATACTTGTATCAGCATTTGTTGAAACACAAAGAAGACACTTAGCTTTAACTAAGCCTATTGGAATGCAACCAAGAAAAGGCGCGATTTCGTCGATGTCTGGTTTTTGGTTGGTTCCTCAGTTGATACTAGCTGGATTTGCTGAAACTTTTACTGCTGTTGGACAAATTGAATTTTACTATAAACAGTTTCCTGAGAATATGAAAAGCATTGGAGGGTCACTTTTCTATTGTGGCATGGCAGGTTCTAGTTATTTAAGTGCTTTTCTTGTTTCTGTTGTTCATAGAACAACTTCCAAATCTGCTACAGGAAATTGGTTACCAGAAGATCTTAATAAAGGGAGATTGGAATATTTTTATTACATGATTGCTGGGATAGAAGTCTTGAATTTTGTGTACTTTTTGATGTTTTCCAAATGGTACAAGTATAGAGAACCTATTAGTAGTAGTAGCAGCAGCATTGGTAGTCCATGA

Protein sequence

>Msa1413880

MGERETEEGTTMKTIEKENNMENSEKHETNDEPKIIHRGWKVMPFIIGNETFEKLGAIGTLANLLVYLTTVFNLKNITAANIINIFSGSTNFATLLGAFFSDTYFGRYNTLAFCTITSFLGLLGIQLTAVFKNLHPPHCAKESATCKEPTTGQMAFLISGFGLLLIGAAGVRPCNLAFGVDQFNPKTDSGKKGINSFFNWYFFTFTFAQMVSLTLIVYIQSNVSWAIGLGIPAALMLIACVLFFMGGKLYVKVKPSGSPITSIFQVLVVAIKKRRLSLPSQHPMLSLFDYVPPMSINSKLPYTYQFRVLDKAAMITSQDKINPDGSSADPWSLCSIQQVEELKCLVRVLPIWFSAILYHLVIVQQHTLLVFQALQSNRRMGNTNFKIPGASYTVFLMLSMTLWLPIYDRIVVPLLRRFTEKEGGITVLQRIGVGIFLGLLSILVSAFVETQRRHLALTKPIGMQPRKGAISSMSGFWLVPQLILAGFAETFTAVGQIEFYYKQFPENMKSIGGSLFYCGMAGSSYLSAFLVSVVHRTTSKSATGNWLPEDLNKGRLEYFYYMIAGIEVLNFVYFLMFSKWYKYREPISSSSSSIGSP*