AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0227290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227290 MtrunA17_Chr2g0326841 93.780 209 10 1 1 206 1 209 1.08e-142 396
Msa0227290 MtrunA17_Chr4g0028871 84.848 198 27 1 12 206 12 209 3.66e-121 342
Msa0227290 MtrunA17_Chr1g0181131 81.159 207 36 1 1 204 1 207 3.95e-121 342
Msa0227290 MtrunA17_Chr7g0264181 82.439 205 33 1 3 204 4 208 4.32e-121 342
Msa0227290 MtrunA17_Chr3g0142491 71.981 207 55 1 1 204 3 209 9.15e-108 308
Msa0227290 MtrunA17_Chr1g0177391 71.795 195 52 1 10 201 6 200 3.36e-102 294
Msa0227290 MtrunA17_Chr1g0151201 66.000 200 63 3 11 205 7 206 6.36e-93 270
Msa0227290 MtrunA17_Chr1g0156401 60.714 112 20 2 40 127 1 112 3.61e-35 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0227290 AT2G28305.1 84.422 199 28 1 10 205 5 203 8.16e-121 341
Msa0227290 AT2G37210.1 80.788 203 34 2 7 205 8 209 4.06e-118 334
Msa0227290 AT3G53450.1 79.310 203 39 1 7 206 8 210 3.83e-115 327
Msa0227290 AT2G37210.2 71.806 227 35 3 7 205 8 233 6.31e-112 320
Msa0227290 AT2G28305.3 85.714 182 23 1 10 188 5 186 6.38e-110 313
Msa0227290 AT5G06300.1 76.410 195 43 1 10 201 6 200 6.85e-107 306
Msa0227290 AT5G03270.1 77.419 186 39 1 10 192 16 201 1.71e-100 289
Msa0227290 AT2G35990.1 66.667 201 64 1 5 202 1 201 3.26e-98 284
Msa0227290 AT4G35190.1 66.502 203 65 1 5 204 1 203 2.19e-96 280
Msa0227290 AT5G03270.2 77.348 181 38 1 10 187 16 196 2.69e-96 278
Msa0227290 AT5G11950.1 65.327 199 66 1 10 205 7 205 1.39e-92 270
Msa0227290 AT5G11950.2 65.327 199 66 1 10 205 7 205 1.39e-92 270
Msa0227290 AT5G11950.3 65.327 199 66 1 10 205 7 205 1.39e-92 270
Msa0227290 AT4G35190.2 67.010 194 59 2 5 195 1 192 8.98e-92 267
Msa0227290 AT2G28305.2 85.926 135 16 1 10 141 5 139 5.75e-77 228
Msa0227290 AT2G35990.3 69.697 132 40 0 71 202 18 149 1.49e-67 204
Msa0227290 AT2G35990.2 69.697 132 40 0 71 202 18 149 1.49e-67 204
Msa0227290 AT5G11950.4 64.474 152 51 1 57 205 1 152 3.64e-65 198
Msa0227290 AT5G26140.2 53.061 147 47 1 81 205 6 152 2.04e-45 148
Msa0227290 AT5G26140.1 51.880 133 42 1 95 205 1 133 4.60e-38 129
Msa0227290 AT5G26140.3 56.863 102 44 0 104 205 17 118 1.76e-34 119

Find 64 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.105402 2_1:+78100579 Msa0227290:CDS
CTCTCTTGGCATTAGTGTTT+TGG 0.116726 2_1:-78100866 None:intergenic
TGTTTCTACTTTAATTACTA+TGG 0.284874 2_1:-78099990 None:intergenic
AATGATGCTGACTCGTCTAT+AGG 0.325760 2_1:-78100067 None:intergenic
GTTAATGTAAACTATCGATT+TGG 0.336123 2_1:+78105760 Msa0227290:three_prime_UTR
CCAACCTGGTAAGGCTATAA+AGG 0.339119 2_1:-78101985 None:intergenic
TATACTATGCTGCAGCTTAC+TGG 0.352094 2_1:+78101888 Msa0227290:intron
ATGATGCTGACTCGTCTATA+GGG 0.353587 2_1:-78100066 None:intergenic
TATTGAACTTGGAAAAGAAT+TGG 0.373481 2_1:+78100303 Msa0227290:CDS
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 2_1:+78100602 Msa0227290:CDS
TGGTAACAAAACTAGCTATA+AGG 0.381980 2_1:+78100273 Msa0227290:CDS
CGGTTATATGGTATATATAA+AGG 0.383302 2_1:-78100134 None:intergenic
CTGCATAACTTTACCTCTCT+TGG 0.385694 2_1:-78100880 None:intergenic
GTGGTATAAGCGCGGTTATA+TGG 0.390897 2_1:-78100146 None:intergenic
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 2_1:+78100603 Msa0227290:CDS
GCATCAAAGGAAAGCTGAAA+TGG 0.434148 2_1:+78101947 Msa0227290:CDS
TATTTGCATGAAGGTGGGTA+TGG 0.435005 2_1:+78104914 Msa0227290:intron
GAGTTGCCTCCAAGCTAAGC+TGG 0.437628 2_1:+78105551 Msa0227290:CDS
TTTGTCGATGAAAGTCAAAA+AGG 0.444110 2_1:-78105137 None:intergenic
AAATCTTTACCGGTTTATCA+TGG 0.448590 2_1:-78104985 None:intergenic
GTGGGATTGCTGAATGTTGA+TGG 0.455471 2_1:+78105103 Msa0227290:CDS
CCTTTGATATGAGTGGTTGA+TGG 0.456369 2_1:-78100170 None:intergenic
AAGGATGCTGCTATTGAACT+TGG 0.459571 2_1:+78100292 Msa0227290:CDS
TCTCTCACCTTTGATATGAG+TGG 0.472849 2_1:-78100177 None:intergenic
GGTAGAAGATCACAATTTCA+TGG 0.474201 2_1:+78105704 Msa0227290:three_prime_UTR
TTTGAATGAATGGTGAAAGA+GGG 0.481457 2_1:+78099965 None:intergenic
GATTTCCAAGCTGTTTATGA+TGG 0.487974 2_1:+78100629 Msa0227290:CDS
TTGGTGCAGACACAATTATA+TGG 0.490804 2_1:-78105195 None:intergenic
TTGTTTGTACCAACCTGGTA+AGG 0.495823 2_1:-78101994 None:intergenic
GTTTATGGAGGAGGCAGCAT+TGG 0.498113 2_1:+78100594 Msa0227290:CDS
CACAATTATATGGCGAGCTG+TGG 0.500721 2_1:-78105185 None:intergenic
ACTTGGCATCCATGATAAAC+CGG 0.501203 2_1:+78104976 Msa0227290:CDS
GATGCCTTTATAGCCTTACC+AGG 0.517415 2_1:+78101981 Msa0227290:CDS
ACAATTATATGGCGAGCTGT+GGG 0.517777 2_1:-78105184 None:intergenic
ATTGATCTAGTTTATGGAGG+AGG 0.523752 2_1:+78100585 Msa0227290:CDS
GACAACTCAAGGAACTACTA+TGG 0.525382 2_1:+78105683 Msa0227290:three_prime_UTR
AGGCAACTCTTTCATGCTGT+GGG 0.528340 2_1:-78105537 None:intergenic
TCAAAGGTGAGAGAGAAGAA+TGG 0.531372 2_1:+78100186 Msa0227290:exon
GTGATAACATGGGCTCAACT+TGG 0.532726 2_1:+78104959 Msa0227290:CDS
CAGTAGCTGACATGCATCAA+AGG 0.536960 2_1:+78101934 Msa0227290:CDS
GAGGCAGCATTGGTTTGATG+GGG 0.537940 2_1:+78100604 Msa0227290:CDS
ATCGACAAAGCTGTGGAGGA+AGG 0.545903 2_1:+78105151 Msa0227290:CDS
GAGGCAACTCTTTCATGCTG+TGG 0.549574 2_1:-78105538 None:intergenic
ATTTGCATGAAGGTGGGTAT+GGG 0.550161 2_1:+78104915 Msa0227290:intron
TTCCAAGCTGTTTATGATGG+TGG 0.560416 2_1:+78100632 Msa0227290:CDS
GACCACCATCATAAACAGCT+TGG 0.562114 2_1:-78100634 None:intergenic
GACTTTCATCGACAAAGCTG+TGG 0.562460 2_1:+78105144 Msa0227290:CDS
AGCTCCTTGAGGTGATAACA+TGG 0.564557 2_1:+78104948 Msa0227290:CDS
CAGCTTACTGGTGAAACAGT+AGG 0.570843 2_1:+78101900 Msa0227290:intron
GATATGAGTGGTTGATGGTG+TGG 0.576120 2_1:-78100165 None:intergenic
AATATTGATCTAGTTTATGG+AGG 0.578824 2_1:+78100582 Msa0227290:CDS
TTGAATGAATGGTGAAAGAG+GGG 0.580105 2_1:+78099966 None:intergenic
AGTTGCCTCCAAGCTAAGCT+GGG 0.587565 2_1:+78105552 Msa0227290:CDS
CCATCAACCACTCATATCAA+AGG 0.611945 2_1:+78100170 Msa0227290:five_prime_UTR
GAGCCCATGTTATCACCTCA+AGG 0.614099 2_1:-78104952 None:intergenic
TCAAAATGTGAGACAACTCA+AGG 0.622102 2_1:+78105672 Msa0227290:three_prime_UTR
TTTCATCGACAAAGCTGTGG+AGG 0.624003 2_1:+78105147 Msa0227290:CDS
CAAAACACTAATGCCAAGAG+AGG 0.626831 2_1:+78100867 Msa0227290:CDS
GACACTTGAGGAGCTCCTTG+AGG 0.631827 2_1:+78104937 Msa0227290:CDS
GACTCGTCTATAGGGAACCA+AGG 0.651655 2_1:-78100058 None:intergenic
CAATTATATGGCGAGCTGTG+GGG 0.655172 2_1:-78105183 None:intergenic
AGGTGGGTATGGGACACTTG+AGG 0.655697 2_1:+78104925 Msa0227290:intron
GCTCCTTGAGGTGATAACAT+GGG 0.684486 2_1:+78104949 Msa0227290:CDS
TTGATGGTGTGGTATAAGCG+CGG 0.761838 2_1:-78100154 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTTATATTTTGTTA+TGG - chr2_1:78100452-78100471 None:intergenic 10.0%
!!! TTGTATTTTGATATATAAAA+AGG + chr2_1:78100551-78100570 Msa0227290:intron 10.0%
!! ATGATAAAGAATATAAAAAA+GGG - chr2_1:78101251-78101270 None:intergenic 10.0%
!!! AAATTAAAGTTTACATTTTA+TGG - chr2_1:78102239-78102258 None:intergenic 10.0%
!! TTCATGATGATAATAAAATA+AGG - chr2_1:78100363-78100382 None:intergenic 15.0%
!! GATGATAAAGAATATAAAAA+AGG - chr2_1:78101252-78101271 None:intergenic 15.0%
!!! GTGTCATTTTAATTATTTTT+TGG - chr2_1:78101507-78101526 None:intergenic 15.0%
!! CTTCTAATATTTGATTAAAT+GGG + chr2_1:78102263-78102282 Msa0227290:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr2_1:78102561-78102580 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr2_1:78102585-78102604 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr2_1:78102584-78102603 Msa0227290:intron 15.0%
!! AAAATGAAAAGAGAAAAAAA+AGG - chr2_1:78102857-78102876 None:intergenic 15.0%
!!! TTTTTTTCTCTTTTCATTTT+AGG + chr2_1:78102857-78102876 Msa0227290:intron 15.0%
!! ATTTGTCATGTAATAATTAA+TGG - chr2_1:78103666-78103685 None:intergenic 15.0%
!! AAACATCAAAAATAAAGATT+AGG + chr2_1:78103719-78103738 Msa0227290:intron 15.0%
!!! AAAGATTATTGAATATTTTG+AGG + chr2_1:78104227-78104246 Msa0227290:intron 15.0%
!!! GATGATTGTATATTTTTTTA+AGG - chr2_1:78104781-78104800 None:intergenic 15.0%
!!! ATAAAAGTTTTTGTTTTTGA+AGG + chr2_1:78105081-78105100 Msa0227290:intron 15.0%
!!! TGTTTCTACTTTAATTACTA+TGG - chr2_1:78099993-78100012 None:intergenic 20.0%
!! ATATCATATCATAGGTATAT+AGG - chr2_1:78100506-78100525 None:intergenic 20.0%
!! TATATACCTATGATATGATA+TGG + chr2_1:78100505-78100524 Msa0227290:intron 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG + chr2_1:78100579-78100598 Msa0227290:CDS 20.0%
!! AGTTTGTAAATTTGAACTAT+AGG - chr2_1:78101121-78101140 None:intergenic 20.0%
!! TATATTCTTTATCATCATTG+AGG + chr2_1:78101256-78101275 Msa0227290:intron 20.0%
!! TTAAATGATTAAACATTGCA+AGG + chr2_1:78101403-78101422 Msa0227290:intron 20.0%
!! ATTAAGCGTCATTTAAAAAT+TGG - chr2_1:78101459-78101478 None:intergenic 20.0%
!! TTGAATAAAATTATCCTTAG+TGG - chr2_1:78101571-78101590 None:intergenic 20.0%
!! AAATATCGACAGTTAATATA+TGG - chr2_1:78101599-78101618 None:intergenic 20.0%
!! CCATTTAATCAAATATTAGA+AGG - chr2_1:78102265-78102284 None:intergenic 20.0%
!! CCTTCTAATATTTGATTAAA+TGG + chr2_1:78102262-78102281 Msa0227290:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr2_1:78102575-78102594 Msa0227290:intron 20.0%
!! ATGATTAAAAAGAAAGAGAA+TGG - chr2_1:78102618-78102637 None:intergenic 20.0%
!! TTATGTGTAATTCATCTTAA+AGG - chr2_1:78103016-78103035 None:intergenic 20.0%
!! TTAAAAGTTGACAAATTCAA+TGG + chr2_1:78103074-78103093 Msa0227290:intron 20.0%
!!! TTGTTGGTTAAAATCTATAT+AGG + chr2_1:78103199-78103218 Msa0227290:intron 20.0%
!!! ATTTGTTTTAGGTTAAAAGA+TGG - chr2_1:78103371-78103390 None:intergenic 20.0%
!!! GGTTAAGTTTTATTTGTTTT+AGG - chr2_1:78103382-78103401 None:intergenic 20.0%
!!! AAAATATTTTCCCTGAAAAA+CGG + chr2_1:78103532-78103551 Msa0227290:intron 20.0%
!!! CTTATCACTTTTCAATTAAT+GGG - chr2_1:78103750-78103769 None:intergenic 20.0%
!!! TCTTATCACTTTTCAATTAA+TGG - chr2_1:78103751-78103770 None:intergenic 20.0%
!! TTAATTGAAAAGTGATAAGA+TGG + chr2_1:78103751-78103770 Msa0227290:intron 20.0%
!!! ATTATATTTCAAGTAACGTT+TGG - chr2_1:78103969-78103988 None:intergenic 20.0%
!! ATCAAAATACCTATTATTGA+AGG - chr2_1:78104028-78104047 None:intergenic 20.0%
!! AAAACCAAATCAATAATGTT+TGG - chr2_1:78104274-78104293 None:intergenic 20.0%
!!! GAAAAAATTGGTTTCAAAAT+GGG - chr2_1:78104858-78104877 None:intergenic 20.0%
!!! AGAAAAAATTGGTTTCAAAA+TGG - chr2_1:78104859-78104878 None:intergenic 20.0%
!! GTACTAGAAATAGAAAAAAT+TGG - chr2_1:78104870-78104889 None:intergenic 20.0%
!!! GCAAATTTTATCTCATAAAA+GGG - chr2_1:78105057-78105076 None:intergenic 20.0%
!!! AGCAAATTTTATCTCATAAA+AGG - chr2_1:78105058-78105077 None:intergenic 20.0%
!!! AGAATTAGTTTTCATTCTTT+TGG + chr2_1:78105492-78105511 Msa0227290:intron 20.0%
! CGGTTATATGGTATATATAA+AGG - chr2_1:78100137-78100156 None:intergenic 25.0%
! TATTGAACTTGGAAAAGAAT+TGG + chr2_1:78100303-78100322 Msa0227290:CDS 25.0%
! TCAAAAGAATTTGACGTATT+TGG + chr2_1:78100476-78100495 Msa0227290:intron 25.0%
! TAAACACCATATCATATCAT+AGG - chr2_1:78100514-78100533 None:intergenic 25.0%
!! AATATTGATCTAGTTTATGG+AGG + chr2_1:78100582-78100601 Msa0227290:CDS 25.0%
!! TCTTCTTCTTAAACCTATTT+TGG + chr2_1:78100705-78100724 Msa0227290:intron 25.0%
! ATATTGAGATAACAAAAGCA+TGG - chr2_1:78101008-78101027 None:intergenic 25.0%
! CCAAGCTTAAATTTATGATA+GGG - chr2_1:78101327-78101346 None:intergenic 25.0%
! ACAAATAAAAAAATGTGTCG+CGG - chr2_1:78101675-78101694 None:intergenic 25.0%
!! ATGTAATGATGAGTTTTTGA+AGG - chr2_1:78101749-78101768 None:intergenic 25.0%
! AGTGATATGAGTATTTAGTA+GGG - chr2_1:78101806-78101825 None:intergenic 25.0%
! CTATTGTTTCAGTGATAATT+TGG + chr2_1:78101863-78101882 Msa0227290:intron 25.0%
! ATGATTCACAAGTTTAATAG+TGG - chr2_1:78102347-78102366 None:intergenic 25.0%
!! AGTAGTGATTCACTAATTTT+TGG - chr2_1:78102371-78102390 None:intergenic 25.0%
!! TATGTGTTGGTATATTTAGA+TGG + chr2_1:78102709-78102728 Msa0227290:intron 25.0%
!!! TTGGAAAGCACTTAAATTTT+TGG + chr2_1:78102966-78102985 Msa0227290:intron 25.0%
!! TTTTAACCAACAAAAAGAGT+AGG - chr2_1:78103192-78103211 None:intergenic 25.0%
! ATGTGATTCCTATGTAAATT+TGG - chr2_1:78103229-78103248 None:intergenic 25.0%
!! GTAAGTTCAAAAATTCCTTT+TGG - chr2_1:78103612-78103631 None:intergenic 25.0%
!! TATAGTTGATACGATCAAAT+TGG + chr2_1:78103864-78103883 Msa0227290:intron 25.0%
! CATTACGATAAAGTAAACAA+AGG - chr2_1:78104066-78104085 None:intergenic 25.0%
! GAGAAATTCTAATATAGTCA+CGG + chr2_1:78104132-78104151 Msa0227290:intron 25.0%
! AGAAATTCTAATATAGTCAC+GGG + chr2_1:78104133-78104152 Msa0227290:intron 25.0%
!!! ATTTTTTTTTCCTGATGGTA+CGG - chr2_1:78104612-78104631 None:intergenic 25.0%
!!! AGACAATTTTTTTTTCCTGA+TGG - chr2_1:78104617-78104636 None:intergenic 25.0%
!! TTTCTTCTGAGTTTGAATTT+TGG - chr2_1:78104716-78104735 None:intergenic 25.0%
!!! ATTTTTTTAAGGACCAATGT+TGG - chr2_1:78104770-78104789 None:intergenic 25.0%
! ATACAATCATCTAACAAAAC+TGG + chr2_1:78104790-78104809 Msa0227290:intron 25.0%
! TACAATCATCTAACAAAACT+GGG + chr2_1:78104791-78104810 Msa0227290:intron 25.0%
!!! TAGTACCATGTTTTCTAAAA+GGG + chr2_1:78104884-78104903 Msa0227290:intron 25.0%
!!! TATAACCCTTTTAGAAAACA+TGG - chr2_1:78104892-78104911 None:intergenic 25.0%
! GGTTATATATATTTGCATGA+AGG + chr2_1:78104905-78104924 Msa0227290:intron 25.0%
! TATATATATTTGCATGAAGG+TGG + chr2_1:78104908-78104927 Msa0227290:intron 25.0%
! ATATATATTTGCATGAAGGT+GGG + chr2_1:78104909-78104928 Msa0227290:intron 25.0%
! TGTAGAATGAAAATCTTTAC+CGG - chr2_1:78104998-78105017 None:intergenic 25.0%
!!! AAAGTTTTTGTTTTTGAAGG+TGG + chr2_1:78105084-78105103 Msa0227290:intron 25.0%
!!! AAGTTTTTGTTTTTGAAGGT+GGG + chr2_1:78105085-78105104 Msa0227290:intron 25.0%
!!! ATATTTTTGACAAGCTCTTT+TGG - chr2_1:78105223-78105242 None:intergenic 25.0%
! AAAAGAGCTTGTCAAAAATA+TGG + chr2_1:78105222-78105241 Msa0227290:CDS 25.0%
!! TCTTAGATTTCACAATTTTG+AGG - chr2_1:78105599-78105618 None:intergenic 25.0%
!! GTTAATGTAAACTATCGATT+TGG + chr2_1:78105760-78105779 Msa0227290:three_prime_UTR 25.0%
! ACATTGTATCAAGTTTTCCT+TGG + chr2_1:78100041-78100060 Msa0227290:five_prime_UTR 30.0%
!! TCAGCATCATTTTAATGATG+TGG + chr2_1:78100079-78100098 Msa0227290:five_prime_UTR 30.0%
! AAGAGAATTTGTGTGTTTTG+TGG + chr2_1:78100241-78100260 Msa0227290:CDS 30.0%
!!! TATAGCTAGTTTTGTTACCA+GGG - chr2_1:78100273-78100292 None:intergenic 30.0%
!!! TTATAGCTAGTTTTGTTACC+AGG - chr2_1:78100274-78100293 None:intergenic 30.0%
TGGTAACAAAACTAGCTATA+AGG + chr2_1:78100273-78100292 Msa0227290:CDS 30.0%
GGTTTCTGTAAATCCAAAAT+AGG - chr2_1:78100721-78100740 None:intergenic 30.0%
CGATAAATTTGACGATATCA+CGG - chr2_1:78100766-78100785 None:intergenic 30.0%
CTTATCTATCAATATACACC+TGG + chr2_1:78101139-78101158 Msa0227290:intron 30.0%
! AGAATCTAAAGGGTGTAATA+TGG - chr2_1:78101216-78101235 None:intergenic 30.0%
AATGCCAATGAGAATCTAAA+GGG - chr2_1:78101226-78101245 None:intergenic 30.0%
TAATGCCAATGAGAATCTAA+AGG - chr2_1:78101227-78101246 None:intergenic 30.0%
CCCTATCATAAATTTAAGCT+TGG + chr2_1:78101324-78101343 Msa0227290:intron 30.0%
GCCAAGCTTAAATTTATGAT+AGG - chr2_1:78101328-78101347 None:intergenic 30.0%
TTAAATGACGCTTAATTGCA+AGG + chr2_1:78101463-78101482 Msa0227290:intron 30.0%
AAAATGCATTTGTATCAGCA+GGG - chr2_1:78101776-78101795 None:intergenic 30.0%
AAAAATGCATTTGTATCAGC+AGG - chr2_1:78101777-78101796 None:intergenic 30.0%
! TGCTGATACAAATGCATTTT+TGG + chr2_1:78101776-78101795 Msa0227290:intron 30.0%
GAGTGATATGAGTATTTAGT+AGG - chr2_1:78101807-78101826 None:intergenic 30.0%
AAATATTGGAGCTAGAAAGA+AGG - chr2_1:78102020-78102039 None:intergenic 30.0%
! TAGCTCCAATATTTTTCTCA+TGG + chr2_1:78102026-78102045 Msa0227290:intron 30.0%
! TCCAATATTTTTCTCATGGA+TGG + chr2_1:78102030-78102049 Msa0227290:intron 30.0%
ACCATCCATGAGAAAAATAT+TGG - chr2_1:78102034-78102053 None:intergenic 30.0%
TGTGGAATGTAAATTCCAAT+AGG + chr2_1:78102053-78102072 Msa0227290:intron 30.0%
TTCCAATAGGTGATTCATTA+AGG + chr2_1:78102066-78102085 Msa0227290:intron 30.0%
CGAATTTGGATTTATGAAGT+TGG + chr2_1:78102152-78102171 Msa0227290:intron 30.0%
ATTTGGATTTATGAAGTTGG+AGG + chr2_1:78102155-78102174 Msa0227290:intron 30.0%
GGGTATCTCTATAAATGTAA+GGG + chr2_1:78102313-78102332 Msa0227290:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr2_1:78102667-78102686 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr2_1:78102668-78102687 Msa0227290:intron 30.0%
GTATTATTGGTCATATGTGT+TGG + chr2_1:78102696-78102715 Msa0227290:intron 30.0%
AAAGTGGGGAAAAAATTGAT+TGG - chr2_1:78102943-78102962 None:intergenic 30.0%
!!! ATTTTTTCCCCACTTTTTGT+TGG + chr2_1:78102947-78102966 Msa0227290:intron 30.0%
!!! ATTTTTGGAATTTGCAAGAG+TGG + chr2_1:78102981-78103000 Msa0227290:intron 30.0%
AAGAGTAGGTTGTAAAGTTT+AGG - chr2_1:78103178-78103197 None:intergenic 30.0%
! TTACAACCTACTCTTTTTGT+TGG + chr2_1:78103183-78103202 Msa0227290:intron 30.0%
TGATTCCTATGTAAATTTGG+TGG - chr2_1:78103226-78103245 None:intergenic 30.0%
! ATCATCTGAGTTGGATAATT+TGG - chr2_1:78103403-78103422 None:intergenic 30.0%
AGCTTATTAATCATCTGAGT+TGG - chr2_1:78103412-78103431 None:intergenic 30.0%
CTTTCAAAGCCTTCAATAAT+AGG + chr2_1:78104016-78104035 Msa0227290:intron 30.0%
! GTGTCCAAACATTATTGATT+TGG + chr2_1:78104267-78104286 Msa0227290:intron 30.0%
GAGATTAAAGTGTGTGAAAA+CGG - chr2_1:78104455-78104474 None:intergenic 30.0%
!!! CCTACAACTTTTTTAACTCT+AGG - chr2_1:78104692-78104711 None:intergenic 30.0%
CCTAGAGTTAAAAAAGTTGT+AGG + chr2_1:78104689-78104708 Msa0227290:intron 30.0%
!! AATGTTGGTGATTAGTTGTT+AGG - chr2_1:78104755-78104774 None:intergenic 30.0%
TAACAACTAATCACCAACAT+TGG + chr2_1:78104754-78104773 Msa0227290:intron 30.0%
ACAATCATCTAACAAAACTG+GGG + chr2_1:78104792-78104811 Msa0227290:intron 30.0%
! CTAGTACCATGTTTTCTAAA+AGG + chr2_1:78104883-78104902 Msa0227290:intron 30.0%
!! AAATCTTTACCGGTTTATCA+TGG - chr2_1:78104988-78105007 None:intergenic 30.0%
TTTGTCGATGAAAGTCAAAA+AGG - chr2_1:78105140-78105159 None:intergenic 30.0%
! GTTGGATAGAAGTATATAGA+TGG - chr2_1:78105256-78105275 None:intergenic 30.0%
TAGTCTATTCTCAGTTCAAT+CGG - chr2_1:78105292-78105311 None:intergenic 30.0%
GAACTGAGAATAGACTAATT+AGG + chr2_1:78105295-78105314 Msa0227290:intron 30.0%
AAGATTGAACCGCATTAAAT+CGG + chr2_1:78105369-78105388 Msa0227290:intron 30.0%
TTGAAGAACCAGTGAAAATT+CGG - chr2_1:78105463-78105482 None:intergenic 30.0%
!!! TCTTTTGGTTTCATTCATGT+AGG + chr2_1:78105507-78105526 Msa0227290:intron 30.0%
AGATGATTAGATGTAATCGA+TGG + chr2_1:78105616-78105635 Msa0227290:intron 30.0%
! ATTGATCTAGTTTATGGAGG+AGG + chr2_1:78100585-78100604 Msa0227290:CDS 35.0%
GATTTCCAAGCTGTTTATGA+TGG + chr2_1:78100629-78100648 Msa0227290:CDS 35.0%
TAAATTTGACGATATCACGG+TGG - chr2_1:78100763-78100782 None:intergenic 35.0%
! TCTCTTGGCATTAGTGTTTT+GGG - chr2_1:78100868-78100887 None:intergenic 35.0%
TGTGCGATTATTCATTCAAG+TGG + chr2_1:78101052-78101071 Msa0227290:intron 35.0%
GTGCGATTATTCATTCAAGT+GGG + chr2_1:78101053-78101072 Msa0227290:intron 35.0%
GAAAGACAAAATGGTTCAGA+AGG - chr2_1:78101183-78101202 None:intergenic 35.0%
ACATGGAGAGAAAGACAAAA+TGG - chr2_1:78101192-78101211 None:intergenic 35.0%
! AAAGGGTGTAATATGGAACA+TGG - chr2_1:78101209-78101228 None:intergenic 35.0%
TACACCCTTTAGATTCTCAT+TGG + chr2_1:78101219-78101238 Msa0227290:intron 35.0%
CCTTAGTGGAGTTTATTCAT+AGG - chr2_1:78101557-78101576 None:intergenic 35.0%
CCTATGAATAAACTCCACTA+AGG + chr2_1:78101554-78101573 Msa0227290:intron 35.0%
!! GATGAGTTTTTGAAGGTAGT+GGG - chr2_1:78101742-78101761 None:intergenic 35.0%
!! TGATGAGTTTTTGAAGGTAG+TGG - chr2_1:78101743-78101762 None:intergenic 35.0%
! TATTTTTCTCATGGATGGTG+TGG + chr2_1:78102035-78102054 Msa0227290:intron 35.0%
TGCCTTAATGAATCACCTAT+TGG - chr2_1:78102071-78102090 None:intergenic 35.0%
TCATTAAGGCACATGTCAAA+AGG + chr2_1:78102080-78102099 Msa0227290:intron 35.0%
CAAATTCGTCTATAGTCATG+CGG - chr2_1:78102140-78102159 None:intergenic 35.0%
! GGGGTATCTCTATAAATGTA+AGG + chr2_1:78102312-78102331 Msa0227290:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr2_1:78102432-78102451 None:intergenic 35.0%
GGAAAAAATTGATTGGCAGT+TGG - chr2_1:78102936-78102955 None:intergenic 35.0%
AGTGCTTTCCAACAAAAAGT+GGG - chr2_1:78102958-78102977 None:intergenic 35.0%
AAGTGCTTTCCAACAAAAAG+TGG - chr2_1:78102959-78102978 None:intergenic 35.0%
GACAAATTCAATGGAAGAGA+TGG + chr2_1:78103083-78103102 Msa0227290:intron 35.0%
CAATATCAATCGCTACTCAT+TGG - chr2_1:78103121-78103140 None:intergenic 35.0%
TAGGTCCACCAAATTTACAT+AGG + chr2_1:78103218-78103237 Msa0227290:intron 35.0%
TAGGTTAAAAGATGGTTGAC+TGG - chr2_1:78103363-78103382 None:intergenic 35.0%
!! AGGTCTAATTCCGTTTTTCA+GGG - chr2_1:78103545-78103564 None:intergenic 35.0%
! AATTCCTTTTGGACATCGTA+TGG - chr2_1:78103601-78103620 None:intergenic 35.0%
! TAATTAATGGACAACCGAAG+TGG - chr2_1:78103653-78103672 None:intergenic 35.0%
TGCAAGATCGATGTAAGAAT+GGG - chr2_1:78104110-78104129 None:intergenic 35.0%
TTGCAAGATCGATGTAAGAA+TGG - chr2_1:78104111-78104130 None:intergenic 35.0%
ATTCTTACATCGATCTTGCA+AGG + chr2_1:78104110-78104129 Msa0227290:intron 35.0%
! GTGACCAAACACTATTTTCT+TGG - chr2_1:78104160-78104179 None:intergenic 35.0%
!!! TTGATTTGGTTTTGTGACCA+TGG + chr2_1:78104281-78104300 Msa0227290:intron 35.0%
AAGAATATCTCTCTTGCAAG+TGG + chr2_1:78104304-78104323 Msa0227290:intron 35.0%
! CTATATCTTTGGGTTTGTGT+GGG - chr2_1:78104334-78104353 None:intergenic 35.0%
CACACAAACCCAAAGATATA+GGG + chr2_1:78104333-78104352 Msa0227290:intron 35.0%
CTCAGCTACTAGAATTTGAT+CGG + chr2_1:78104472-78104491 Msa0227290:intron 35.0%
AAATCTGCATCCCATGATAA+GGG + chr2_1:78104534-78104553 Msa0227290:intron 35.0%
AAAAACAAATCCGTACCATC+AGG + chr2_1:78104599-78104618 Msa0227290:intron 35.0%
TTGGTGCAGACACAATTATA+TGG - chr2_1:78105198-78105217 None:intergenic 35.0%
AGAGCTTGTCAAAAATATGG+AGG + chr2_1:78105225-78105244 Msa0227290:CDS 35.0%
ATCGGTTAAATCGAAAACGT+TGG - chr2_1:78105274-78105293 None:intergenic 35.0%
CTGAGAATAGACTAATTAGG+TGG + chr2_1:78105298-78105317 Msa0227290:intron 35.0%
GAATAGACTAATTAGGTGGT+TGG + chr2_1:78105302-78105321 Msa0227290:intron 35.0%
!! TTAGGTGGTTGGTTTAATCT+AGG + chr2_1:78105313-78105332 Msa0227290:intron 35.0%
! AATTCGGGTTATGGTTCAAT+TGG - chr2_1:78105447-78105466 None:intergenic 35.0%
TGAAGAACCAGTGAAAATTC+GGG - chr2_1:78105462-78105481 None:intergenic 35.0%
TCAAAATGTGAGACAACTCA+AGG + chr2_1:78105672-78105691 Msa0227290:three_prime_UTR 35.0%
GGTAGAAGATCACAATTTCA+TGG + chr2_1:78105704-78105723 Msa0227290:three_prime_UTR 35.0%
! GTAAGAGCACACAAAAATCT+CGG - chr2_1:78105732-78105751 None:intergenic 35.0%
!! ATGATGCTGACTCGTCTATA+GGG - chr2_1:78100069-78100088 None:intergenic 40.0%
!! AATGATGCTGACTCGTCTAT+AGG - chr2_1:78100070-78100089 None:intergenic 40.0%
CCTTTGATATGAGTGGTTGA+TGG - chr2_1:78100173-78100192 None:intergenic 40.0%
CCATCAACCACTCATATCAA+AGG + chr2_1:78100170-78100189 Msa0227290:five_prime_UTR 40.0%
TCTCTCACCTTTGATATGAG+TGG - chr2_1:78100180-78100199 None:intergenic 40.0%
TCAAAGGTGAGAGAGAAGAA+TGG + chr2_1:78100186-78100205 Msa0227290:exon 40.0%
AAGGATGCTGCTATTGAACT+TGG + chr2_1:78100292-78100311 Msa0227290:CDS 40.0%
TTCCAAGCTGTTTATGATGG+TGG + chr2_1:78100632-78100651 Msa0227290:CDS 40.0%
ATGGTGGTCGACATGTAATT+GGG + chr2_1:78100648-78100667 Msa0227290:intron 40.0%
GAAGAAGAAGATGAAGCTCT+TGG - chr2_1:78100678-78100697 None:intergenic 40.0%
! CTCTCTTGGCATTAGTGTTT+TGG - chr2_1:78100869-78100888 None:intergenic 40.0%
CAAAACACTAATGCCAAGAG+AGG + chr2_1:78100867-78100886 Msa0227290:CDS 40.0%
CTGCATAACTTTACCTCTCT+TGG - chr2_1:78100883-78100902 None:intergenic 40.0%
GAGGTAAAGTTATGCAGCTT+TGG + chr2_1:78100886-78100905 Msa0227290:intron 40.0%
TTCATTCAAGTGGGAACTAG+TGG + chr2_1:78101062-78101081 Msa0227290:intron 40.0%
TCAATATACACCTGGCAATC+TGG + chr2_1:78101147-78101166 Msa0227290:intron 40.0%
CAATATACACCTGGCAATCT+GGG + chr2_1:78101148-78101167 Msa0227290:intron 40.0%
AATATACACCTGGCAATCTG+GGG + chr2_1:78101149-78101168 Msa0227290:intron 40.0%
TATACTATGCTGCAGCTTAC+TGG + chr2_1:78101888-78101907 Msa0227290:intron 40.0%
GCATCAAAGGAAAGCTGAAA+TGG + chr2_1:78101947-78101966 Msa0227290:CDS 40.0%
TTGTTTGTACCAACCTGGTA+AGG - chr2_1:78101997-78102016 None:intergenic 40.0%
CGCATGACTATAGACGAATT+TGG + chr2_1:78102138-78102157 Msa0227290:intron 40.0%
TTGTCACGATTGCATGAATG+CGG - chr2_1:78102184-78102203 None:intergenic 40.0%
TCATGCAATCGTGACAACAT+CGG + chr2_1:78102187-78102206 Msa0227290:intron 40.0%
ATATTCTAACCGCGTGAACT+AGG + chr2_1:78102291-78102310 Msa0227290:intron 40.0%
TATTCTAACCGCGTGAACTA+GGG + chr2_1:78102292-78102311 Msa0227290:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_1:78102672-78102691 None:intergenic 40.0%
TGTGCTGCGTATTAATTGGA+GGG - chr2_1:78102532-78102551 None:intergenic 40.0%
GTAGTGTGCTGCGTATTAAT+TGG - chr2_1:78102536-78102555 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_1:78102672-78102691 Msa0227290:intron 40.0%
!! TGAAACGGAGGGAGTATTAT+TGG + chr2_1:78102683-78102702 Msa0227290:intron 40.0%
GTGCTTTCCAACAAAAAGTG+GGG - chr2_1:78102957-78102976 None:intergenic 40.0%
!! GAGGTCTAATTCCGTTTTTC+AGG - chr2_1:78103546-78103565 None:intergenic 40.0%
GACATGTCAATACGACTTAG+AGG - chr2_1:78103565-78103584 None:intergenic 40.0%
AAGACCATACGATGTCCAAA+AGG + chr2_1:78103594-78103613 Msa0227290:intron 40.0%
ATTACATGAATGCGCCACTT+CGG + chr2_1:78103636-78103655 Msa0227290:intron 40.0%
!! GAAGGCTTTGAAAGCGATTA+AGG - chr2_1:78104010-78104029 None:intergenic 40.0%
GGGACCAAGAAAATAGTGTT+TGG + chr2_1:78104153-78104172 Msa0227290:intron 40.0%
GCAAGAGAGATATTCTTCCA+TGG - chr2_1:78104301-78104320 None:intergenic 40.0%
! CCTATATCTTTGGGTTTGTG+TGG - chr2_1:78104335-78104354 None:intergenic 40.0%
CCACACAAACCCAAAGATAT+AGG + chr2_1:78104332-78104351 Msa0227290:intron 40.0%
ATCATGGGCCCTATATCTTT+GGG - chr2_1:78104344-78104363 None:intergenic 40.0%
TATCATGGGCCCTATATCTT+TGG - chr2_1:78104345-78104364 None:intergenic 40.0%
AAGATATAGGGCCCATGATA+AGG + chr2_1:78104345-78104364 Msa0227290:intron 40.0%
AGATATAGGGCCCATGATAA+GGG + chr2_1:78104346-78104365 Msa0227290:intron 40.0%
GCTACTAGAATTTGATCGGA+TGG + chr2_1:78104476-78104495 Msa0227290:intron 40.0%
GAAATCTGCATCCCATGATA+AGG + chr2_1:78104533-78104552 Msa0227290:intron 40.0%
ATCTAACAAAACTGGGGAAG+TGG + chr2_1:78104798-78104817 Msa0227290:intron 40.0%
TATTTGCATGAAGGTGGGTA+TGG + chr2_1:78104914-78104933 Msa0227290:intron 40.0%
ATTTGCATGAAGGTGGGTAT+GGG + chr2_1:78104915-78104934 Msa0227290:intron 40.0%
ACAATTATATGGCGAGCTGT+GGG - chr2_1:78105187-78105206 None:intergenic 40.0%
!! TTGACAAGCTCTTTTGGTGT+TGG - chr2_1:78105217-78105236 None:intergenic 40.0%
! GCGATTCAACCGATTTAATG+CGG - chr2_1:78105381-78105400 None:intergenic 40.0%
GCATTAAATCGGTTGAATCG+CGG + chr2_1:78105380-78105399 Msa0227290:intron 40.0%
! ACCATAACCCGAATTTTCAC+TGG + chr2_1:78105452-78105471 Msa0227290:intron 40.0%
! ACCAGTGAAAATTCGGGTTA+TGG - chr2_1:78105456-78105475 None:intergenic 40.0%
! TTCATTTTCCCAGCTTAGCT+TGG - chr2_1:78105563-78105582 None:intergenic 40.0%
GACAACTCAAGGAACTACTA+TGG + chr2_1:78105683-78105702 Msa0227290:three_prime_UTR 40.0%
GTGGTATAAGCGCGGTTATA+TGG - chr2_1:78100149-78100168 None:intergenic 45.0%
!! TTGATGGTGTGGTATAAGCG+CGG - chr2_1:78100157-78100176 None:intergenic 45.0%
!! GATATGAGTGGTTGATGGTG+TGG - chr2_1:78100168-78100187 None:intergenic 45.0%
GACCACCATCATAAACAGCT+TGG - chr2_1:78100637-78100656 None:intergenic 45.0%
! GATGGTGGTCGACATGTAAT+TGG + chr2_1:78100647-78100666 Msa0227290:intron 45.0%
GGCACAATGCGATTATGCTA+GGG - chr2_1:78100742-78100761 None:intergenic 45.0%
TGGCACAATGCGATTATGCT+AGG - chr2_1:78100743-78100762 None:intergenic 45.0%
ATAAACAACCCCAGATTGCC+AGG - chr2_1:78101160-78101179 None:intergenic 45.0%
! CATTGCAAGGCTAATTTGCC+AGG + chr2_1:78101416-78101435 Msa0227290:intron 45.0%
! TTGCCAGGATTAGCGATTAC+AGG + chr2_1:78101431-78101450 Msa0227290:intron 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr2_1:78101432-78101451 Msa0227290:intron 45.0%
CAGCTTACTGGTGAAACAGT+AGG + chr2_1:78101900-78101919 Msa0227290:intron 45.0%
CAGTAGCTGACATGCATCAA+AGG + chr2_1:78101934-78101953 Msa0227290:CDS 45.0%
! GATGCCTTTATAGCCTTACC+AGG + chr2_1:78101981-78102000 Msa0227290:CDS 45.0%
CCAACCTGGTAAGGCTATAA+AGG - chr2_1:78101988-78102007 None:intergenic 45.0%
! CCTTTATAGCCTTACCAGGT+TGG + chr2_1:78101985-78102004 Msa0227290:intron 45.0%
GAAGGTTGTTTGTACCAACC+TGG - chr2_1:78102002-78102021 None:intergenic 45.0%
ATTCTAACCGCGTGAACTAG+GGG + chr2_1:78102293-78102312 Msa0227290:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_1:78102671-78102690 None:intergenic 45.0%
GTGTGCTGCGTATTAATTGG+AGG - chr2_1:78102533-78102552 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_1:78102671-78102690 Msa0227290:intron 45.0%
CAATGGAAGAGATGGTGAAG+AGG + chr2_1:78103091-78103110 Msa0227290:intron 45.0%
TGCGTGAAGCAATTACAGCA+GGG - chr2_1:78104381-78104400 None:intergenic 45.0%
GCCATTGAACACTGATCCAA+CGG + chr2_1:78104414-78104433 Msa0227290:intron 45.0%
ACCGTTGGATCAGTGTTCAA+TGG - chr2_1:78104418-78104437 None:intergenic 45.0%
GACAGAACTATCGTAACCGT+TGG - chr2_1:78104433-78104452 None:intergenic 45.0%
CTAGAATTTGATCGGATGGC+TGG + chr2_1:78104480-78104499 Msa0227290:intron 45.0%
AGATTTCCTGCTGTAACAGC+AGG - chr2_1:78104520-78104539 None:intergenic 45.0%
GAGAAAGCTGCCCTTATCAT+GGG - chr2_1:78104547-78104566 None:intergenic 45.0%
AGAGAAAGCTGCCCTTATCA+TGG - chr2_1:78104548-78104567 None:intergenic 45.0%
AGCTCCTTGAGGTGATAACA+TGG + chr2_1:78104948-78104967 Msa0227290:CDS 45.0%
GCTCCTTGAGGTGATAACAT+GGG + chr2_1:78104949-78104968 Msa0227290:CDS 45.0%
GTGGGATTGCTGAATGTTGA+TGG + chr2_1:78105103-78105122 Msa0227290:CDS 45.0%
GACTTTCATCGACAAAGCTG+TGG + chr2_1:78105144-78105163 Msa0227290:CDS 45.0%
TTTCATCGACAAAGCTGTGG+AGG + chr2_1:78105147-78105166 Msa0227290:CDS 45.0%
CAATTATATGGCGAGCTGTG+GGG - chr2_1:78105186-78105205 None:intergenic 45.0%
CACAATTATATGGCGAGCTG+TGG - chr2_1:78105188-78105207 None:intergenic 45.0%
AGGCAACTCTTTCATGCTGT+GGG - chr2_1:78105540-78105559 None:intergenic 45.0%
!! ATTTTCCCAGCTTAGCTTGG+AGG - chr2_1:78105560-78105579 None:intergenic 45.0%
!! AATTAAATATTAGATTTATA+TGG - chr2_1:78101350-78101369 None:intergenic 5.0%
!!! AATATAATTTTGATATATTT+TGG - chr2_1:78102758-78102777 None:intergenic 5.0%
GACTCGTCTATAGGGAACCA+AGG - chr2_1:78100061-78100080 None:intergenic 50.0%
! GTGTTTTGTGGTAGTAGCCC+TGG + chr2_1:78100253-78100272 Msa0227290:CDS 50.0%
GTTTATGGAGGAGGCAGCAT+TGG + chr2_1:78100594-78100613 Msa0227290:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG + chr2_1:78100602-78100621 Msa0227290:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG + chr2_1:78100603-78100622 Msa0227290:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG + chr2_1:78100604-78100623 Msa0227290:CDS 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr2_1:78101437-78101456 None:intergenic 50.0%
AGAGATACCCCTAGTTCACG+CGG - chr2_1:78102303-78102322 None:intergenic 50.0%
GGAATTTGCAAGAGTGGTGC+AGG + chr2_1:78102987-78103006 Msa0227290:intron 50.0%
GGATCCAGGTCCCTTATCAT+GGG - chr2_1:78104359-78104378 None:intergenic 50.0%
GCGTGAAGCAATTACAGCAG+GGG - chr2_1:78104380-78104399 None:intergenic 50.0%
CTGCGTGAAGCAATTACAGC+AGG - chr2_1:78104382-78104401 None:intergenic 50.0%
GCTGTAATTGCTTCACGCAG+TGG + chr2_1:78104382-78104401 Msa0227290:intron 50.0%
ATAGCACCTGCTGTTACAGC+AGG + chr2_1:78104511-78104530 Msa0227290:intron 50.0%
GAGCCCATGTTATCACCTCA+AGG - chr2_1:78104955-78104974 None:intergenic 50.0%
ATCGACAAAGCTGTGGAGGA+AGG + chr2_1:78105151-78105170 Msa0227290:CDS 50.0%
GAGGCAACTCTTTCATGCTG+TGG - chr2_1:78105541-78105560 None:intergenic 50.0%
AGTTGCCTCCAAGCTAAGCT+GGG + chr2_1:78105552-78105571 Msa0227290:CDS 50.0%
GGGATCCAGGTCCCTTATCA+TGG - chr2_1:78104360-78104379 None:intergenic 55.0%
GCAATTACAGCAGGGGATCC+AGG - chr2_1:78104373-78104392 None:intergenic 55.0%
AGGTGGGTATGGGACACTTG+AGG + chr2_1:78104925-78104944 Msa0227290:intron 55.0%
GACACTTGAGGAGCTCCTTG+AGG + chr2_1:78104937-78104956 Msa0227290:CDS 55.0%
GAGTTGCCTCCAAGCTAAGC+TGG + chr2_1:78105551-78105570 Msa0227290:CDS 55.0%
GGCAGTTGGCACGTCACAAG+TGG - chr2_1:78102922-78102941 None:intergenic 60.0%
AGGGCCCATGATAAGGGACC+TGG + chr2_1:78104352-78104371 Msa0227290:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 78099979 78105812 78099979 ID=Msa0227290;Name=Msa0227290
chr2_1 mRNA 78099979 78105812 78099979 ID=Msa0227290-mRNA-1;Parent=Msa0227290;Name=Msa0227290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=226|0.85|0.87|1|0.57|0.62|8|191|206
chr2_1 exon 78099979 78100324 78099979 ID=Msa0227290-mRNA-1:exon:23810;Parent=Msa0227290-mRNA-1
chr2_1 exon 78100573 78100661 78100573 ID=Msa0227290-mRNA-1:exon:23811;Parent=Msa0227290-mRNA-1
chr2_1 exon 78100858 78100888 78100858 ID=Msa0227290-mRNA-1:exon:23812;Parent=Msa0227290-mRNA-1
chr2_1 exon 78101903 78102002 78101903 ID=Msa0227290-mRNA-1:exon:23813;Parent=Msa0227290-mRNA-1
chr2_1 exon 78104927 78104997 78104927 ID=Msa0227290-mRNA-1:exon:23814;Parent=Msa0227290-mRNA-1
chr2_1 exon 78105103 78105246 78105103 ID=Msa0227290-mRNA-1:exon:23815;Parent=Msa0227290-mRNA-1
chr2_1 exon 78105529 78105625 78105529 ID=Msa0227290-mRNA-1:exon:23816;Parent=Msa0227290-mRNA-1
chr2_1 exon 78105653 78105812 78105653 ID=Msa0227290-mRNA-1:exon:23817;Parent=Msa0227290-mRNA-1
chr2_1 five_prime_UTR 78099979 78100204 78099979 ID=Msa0227290-mRNA-1:five_prime_utr;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78100205 78100324 78100205 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78100573 78100661 78100573 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78100858 78100888 78100858 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78101903 78102002 78101903 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78104927 78104997 78104927 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78105103 78105246 78105103 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 CDS 78105529 78105594 78105529 ID=Msa0227290-mRNA-1:cds;Parent=Msa0227290-mRNA-1
chr2_1 three_prime_UTR 78105595 78105625 78105595 ID=Msa0227290-mRNA-1:three_prime_utr;Parent=Msa0227290-mRNA-1
chr2_1 three_prime_UTR 78105653 78105812 78105653 ID=Msa0227290-mRNA-1:three_prime_utr;Parent=Msa0227290-mRNA-1
Gene Sequence

>Msa0227290

ATGGAGAGAGAGATAGAGATGAAGCTATCAAAGTTTAAGAGAATTTGTGTGTTTTGTGGTAGTAGCCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAAAGAATTGGTTTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGATTTCCAAGCTGTTTATGATGGTGGTCGACATAGTGATTCCCAAAACACTAATGCCAAGAGAGCTTACTGGTGAAACAGTAGGAGAAGTGAAAGCAGTAGCTGACATGCATCAAAGGAAAGCTGAAATGGCTAGAAATTCTGATGCCTTTATAGCCTTACCAGGTGGGTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTTTTGACTTTCATCGACAAAGCTGTGGAGGAAGGATTCATTAGCCCCACAGCTCGCCATATAATTGTGTCTGCACCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAGTATTTCCCACAGCATGAAAGAGTTGCCTCCAAGCTAAGCTGGGAAAATGAACAGCTAGATTAG

Protein sequence

>Msa0227290

MEREIEMKLSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISKLFMMVVDIVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVSAPTPKELVKNMEEYFPQHERVASKLSWENEQLD*