AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008960 MtrunA17_Chr7g0219291 69.066 653 168 8 3 630 172 815 0.0 911
Msa1008960 MtrunA17_Chr7g0219291 64.948 291 93 3 328 618 35 316 2.22e-123 385
Msa1008960 MtrunA17_Chr7g0219291 72.368 152 38 1 2 149 658 809 1.22e-64 228
Msa1008960 MtrunA17_Chr7g0219181 81.723 476 87 0 156 631 1 476 0.0 795
Msa1008960 MtrunA17_Chr7g0219181 89.333 150 12 1 1 146 317 466 2.01e-88 283
Msa1008960 MtrunA17_Chr7g0219241 74.262 474 119 3 159 632 5 475 0.0 722
Msa1008960 MtrunA17_Chr7g0219241 72.185 151 39 1 2 149 317 467 9.16e-71 237
Msa1008960 MtrunA17_Chr7g0219121 56.584 486 195 10 156 632 1 479 0.0 523
Msa1008960 MtrunA17_Chr7g0219121 58.553 152 57 2 2 149 322 471 4.55e-49 178
Msa1008960 MtrunA17_Chr7g0219211 73.154 298 78 2 157 453 3 299 4.20e-148 432
Msa1008960 MtrunA17_Chr7g0219101 48.566 488 184 11 156 632 1 432 8.12e-138 409
Msa1008960 MtrunA17_Chr7g0219101 58.000 150 61 1 2 149 275 424 4.01e-49 177
Msa1008960 MtrunA17_Chr7g0219191 89.450 218 22 1 174 391 9 225 1.20e-132 388
Msa1008960 MtrunA17_Chr6g0454761 37.481 667 347 19 8 630 302 942 5.02e-127 397
Msa1008960 MtrunA17_Chr6g0454761 41.474 475 243 13 163 630 8 454 7.37e-101 328
Msa1008960 MtrunA17_Chr6g0454761 40.845 142 78 3 5 142 790 929 2.80e-27 117
Msa1008960 MtrunA17_Chr7g0219201 87.745 204 25 0 429 632 1 204 2.28e-118 351
Msa1008960 MtrunA17_Chr7g0219201 72.368 152 38 1 2 149 45 196 2.33e-65 213
Msa1008960 MtrunA17_Chr7g0219331 41.365 498 257 13 145 631 79 552 7.93e-111 344
Msa1008960 MtrunA17_Chr7g0219331 36.986 146 84 4 1 141 395 537 3.37e-23 103
Msa1008960 MtrunA17_Chr7g0219301 42.138 477 241 12 164 629 5 457 1.99e-106 342
Msa1008960 MtrunA17_Chr7g0219301 30.757 647 364 24 1 630 302 881 5.01e-64 227
Msa1008960 MtrunA17_Chr6g0455341 40.166 483 258 12 156 630 1 460 1.83e-102 319
Msa1008960 MtrunA17_Chr6g0455341 35.915 142 89 1 2 141 305 446 3.06e-24 106
Msa1008960 MtrunA17_Chr6g0455361 39.836 487 251 14 156 630 1 457 4.60e-100 313
Msa1008960 MtrunA17_Chr6g0455361 36.429 140 86 2 4 141 305 443 6.64e-24 105
Msa1008960 MtrunA17_Chr7g0219251 73.684 171 45 0 159 329 3 173 5.14e-81 253
Msa1008960 MtrunA17_Chr6g0455351 36.626 486 236 16 156 630 1 425 4.65e-80 260
Msa1008960 MtrunA17_Chr7g0219221 73.418 158 41 1 473 630 2 158 7.28e-79 247
Msa1008960 MtrunA17_Chr7g0219221 73.026 152 38 1 1 149 1 152 8.54e-75 236
Msa1008960 MtrunA17_Chr2g0323511 33.874 493 275 14 163 630 16 482 1.82e-73 244
Msa1008960 MtrunA17_Chr2g0323511 34.965 143 90 2 8 147 333 475 8.30e-21 96.3
Msa1008960 MtrunA17_Chr3g0087901 35.391 486 267 14 163 630 8 464 2.17e-73 243
Msa1008960 MtrunA17_Chr3g0087901 36.029 136 84 2 8 141 316 450 5.77e-16 80.9
Msa1008960 MtrunA17_Chr7g0219881 33.820 479 264 11 165 623 8 453 1.34e-63 217
Msa1008960 MtrunA17_Chr7g0219881 32.857 140 85 3 8 146 321 452 2.35e-14 75.9
Msa1008960 MtrunA17_Chr8g0339641 31.388 497 292 13 163 632 3 477 5.29e-63 216
Msa1008960 MtrunA17_Chr8g0339641 33.793 145 90 3 8 146 320 464 7.21e-17 84.0
Msa1008960 MtrunA17_Chr2g0323471 32.035 462 278 12 180 630 41 477 4.69e-62 214
Msa1008960 MtrunA17_Chr2g0323471 35.664 143 89 2 8 147 328 470 3.43e-19 91.3
Msa1008960 MtrunA17_Chr3g0083761 32.231 484 266 12 165 623 8 454 5.46e-59 205
Msa1008960 MtrunA17_Chr3g0083761 31.655 139 90 3 4 139 309 445 3.60e-12 68.9
Msa1008960 MtrunA17_Chr2g0323481 32.739 449 261 12 197 630 39 461 9.90e-58 201
Msa1008960 MtrunA17_Chr2g0323481 39.568 139 80 3 2 139 310 445 1.16e-16 83.2
Msa1008960 MtrunA17_Chr3g0124341 31.902 489 285 15 164 630 10 472 1.87e-57 201
Msa1008960 MtrunA17_Chr3g0124341 38.806 134 77 3 8 139 326 456 5.10e-17 84.3
Msa1008960 MtrunA17_Chr2g0323421 32.665 499 286 17 151 630 42 509 4.35e-56 198
Msa1008960 MtrunA17_Chr2g0323421 40.714 140 77 5 2 139 358 493 2.81e-15 79.0
Msa1008960 MtrunA17_Chr2g0323501 32.833 466 267 14 184 630 37 475 1.65e-55 196
Msa1008960 MtrunA17_Chr2g0323501 40.000 140 78 5 2 139 324 459 4.34e-16 81.3
Msa1008960 MtrunA17_Chr7g0219351 39.823 226 122 5 233 455 15 229 5.19e-41 149
Msa1008960 MtrunA17_Chr6g0454741 44.737 152 77 3 219 370 12 156 9.20e-33 126
Msa1008960 MtrunA17_Chr7g0219341 41.830 153 77 4 483 630 5 150 4.53e-31 118
Msa1008960 MtrunA17_Chr7g0219341 36.957 138 79 3 9 141 2 136 5.12e-25 101
Msa1008960 MtrunA17_Chr3g0092011 30.070 286 167 8 164 435 4 270 5.09e-29 116
Msa1008960 MtrunA17_Chr2g0323441 39.326 178 93 6 163 329 2 175 3.19e-25 103
Msa1008960 MtrunA17_Chr7g0219311 39.161 143 85 2 473 615 7 147 1.82e-24 99.8
Msa1008960 MtrunA17_Chr7g0219311 35.664 143 88 2 1 140 6 147 2.08e-23 96.7
Msa1008960 MtrunA17_Chr7g0253541 24.405 504 311 17 162 637 3 464 1.91e-22 100
Msa1008960 MtrunA17_Chr8g0386141 23.391 466 309 12 159 622 3 422 4.08e-22 99.8
Msa1008960 MtrunA17_Chr5g0436621 23.579 475 311 18 171 614 14 467 1.49e-21 98.6
Msa1008960 MtrunA17_Chr3g0087401 23.973 438 267 17 218 627 49 448 1.90e-21 97.8
Msa1008960 MtrunA17_Chr4g0054081 23.701 481 305 16 171 630 17 456 7.16e-20 93.2
Msa1008960 MtrunA17_Chr4g0072041 23.431 478 311 16 170 630 21 460 7.35e-20 93.2
Msa1008960 MtrunA17_Chr4g0010381 24.561 456 263 18 182 612 22 421 1.36e-19 92.0
Msa1008960 MtrunA17_Chr4g0010361 25.532 470 275 19 172 620 14 429 2.09e-18 88.2
Msa1008960 MtrunA17_Chr3g0113181 24.945 457 280 17 155 586 4 422 5.75e-18 87.4
Msa1008960 MtrunA17_Chr2g0283361 21.730 474 314 14 163 623 2 431 6.50e-18 87.0
Msa1008960 MtrunA17_Chr3g0132001 24.505 404 262 11 222 622 65 428 7.71e-18 86.7
Msa1008960 MtrunA17_Chr6g0467861 24.646 495 290 19 162 619 46 494 2.09e-17 85.9
Msa1008960 MtrunA17_Chr8g0374641 23.666 431 243 17 182 586 27 397 2.10e-17 85.1
Msa1008960 MtrunA17_Chr4g0053081 25.263 475 262 20 166 612 18 427 5.55e-17 84.0
Msa1008960 MtrunA17_Chr8g0374911 23.128 454 279 16 182 614 48 452 1.55e-16 82.8
Msa1008960 MtrunA17_Chr4g0053061 21.694 484 297 17 156 614 33 459 2.22e-16 82.4
Msa1008960 MtrunA17_Chr4g0010311 26.984 441 238 19 172 586 14 396 2.47e-16 82.0
Msa1008960 MtrunA17_Chr7g0224391 23.171 410 269 14 222 626 67 435 9.92e-16 80.1
Msa1008960 MtrunA17_Chr8g0361771 22.921 445 256 16 162 582 4 385 2.24e-15 79.0
Msa1008960 MtrunA17_Chr3g0134091 24.582 419 245 18 184 581 29 397 3.31e-15 78.6
Msa1008960 MtrunA17_Chr7g0252731 23.810 441 264 15 148 583 6 379 4.69e-15 77.8
Msa1008960 MtrunA17_Chr3g0134121 25.296 423 242 19 187 586 32 403 9.21e-15 77.4
Msa1008960 MtrunA17_Chr8g0359251 25.243 412 235 18 223 612 63 423 1.08e-14 77.0
Msa1008960 MtrunA17_Chr3g0087221 25.813 461 277 19 172 612 14 429 1.42e-14 76.6
Msa1008960 MtrunA17_Chr4g0010121 23.179 453 266 13 182 610 67 461 2.59e-14 75.9
Msa1008960 MtrunA17_Chr3g0134111 23.844 411 258 18 184 581 30 398 2.49e-13 72.8
Msa1008960 MtrunA17_Chr4g0053111 23.770 488 278 15 163 620 12 435 4.74e-13 71.6
Msa1008960 MtrunA17_Chr8g0354371 24.893 466 285 18 181 638 27 435 1.96e-12 69.7
Msa1008960 MtrunA17_Chr2g0278481 23.364 428 240 16 222 622 73 439 3.18e-12 69.3
Msa1008960 MtrunA17_Chr7g0224131 25.581 430 247 18 172 582 14 389 4.61e-12 68.6
Msa1008960 MtrunA17_Chr8g0361781 21.429 476 303 14 161 620 3 423 6.24e-12 68.2
Msa1008960 MtrunA17_Chr3g0092001 39.130 115 60 4 44 151 6 117 7.38e-12 62.8
Msa1008960 MtrunA17_Chr3g0092001 47.500 80 37 2 554 630 40 117 2.66e-11 61.2
Msa1008960 MtrunA17_Chr7g0235531 22.107 484 313 19 161 628 2 437 9.21e-12 67.8
Msa1008960 MtrunA17_Chr7g0253531 21.951 451 291 14 206 630 42 457 1.07e-11 67.4
Msa1008960 MtrunA17_Chr4g0027071 22.764 369 236 11 222 579 68 398 3.39e-11 65.9
Msa1008960 MtrunA17_Chr5g0438701 25.153 163 116 2 8 164 270 432 8.89e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008960 AT5G39050.1 39.203 477 264 15 162 630 9 467 6.75e-92 292
Msa1008960 AT5G39050.1 42.553 141 71 3 8 142 318 454 5.87e-30 124
Msa1008960 AT5G39080.1 39.530 468 254 14 162 620 4 451 7.33e-92 292
Msa1008960 AT5G39080.1 44.604 139 69 6 8 142 314 448 6.19e-25 108
Msa1008960 AT3G29670.1 38.359 451 248 10 182 630 27 449 1.28e-86 278
Msa1008960 AT3G29670.1 38.406 138 82 2 7 141 298 435 1.08e-21 99.0
Msa1008960 AT3G29635.1 36.404 456 263 10 181 633 26 457 1.00e-85 276
Msa1008960 AT3G29635.1 35.417 144 88 3 2 141 298 440 9.17e-20 93.2
Msa1008960 AT3G29590.1 36.534 479 261 13 160 630 5 448 2.03e-83 270
Msa1008960 AT3G29590.1 38.732 142 75 3 9 141 296 434 8.31e-20 93.2
Msa1008960 AT5G39090.1 36.957 460 255 13 175 630 19 447 1.81e-81 265
Msa1008960 AT5G39090.1 38.926 149 76 6 8 147 297 439 3.98e-22 100
Msa1008960 AT3G29680.1 35.463 454 265 8 175 626 16 443 2.36e-78 256
Msa1008960 AT3G29680.1 32.192 146 78 4 8 141 297 433 1.58e-15 80.1
Msa1008960 AT5G61160.1 33.404 470 285 10 163 628 3 448 4.61e-77 253
Msa1008960 AT5G61160.1 34.307 137 87 2 8 141 300 436 2.29e-20 94.7
Msa1008960 AT1G03940.1 32.854 487 276 17 164 630 9 464 1.40e-64 220
Msa1008960 AT1G03940.1 31.056 161 93 3 2 151 307 460 1.70e-17 86.3
Msa1008960 AT1G03495.1 32.865 356 198 14 168 510 15 342 4.41e-42 155
Msa1008960 AT5G23940.1 25.988 481 289 20 163 620 3 439 1.37e-21 99.0
Msa1008960 AT5G57840.1 23.651 482 308 21 163 630 3 438 2.86e-19 91.3
Msa1008960 AT3G29690.1 30.719 153 98 3 479 630 33 178 3.82e-18 83.2
Msa1008960 AT3G29690.1 29.197 137 89 3 8 141 33 164 3.53e-15 74.7
Msa1008960 AT3G29720.1 31.628 215 115 7 260 466 26 216 4.98e-18 84.0
Msa1008960 AT5G41040.2 23.641 423 267 16 217 628 63 440 5.12e-18 87.4
Msa1008960 AT5G41040.1 23.641 423 267 16 217 628 79 456 7.39e-18 87.0
Msa1008960 AT5G67150.1 23.614 487 297 18 171 633 13 448 1.11e-14 77.4
Msa1008960 AT3G48720.1 22.378 429 285 14 197 622 41 424 1.02e-13 74.3
Msa1008960 AT1G65450.1 24.558 452 276 17 195 631 49 450 6.44e-13 71.6
Msa1008960 AT3G47170.1 23.235 340 228 11 203 538 57 367 4.09e-12 69.3
Msa1008960 AT5G07850.1 22.321 448 288 16 156 586 1 405 5.80e-12 68.9
Msa1008960 AT5G63560.1 21.909 461 302 16 167 622 13 420 1.72e-11 67.0

Find 123 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACCAAATAACTATTT+TGG 0.140915 7_1:+9694249 Msa1008960:CDS
CCAATACCAAGTAACTTTAT+TGG 0.177107 7_1:+9691380 Msa1008960:CDS
AGCAAATGGTATTATCAAAA+TGG 0.196221 7_1:+9694055 Msa1008960:CDS
CAATTTCCAAAATAGTTATT+TGG 0.203936 7_1:-9694255 None:intergenic
CGAACTGAGTCTTCGAGTTT+TGG 0.230080 7_1:-9693991 None:intergenic
GAGAGTGAAGATTTGAGAAT+TGG 0.258335 7_1:-9693436 None:intergenic
ATATAATTCTTTGATAAATC+AGG 0.279088 7_1:+9694425 Msa1008960:CDS
TAACCTTGATCTGCAATCTA+TGG 0.291297 7_1:-9694220 None:intergenic
TTTGGGGTATGTTGGATTAT+TGG 0.292562 7_1:-9693523 None:intergenic
GAAGGGTGTGATTGGGAACT+TGG 0.294736 7_1:-9693391 None:intergenic
CTTTAGCTGGTAAGATCATT+TGG 0.302896 7_1:+9693482 Msa1008960:CDS
AACACTTCCTTTATCTCATA+TGG 0.312786 7_1:+9693222 Msa1008960:CDS
CCAAAATAGTTATTTGGTAT+TGG 0.315354 7_1:-9694249 None:intergenic
GGTGTTTATGAGACTGATTT+TGG 0.320974 7_1:+9691617 Msa1008960:CDS
GGTGTTTATGAGACTGATTT+TGG 0.320974 7_1:+9694486 Msa1008960:CDS
ACTTTATTGGAAACTGTGTT+TGG 0.321960 7_1:+9691393 Msa1008960:CDS
TGAGAATTGGAACAAGCTTT+TGG 0.323976 7_1:-9693423 None:intergenic
TCTTTGATAAATCAGGGATT+TGG 0.328380 7_1:+9694432 Msa1008960:CDS
AATGTAACACCAAGTTCATT+TGG 0.336977 7_1:-9693883 None:intergenic
GCAAGGAAACACCATCATTT+GGG 0.342122 7_1:-9693540 None:intergenic
AGGATGTTCCCAAAGGAAAA+AGG 0.350929 7_1:+9693934 Msa1008960:CDS
CTTTATTGGAAACTGTGTTT+GGG 0.353721 7_1:+9691394 Msa1008960:CDS
CCAATAAAGTTACTTGGTAT+TGG 0.356036 7_1:-9691380 None:intergenic
AGCAAGGAAACACCATCATT+TGG 0.361755 7_1:-9693541 None:intergenic
CAAAGTTGGTGATTCTTCAT+TGG 0.372965 7_1:-9693815 None:intergenic
TGTTACGCAAAAGCGATTCA+TGG 0.376237 7_1:+9694159 Msa1008960:CDS
AGAAGAAAGAAGGGTGTGAT+TGG 0.380612 7_1:-9693399 None:intergenic
AACCATGTTCATCAAAGCTT+GGG 0.382728 7_1:+9693765 Msa1008960:CDS
AGTTAGAACCTCTATTCAAC+AGG 0.385308 7_1:+9693845 Msa1008960:CDS
TCTTTGATAAATGAAGGATT+TGG 0.389495 7_1:+9691563 Msa1008960:CDS
ACACACCATGCTATTCTTGA+TGG 0.393789 7_1:+9693733 Msa1008960:CDS
TTTCAAGGATCTATTAATGA+TGG 0.395238 7_1:+9694393 Msa1008960:CDS
GGATCTATTAATGATGGGTT+TGG 0.397346 7_1:+9694399 Msa1008960:CDS
TATAATTCTTTGATAAATGA+AGG 0.398505 7_1:+9691557 Msa1008960:CDS
ATAAAGATGATAAATGATAA+TGG 0.401064 7_1:+9694366 Msa1008960:CDS
GTAGATAGAGGTTTAATCAT+TGG 0.402882 7_1:+9694543 Msa1008960:CDS
TTGAAAGCCATATGAGATAA+AGG 0.405137 7_1:-9693229 None:intergenic
TAGAGGTTTAATCATTGGTT+TGG 0.406679 7_1:+9694548 Msa1008960:CDS
CAACCATGTTCATCAAAGCT+TGG 0.418659 7_1:+9693764 Msa1008960:CDS
CACCATCATTTGGGGTATGT+TGG 0.420080 7_1:-9693531 None:intergenic
CTTCGACATCCTATGGCTAA+AGG 0.421795 7_1:+9693333 Msa1008960:CDS
TAGAGGTTTAACCATTGGTT+TGG 0.430246 7_1:+9691679 Msa1008960:CDS
GTGGCGGGATCTAATAGATT+TGG 0.431741 7_1:+9691596 Msa1008960:CDS
GATTATTGGTTGTTGAGATT+CGG 0.435376 7_1:-9693509 None:intergenic
GGGAATGGTGGGGTTGAAGT+TGG 0.437053 7_1:+9691716 Msa1008960:CDS
GCAGAGAGCAAAGATGAAAA+TGG 0.440966 7_1:+9694570 Msa1008960:CDS
ATGATTTCCCTGTTGAATAG+AGG 0.441428 7_1:-9693853 None:intergenic
TGTTCTTAATAAGTGTGTAA+TGG 0.445189 7_1:+9694611 Msa1008960:CDS
AACCTTGATCTGCAATCTAT+GGG 0.445561 7_1:-9694219 None:intergenic
ATGTAACACCAAGTTCATTT+GGG 0.446809 7_1:-9693882 None:intergenic
GCAAATGGTATTATCAAAAT+GGG 0.448722 7_1:+9694056 Msa1008960:CDS
GGTTTGGCAGAGAGCAAAGA+TGG 0.455777 7_1:+9691695 Msa1008960:CDS
TAGAAGAAAACACGTTCTAC+TGG 0.455942 7_1:-9693361 None:intergenic
TCCCCATAGATTGCAGATCA+AGG 0.465293 7_1:+9694217 Msa1008960:CDS
CAGTTTCCAATAAAGTTACT+TGG 0.468590 7_1:-9691386 None:intergenic
ATAAAGTTACTTGGTATTGG+TGG 0.474612 7_1:-9691377 None:intergenic
ATCAAAGACCCAAATGAACT+TGG 0.475521 7_1:+9693874 Msa1008960:CDS
GAAGAAAGAAGGGTGTGATT+GGG 0.478690 7_1:-9693398 None:intergenic
CTTCATCGATACACAACCAT+TGG 0.478861 7_1:+9691421 Msa1008960:CDS
TTGGATTTCATAAAAGAAGA+TGG 0.479620 7_1:+9691440 Msa1008960:CDS
AAGGGTGTGATTGGGAACTT+GGG 0.480787 7_1:-9693390 None:intergenic
TATAATTCTTTGATAAATCA+GGG 0.481614 7_1:+9694426 Msa1008960:CDS
GAACACTTTCTCCCTTTAGC+TGG 0.481894 7_1:+9693469 Msa1008960:CDS
CAAATGATCTTACCAGCTAA+AGG 0.483763 7_1:-9693481 None:intergenic
GTGGATAGAGGTTTAACCAT+TGG 0.488225 7_1:+9691674 Msa1008960:CDS
TCACTTTCTTCGACATCCTA+TGG 0.488257 7_1:+9693326 Msa1008960:CDS
TTTGAACAAGATAAAGCAAA+TGG 0.489572 7_1:+9694041 Msa1008960:CDS
AAATAGTTATTTGGTATTGG+AGG 0.490971 7_1:-9694246 None:intergenic
GAGCAACATTGATGTGTTCA+TGG 0.496515 7_1:-9693270 None:intergenic
GAGATGGTGTCGGTAGATAG+AGG 0.497638 7_1:+9694531 Msa1008960:CDS
AAATGATCTTACCAGCTAAA+GGG 0.506511 7_1:-9693480 None:intergenic
TTCAAGGATCTATTAATGAT+GGG 0.510130 7_1:+9694394 Msa1008960:CDS
AGCGATTCATGGAGCTGCTA+AGG 0.521717 7_1:+9694170 Msa1008960:CDS
ACAAAGGTTGATAAAGATTG+TGG 0.527106 7_1:-9694111 None:intergenic
ATCCAACATACCCCAAATGA+TGG 0.527410 7_1:+9693529 Msa1008960:CDS
AGAGCAAAGATGGGAATGGT+GGG 0.535501 7_1:+9691705 Msa1008960:CDS
GAAAATGGTGGGGTTGAAGT+TGG 0.538497 7_1:+9694585 Msa1008960:CDS
GAGAGCAAAGATGGGAATGG+TGG 0.542971 7_1:+9691704 Msa1008960:CDS
CTTGAAGGGGCTATTAATGA+CGG 0.544900 7_1:+9691524 Msa1008960:intron
TTGAAGGGGCTATTAATGAC+GGG 0.545356 7_1:+9691525 Msa1008960:intron
TCTAACTCAGGTAACAAAGT+TGG 0.547505 7_1:-9693829 None:intergenic
CTGGATACACCTTTAGCCAT+AGG 0.549736 7_1:-9693342 None:intergenic
TAACCTTGCTCTGCAATCTA+CGG 0.549902 7_1:-9691351 None:intergenic
GAGATAGTATCGGTGGATAG+AGG 0.550679 7_1:+9691662 Msa1008960:CDS
GTGTGATTGGGAACTTGGGA+GGG 0.559809 7_1:-9693386 None:intergenic
GTGGTTTGCGTTGATGATTG+AGG 0.561601 7_1:-9693292 None:intergenic
TTGAATAGAGGTTCTAACTC+AGG 0.567057 7_1:-9693841 None:intergenic
TTTGCTCTCTGCCAAACCAA+TGG 0.567957 7_1:-9691690 None:intergenic
CTAAAGGGAGAAAGTGTTCG+AGG 0.579709 7_1:-9693465 None:intergenic
AGAGCAAAGATGAAAATGGT+GGG 0.589440 7_1:+9694574 Msa1008960:CDS
AGCCCAAGCTTTGATGAACA+TGG 0.596193 7_1:-9693767 None:intergenic
GTTTGGCAGAGAGCAAAGAT+GGG 0.598479 7_1:+9691696 Msa1008960:CDS
TCACCGTAGATTGCAGAGCA+AGG 0.598513 7_1:+9691348 Msa1008960:CDS
TCTTCTTCTAGAAAGTCTGA+TGG 0.602010 7_1:-9694306 None:intergenic
GTTGCACTGAGATCTTATCC+AGG 0.604812 7_1:+9693914 Msa1008960:CDS
GTTGGACTCTGCAATGAGCA+AGG 0.605899 7_1:-9693557 None:intergenic
GCAGAGAGCAAAGATGGGAA+TGG 0.607028 7_1:+9691701 Msa1008960:CDS
TTTATTGGAAACTGTGTTTG+GGG 0.609435 7_1:+9691395 Msa1008960:CDS
ATGGTGTGTACTAGTTCCAA+TGG 0.614235 7_1:-9693719 None:intergenic
AAAAGTCGAGATAGTATCGG+TGG 0.614890 7_1:+9691655 Msa1008960:CDS
GGTGTGATTGGGAACTTGGG+AGG 0.616734 7_1:-9693387 None:intergenic
ATTGGTTGTTGAGATTCGGA+AGG 0.623030 7_1:-9693505 None:intergenic
GAGAGCAAAGATGAAAATGG+TGG 0.623496 7_1:+9694573 Msa1008960:CDS
GAAAGTGAGAGGGATTGTTG+TGG 0.628565 7_1:-9693311 None:intergenic
GAATCTGCGGATTCCAAATG+CGG 0.634455 7_1:-9693643 None:intergenic
TTGCTTAATTGACAGTAGAG+AGG 0.637113 7_1:+9694665 Msa1008960:CDS
GGATGTCGAAGAAAGTGAGA+GGG 0.639274 7_1:-9693321 None:intergenic
AATTGAAGCAAAAGAATCTG+CGG 0.642981 7_1:-9693656 None:intergenic
TTATTGGAAACTGTGTTTGG+GGG 0.644646 7_1:+9691396 Msa1008960:CDS
CTTATCCAGGATGTTCCCAA+AGG 0.644668 7_1:+9693927 Msa1008960:CDS
GACTTGATAGAAATCAACGT+TGG 0.647359 7_1:-9693575 None:intergenic
AGGATGTCGAAGAAAGTGAG+AGG 0.651712 7_1:-9693322 None:intergenic
ATAAAGATGATAAACGAGAA+CGG 0.651921 7_1:+9691497 Msa1008960:CDS
TAAAGGGAGAAAGTGTTCGA+GGG 0.656830 7_1:-9693464 None:intergenic
CAAGGAAACACCATCATTTG+GGG 0.665742 7_1:-9693539 None:intergenic
TTCAAGCGTGAGTTTGAACG+TGG 0.666208 7_1:-9694016 None:intergenic
TCAGACTTTCTAGAAGAAGA+CGG 0.679151 7_1:+9694309 Msa1008960:CDS
GAGCAAAGATGGGAATGGTG+GGG 0.692482 7_1:+9691706 Msa1008960:CDS
ACCTTGATCTGCAATCTATG+GGG 0.692544 7_1:-9694218 None:intergenic
CGAGACAAAGAAGCTTCATG+TGG 0.693566 7_1:-9693610 None:intergenic
GTTAGAACCTCTATTCAACA+GGG 0.701022 7_1:+9693846 Msa1008960:CDS
GAGCAAAGATGAAAATGGTG+GGG 0.708424 7_1:+9694575 Msa1008960:CDS
ATAAGCACAAGTGAGAACAA+AGG 0.714865 7_1:-9694127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATCAAATCTAAAA+GGG - chr7_1:9691895-9691914 None:intergenic 10.0%
!! AATATATAATCAAATCTAAA+AGG - chr7_1:9691896-9691915 None:intergenic 10.0%
!!! CAAACATATTTTAAAAAATT+TGG - chr7_1:9692173-9692192 None:intergenic 10.0%
!!! ATTTTTAATTGAATACATTT+TGG + chr7_1:9692793-9692812 Msa1008960:intron 10.0%
!! TATAATTCTTTGATAAATGA+AGG + chr7_1:9691557-9691576 Msa1008960:CDS 15.0%
!! AAGCATAACTTATTAAAATT+AGG - chr7_1:9691929-9691948 None:intergenic 15.0%
!! AAAGAAAAAGAAAATAACAA+AGG - chr7_1:9691979-9691998 None:intergenic 15.0%
!! ATTGTAATATACATAAAGTT+TGG - chr7_1:9692609-9692628 None:intergenic 15.0%
!! ATAAAGATGATAAATGATAA+TGG + chr7_1:9694366-9694385 Msa1008960:CDS 15.0%
!! ATATAATTCTTTGATAAATC+AGG + chr7_1:9694425-9694444 Msa1008960:CDS 15.0%
!! TATAATTCTTTGATAAATCA+GGG + chr7_1:9694426-9694445 Msa1008960:CDS 15.0%
!! GAAAAAGAAAATAACAAAGT+GGG - chr7_1:9692074-9692093 None:intergenic 20.0%
!! AGAAAAAGAAAATAACAAAG+TGG - chr7_1:9691977-9691996 None:intergenic 20.0%
!!! ACTCGATCATTTTTTTTAAA+AGG + chr7_1:9692209-9692228 Msa1008960:intron 20.0%
!!! CTCGATCATTTTTTTTAAAA+GGG + chr7_1:9692210-9692229 Msa1008960:intron 20.0%
!! TAGAAAACAAATGTATAGAA+AGG + chr7_1:9692272-9692291 Msa1008960:intron 20.0%
!! AGAAAACAAATGTATAGAAA+GGG + chr7_1:9692273-9692292 Msa1008960:intron 20.0%
!! TCAATTAGTTAAATTTCCAA+AGG - chr7_1:9692347-9692366 None:intergenic 20.0%
!! GAATATATTGTACAATTAGA+AGG + chr7_1:9692514-9692533 Msa1008960:intron 20.0%
!! TAAAAATAAAAAACTGAGCA+AGG - chr7_1:9692780-9692799 None:intergenic 20.0%
!! TGTCAAATGGAAATTATATT+CGG - chr7_1:9693026-9693045 None:intergenic 20.0%
!! AAATGATAAGACAGAAAAAA+TGG - chr7_1:9693104-9693123 None:intergenic 20.0%
!!! AAAACCACTTTTTTGAAAAA+GGG - chr7_1:9693698-9693717 None:intergenic 20.0%
!!! AAAAACCACTTTTTTGAAAA+AGG - chr7_1:9693699-9693718 None:intergenic 20.0%
!! CAATTTCCAAAATAGTTATT+TGG - chr7_1:9694258-9694277 None:intergenic 20.0%
!! TCTTCTTTTATGAAATCCAA+TGG - chr7_1:9691440-9691459 None:intergenic 25.0%
! TTGGATTTCATAAAAGAAGA+TGG + chr7_1:9691440-9691459 Msa1008960:CDS 25.0%
! ATAAAGATGATAAACGAGAA+CGG + chr7_1:9691497-9691516 Msa1008960:CDS 25.0%
! TCTTTGATAAATGAAGGATT+TGG + chr7_1:9691563-9691582 Msa1008960:CDS 25.0%
! AAAAAAAGTCGAGATAGTAT+CGG + chr7_1:9691652-9691671 Msa1008960:CDS 25.0%
! ACTATGCTTTAATTGATTGT+TGG + chr7_1:9691793-9691812 Msa1008960:intron 25.0%
! GAAAAAGAAAATAACAAAGG+AGG - chr7_1:9691976-9691995 None:intergenic 25.0%
!!! ACATTTGTTTTCTACAATAG+TGG - chr7_1:9692266-9692285 None:intergenic 25.0%
! TTTGTGATGAAATATGTTCA+TGG + chr7_1:9692461-9692480 Msa1008960:intron 25.0%
! TTGTGATGAAATATGTTCAT+GGG + chr7_1:9692462-9692481 Msa1008960:intron 25.0%
!! ACTACAAATGTAAAGGTATA+GGG - chr7_1:9692560-9692579 None:intergenic 25.0%
!! AACTACAAATGTAAAGGTAT+AGG - chr7_1:9692561-9692580 None:intergenic 25.0%
!! GTATTACAACTGATTTCTAT+GGG - chr7_1:9692587-9692606 None:intergenic 25.0%
! AAAAACTGACCAAAAAAACT+AGG - chr7_1:9692987-9693006 None:intergenic 25.0%
! ATGGAAATTATATTCGGTAA+TGG - chr7_1:9693020-9693039 None:intergenic 25.0%
! AATTTCCATTTGACAATCTA+AGG + chr7_1:9693031-9693050 Msa1008960:intron 25.0%
! TTTAACCTTAGATTGTCAAA+TGG - chr7_1:9693039-9693058 None:intergenic 25.0%
!!! ATAACCCTTTTTCAAAAAAG+TGG + chr7_1:9693691-9693710 Msa1008960:CDS 25.0%
! TTTGAACAAGATAAAGCAAA+TGG + chr7_1:9694041-9694060 Msa1008960:CDS 25.0%
! AGCAAATGGTATTATCAAAA+TGG + chr7_1:9694055-9694074 Msa1008960:CDS 25.0%
! GCAAATGGTATTATCAAAAT+GGG + chr7_1:9694056-9694075 Msa1008960:CDS 25.0%
!! AAATAGTTATTTGGTATTGG+AGG - chr7_1:9694249-9694268 None:intergenic 25.0%
! CCAAAATAGTTATTTGGTAT+TGG - chr7_1:9694252-9694271 None:intergenic 25.0%
!! CCAATACCAAATAACTATTT+TGG + chr7_1:9694249-9694268 Msa1008960:CDS 25.0%
!!! ACTATTTTGGAAATTGTGTT+TGG + chr7_1:9694262-9694281 Msa1008960:CDS 25.0%
!!! CTATTTTGGAAATTGTGTTT+GGG + chr7_1:9694263-9694282 Msa1008960:CDS 25.0%
!!! TATTTTGGAAATTGTGTTTG+GGG + chr7_1:9694264-9694283 Msa1008960:CDS 25.0%
!!! AATGATAATGGTGTTTTTCA+AGG + chr7_1:9694378-9694397 Msa1008960:CDS 25.0%
! TTTCAAGGATCTATTAATGA+TGG + chr7_1:9694393-9694412 Msa1008960:CDS 25.0%
! TTCAAGGATCTATTAATGAT+GGG + chr7_1:9694394-9694413 Msa1008960:CDS 25.0%
! TGTTCTTAATAAGTGTGTAA+TGG + chr7_1:9694611-9694630 Msa1008960:CDS 25.0%
!!! TTTAGCACTTTCTTTTTTGA+AGG + chr7_1:9694639-9694658 Msa1008960:CDS 25.0%
! ATAAAGTTACTTGGTATTGG+TGG - chr7_1:9691380-9691399 None:intergenic 30.0%
CCAATAAAGTTACTTGGTAT+TGG - chr7_1:9691383-9691402 None:intergenic 30.0%
CCAATACCAAGTAACTTTAT+TGG + chr7_1:9691380-9691399 Msa1008960:CDS 30.0%
CAGTTTCCAATAAAGTTACT+TGG - chr7_1:9691389-9691408 None:intergenic 30.0%
ACTTTATTGGAAACTGTGTT+TGG + chr7_1:9691393-9691412 Msa1008960:CDS 30.0%
CTTTATTGGAAACTGTGTTT+GGG + chr7_1:9691394-9691413 Msa1008960:CDS 30.0%
TTTATTGGAAACTGTGTTTG+GGG + chr7_1:9691395-9691414 Msa1008960:CDS 30.0%
!! AATGAAGGATTTGGAGTTTT+TGG + chr7_1:9691572-9691591 Msa1008960:CDS 30.0%
!! TTTATGAGACTGATTTTGGT+TGG + chr7_1:9691621-9691640 Msa1008960:CDS 30.0%
!!! TTATGAGACTGATTTTGGTT+GGG + chr7_1:9691622-9691641 Msa1008960:CDS 30.0%
!!! GATACTATCTCGACTTTTTT+TGG - chr7_1:9691653-9691672 None:intergenic 30.0%
TGTTCTTAATAAGCACGTAA+TGG + chr7_1:9691742-9691761 Msa1008960:intron 30.0%
! TTTAGCAATTTGTTTCTCGA+AGG + chr7_1:9691770-9691789 Msa1008960:intron 30.0%
GCAATGTGATAGATAATAAG+AGG + chr7_1:9691824-9691843 Msa1008960:intron 30.0%
TGTGATAGATAATAAGAGGT+CGG + chr7_1:9691828-9691847 Msa1008960:intron 30.0%
CAAATGTATAGAAAGGGAAA+AGG + chr7_1:9692279-9692298 Msa1008960:intron 30.0%
! CTATGTTGGATTTTCGAATA+TGG - chr7_1:9692401-9692420 None:intergenic 30.0%
TGTGATGAAATATGTTCATG+GGG + chr7_1:9692463-9692482 Msa1008960:intron 30.0%
GGGTAAAACTACAAATGTAA+AGG - chr7_1:9692567-9692586 None:intergenic 30.0%
! GGTATTACAACTGATTTCTA+TGG - chr7_1:9692588-9692607 None:intergenic 30.0%
GAAATAGCCATGTTATATGT+GGG - chr7_1:9692646-9692665 None:intergenic 30.0%
TGAAATAGCCATGTTATATG+TGG - chr7_1:9692647-9692666 None:intergenic 30.0%
AACGAACCTTTCTTAGAATA+TGG + chr7_1:9692669-9692688 Msa1008960:intron 30.0%
ACGAACCTTTCTTAGAATAT+GGG + chr7_1:9692670-9692689 Msa1008960:intron 30.0%
AACACTTCCTTTATCTCATA+TGG + chr7_1:9693222-9693241 Msa1008960:CDS 30.0%
TTGAAAGCCATATGAGATAA+AGG - chr7_1:9693232-9693251 None:intergenic 30.0%
AAATGATCTTACCAGCTAAA+GGG - chr7_1:9693483-9693502 None:intergenic 30.0%
! GATTATTGGTTGTTGAGATT+CGG - chr7_1:9693512-9693531 None:intergenic 30.0%
AATTGAAGCAAAAGAATCTG+CGG - chr7_1:9693659-9693678 None:intergenic 30.0%
! CAAAAAAGTGGTTTTTCCAT+TGG + chr7_1:9693703-9693722 Msa1008960:CDS 30.0%
! ATTTTCCATCAAGAATAGCA+TGG - chr7_1:9693741-9693760 None:intergenic 30.0%
ATGTAACACCAAGTTCATTT+GGG - chr7_1:9693885-9693904 None:intergenic 30.0%
AATGTAACACCAAGTTCATT+TGG - chr7_1:9693886-9693905 None:intergenic 30.0%
!! ACAAAGGTTGATAAAGATTG+TGG - chr7_1:9694114-9694133 None:intergenic 30.0%
!! ATTTTGGAAATTGTGTTTGG+GGG + chr7_1:9694265-9694284 Msa1008960:CDS 30.0%
TCTTTGATAAATCAGGGATT+TGG + chr7_1:9694432-9694451 Msa1008960:CDS 30.0%
!! AATCAGGGATTTGGTATTTT+TGG + chr7_1:9694441-9694460 Msa1008960:CDS 30.0%
!! TTTATGAGACTGATTTTGGT+TGG + chr7_1:9691621-9691640 Msa1008960:CDS 30.0%
!!! TTATGAGACTGATTTTGGTT+GGG + chr7_1:9691622-9691641 Msa1008960:CDS 30.0%
GTAGATAGAGGTTTAATCAT+TGG + chr7_1:9694543-9694562 Msa1008960:CDS 30.0%
! TAGAGGTTTAATCATTGGTT+TGG + chr7_1:9694548-9694567 Msa1008960:CDS 30.0%
!! CAAAAAAGAAAGTGCTAAAG+AGG - chr7_1:9694638-9694657 None:intergenic 30.0%
TTATTGGAAACTGTGTTTGG+GGG + chr7_1:9691396-9691415 Msa1008960:CDS 35.0%
!! GGTGTTTATGAGACTGATTT+TGG + chr7_1:9691617-9691636 Msa1008960:CDS 35.0%
!!! TATGAGACTGATTTTGGTTG+GGG + chr7_1:9691623-9691642 Msa1008960:CDS 35.0%
! TAGAGGTTTAACCATTGGTT+TGG + chr7_1:9691679-9691698 Msa1008960:CDS 35.0%
GTGATAGATAATAAGAGGTC+GGG + chr7_1:9691829-9691848 Msa1008960:intron 35.0%
! TCATGTGGTTGGATCTTTTT+AGG + chr7_1:9691853-9691872 Msa1008960:intron 35.0%
! CATGTGGTTGGATCTTTTTA+GGG + chr7_1:9691854-9691873 Msa1008960:intron 35.0%
TTGAGTCTATCATTGTGTTG+TGG + chr7_1:9692235-9692254 Msa1008960:intron 35.0%
TATAGAAAGGGAAAAGGTTC+CGG + chr7_1:9692285-9692304 Msa1008960:intron 35.0%
TCTAAGTAACAACCTTCAAC+CGG - chr7_1:9692307-9692326 None:intergenic 35.0%
! GGTTGTTACTTAGAACCATT+TGG + chr7_1:9692313-9692332 Msa1008960:intron 35.0%
CCAAAGGATTCAATTCCAAA+TGG - chr7_1:9692331-9692350 None:intergenic 35.0%
! CCATTTGGAATTGAATCCTT+TGG + chr7_1:9692328-9692347 Msa1008960:intron 35.0%
! AAGCAACAACTTTTCAACGA+TGG - chr7_1:9692372-9692391 None:intergenic 35.0%
TTTCAACAGTTGCACTATGT+TGG - chr7_1:9692415-9692434 None:intergenic 35.0%
! TGAGTCCCATATTCTAAGAA+AGG - chr7_1:9692678-9692697 None:intergenic 35.0%
GGAAAACTCTATGATTGCAA+GGG - chr7_1:9692759-9692778 None:intergenic 35.0%
AGGAAAACTCTATGATTGCA+AGG - chr7_1:9692760-9692779 None:intergenic 35.0%
!!! GCAAGTGTACCTAGTTTTTT+TGG + chr7_1:9692975-9692994 Msa1008960:intron 35.0%
TAGAAGAAAACACGTTCTAC+TGG - chr7_1:9693364-9693383 None:intergenic 35.0%
!! GCTTTTGGAAGAAGAAAGAA+GGG - chr7_1:9693411-9693430 None:intergenic 35.0%
!! AGCTTTTGGAAGAAGAAAGA+AGG - chr7_1:9693412-9693431 None:intergenic 35.0%
! TGAGAATTGGAACAAGCTTT+TGG - chr7_1:9693426-9693445 None:intergenic 35.0%
GAGAGTGAAGATTTGAGAAT+TGG - chr7_1:9693439-9693458 None:intergenic 35.0%
CAAATGATCTTACCAGCTAA+AGG - chr7_1:9693484-9693503 None:intergenic 35.0%
CTTTAGCTGGTAAGATCATT+TGG + chr7_1:9693482-9693501 Msa1008960:CDS 35.0%
! TTTGGGGTATGTTGGATTAT+TGG - chr7_1:9693526-9693545 None:intergenic 35.0%
GACTTGATAGAAATCAACGT+TGG - chr7_1:9693578-9693597 None:intergenic 35.0%
! TCGTTCTTTTATACCGCATT+TGG + chr7_1:9693630-9693649 Msa1008960:CDS 35.0%
AACCATGTTCATCAAAGCTT+GGG + chr7_1:9693765-9693784 Msa1008960:CDS 35.0%
!! CAAAGTTGGTGATTCTTCAT+TGG - chr7_1:9693818-9693837 None:intergenic 35.0%
TCTAACTCAGGTAACAAAGT+TGG - chr7_1:9693832-9693851 None:intergenic 35.0%
! TTGAATAGAGGTTCTAACTC+AGG - chr7_1:9693844-9693863 None:intergenic 35.0%
AGTTAGAACCTCTATTCAAC+AGG + chr7_1:9693845-9693864 Msa1008960:CDS 35.0%
GTTAGAACCTCTATTCAACA+GGG + chr7_1:9693846-9693865 Msa1008960:CDS 35.0%
ATGATTTCCCTGTTGAATAG+AGG - chr7_1:9693856-9693875 None:intergenic 35.0%
ATCAAAGACCCAAATGAACT+TGG + chr7_1:9693874-9693893 Msa1008960:CDS 35.0%
! GTTCGTTTCCTTTTTCCTTT+GGG - chr7_1:9693945-9693964 None:intergenic 35.0%
! TGTTCGTTTCCTTTTTCCTT+TGG - chr7_1:9693946-9693965 None:intergenic 35.0%
ATAAGCACAAGTGAGAACAA+AGG - chr7_1:9694130-9694149 None:intergenic 35.0%
AACCTTGATCTGCAATCTAT+GGG - chr7_1:9694222-9694241 None:intergenic 35.0%
TAACCTTGATCTGCAATCTA+TGG - chr7_1:9694223-9694242 None:intergenic 35.0%
! TCTTCTTCTAGAAAGTCTGA+TGG - chr7_1:9694309-9694328 None:intergenic 35.0%
! TCAGACTTTCTAGAAGAAGA+CGG + chr7_1:9694309-9694328 Msa1008960:CDS 35.0%
!! GGATCTATTAATGATGGGTT+TGG + chr7_1:9694399-9694418 Msa1008960:CDS 35.0%
!!! GGATTTGGTATTTTTGGAGT+GGG + chr7_1:9694447-9694466 Msa1008960:CDS 35.0%
!!! GATTTGGTATTTTTGGAGTG+GGG + chr7_1:9694448-9694467 Msa1008960:CDS 35.0%
!!! ATTTGGTATTTTTGGAGTGG+GGG + chr7_1:9694449-9694468 Msa1008960:CDS 35.0%
!! GGTGTTTATGAGACTGATTT+TGG + chr7_1:9691617-9691636 Msa1008960:CDS 35.0%
!!! TATGAGACTGATTTTGGTTG+GGG + chr7_1:9691623-9691642 Msa1008960:CDS 35.0%
AGAGCAAAGATGAAAATGGT+GGG + chr7_1:9694574-9694593 Msa1008960:CDS 35.0%
TTGCTTAATTGACAGTAGAG+AGG + chr7_1:9694665-9694684 Msa1008960:CDS 35.0%
TAACCTTGCTCTGCAATCTA+CGG - chr7_1:9691354-9691373 None:intergenic 40.0%
CTTCATCGATACACAACCAT+TGG + chr7_1:9691421-9691440 Msa1008960:CDS 40.0%
CTTGAAGGGGCTATTAATGA+CGG + chr7_1:9691524-9691543 Msa1008960:intron 40.0%
TTGAAGGGGCTATTAATGAC+GGG + chr7_1:9691525-9691544 Msa1008960:intron 40.0%
!! AGGATTTGGAGTTTTTGGAG+TGG + chr7_1:9691577-9691596 Msa1008960:CDS 40.0%
!!! ATTTGGAGTTTTTGGAGTGG+CGG + chr7_1:9691580-9691599 Msa1008960:CDS 40.0%
! AAAAGTCGAGATAGTATCGG+TGG + chr7_1:9691655-9691674 Msa1008960:CDS 40.0%
GTGGATAGAGGTTTAACCAT+TGG + chr7_1:9691674-9691693 Msa1008960:CDS 40.0%
TATGGTGCCCACATATAACA+TGG + chr7_1:9692636-9692655 Msa1008960:intron 40.0%
AAGCTCACGTGGAAAATATG+AGG - chr7_1:9692731-9692750 None:intergenic 40.0%
AAAGATGAGAGAGACATGTG+TGG - chr7_1:9693147-9693166 None:intergenic 40.0%
GAGCAACATTGATGTGTTCA+TGG - chr7_1:9693273-9693292 None:intergenic 40.0%
TCACTTTCTTCGACATCCTA+TGG + chr7_1:9693326-9693345 Msa1008960:CDS 40.0%
! GAAGAAAGAAGGGTGTGATT+GGG - chr7_1:9693401-9693420 None:intergenic 40.0%
! AGAAGAAAGAAGGGTGTGAT+TGG - chr7_1:9693402-9693421 None:intergenic 40.0%
!! TAAAGGGAGAAAGTGTTCGA+GGG - chr7_1:9693467-9693486 None:intergenic 40.0%
ATTGGTTGTTGAGATTCGGA+AGG - chr7_1:9693508-9693527 None:intergenic 40.0%
ATCCAACATACCCCAAATGA+TGG + chr7_1:9693529-9693548 Msa1008960:CDS 40.0%
CAAGGAAACACCATCATTTG+GGG - chr7_1:9693542-9693561 None:intergenic 40.0%
GCAAGGAAACACCATCATTT+GGG - chr7_1:9693543-9693562 None:intergenic 40.0%
AGCAAGGAAACACCATCATT+TGG - chr7_1:9693544-9693563 None:intergenic 40.0%
ATGGTGTGTACTAGTTCCAA+TGG - chr7_1:9693722-9693741 None:intergenic 40.0%
ACACACCATGCTATTCTTGA+TGG + chr7_1:9693733-9693752 Msa1008960:CDS 40.0%
CAACCATGTTCATCAAAGCT+TGG + chr7_1:9693764-9693783 Msa1008960:CDS 40.0%
!! TTTTTCCTTTGGGAACATCC+TGG - chr7_1:9693935-9693954 None:intergenic 40.0%
AGGATGTTCCCAAAGGAAAA+AGG + chr7_1:9693934-9693953 Msa1008960:CDS 40.0%
TGTTACGCAAAAGCGATTCA+TGG + chr7_1:9694159-9694178 Msa1008960:CDS 40.0%
ACCTTGATCTGCAATCTATG+GGG - chr7_1:9694221-9694240 None:intergenic 40.0%
!!! GGGATTTGGTATTTTTGGAG+TGG + chr7_1:9694446-9694465 Msa1008960:CDS 40.0%
!!! TTTGGTATTTTTGGAGTGGG+GGG + chr7_1:9694450-9694469 Msa1008960:CDS 40.0%
AAAAAAGGTGGAGATGGTGT+CGG + chr7_1:9694521-9694540 Msa1008960:CDS 40.0%
GCAGAGAGCAAAGATGAAAA+TGG + chr7_1:9694570-9694589 Msa1008960:CDS 40.0%
GAGAGCAAAGATGAAAATGG+TGG + chr7_1:9694573-9694592 Msa1008960:CDS 40.0%
GAGCAAAGATGAAAATGGTG+GGG + chr7_1:9694575-9694594 Msa1008960:CDS 40.0%
AACGAGAACGGTGTTCTTGA+AGG + chr7_1:9691509-9691528 Msa1008960:intron 45.0%
ACGAGAACGGTGTTCTTGAA+GGG + chr7_1:9691510-9691529 Msa1008960:intron 45.0%
!!! TTTGGAGTTTTTGGAGTGGC+GGG + chr7_1:9691581-9691600 Msa1008960:CDS 45.0%
! GTGGCGGGATCTAATAGATT+TGG + chr7_1:9691596-9691615 Msa1008960:CDS 45.0%
!!! AGACTGATTTTGGTTGGGGA+AGG + chr7_1:9691627-9691646 Msa1008960:CDS 45.0%
!! GAGATAGTATCGGTGGATAG+AGG + chr7_1:9691662-9691681 Msa1008960:CDS 45.0%
TTTGCTCTCTGCCAAACCAA+TGG - chr7_1:9691693-9691712 None:intergenic 45.0%
GTTTGGCAGAGAGCAAAGAT+GGG + chr7_1:9691696-9691715 Msa1008960:CDS 45.0%
AGAGCAAAGATGGGAATGGT+GGG + chr7_1:9691705-9691724 Msa1008960:CDS 45.0%
!! GTGGTTTGCGTTGATGATTG+AGG - chr7_1:9693295-9693314 None:intergenic 45.0%
GAAAGTGAGAGGGATTGTTG+TGG - chr7_1:9693314-9693333 None:intergenic 45.0%
GGATGTCGAAGAAAGTGAGA+GGG - chr7_1:9693324-9693343 None:intergenic 45.0%
AGGATGTCGAAGAAAGTGAG+AGG - chr7_1:9693325-9693344 None:intergenic 45.0%
CTTCGACATCCTATGGCTAA+AGG + chr7_1:9693333-9693352 Msa1008960:CDS 45.0%
CTGGATACACCTTTAGCCAT+AGG - chr7_1:9693345-9693364 None:intergenic 45.0%
! AAGGGTGTGATTGGGAACTT+GGG - chr7_1:9693393-9693412 None:intergenic 45.0%
!! CTAAAGGGAGAAAGTGTTCG+AGG - chr7_1:9693468-9693487 None:intergenic 45.0%
GAACACTTTCTCCCTTTAGC+TGG + chr7_1:9693469-9693488 Msa1008960:CDS 45.0%
! CACCATCATTTGGGGTATGT+TGG - chr7_1:9693534-9693553 None:intergenic 45.0%
CGAGACAAAGAAGCTTCATG+TGG - chr7_1:9693613-9693632 None:intergenic 45.0%
GAATCTGCGGATTCCAAATG+CGG - chr7_1:9693646-9693665 None:intergenic 45.0%
! AGCCCAAGCTTTGATGAACA+TGG - chr7_1:9693770-9693789 None:intergenic 45.0%
GTTGCACTGAGATCTTATCC+AGG + chr7_1:9693914-9693933 Msa1008960:CDS 45.0%
CTTATCCAGGATGTTCCCAA+AGG + chr7_1:9693927-9693946 Msa1008960:CDS 45.0%
!! CGAACTGAGTCTTCGAGTTT+TGG - chr7_1:9693994-9694013 None:intergenic 45.0%
TTCAAGCGTGAGTTTGAACG+TGG - chr7_1:9694019-9694038 None:intergenic 45.0%
TCCCCATAGATTGCAGATCA+AGG + chr7_1:9694217-9694236 Msa1008960:CDS 45.0%
!!! TTGGTATTTTTGGAGTGGGG+GGG + chr7_1:9694451-9694470 Msa1008960:CDS 45.0%
!!! AGACTGATTTTGGTTGGGGA+AGG + chr7_1:9691627-9691646 Msa1008960:CDS 45.0%
AAGGCCAAAAAAGGTGGAGA+TGG + chr7_1:9694515-9694534 Msa1008960:CDS 45.0%
!!! GACACCATCTCCACCTTTTT+TGG - chr7_1:9694522-9694541 None:intergenic 45.0%
! GAAAATGGTGGGGTTGAAGT+TGG + chr7_1:9694585-9694604 Msa1008960:CDS 45.0%
!!! AAACATATTTTAAAAAATTT+GGG - chr7_1:9692172-9692191 None:intergenic 5.0%
!! TATATTACAATAATTAAATA+TGG + chr7_1:9692618-9692637 Msa1008960:intron 5.0%
TCACCGTAGATTGCAGAGCA+AGG + chr7_1:9691348-9691367 Msa1008960:CDS 50.0%
CGAGAACGGTGTTCTTGAAG+GGG + chr7_1:9691511-9691530 Msa1008960:intron 50.0%
GGTTTGGCAGAGAGCAAAGA+TGG + chr7_1:9691695-9691714 Msa1008960:CDS 50.0%
GCAGAGAGCAAAGATGGGAA+TGG + chr7_1:9691701-9691720 Msa1008960:CDS 50.0%
GAGAGCAAAGATGGGAATGG+TGG + chr7_1:9691704-9691723 Msa1008960:CDS 50.0%
GAGCAAAGATGGGAATGGTG+GGG + chr7_1:9691706-9691725 Msa1008960:CDS 50.0%
AATAAGAGGTCGGGCTCATG+TGG + chr7_1:9691838-9691857 Msa1008960:intron 50.0%
AGGGAAAAGGTTCCGGTTGA+AGG + chr7_1:9692292-9692311 Msa1008960:intron 50.0%
CAAGGGAACAAAAGCTCACG+TGG - chr7_1:9692742-9692761 None:intergenic 50.0%
GTGTGATTGGGAACTTGGGA+GGG - chr7_1:9693389-9693408 None:intergenic 50.0%
! GAAGGGTGTGATTGGGAACT+TGG - chr7_1:9693394-9693413 None:intergenic 50.0%
GTTGGACTCTGCAATGAGCA+AGG - chr7_1:9693560-9693579 None:intergenic 50.0%
AGCGATTCATGGAGCTGCTA+AGG + chr7_1:9694170-9694189 Msa1008960:CDS 50.0%
GTGGGGGGGTCTAACAAATT+TGG + chr7_1:9694465-9694484 Msa1008960:CDS 50.0%
TGGTTGGGGAAGGCCAAAAA+AGG + chr7_1:9691637-9691656 Msa1008960:CDS 50.0%
TTGGGGAAGGCCAAAAAAGG+TGG + chr7_1:9694509-9694528 Msa1008960:CDS 50.0%
!! GAGATGGTGTCGGTAGATAG+AGG + chr7_1:9694531-9694550 Msa1008960:CDS 50.0%
! GGGAATGGTGGGGTTGAAGT+TGG + chr7_1:9691716-9691735 Msa1008960:CDS 55.0%
GGTGTGATTGGGAACTTGGG+AGG - chr7_1:9693390-9693409 None:intergenic 55.0%
AGAGGTCGGGCTCATGTGGT+TGG + chr7_1:9691842-9691861 Msa1008960:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9691320 9694701 9691320 ID=Msa1008960;Name=Msa1008960
chr7_1 mRNA 9691320 9694701 9691320 ID=Msa1008960-mRNA-1;Parent=Msa1008960;Name=Msa1008960-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0|0|3|0|641
chr7_1 exon 9691320 9691518 9691320 ID=Msa1008960-mRNA-1:exon:2763;Parent=Msa1008960-mRNA-1
chr7_1 exon 9691531 9691757 9691531 ID=Msa1008960-mRNA-1:exon:2764;Parent=Msa1008960-mRNA-1
chr7_1 exon 9693202 9694701 9693202 ID=Msa1008960-mRNA-1:exon:2765;Parent=Msa1008960-mRNA-1
chr7_1 CDS 9691320 9691518 9691320 ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1
chr7_1 CDS 9691531 9691757 9691531 ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1
chr7_1 CDS 9693202 9694701 9693202 ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1
Gene Sequence

>Msa1008960

ATGGAGAAAGAGAAGTTTTCTTTTGCTTTCACCGTAGATTGCAGAGCAAGGTTAGAACCACCAATACCAAGTAACTTTATTGGAAACTGTGTTTGGGGGAACTTCATCGATACACAACCATTGGATTTCATAAAAGAAGATGGTGTTTTTTTAGTTGCTAAGTGTATTTACGAGAAAATAAAGATGATAAACGAGAACGGGGCTATTAATGACGGGTATGATAAGTATAATTCTTTGATAAATGAAGGATTTGGAGTTTTTGGAGTGGCGGGATCTAATAGATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCAAAAAAAGTCGAGATAGTATCGGTGGATAGAGGTTTAACCATTGGTTTGGCAGAGAGCAAAGATGGGAATGGTGGGGTTGAAGTTGGTCTTGTTCTTAATAAGCACCTAAGAAATTTTATTCAAACAACACTTCCTTTATCTCATATGGCTTTCAACAACAAGAATATCAAGATCCATGAACACATCAATGTTGCTCCTCAATCATCAACGCAAACCACAACAATCCCTCTCACTTTCTTCGACATCCTATGGCTAAAGGTGTATCCAGTAGAACGTGTTTTCTTCTACACCCTCCCAAGTTCCCAATCACACCCTTCTTTCTTCTTCCAAAAGCTTGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCGAACACTTTCTCCCTTTAGCTGGTAAGATCATTTGGCCTTCCGAATCTCAACAACCAATAATCCAACATACCCCAAATGATGGTGTTTCCTTGCTCATTGCAGAGTCCAACGTTGATTTCTATCAAGTCATTGAAAACTCACCACATGAAGCTTCTTTGTCTCGTTCTTTTATACCGCATTTGGAATCCGCAGATTCTTTTGCTTCAATTATTTCAATTCAGATAACCCTTTTTCAAAAAAGTGGTTTTTCCATTGGAACTAGTACACACCATGCTATTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCTTGGGCTTATTTATGCAACAAAGCAATTGAAACCAATGAAGAATCACCAACTTTGTTACCTGAGTTAGAACCTCTATTCAACAGGGAAATCATCAAAGACCCAAATGAACTTGGTGTTACATTCACAAATAGTTGCACTGAGATCTTATCCAGGATGTTCCCAAAGGAAAAAGGAAACGAACATAGCTTAAATATTTTACACTTTGAACCAAAACTCGAAGACTCAGTTCGTGCCACGTTCAAACTCACGCTTGAAGATTTGAACAAGATAAAGCAAATGGTATTATCAAAATGGGAAGTTGTTGAAAAAAATGAATCAAATTCAAAGCCACAATCTTTATCAACCTTTGTTCTCACTTGTGCTTATTCACTCGTTTGTTACGCAAAAGCGATTCATGGAGCTGCTAAGGAGAAAGAGAAGTTTTGTTTTGCTTTCCCCATAGATTGCAGATCAAGGTTAGAACCTCCAATACCAAATAACTATTTTGGAAATTGTGTTTGGGGGCATTTCATTGATACAAAACCATCAGACTTTCTAGAAGAAGACGGTGTTTATTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGATAATGGTGTTTTTCAAGGATCTATTAATGATGGGTTTGGCAAATATAATTCTTTGATAAATCAGGGATTTGGTATTTTTGGAGTGGGGGGGTCTAACAAATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCAAAAAAGGTGGAGATGGTGTCGGTAGATAGAGGTTTAATCATTGGTTTGGCAGAGAGCAAAGATGAAAATGGTGGGGTTGAAGTTGGTCTTGTTCTTAATAAGTGTGTAATGGACCTCTTTAGCACTTTCTTTTTTGAAGGACTTTGCTTAATTGACAGTAGAGAGGAAGTGCAATGTTGA
Protein sequence

>Msa1008960

MEKEKFSFAFTVDCRARLEPPIPSNFIGNCVWGNFIDTQPLDFIKEDGVFLVAKCIYEKIKMINENGAINDGYDKYNSLINEGFGVFGVAGSNRFGVYETDFGWGRPKKVEIVSVDRGLTIGLAESKDGNGGVEVGLVLNKHLRNFIQTTLPLSHMAFNNKNIKIHEHINVAPQSSTQTTTIPLTFFDILWLKVYPVERVFFYTLPSSQSHPSFFFQKLVPILKSSLSLTLEHFLPLAGKIIWPSESQQPIIQHTPNDGVSLLIAESNVDFYQVIENSPHEASLSRSFIPHLESADSFASIISIQITLFQKSGFSIGTSTHHAILDGKSSTMFIKAWAYLCNKAIETNEESPTLLPELEPLFNREIIKDPNELGVTFTNSCTEILSRMFPKEKGNEHSLNILHFEPKLEDSVRATFKLTLEDLNKIKQMVLSKWEVVEKNESNSKPQSLSTFVLTCAYSLVCYAKAIHGAAKEKEKFCFAFPIDCRSRLEPPIPNNYFGNCVWGHFIDTKPSDFLEEDGVYLVAKCIHEKIKMINDNGVFQGSINDGFGKYNSLINQGFGIFGVGGSNKFGVYETDFGWGRPKKVEMVSVDRGLIIGLAESKDENGGVEVGLVLNKCVMDLFSTFFFEGLCLIDSREEVQC*