AlfalfaGEDB | Msa1008960

M. sativa cultivar zhongmu-4 / Msa1008960

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0047634
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008960	RHN44424.1	64.948	291	93	3	328	618	35	316	2.42e-119	385
Msa1008960	RHN44424.1	69.066	653	168	8	3	630	172	815	0.0	911
Msa1008960	RHN44424.1	72.368	152	38	1	2	149	658	809	1.33e-60	228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008960	sp\|Q940Z5\|PMAT1_ARATH	39.203	477	264	15	162	630	9	467	6.64e-91	292
Msa1008960	sp\|Q940Z5\|PMAT1_ARATH	42.553	141	71	3	8	142	318	454	5.77e-29	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008960	A0A396GY84	64.948	291	93	3	328	618	35	316	1.15e-119	385
Msa1008960	A0A396GY84	69.066	653	168	8	3	630	172	815	0.0	911
Msa1008960	A0A396GY84	72.368	152	38	1	2	149	658	809	6.35e-61	228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1008960	0.808097	3.661631e-50	-8.615850e-47
Msa0000220	Msa1008960	0.835779	1.375540e-56	-8.615850e-47
Msa0005690	Msa1008960	0.839817	1.263052e-57	-8.615850e-47
Msa0006700	Msa1008960	0.813812	2.118166e-51	-8.615850e-47
Msa0008330	Msa1008960	0.846592	1.971386e-59	-8.615850e-47
Msa0012740	Msa1008960	0.822380	2.443566e-53	-8.615850e-47
Msa0014790	Msa1008960	0.815822	7.591648e-52	-8.615850e-47
Msa0014970	Msa1008960	0.807268	5.492377e-50	-8.615850e-47
Msa0016830	Msa1008960	0.804391	2.209943e-49	-8.615850e-47
Msa0017420	Msa1008960	0.828142	1.059855e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008960	MtrunA17_Chr7g0219291	69.066	653	168	8	3	630	172	815	0.0	911
Msa1008960	MtrunA17_Chr7g0219291	64.948	291	93	3	328	618	35	316	2.22e-123	385
Msa1008960	MtrunA17_Chr7g0219291	72.368	152	38	1	2	149	658	809	1.22e-64	228
Msa1008960	MtrunA17_Chr7g0219181	81.723	476	87	0	156	631	1	476	0.0	795
Msa1008960	MtrunA17_Chr7g0219181	89.333	150	12	1	1	146	317	466	2.01e-88	283
Msa1008960	MtrunA17_Chr7g0219241	74.262	474	119	3	159	632	5	475	0.0	722
Msa1008960	MtrunA17_Chr7g0219241	72.185	151	39	1	2	149	317	467	9.16e-71	237
Msa1008960	MtrunA17_Chr7g0219121	56.584	486	195	10	156	632	1	479	0.0	523
Msa1008960	MtrunA17_Chr7g0219121	58.553	152	57	2	2	149	322	471	4.55e-49	178
Msa1008960	MtrunA17_Chr7g0219211	73.154	298	78	2	157	453	3	299	4.20e-148	432

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008960	AT5G39050.1	39.203	477	264	15	162	630	9	467	6.75e-92	292
Msa1008960	AT5G39050.1	42.553	141	71	3	8	142	318	454	5.87e-30	124
Msa1008960	AT5G39080.1	39.530	468	254	14	162	620	4	451	7.33e-92	292
Msa1008960	AT5G39080.1	44.604	139	69	6	8	142	314	448	6.19e-25	108
Msa1008960	AT3G29670.1	38.359	451	248	10	182	630	27	449	1.28e-86	278
Msa1008960	AT3G29670.1	38.406	138	82	2	7	141	298	435	1.08e-21	99.0
Msa1008960	AT3G29635.1	36.404	456	263	10	181	633	26	457	1.00e-85	276
Msa1008960	AT3G29635.1	35.417	144	88	3	2	141	298	440	9.17e-20	93.2
Msa1008960	AT3G29590.1	36.534	479	261	13	160	630	5	448	2.03e-83	270
Msa1008960	AT3G29590.1	38.732	142	75	3	9	141	296	434	8.31e-20	93.2

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Find 123 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCGAGATAGTATCGG+TGG	0.614890	7_1:+9691655	Msa1008960:CDS
AAATAGTTATTTGGTATTGG+AGG	0.490971	7_1:-9694246	None:intergenic
AAATGATCTTACCAGCTAAA+GGG	0.506511	7_1:-9693480	None:intergenic
AACACTTCCTTTATCTCATA+TGG	0.312786	7_1:+9693222	Msa1008960:CDS
AACCATGTTCATCAAAGCTT+GGG	0.382728	7_1:+9693765	Msa1008960:CDS
AACCTTGATCTGCAATCTAT+GGG	0.445561	7_1:-9694219	None:intergenic
AAGGGTGTGATTGGGAACTT+GGG	0.480787	7_1:-9693390	None:intergenic
AATGTAACACCAAGTTCATT+TGG	0.336977	7_1:-9693883	None:intergenic
AATTGAAGCAAAAGAATCTG+CGG	0.642981	7_1:-9693656	None:intergenic
ACAAAGGTTGATAAAGATTG+TGG	0.527106	7_1:-9694111	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAATAAAGTTACTTGGTAT+TGG	-	chr7_1:9691383-9691402	None:intergenic	30.0%
CCAATACCAAGTAACTTTAT+TGG	+	chr7_1:9691380-9691399	Msa1008960:CDS	30.0%
CAGTTTCCAATAAAGTTACT+TGG	-	chr7_1:9691389-9691408	None:intergenic	30.0%
ACTTTATTGGAAACTGTGTT+TGG	+	chr7_1:9691393-9691412	Msa1008960:CDS	30.0%
CTTTATTGGAAACTGTGTTT+GGG	+	chr7_1:9691394-9691413	Msa1008960:CDS	30.0%
TTTATTGGAAACTGTGTTTG+GGG	+	chr7_1:9691395-9691414	Msa1008960:CDS	30.0%
TGTTCTTAATAAGCACGTAA+TGG	+	chr7_1:9691742-9691761	Msa1008960:intron	30.0%
GCAATGTGATAGATAATAAG+AGG	+	chr7_1:9691824-9691843	Msa1008960:intron	30.0%
TGTGATAGATAATAAGAGGT+CGG	+	chr7_1:9691828-9691847	Msa1008960:intron	30.0%
CAAATGTATAGAAAGGGAAA+AGG	+	chr7_1:9692279-9692298	Msa1008960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	9691320	9694701	9691320	ID=Msa1008960;Name=Msa1008960
chr7_1	mRNA	9691320	9694701	9691320	ID=Msa1008960-mRNA-1;Parent=Msa1008960;Name=Msa1008960-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0\|0\|1\|0\|0\|3\|0\|641
chr7_1	exon	9691320	9691518	9691320	ID=Msa1008960-mRNA-1:exon:2763;Parent=Msa1008960-mRNA-1
chr7_1	exon	9691531	9691757	9691531	ID=Msa1008960-mRNA-1:exon:2764;Parent=Msa1008960-mRNA-1
chr7_1	exon	9693202	9694701	9693202	ID=Msa1008960-mRNA-1:exon:2765;Parent=Msa1008960-mRNA-1
chr7_1	CDS	9691320	9691518	9691320	ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1
chr7_1	CDS	9691531	9691757	9691531	ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1
chr7_1	CDS	9693202	9694701	9693202	ID=Msa1008960-mRNA-1:cds;Parent=Msa1008960-mRNA-1

Gene Sequence

>Msa1008960

ATGGAGAAAGAGAAGTTTTCTTTTGCTTTCACCGTAGATTGCAGAGCAAGGTTAGAACCACCAATACCAAGTAACTTTATTGGAAACTGTGTTTGGGGGAACTTCATCGATACACAACCATTGGATTTCATAAAAGAAGATGGTGTTTTTTTAGTTGCTAAGTGTATTTACGAGAAAATAAAGATGATAAACGAGAACGGGGCTATTAATGACGGGTATGATAAGTATAATTCTTTGATAAATGAAGGATTTGGAGTTTTTGGAGTGGCGGGATCTAATAGATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCAAAAAAAGTCGAGATAGTATCGGTGGATAGAGGTTTAACCATTGGTTTGGCAGAGAGCAAAGATGGGAATGGTGGGGTTGAAGTTGGTCTTGTTCTTAATAAGCACCTAAGAAATTTTATTCAAACAACACTTCCTTTATCTCATATGGCTTTCAACAACAAGAATATCAAGATCCATGAACACATCAATGTTGCTCCTCAATCATCAACGCAAACCACAACAATCCCTCTCACTTTCTTCGACATCCTATGGCTAAAGGTGTATCCAGTAGAACGTGTTTTCTTCTACACCCTCCCAAGTTCCCAATCACACCCTTCTTTCTTCTTCCAAAAGCTTGTTCCAATTCTCAAATCTTCACTCTCTTTAACCCTCGAACACTTTCTCCCTTTAGCTGGTAAGATCATTTGGCCTTCCGAATCTCAACAACCAATAATCCAACATACCCCAAATGATGGTGTTTCCTTGCTCATTGCAGAGTCCAACGTTGATTTCTATCAAGTCATTGAAAACTCACCACATGAAGCTTCTTTGTCTCGTTCTTTTATACCGCATTTGGAATCCGCAGATTCTTTTGCTTCAATTATTTCAATTCAGATAACCCTTTTTCAAAAAAGTGGTTTTTCCATTGGAACTAGTACACACCATGCTATTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCTTGGGCTTATTTATGCAACAAAGCAATTGAAACCAATGAAGAATCACCAACTTTGTTACCTGAGTTAGAACCTCTATTCAACAGGGAAATCATCAAAGACCCAAATGAACTTGGTGTTACATTCACAAATAGTTGCACTGAGATCTTATCCAGGATGTTCCCAAAGGAAAAAGGAAACGAACATAGCTTAAATATTTTACACTTTGAACCAAAACTCGAAGACTCAGTTCGTGCCACGTTCAAACTCACGCTTGAAGATTTGAACAAGATAAAGCAAATGGTATTATCAAAATGGGAAGTTGTTGAAAAAAATGAATCAAATTCAAAGCCACAATCTTTATCAACCTTTGTTCTCACTTGTGCTTATTCACTCGTTTGTTACGCAAAAGCGATTCATGGAGCTGCTAAGGAGAAAGAGAAGTTTTGTTTTGCTTTCCCCATAGATTGCAGATCAAGGTTAGAACCTCCAATACCAAATAACTATTTTGGAAATTGTGTTTGGGGGCATTTCATTGATACAAAACCATCAGACTTTCTAGAAGAAGACGGTGTTTATTTAGTTGCTAAGTGTATTCATGAGAAAATAAAGATGATAAATGATAATGGTGTTTTTCAAGGATCTATTAATGATGGGTTTGGCAAATATAATTCTTTGATAAATCAGGGATTTGGTATTTTTGGAGTGGGGGGGTCTAACAAATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCAAAAAAGGTGGAGATGGTGTCGGTAGATAGAGGTTTAATCATTGGTTTGGCAGAGAGCAAAGATGAAAATGGTGGGGTTGAAGTTGGTCTTGTTCTTAATAAGTGTGTAATGGACCTCTTTAGCACTTTCTTTTTTGAAGGACTTTGCTTAATTGACAGTAGAGAGGAAGTGCAATGTTGA

Protein sequence

>Msa1008960

MEKEKFSFAFTVDCRARLEPPIPSNFIGNCVWGNFIDTQPLDFIKEDGVFLVAKCIYEKIKMINENGAINDGYDKYNSLINEGFGVFGVAGSNRFGVYETDFGWGRPKKVEIVSVDRGLTIGLAESKDGNGGVEVGLVLNKHLRNFIQTTLPLSHMAFNNKNIKIHEHINVAPQSSTQTTTIPLTFFDILWLKVYPVERVFFYTLPSSQSHPSFFFQKLVPILKSSLSLTLEHFLPLAGKIIWPSESQQPIIQHTPNDGVSLLIAESNVDFYQVIENSPHEASLSRSFIPHLESADSFASIISIQITLFQKSGFSIGTSTHHAILDGKSSTMFIKAWAYLCNKAIETNEESPTLLPELEPLFNREIIKDPNELGVTFTNSCTEILSRMFPKEKGNEHSLNILHFEPKLEDSVRATFKLTLEDLNKIKQMVLSKWEVVEKNESNSKPQSLSTFVLTCAYSLVCYAKAIHGAAKEKEKFCFAFPIDCRSRLEPPIPNNYFGNCVWGHFIDTKPSDFLEEDGVYLVAKCIHEKIKMINDNGVFQGSINDGFGKYNSLINQGFGIFGVGGSNKFGVYETDFGWGRPKKVEMVSVDRGLIIGLAESKDENGGVEVGLVLNKCVMDLFSTFFFEGLCLIDSREEVQC*