Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867990 | KEH28665.1 | 84.211 | 190 | 18 | 3 | 1 | 189 | 1 | 179 | 1.43e-102 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867990 | sp|Q9T072|BH025_ARATH | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.08e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867990 | A0A072US12 | 84.211 | 190 | 18 | 3 | 1 | 189 | 1 | 179 | 6.85e-103 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028410 | Msa0867990 | 0.811615 | 6.406551e-51 | -8.615850e-47 |
| Msa0050360 | Msa0867990 | 0.827260 | 1.725842e-54 | -8.615850e-47 |
| Msa0050400 | Msa0867990 | 0.830174 | 3.406607e-55 | -8.615850e-47 |
| Msa0092750 | Msa0867990 | 0.826828 | 2.190134e-54 | -8.615850e-47 |
| Msa0093530 | Msa0867990 | -0.805252 | 1.460004e-49 | -8.615850e-47 |
| Msa0094420 | Msa0867990 | 0.809219 | 2.108534e-50 | -8.615850e-47 |
| Msa0624260 | Msa0867990 | 0.802147 | 6.440062e-49 | -8.615850e-47 |
| Msa0626700 | Msa0867990 | 0.864209 | 1.433746e-64 | -8.615850e-47 |
| Msa0631340 | Msa0867990 | 0.803321 | 3.686685e-49 | -8.615850e-47 |
| Msa0659640 | Msa0867990 | 0.803365 | 3.609030e-49 | -8.615850e-47 |
| Msa0664790 | Msa0867990 | 0.988331 | 1.338340e-173 | -8.615850e-47 |
| Msa0669710 | Msa0867990 | 0.812901 | 3.357307e-51 | -8.615850e-47 |
| Msa0669750 | Msa0867990 | 0.815296 | 9.942194e-52 | -8.615850e-47 |
| Msa0679270 | Msa0867990 | 0.808621 | 2.830042e-50 | -8.615850e-47 |
| Msa0698860 | Msa0867990 | 0.808030 | 3.783483e-50 | -8.615850e-47 |
| Msa0698880 | Msa0867990 | 0.827669 | 1.377335e-54 | -8.615850e-47 |
| Msa0727020 | Msa0867990 | 0.801063 | 1.074207e-48 | -8.615850e-47 |
| Msa0743630 | Msa0867990 | 0.808518 | 2.978308e-50 | -8.615850e-47 |
| Msa0766880 | Msa0867990 | 0.810900 | 9.157665e-51 | -8.615850e-47 |
| Msa0771940 | Msa0867990 | 0.802688 | 4.981443e-49 | -8.615850e-47 |
| Msa0793060 | Msa0867990 | 0.815066 | 1.118233e-51 | -8.615850e-47 |
| Msa0804930 | Msa0867990 | 0.817575 | 3.071799e-52 | -8.615850e-47 |
| Msa0124070 | Msa0867990 | 0.819674 | 1.026194e-52 | -8.615850e-47 |
| Msa0126960 | Msa0867990 | -0.805592 | 1.239385e-49 | -8.615850e-47 |
| Msa0156780 | Msa0867990 | 0.832908 | 7.227101e-56 | -8.615850e-47 |
| Msa0186750 | Msa0867990 | 0.800503 | 1.397801e-48 | -8.615850e-47 |
| Msa0197600 | Msa0867990 | 0.809178 | 2.151060e-50 | -8.615850e-47 |
| Msa0201910 | Msa0867990 | 0.820969 | 5.178337e-53 | -8.615850e-47 |
| Msa0222070 | Msa0867990 | 0.821627 | 3.651904e-53 | -8.615850e-47 |
| Msa0222120 | Msa0867990 | 0.819277 | 1.263693e-52 | -8.615850e-47 |
| Msa0227290 | Msa0867990 | 0.828997 | 6.584703e-55 | -8.615850e-47 |
| Msa0227490 | Msa0867990 | 0.801849 | 7.416013e-49 | -8.615850e-47 |
| Msa0365150 | Msa0867990 | 0.816600 | 5.087261e-52 | -8.615850e-47 |
| Msa0370510 | Msa0867990 | 0.812636 | 3.836398e-51 | -8.615850e-47 |
| Msa0372350 | Msa0867990 | 0.810408 | 1.169827e-50 | -8.615850e-47 |
| Msa0482020 | Msa0867990 | 0.808553 | 2.927541e-50 | -8.615850e-47 |
| Msa0240290 | Msa0867990 | 0.823849 | 1.109771e-53 | -8.615850e-47 |
| Msa0244370 | Msa0867990 | 0.812606 | 3.895729e-51 | -8.615850e-47 |
| Msa0253410 | Msa0867990 | 0.813131 | 2.989765e-51 | -8.615850e-47 |
| Msa0263620 | Msa0867990 | 0.820210 | 7.735244e-53 | -8.615850e-47 |
| Msa0268180 | Msa0867990 | 0.803937 | 2.745805e-49 | -8.615850e-47 |
| Msa0268420 | Msa0867990 | 0.807516 | 4.864992e-50 | -8.615850e-47 |
| Msa0268760 | Msa0867990 | 0.800205 | 1.607427e-48 | -8.615850e-47 |
| Msa0269060 | Msa0867990 | 0.818290 | 2.117518e-52 | -8.615850e-47 |
| Msa0281570 | Msa0867990 | 0.803087 | 4.120487e-49 | -8.615850e-47 |
| Msa0282880 | Msa0867990 | 0.803238 | 3.834281e-49 | -8.615850e-47 |
| Msa0301460 | Msa0867990 | 0.827595 | 1.434415e-54 | -8.615850e-47 |
| Msa0317630 | Msa0867990 | 0.817935 | 2.547679e-52 | -8.615850e-47 |
| Msa0320540 | Msa0867990 | 0.809441 | 1.889087e-50 | -8.615850e-47 |
| Msa0321200 | Msa0867990 | 0.804771 | 1.840969e-49 | -8.615850e-47 |
| Msa0344070 | Msa0867990 | 0.815445 | 9.210322e-52 | -8.615850e-47 |
| Msa0361040 | Msa0867990 | 0.804197 | 2.424411e-49 | -8.615850e-47 |
| Msa0534890 | Msa0867990 | 0.812963 | 3.253336e-51 | -8.615850e-47 |
| Msa0577140 | Msa0867990 | 0.802869 | 4.572289e-49 | -8.615850e-47 |
| Msa0582710 | Msa0867990 | 0.805624 | 1.220058e-49 | -8.615850e-47 |
| Msa0582830 | Msa0867990 | 0.806523 | 7.892386e-50 | -8.615850e-47 |
| Msa0586890 | Msa0867990 | 0.988824 | 1.467278e-175 | -8.615850e-47 |
| Msa0591370 | Msa0867990 | 0.803048 | 4.198810e-49 | -8.615850e-47 |
| Msa0595780 | Msa0867990 | 0.814564 | 1.444953e-51 | -8.615850e-47 |
| Msa0598680 | Msa0867990 | 0.804748 | 1.861166e-49 | -8.615850e-47 |
| Msa0863780 | Msa0867990 | 0.803745 | 3.009854e-49 | -8.615850e-47 |
| Msa0867990 | Msa0907520 | 0.803945 | 2.736546e-49 | -8.615850e-47 |
| Msa0867990 | Msa0931280 | 0.813458 | 2.533318e-51 | -8.615850e-47 |
| Msa0867990 | Msa0983030 | 0.802355 | 5.834262e-49 | -8.615850e-47 |
| Msa0867990 | Msa1077940 | -0.804222 | 2.395492e-49 | -8.615850e-47 |
| Msa0867990 | Msa1086060 | 0.805972 | 1.031349e-49 | -8.615850e-47 |
| Msa0867990 | Msa1086160 | 0.824014 | 1.015003e-53 | -8.615850e-47 |
| Msa0867990 | Msa1086170 | 0.804645 | 1.955309e-49 | -8.615850e-47 |
| Msa0867990 | Msa1086260 | 0.821706 | 3.501357e-53 | -8.615850e-47 |
| Msa0867990 | Msa1086290 | 0.800447 | 1.435407e-48 | -8.615850e-47 |
| Msa0867990 | Msa1088690 | 0.826164 | 3.152839e-54 | -8.615850e-47 |
| Msa0867990 | Msa1127940 | -0.812075 | 5.087090e-51 | -8.615850e-47 |
| Msa0867990 | Msa1138600 | 0.815338 | 9.728095e-52 | -8.615850e-47 |
| Msa0867990 | Msa1165860 | -0.806372 | 8.493321e-50 | -8.615850e-47 |
| Msa0867990 | Msa1182950 | 0.803568 | 3.276199e-49 | -8.615850e-47 |
| Msa0867990 | Msa1195860 | 0.835196 | 1.931730e-56 | -8.615850e-47 |
| Msa0867990 | Msa1208510 | 0.801632 | 8.214717e-49 | -8.615850e-47 |
| Msa0867990 | Msa1209390 | 0.811723 | 6.068764e-51 | -8.615850e-47 |
| Msa0867990 | Msa1209650 | 0.805051 | 1.608969e-49 | -8.615850e-47 |
| Msa0867990 | Msa1211880 | 0.803622 | 3.192346e-49 | -8.615850e-47 |
| Msa0867990 | Msa1244180 | 0.820934 | 5.275964e-53 | -8.615850e-47 |
| Msa0867990 | Msa1248400 | 0.803035 | 4.223407e-49 | -8.615850e-47 |
| Msa0867990 | Msa1267800 | 0.814477 | 1.510010e-51 | -8.615850e-47 |
| Msa0867990 | Msa1286660 | 0.808980 | 2.372488e-50 | -8.615850e-47 |
| Msa0867990 | Msa1298740 | 0.823693 | 1.206988e-53 | -8.615850e-47 |
| Msa0867990 | Msa1327820 | 0.803856 | 2.854692e-49 | -8.615850e-47 |
| Msa0867990 | Msa1330240 | 0.802601 | 5.192321e-49 | -8.615850e-47 |
| Msa0867990 | Msa1355020 | 0.802679 | 5.002661e-49 | -8.615850e-47 |
| Msa0867990 | Msa1373910 | 0.808464 | 3.057879e-50 | -8.615850e-47 |
| Msa0867990 | Msa1394170 | 0.810528 | 1.102075e-50 | -8.615850e-47 |
| Msa0867990 | Msa1406230 | 0.803075 | 4.145369e-49 | -8.615850e-47 |
| Msa0867990 | Msa1420600 | 0.828220 | 1.014582e-54 | -8.615850e-47 |
| Msa0867990 | Msa1425540 | 0.819523 | 1.110839e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867990 | MtrunA17_Chr4g0002851 | 83.422 | 187 | 19 | 3 | 1 | 186 | 1 | 176 | 9.26e-104 | 296 |
| Msa0867990 | MtrunA17_Chr7g0233441 | 80.214 | 187 | 25 | 3 | 1 | 186 | 1 | 176 | 9.17e-98 | 281 |
| Msa0867990 | MtrunA17_Chr4g0002831 | 70.256 | 195 | 50 | 5 | 1 | 192 | 1 | 190 | 1.07e-85 | 251 |
| Msa0867990 | MtrunA17_Chr2g0333621 | 46.207 | 145 | 61 | 4 | 57 | 186 | 149 | 291 | 1.28e-25 | 100 |
| Msa0867990 | MtrunA17_Chr4g0002801 | 35.751 | 193 | 93 | 4 | 12 | 186 | 131 | 310 | 1.42e-23 | 95.5 |
| Msa0867990 | MtrunA17_Chr4g0002781 | 35.912 | 181 | 86 | 5 | 22 | 186 | 163 | 329 | 2.20e-23 | 95.1 |
| Msa0867990 | MtrunA17_Chr5g0400621 | 43.284 | 134 | 65 | 2 | 70 | 192 | 182 | 315 | 4.23e-21 | 89.0 |
| Msa0867990 | MtrunA17_Chr5g0400641 | 38.686 | 137 | 73 | 2 | 70 | 195 | 23 | 159 | 8.80e-21 | 84.3 |
| Msa0867990 | MtrunA17_Chr2g0333611 | 38.095 | 147 | 81 | 3 | 50 | 186 | 49 | 195 | 9.83e-21 | 85.9 |
| Msa0867990 | MtrunA17_Chr5g0400661 | 40.000 | 140 | 60 | 4 | 71 | 186 | 175 | 314 | 3.13e-19 | 83.6 |
| Msa0867990 | MtrunA17_Chr8g0336681 | 35.762 | 151 | 72 | 3 | 58 | 186 | 168 | 315 | 2.21e-18 | 81.6 |
| Msa0867990 | MtrunA17_Chr7g0225901 | 36.842 | 133 | 61 | 4 | 71 | 186 | 114 | 240 | 4.68e-18 | 79.3 |
| Msa0867990 | MtrunA17_Chr2g0280161 | 36.154 | 130 | 71 | 2 | 71 | 188 | 203 | 332 | 7.32e-18 | 80.1 |
| Msa0867990 | MtrunA17_Chr2g0333641 | 39.437 | 142 | 72 | 3 | 57 | 186 | 148 | 287 | 1.87e-17 | 78.6 |
| Msa0867990 | MtrunA17_Chr4g0049331 | 33.588 | 131 | 76 | 2 | 70 | 189 | 160 | 290 | 1.44e-16 | 76.3 |
| Msa0867990 | MtrunA17_Chr4g0033391 | 32.886 | 149 | 79 | 3 | 53 | 186 | 154 | 296 | 1.22e-15 | 73.6 |
| Msa0867990 | MtrunA17_Chr6g0468461 | 35.537 | 121 | 69 | 2 | 70 | 187 | 198 | 312 | 2.63e-15 | 72.8 |
| Msa0867990 | MtrunA17_Chr5g0400671 | 34.921 | 126 | 74 | 2 | 70 | 187 | 179 | 304 | 4.27e-15 | 72.0 |
| Msa0867990 | MtrunA17_Chr4g0033291 | 34.228 | 149 | 77 | 4 | 53 | 186 | 162 | 304 | 7.27e-15 | 71.6 |
| Msa0867990 | MtrunA17_Chr6g0468491 | 36.090 | 133 | 62 | 4 | 71 | 186 | 163 | 289 | 1.06e-14 | 70.9 |
| Msa0867990 | MtrunA17_Chr2g0307131 | 34.328 | 134 | 65 | 3 | 70 | 186 | 204 | 331 | 1.42e-14 | 70.9 |
| Msa0867990 | MtrunA17_Chr2g0307141 | 31.783 | 129 | 75 | 2 | 70 | 186 | 208 | 335 | 6.56e-14 | 68.9 |
| Msa0867990 | MtrunA17_Chr4g0033281 | 33.099 | 142 | 87 | 3 | 53 | 186 | 160 | 301 | 1.32e-13 | 68.2 |
| Msa0867990 | MtrunA17_Chr7g0249811 | 34.286 | 140 | 77 | 3 | 56 | 186 | 175 | 308 | 1.55e-13 | 67.8 |
| Msa0867990 | MtrunA17_Chr4g0054621 | 33.884 | 121 | 74 | 3 | 71 | 186 | 198 | 317 | 4.37e-13 | 66.6 |
| Msa0867990 | MtrunA17_Chr2g0333541 | 35.526 | 152 | 82 | 4 | 50 | 186 | 98 | 248 | 8.94e-13 | 65.1 |
| Msa0867990 | MtrunA17_Chr4g0054581 | 31.507 | 146 | 69 | 5 | 70 | 192 | 223 | 360 | 3.98e-12 | 63.9 |
| Msa0867990 | MtrunA17_Chr4g0054551 | 35.714 | 126 | 72 | 4 | 70 | 186 | 180 | 305 | 3.67e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867990 | AT4G37850.2 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0867990 | AT4G37850.1 | 39.161 | 143 | 72 | 5 | 57 | 185 | 163 | 304 | 1.09e-19 | 85.1 |
| Msa0867990 | AT2G22760.2 | 36.232 | 138 | 74 | 3 | 70 | 193 | 144 | 281 | 5.32e-17 | 77.4 |
| Msa0867990 | AT2G22760.1 | 35.115 | 131 | 71 | 3 | 70 | 186 | 144 | 274 | 8.95e-16 | 73.9 |
| Msa0867990 | AT2G22770.1 | 33.544 | 158 | 78 | 3 | 56 | 186 | 142 | 299 | 8.03e-14 | 68.9 |
Find 47 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGTAGAGTCTTGAATTT+TGG | 0.151614 | 6_1:-1353133 | Msa0867990:CDS |
| TACATTACATATATAGTTCT+TGG | 0.239735 | 6_1:-1357209 | Msa0867990:five_prime_UTR |
| TTGGGTTGTTATATAATATA+GGG | 0.248624 | 6_1:+1357276 | None:intergenic |
| AGTTCTTGGAACAAAATTAA+TGG | 0.286364 | 6_1:-1357195 | Msa0867990:exon |
| TTGGCCTTCTAATTCTGATT+TGG | 0.292992 | 6_1:-1357156 | Msa0867990:intron |
| TTTACCAAATCAGAATTAGA+AGG | 0.359501 | 6_1:+1357152 | None:intergenic |
| GTTGGGTTGTTATATAATAT+AGG | 0.359629 | 6_1:+1357275 | None:intergenic |
| TGGAGGAGTCGGGAGAAAAT+TGG | 0.405975 | 6_1:-1357175 | Msa0867990:CDS |
| AACACTCTTGCTTTGACCTC+TGG | 0.412988 | 6_1:+1353253 | None:intergenic |
| GGTTGTGAAGGTGAGTAATA+TGG | 0.419505 | 6_1:+1357360 | None:intergenic |
| ACGAACCTTCTTTAAGCCTA+TGG | 0.424699 | 6_1:+1356876 | None:intergenic |
| TGGGTTGTTATATAATATAG+GGG | 0.430477 | 6_1:+1357277 | None:intergenic |
| GGAGATCACAGAGATGTTGC+AGG | 0.441683 | 6_1:-1356911 | Msa0867990:CDS |
| GTCCAATGTGAGGAACAAAA+TGG | 0.442895 | 6_1:-1353208 | Msa0867990:CDS |
| GTAGTAATTTGAACTCAGTT+TGG | 0.459681 | 6_1:+1353303 | None:intergenic |
| AGATTCTCCATCTTTAAGAA+TGG | 0.468345 | 6_1:+1357020 | None:intergenic |
| GTGTGGATAAGAGGTGGGTT+GGG | 0.484793 | 6_1:+1357258 | None:intergenic |
| AGTGTGGATAAGAGGTGGGT+TGG | 0.494204 | 6_1:+1357257 | None:intergenic |
| AAACAAGAGAATGGTGGTTG+AGG | 0.500954 | 6_1:+1357339 | None:intergenic |
| TAAAGTACAGTGTGGATAAG+AGG | 0.503350 | 6_1:+1357249 | None:intergenic |
| GATGAAGCCATTCTTAAAGA+TGG | 0.508496 | 6_1:-1357027 | Msa0867990:CDS |
| AACAAAATTAATGGAGGAGT+CGG | 0.509366 | 6_1:-1357186 | Msa0867990:exon |
| AGTTCAAATTACTACAATTG+TGG | 0.519204 | 6_1:-1353295 | Msa0867990:CDS |
| CAGGAACTTTCAGACGCCAT+AGG | 0.519378 | 6_1:-1356892 | Msa0867990:CDS |
| AGACGCCATAGGCTTAAAGA+AGG | 0.520059 | 6_1:-1356881 | Msa0867990:intron |
| ATTGACTTGTATATGTACCT+TGG | 0.538882 | 6_1:+1353081 | None:intergenic |
| AGAGAGCTAGAACAAGAAGC+TGG | 0.540149 | 6_1:-1353349 | Msa0867990:CDS |
| ACAAAATTAATGGAGGAGTC+GGG | 0.571828 | 6_1:-1357185 | Msa0867990:exon |
| GTACAGTGTGGATAAGAGGT+GGG | 0.573739 | 6_1:+1357253 | None:intergenic |
| TGACATCACCATTGTTGCCA+AGG | 0.577300 | 6_1:-1353098 | Msa0867990:CDS |
| TACAAAGGAAAACAATGAGA+AGG | 0.583439 | 6_1:-1356932 | Msa0867990:CDS |
| AGTACAGTGTGGATAAGAGG+TGG | 0.587741 | 6_1:+1357252 | None:intergenic |
| GGGTTGTTATATAATATAGG+GGG | 0.595894 | 6_1:+1357278 | None:intergenic |
| TGGCAACAATGGTGATGTCA+AGG | 0.603091 | 6_1:+1353101 | None:intergenic |
| GATTCAACATTTGTAACGAA+AGG | 0.607336 | 6_1:-1353327 | Msa0867990:CDS |
| GGTTGTTATATAATATAGGG+GGG | 0.613478 | 6_1:+1357279 | None:intergenic |
| AATGGTGGTTGAGGTTGTGA+AGG | 0.616577 | 6_1:+1357348 | None:intergenic |
| TCTTGGAACAAAATTAATGG+AGG | 0.624977 | 6_1:-1357192 | Msa0867990:exon |
| TATATGTACCTTGGCAACAA+TGG | 0.630484 | 6_1:+1353090 | None:intergenic |
| AAGAATGATAAAGTACAGTG+TGG | 0.634617 | 6_1:+1357241 | None:intergenic |
| ATCTGTATGTGATGATGATG+AGG | 0.647394 | 6_1:-1356995 | Msa0867990:CDS |
| ATGAATTGAGTCGCTCACAC+AGG | 0.656277 | 6_1:-1357393 | Msa0867990:five_prime_UTR |
| GGCAACAATGGTGATGTCAA+GGG | 0.668997 | 6_1:+1353102 | None:intergenic |
| AAGTGATATTACTCTTCCAG+AGG | 0.685126 | 6_1:-1353269 | Msa0867990:CDS |
| AGATCCCACAGATAATACAA+AGG | 0.692675 | 6_1:-1356947 | Msa0867990:CDS |
| AACAATGGTGATGTCAAGGG+TGG | 0.697013 | 6_1:+1353105 | None:intergenic |
| ACTCGTCATAGTCCAATGTG+AGG | 0.715682 | 6_1:-1353218 | Msa0867990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTATAATTTAA+AGG | - | chr6_1:1356058-1356077 | Msa0867990:intron | 0.0% |
| !! | AATCATATGTATTATATAAT+AGG | + | chr6_1:1353333-1353352 | None:intergenic | 10.0% |
| !! | ATATTTATACTTTAAATGAA+TGG | - | chr6_1:1353617-1353636 | Msa0867990:intron | 10.0% |
| !!! | AATATTTTTTAGTATAAAGA+AGG | + | chr6_1:1353822-1353841 | None:intergenic | 10.0% |
| !!! | ATTTTTGTAAATGTTATTAA+TGG | + | chr6_1:1354206-1354225 | None:intergenic | 10.0% |
| !! | GTAAATTGAATTAAAAAAAT+GGG | + | chr6_1:1355318-1355337 | None:intergenic | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | + | chr6_1:1355317-1355336 | None:intergenic | 10.0% |
| !!! | GTTTGATTTTTTTTTTTTTT+TGG | - | chr6_1:1354904-1354923 | Msa0867990:intron | 10.0% |
| !! | AGTAAATTGAATTAAAAAAA+TGG | - | chr6_1:1355317-1355336 | Msa0867990:intron | 10.0% |
| !!! | CTTCATATAATATATTTTTA+AGG | - | chr6_1:1357387-1357406 | Msa0867990:five_prime_UTR | 10.0% |
| !!! | AATATAAGGAACTTTATTTA+TGG | + | chr6_1:1354330-1354349 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCAAACAAC+AGG | + | chr6_1:1354901-1354920 | None:intergenic | 15.0% |
| !!! | TTTTTGTACCAATTAATTTT+GGG | + | chr6_1:1356111-1356130 | None:intergenic | 15.0% |
| !!! | TTTTTTGTACCAATTAATTT+TGG | + | chr6_1:1356112-1356131 | None:intergenic | 15.0% |
| !! | TATATGCACTTATAAATAAT+AGG | - | chr6_1:1356964-1356983 | Msa0867990:CDS | 15.0% |
| !! | ATATGCACTTATAAATAATA+GGG | - | chr6_1:1356965-1356984 | Msa0867990:CDS | 15.0% |
| !! | AGAAAAAAAAAACAAGAGAA+TGG | + | chr6_1:1353113-1353132 | None:intergenic | 20.0% |
| !!! | TTGGGTTGTTATATAATATA+GGG | + | chr6_1:1353167-1353186 | None:intergenic | 20.0% |
| !! | TACATTACATATATAGTTCT+TGG | - | chr6_1:1353231-1353250 | Msa0867990:CDS | 20.0% |
| !!! | TGTTTTTTGCATTTATTCAT+AGG | - | chr6_1:1353382-1353401 | Msa0867990:CDS | 20.0% |
| !!! | TTTTTTAGTATAAAGAAGGT+TGG | + | chr6_1:1353818-1353837 | None:intergenic | 20.0% |
| !! | TAGATTTCATATTTATCCAA+CGG | + | chr6_1:1354103-1354122 | None:intergenic | 20.0% |
| !! | TTTAACTATCCACTAATTAA+TGG | + | chr6_1:1354600-1354619 | None:intergenic | 20.0% |
| !! | ATATCCATGGATAAAATAAA+CGG | + | chr6_1:1354627-1354646 | None:intergenic | 20.0% |
| !!! | TATTTTATGAGAAAATGCTA+AGG | - | chr6_1:1354784-1354803 | Msa0867990:intron | 20.0% |
| !!! | ATGATTTTCTGTACATTTTT+TGG | + | chr6_1:1355153-1355172 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTCTTTTAGAAAC+AGG | - | chr6_1:1355280-1355299 | Msa0867990:intron | 20.0% |
| !! | AATTAAAAAAATGGAACACA+TGG | - | chr6_1:1355326-1355345 | Msa0867990:intron | 20.0% |
| !! | ATAAAATAAGAGAAATGCTA+GGG | + | chr6_1:1355397-1355416 | None:intergenic | 20.0% |
| !! | TATAAAATAAGAGAAATGCT+AGG | + | chr6_1:1355398-1355417 | None:intergenic | 20.0% |
| !! | AACATCGTTAAAAATGTAAA+AGG | - | chr6_1:1356358-1356377 | Msa0867990:intron | 20.0% |
| !!! | GGTTTTTTCATATTATTTGT+CGG | + | chr6_1:1356439-1356458 | None:intergenic | 20.0% |
| !! | CTTATTTAGATTGAAAGAAA+AGG | - | chr6_1:1356681-1356700 | Msa0867990:intron | 20.0% |
| !!! | ACAATTTTCATATTGTACAA+CGG | - | chr6_1:1356874-1356893 | Msa0867990:intron | 20.0% |
| ! | AAAAAAAAACAAGAGAATGG+TGG | + | chr6_1:1353110-1353129 | None:intergenic | 25.0% |
| ! | TGGGTTGTTATATAATATAG+GGG | + | chr6_1:1353166-1353185 | None:intergenic | 25.0% |
| !! | GTTGGGTTGTTATATAATAT+AGG | + | chr6_1:1353168-1353187 | None:intergenic | 25.0% |
| ! | AGTTCTTGGAACAAAATTAA+TGG | - | chr6_1:1353245-1353264 | Msa0867990:CDS | 25.0% |
| ! | TTTACCAAATCAGAATTAGA+AGG | + | chr6_1:1353291-1353310 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTATTATCTGT+GGG | + | chr6_1:1353500-1353519 | None:intergenic | 25.0% |
| !!! | ACCAGTTTTTTTTTTGTTGA+AGG | - | chr6_1:1353663-1353682 | Msa0867990:intron | 25.0% |
| ! | TCCTTCAACAAAAAAAAAAC+TGG | + | chr6_1:1353667-1353686 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCGATGATCTTTA+TGG | + | chr6_1:1354301-1354320 | None:intergenic | 25.0% |
| !!! | TTTTGCTTAGGAAAGTATTA+AGG | - | chr6_1:1354496-1354515 | Msa0867990:intron | 25.0% |
| ! | TAAATTCCTCGATTAAATAG+CGG | - | chr6_1:1354528-1354547 | Msa0867990:intron | 25.0% |
| !! | TATCCACTAATTAATGGATA+CGG | + | chr6_1:1354594-1354613 | None:intergenic | 25.0% |
| !!! | ATATCCGTTTATTTTATCCA+TGG | - | chr6_1:1354620-1354639 | Msa0867990:intron | 25.0% |
| !! | ATTTTATCCGCAAATATTCA+CGG | - | chr6_1:1354679-1354698 | Msa0867990:intron | 25.0% |
| ! | AATTAAAAAAATGGGACACA+TGG | + | chr6_1:1354855-1354874 | None:intergenic | 25.0% |
| !!! | TTTCTGTACATTTTTTGGAT+CGG | + | chr6_1:1355148-1355167 | None:intergenic | 25.0% |
| !! | TTGGAAATTTTATGATATCG+TGG | + | chr6_1:1355176-1355195 | None:intergenic | 25.0% |
| ! | CTACCTTAAATAATGTTACA+TGG | - | chr6_1:1355223-1355242 | Msa0867990:intron | 25.0% |
| ! | GATCCATGTAACATTATTTA+AGG | + | chr6_1:1355229-1355248 | None:intergenic | 25.0% |
| ! | TAAAATCTTACTTAAGAGTG+TGG | - | chr6_1:1355433-1355452 | Msa0867990:intron | 25.0% |
| ! | TTTCACAAAACCAATTTATG+AGG | + | chr6_1:1355986-1356005 | None:intergenic | 25.0% |
| !!! | ACCAATTAATTTTGGGAAAA+GGG | + | chr6_1:1356104-1356123 | None:intergenic | 25.0% |
| !!! | TACCAATTAATTTTGGGAAA+AGG | + | chr6_1:1356105-1356124 | None:intergenic | 25.0% |
| ! | CAATGAAAAGAAATCATTGT+CGG | - | chr6_1:1356169-1356188 | Msa0867990:intron | 25.0% |
| ! | AATGAAAAGAAATCATTGTC+GGG | - | chr6_1:1356170-1356189 | Msa0867990:intron | 25.0% |
| ! | ACAAATTCAACCAATGATTT+GGG | + | chr6_1:1356505-1356524 | None:intergenic | 25.0% |
| ! | TACAAATTCAACCAATGATT+TGG | + | chr6_1:1356506-1356525 | None:intergenic | 25.0% |
| ! | GAAATCACAAAAAACACAAA+AGG | - | chr6_1:1356633-1356652 | Msa0867990:intron | 25.0% |
| ! | AAAAAAGCTTATAGAGAAGT+TGG | - | chr6_1:1356785-1356804 | Msa0867990:intron | 25.0% |
| ! | AGTTCAAATTACTACAATTG+TGG | - | chr6_1:1357145-1357164 | Msa0867990:intron | 25.0% |
| GGTTGTTATATAATATAGGG+GGG | + | chr6_1:1353164-1353183 | None:intergenic | 30.0% | |
| GGGTTGTTATATAATATAGG+GGG | + | chr6_1:1353165-1353184 | None:intergenic | 30.0% | |
| AAGAATGATAAAGTACAGTG+TGG | + | chr6_1:1353202-1353221 | None:intergenic | 30.0% | |
| TCTTGGAACAAAATTAATGG+AGG | - | chr6_1:1353248-1353267 | Msa0867990:CDS | 30.0% | |
| AACAAAATTAATGGAGGAGT+CGG | - | chr6_1:1353254-1353273 | Msa0867990:CDS | 30.0% | |
| ! | AGATTCTCCATCTTTAAGAA+TGG | + | chr6_1:1353423-1353442 | None:intergenic | 30.0% |
| !!! | GGATCATTATTTTGAAGATC+AGG | - | chr6_1:1353466-1353485 | Msa0867990:intron | 30.0% |
| !!! | CATTATTTTGAAGATCAGGT+TGG | - | chr6_1:1353470-1353489 | Msa0867990:intron | 30.0% |
| ! | GTTTTCCTTTGTATTATCTG+TGG | + | chr6_1:1353501-1353520 | None:intergenic | 30.0% |
| TACAAAGGAAAACAATGAGA+AGG | - | chr6_1:1353508-1353527 | Msa0867990:intron | 30.0% | |
| AGTGACTTAAGATTGAAGAT+AGG | - | chr6_1:1354027-1354046 | Msa0867990:intron | 30.0% | |
| GTGACTTAAGATTGAAGATA+GGG | - | chr6_1:1354028-1354047 | Msa0867990:intron | 30.0% | |
| ATTGAAGATAGGGATGTAAA+TGG | - | chr6_1:1354038-1354057 | Msa0867990:intron | 30.0% | |
| TGTTATTACGCTCCTTTAAA+AGG | + | chr6_1:1354456-1354475 | None:intergenic | 30.0% | |
| AAATTCCTCGATTAAATAGC+GGG | - | chr6_1:1354529-1354548 | Msa0867990:intron | 30.0% | |
| AAAGTCGATACCTTCAATTA+GGG | + | chr6_1:1354724-1354743 | None:intergenic | 30.0% | |
| AAAAGTCGATACCTTCAATT+AGG | + | chr6_1:1354725-1354744 | None:intergenic | 30.0% | |
| !! | TGTTAAAAGAGAGTGTTAGT+GGG | + | chr6_1:1354815-1354834 | None:intergenic | 30.0% |
| ! | TGGCAATTGAGCAATAATTT+TGG | + | chr6_1:1354984-1355003 | None:intergenic | 30.0% |
| TTGATTCAATTCAACACTTG+AGG | - | chr6_1:1355025-1355044 | Msa0867990:intron | 30.0% | |
| ! | CTTTTCACAGAAACAATGAA+CGG | - | chr6_1:1355099-1355118 | Msa0867990:intron | 30.0% |
| !! | AACACATGGCTGATTTTTAT+TGG | - | chr6_1:1355340-1355359 | Msa0867990:intron | 30.0% |
| !! | ACACATGGCTGATTTTTATT+GGG | - | chr6_1:1355341-1355360 | Msa0867990:intron | 30.0% |
| ! | TAAGAGTGTGGTTTAAACAA+AGG | - | chr6_1:1355445-1355464 | Msa0867990:intron | 30.0% |
| !! | ACCTTAAAAATCGGTTTTGT+GGG | - | chr6_1:1355551-1355570 | Msa0867990:intron | 30.0% |
| AGATCCAAACCTATTTAAGA+TGG | - | chr6_1:1355781-1355800 | Msa0867990:intron | 30.0% | |
| GATACCATCTTAAATAGGTT+TGG | + | chr6_1:1355788-1355807 | None:intergenic | 30.0% | |
| GTTCTGATACCATCTTAAAT+AGG | + | chr6_1:1355793-1355812 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+AGG | - | chr6_1:1355519-1355538 | Msa0867990:intron | 30.0% | |
| GACAATGTGTTTATAAGTGA+GGG | - | chr6_1:1355520-1355539 | Msa0867990:intron | 30.0% | |
| !!! | TGGTTTTGTGAAATTGTGTT+AGG | - | chr6_1:1355993-1356012 | Msa0867990:intron | 30.0% |
| ! | ATTGACTTTCTTAGAAATCG+TGG | + | chr6_1:1356024-1356043 | None:intergenic | 30.0% |
| ! | TCCCTTTTCCCAAAATTAAT+TGG | - | chr6_1:1356100-1356119 | Msa0867990:intron | 30.0% |
| ! | CGACAATGATTTCTTTTCAT+TGG | + | chr6_1:1356171-1356190 | None:intergenic | 30.0% |
| ATGAAAAGAAATCATTGTCG+GGG | - | chr6_1:1356171-1356190 | Msa0867990:intron | 30.0% | |
| TGGTTCGTTATACTTTCTAA+AGG | - | chr6_1:1356200-1356219 | Msa0867990:intron | 30.0% | |
| ATCGTTGTATGCTATTAACT+TGG | + | chr6_1:1356410-1356429 | None:intergenic | 30.0% | |
| ! | AGATGTAGATGAGTGATTTT+AGG | - | chr6_1:1356716-1356735 | Msa0867990:intron | 30.0% |
| ATATTGTACAACGGATAAGT+TGG | - | chr6_1:1356883-1356902 | Msa0867990:CDS | 30.0% | |
| TCTCTATATAAATGTGTAGC+TGG | - | chr6_1:1357009-1357028 | Msa0867990:CDS | 30.0% | |
| GATTCAACATTTGTAACGAA+AGG | - | chr6_1:1357113-1357132 | Msa0867990:intron | 30.0% | |
| GTAGTAATTTGAACTCAGTT+TGG | + | chr6_1:1357140-1357159 | None:intergenic | 30.0% | |
| !! | AAGATGAAGATTTTCAAGGT+TGG | + | chr6_1:1357278-1357297 | None:intergenic | 30.0% |
| ! | CTGAAAGATGAAGATTTTCA+AGG | + | chr6_1:1357282-1357301 | None:intergenic | 30.0% |
| ! | AACAGTAGAGTCTTGAATTT+TGG | - | chr6_1:1357307-1357326 | Msa0867990:five_prime_UTR | 30.0% |
| !! | ATTGACTTGTATATGTACCT+TGG | + | chr6_1:1357362-1357381 | None:intergenic | 30.0% |
| TAAAGTACAGTGTGGATAAG+AGG | + | chr6_1:1353194-1353213 | None:intergenic | 35.0% | |
| ACAAAATTAATGGAGGAGTC+GGG | - | chr6_1:1353255-1353274 | Msa0867990:CDS | 35.0% | |
| ! | TTGGCCTTCTAATTCTGATT+TGG | - | chr6_1:1353284-1353303 | Msa0867990:CDS | 35.0% |
| AATAGGTACGTGATTGCAAT+TGG | + | chr6_1:1353316-1353335 | None:intergenic | 35.0% | |
| GATGAAGCCATTCTTAAAGA+TGG | - | chr6_1:1353413-1353432 | Msa0867990:CDS | 35.0% | |
| ! | ATCTGTATGTGATGATGATG+AGG | - | chr6_1:1353445-1353464 | Msa0867990:intron | 35.0% |
| AGATCCCACAGATAATACAA+AGG | - | chr6_1:1353493-1353512 | Msa0867990:intron | 35.0% | |
| TAAATGGATATCCATGGATG+TGG | - | chr6_1:1354054-1354073 | Msa0867990:intron | 35.0% | |
| TATCTGCACGAATATGGATA+AGG | + | chr6_1:1354128-1354147 | None:intergenic | 35.0% | |
| TAAAAGGAAGTGAAAGTGGT+CGG | + | chr6_1:1354440-1354459 | None:intergenic | 35.0% | |
| ! | CCTTTAAAAGGAAGTGAAAG+TGG | + | chr6_1:1354444-1354463 | None:intergenic | 35.0% |
| ! | CCACTTTCACTTCCTTTTAA+AGG | - | chr6_1:1354441-1354460 | Msa0867990:intron | 35.0% |
| TAACAACACTCATAGTACTG+AGG | - | chr6_1:1354471-1354490 | Msa0867990:intron | 35.0% | |
| !!! | AGTACTGAGGTTTTTTGCTT+AGG | - | chr6_1:1354484-1354503 | Msa0867990:intron | 35.0% |
| CATCCGTATCCATTAATTAG+TGG | - | chr6_1:1354588-1354607 | Msa0867990:intron | 35.0% | |
| TTATCCATGGATATCCATTC+AGG | - | chr6_1:1354633-1354652 | Msa0867990:intron | 35.0% | |
| TTTGCATCCGTGAATATTTG+CGG | + | chr6_1:1354689-1354708 | None:intergenic | 35.0% | |
| ! | TTTTTGCCATCCCTAATTGA+AGG | - | chr6_1:1354711-1354730 | Msa0867990:intron | 35.0% |
| !! | GTGTTAAAAGAGAGTGTTAG+TGG | + | chr6_1:1354816-1354835 | None:intergenic | 35.0% |
| !! | GACACATGGCTGATTTTTAT+TGG | + | chr6_1:1354841-1354860 | None:intergenic | 35.0% |
| ! | AGAAGAAGTGTATTGCAGTT+TGG | - | chr6_1:1354948-1354967 | Msa0867990:intron | 35.0% |
| CTGCAATACATAGATATTGC+TGG | + | chr6_1:1355004-1355023 | None:intergenic | 35.0% | |
| !!! | TCGTTTGGATTGCTGTTTTT+TGG | + | chr6_1:1355195-1355214 | None:intergenic | 35.0% |
| AAGGTAGAGTAGATTTCGTT+TGG | + | chr6_1:1355210-1355229 | None:intergenic | 35.0% | |
| !! | TGGTAAAAGAGAGTGTTAGT+GGG | - | chr6_1:1355366-1355385 | Msa0867990:intron | 35.0% |
| GTCATACATCTGATAGAAGA+TGG | - | chr6_1:1355494-1355513 | Msa0867990:intron | 35.0% | |
| GCAATCCTCACCTTAAAAAT+CGG | - | chr6_1:1355542-1355561 | Msa0867990:intron | 35.0% | |
| !!! | CAAAACCGATTTTTAAGGTG+AGG | + | chr6_1:1355550-1355569 | None:intergenic | 35.0% |
| !! | CACCTTAAAAATCGGTTTTG+TGG | - | chr6_1:1355550-1355569 | Msa0867990:intron | 35.0% |
| !! | TCCCACAAAACCGATTTTTA+AGG | + | chr6_1:1355555-1355574 | None:intergenic | 35.0% |
| TGATACCATCTTAGAAATCG+TGG | + | chr6_1:1355593-1355612 | None:intergenic | 35.0% | |
| !! | TTCTAAGATGGTATCAGAGT+TGG | - | chr6_1:1355597-1355616 | Msa0867990:intron | 35.0% |
| ! | TCTAAGATGGTATCAGAGTT+GGG | - | chr6_1:1355598-1355617 | Msa0867990:intron | 35.0% |
| TATTTATATGCTCAACAGCC+CGG | + | chr6_1:1355722-1355741 | None:intergenic | 35.0% | |
| AAAGCTAGCTCAAAGGATAA+AGG | + | chr6_1:1355755-1355774 | None:intergenic | 35.0% | |
| !!! | TTATCCTTTGAGCTAGCTTT+TGG | - | chr6_1:1355755-1355774 | Msa0867990:intron | 35.0% |
| TTCTATCAGGTATCCACTAT+CGG | - | chr6_1:1355837-1355856 | Msa0867990:intron | 35.0% | |
| !! | GTTTGGTTTGTGGACATAAA+TGG | + | chr6_1:1355871-1355890 | None:intergenic | 35.0% |
| GCAATCATCACCTCATAAAT+TGG | - | chr6_1:1355973-1355992 | Msa0867990:intron | 35.0% | |
| TGTAGCTTAAGCAAAGTGAA+AGG | - | chr6_1:1356134-1356153 | Msa0867990:intron | 35.0% | |
| TGAAAAGAAATCATTGTCGG+GGG | - | chr6_1:1356172-1356191 | Msa0867990:intron | 35.0% | |
| ACTGATGTCGATCTTTCAAT+AGG | - | chr6_1:1356530-1356549 | Msa0867990:intron | 35.0% | |
| AAGTGATATTACTCTTCCAG+AGG | - | chr6_1:1357171-1357190 | Msa0867990:CDS | 35.0% | |
| ! | TACCATTTTGTTCCTCACAT+TGG | + | chr6_1:1357237-1357256 | None:intergenic | 35.0% |
| TATATGTACCTTGGCAACAA+TGG | + | chr6_1:1357353-1357372 | None:intergenic | 35.0% | |
| GGTTGTGAAGGTGAGTAATA+TGG | + | chr6_1:1353083-1353102 | None:intergenic | 40.0% | |
| AAACAAGAGAATGGTGGTTG+AGG | + | chr6_1:1353104-1353123 | None:intergenic | 40.0% | |
| ACGAACCTTCTTTAAGCCTA+TGG | + | chr6_1:1353567-1353586 | None:intergenic | 40.0% | |
| AAAGCCATATATCCTCGCAT+GGG | + | chr6_1:1353964-1353983 | None:intergenic | 40.0% | |
| GGGATGTAAATGGATATCCA+TGG | - | chr6_1:1354048-1354067 | Msa0867990:intron | 40.0% | |
| AATCACACTATCCACATCCA+TGG | + | chr6_1:1354068-1354087 | None:intergenic | 40.0% | |
| AACGGATATCTGCACGAATA+TGG | + | chr6_1:1354134-1354153 | None:intergenic | 40.0% | |
| ! | TCCATGGATTACCCACTAAA+CGG | + | chr6_1:1354152-1354171 | None:intergenic | 40.0% |
| ! | TGGGTAATCCATGGATTTTG+CGG | - | chr6_1:1354157-1354176 | Msa0867990:intron | 40.0% |
| ! | CATGGATTTTGCGGTATCAA+CGG | - | chr6_1:1354166-1354185 | Msa0867990:intron | 40.0% |
| ! | ATGGATTTTGCGGTATCAAC+GGG | - | chr6_1:1354167-1354186 | Msa0867990:intron | 40.0% |
| AAAAGGAAGTGAAAGTGGTC+GGG | + | chr6_1:1354439-1354458 | None:intergenic | 40.0% | |
| CTTAATGGTATATGCACCTG+CGG | + | chr6_1:1354564-1354583 | None:intergenic | 40.0% | |
| GATAAAATCCACCACGGATA+CGG | + | chr6_1:1354667-1354686 | None:intergenic | 40.0% | |
| TTTGCGGATAAAATCCACCA+CGG | + | chr6_1:1354673-1354692 | None:intergenic | 40.0% | |
| TCGATACCTTCAATTAGGGA+TGG | + | chr6_1:1354720-1354739 | None:intergenic | 40.0% | |
| TTCACAGAAACAATGAACGG+CGG | - | chr6_1:1355102-1355121 | Msa0867990:intron | 40.0% | |
| !! | CTTTTAGAAACAGGATGAGC+AGG | - | chr6_1:1355289-1355308 | Msa0867990:intron | 40.0% |
| !! | TGGCTGATTTTTATTGGGTG+TGG | - | chr6_1:1355346-1355365 | Msa0867990:intron | 40.0% |
| !! | GTGGTAAAAGAGAGTGTTAG+TGG | - | chr6_1:1355365-1355384 | Msa0867990:intron | 40.0% |
| ! | TCCAACCACGATTTCTAAGA+TGG | - | chr6_1:1355585-1355604 | Msa0867990:intron | 40.0% |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr6_1:1355589-1355608 | None:intergenic | 40.0% | |
| ATGGTATCAGAGTTGGGTTA+AGG | - | chr6_1:1355604-1355623 | Msa0867990:intron | 40.0% | |
| TCATCCAAAAGCTAGCTCAA+AGG | + | chr6_1:1355762-1355781 | None:intergenic | 40.0% | |
| AGAACCTCTTCAAGATCCAT+TGG | - | chr6_1:1355808-1355827 | Msa0867990:intron | 40.0% | |
| !! | GATAGTGGATACCTGATAGA+AGG | + | chr6_1:1355838-1355857 | None:intergenic | 40.0% |
| TCTATCAGGTATCCACTATC+GGG | - | chr6_1:1355838-1355857 | Msa0867990:intron | 40.0% | |
| GGTTTGTGGACATAAATGGT+GGG | + | chr6_1:1355867-1355886 | None:intergenic | 40.0% | |
| ! | TGGTTTGTGGACATAAATGG+TGG | + | chr6_1:1355868-1355887 | None:intergenic | 40.0% |
| GTGAGTTAAGAGTCCTACAT+CGG | - | chr6_1:1355914-1355933 | Msa0867990:intron | 40.0% | |
| ! | CTTGAATTCAAGTCTTGTCG+CGG | + | chr6_1:1356569-1356588 | None:intergenic | 40.0% |
| ! | TTTTTCTCCTTCGTTCATCG+AGG | + | chr6_1:1356769-1356788 | None:intergenic | 40.0% |
| GTCCAATGTGAGGAACAAAA+TGG | - | chr6_1:1357232-1357251 | Msa0867990:five_prime_UTR | 40.0% | |
| !! | GGTTGGTTAGTATTTTGAGC+AGG | + | chr6_1:1357261-1357280 | None:intergenic | 40.0% |
| AATGGTGGTTGAGGTTGTGA+AGG | + | chr6_1:1353095-1353114 | None:intergenic | 45.0% | |
| GTACAGTGTGGATAAGAGGT+GGG | + | chr6_1:1353190-1353209 | None:intergenic | 45.0% | |
| AGTACAGTGTGGATAAGAGG+TGG | + | chr6_1:1353191-1353210 | None:intergenic | 45.0% | |
| AGACGCCATAGGCTTAAAGA+AGG | - | chr6_1:1353559-1353578 | Msa0867990:intron | 45.0% | |
| GATAATAGATACCCCATGCG+AGG | - | chr6_1:1353949-1353968 | Msa0867990:intron | 45.0% | |
| ATACCCCATGCGAGGATATA+TGG | - | chr6_1:1353957-1353976 | Msa0867990:intron | 45.0% | |
| AAGCCATATATCCTCGCATG+GGG | + | chr6_1:1353963-1353982 | None:intergenic | 45.0% | |
| GAAAGCCATATATCCTCGCA+TGG | + | chr6_1:1353965-1353984 | None:intergenic | 45.0% | |
| ! | GATTTTCGTGTATGCTCCGT+TGG | - | chr6_1:1354084-1354103 | Msa0867990:intron | 45.0% |
| TCGTGCAGATATCCGTTTAG+TGG | - | chr6_1:1354137-1354156 | Msa0867990:intron | 45.0% | |
| CGTGCAGATATCCGTTTAGT+GGG | - | chr6_1:1354138-1354157 | Msa0867990:intron | 45.0% | |
| ! | TCCGTTTAGTGGGTAATCCA+TGG | - | chr6_1:1354148-1354167 | Msa0867990:intron | 45.0% |
| CGTTGATACCGCAAAATCCA+TGG | + | chr6_1:1354168-1354187 | None:intergenic | 45.0% | |
| CCATACCCGCTATTTAATCG+AGG | + | chr6_1:1354537-1354556 | None:intergenic | 45.0% | |
| !! | CCTCGATTAAATAGCGGGTA+TGG | - | chr6_1:1354534-1354553 | Msa0867990:intron | 45.0% |
| GGATACGGATGCAGACTTAA+TGG | + | chr6_1:1354579-1354598 | None:intergenic | 45.0% | |
| GAGACCTGAATGGATATCCA+TGG | + | chr6_1:1354640-1354659 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTGGGATTGTGTT+AGG | - | chr6_1:1355562-1355581 | Msa0867990:intron | 45.0% |
| TTGGGTTAAGGTTTGCGTTG+TGG | - | chr6_1:1355616-1355635 | Msa0867990:intron | 45.0% | |
| TGGGTTAAGGTTTGCGTTGT+GGG | - | chr6_1:1355617-1355636 | Msa0867990:intron | 45.0% | |
| TTGTTTGTCTCACATCCCAC+AGG | - | chr6_1:1355693-1355712 | Msa0867990:intron | 45.0% | |
| TGGTCCAATGGATCTTGAAG+AGG | + | chr6_1:1355815-1355834 | None:intergenic | 45.0% | |
| AGTGGATACCTGATAGAAGG+TGG | + | chr6_1:1355835-1355854 | None:intergenic | 45.0% | |
| ! | TTGTGGACATAAATGGTGGG+CGG | + | chr6_1:1355864-1355883 | None:intergenic | 45.0% |
| GTCCTACATCGGATAGATCA+TGG | - | chr6_1:1355925-1355944 | Msa0867990:intron | 45.0% | |
| GACCATGATCTATCCGATGT+AGG | + | chr6_1:1355930-1355949 | None:intergenic | 45.0% | |
| AACGTTGACGCCCAAATCAT+TGG | - | chr6_1:1356492-1356511 | Msa0867990:intron | 45.0% | |
| GTGTAGTTAGTCGTCTTGTG+CGG | + | chr6_1:1356594-1356613 | None:intergenic | 45.0% | |
| GTGATTTCGTCGTCTAAGTG+CGG | + | chr6_1:1356621-1356640 | None:intergenic | 45.0% | |
| AGAGAGCTAGAACAAGAAGC+TGG | - | chr6_1:1357091-1357110 | Msa0867990:intron | 45.0% | |
| AACACTCTTGCTTTGACCTC+TGG | + | chr6_1:1357190-1357209 | None:intergenic | 45.0% | |
| ACTCGTCATAGTCCAATGTG+AGG | - | chr6_1:1357222-1357241 | Msa0867990:five_prime_UTR | 45.0% | |
| ! | AACAATGGTGATGTCAAGGG+TGG | + | chr6_1:1357338-1357357 | None:intergenic | 45.0% |
| ! | GGCAACAATGGTGATGTCAA+GGG | + | chr6_1:1357341-1357360 | None:intergenic | 45.0% |
| ! | TGGCAACAATGGTGATGTCA+AGG | + | chr6_1:1357342-1357361 | None:intergenic | 45.0% |
| TGACATCACCATTGTTGCCA+AGG | - | chr6_1:1357342-1357361 | Msa0867990:five_prime_UTR | 45.0% | |
| !!! | TATTATTTTTTAAATAAAGT+AGG | - | chr6_1:1353893-1353912 | Msa0867990:intron | 5.0% |
| !!! | ATTATTTTTTAAATAAAGTA+GGG | - | chr6_1:1353894-1353913 | Msa0867990:intron | 5.0% |
| !!! | CTTTATTTTTATTAAATATA+AGG | + | chr6_1:1354344-1354363 | None:intergenic | 5.0% |
| !!! | TTCATATAATATATTTTTAA+GGG | - | chr6_1:1357388-1357407 | Msa0867990:five_prime_UTR | 5.0% |
| ! | GTGTGGATAAGAGGTGGGTT+GGG | + | chr6_1:1353185-1353204 | None:intergenic | 50.0% |
| AGTGTGGATAAGAGGTGGGT+TGG | + | chr6_1:1353186-1353205 | None:intergenic | 50.0% | |
| TGGAGGAGTCGGGAGAAAAT+TGG | - | chr6_1:1353265-1353284 | Msa0867990:CDS | 50.0% | |
| GGAGATCACAGAGATGTTGC+AGG | - | chr6_1:1353529-1353548 | Msa0867990:intron | 50.0% | |
| CAGGAACTTTCAGACGCCAT+AGG | - | chr6_1:1353548-1353567 | Msa0867990:intron | 50.0% | |
| ATACGGAGTGGAGACCTGAA+TGG | + | chr6_1:1354650-1354669 | None:intergenic | 50.0% | |
| ACAGAAACAATGAACGGCGG+TGG | - | chr6_1:1355105-1355124 | Msa0867990:intron | 50.0% | |
| GGGTTAAGGTTTGCGTTGTG+GGG | - | chr6_1:1355618-1355637 | Msa0867990:intron | 50.0% | |
| TCTCACATCCCACAGGTTTC+CGG | - | chr6_1:1355700-1355719 | Msa0867990:intron | 50.0% | |
| CCTGATAGAAGGTGGTCCAA+TGG | + | chr6_1:1355827-1355846 | None:intergenic | 50.0% | |
| CCATTGGACCACCTTCTATC+AGG | - | chr6_1:1355824-1355843 | Msa0867990:intron | 50.0% | |
| !! | GCACTATCGGGTTTGGTTTG+TGG | + | chr6_1:1355881-1355900 | None:intergenic | 50.0% |
| CAAACCAAACCCGATAGTGC+TGG | - | chr6_1:1355881-1355900 | Msa0867990:intron | 50.0% | |
| AATCATTGTCGGGGGTCAGT+TGG | - | chr6_1:1356180-1356199 | Msa0867990:intron | 50.0% | |
| GCGTGGGTATTTCGTGACTT+AGG | + | chr6_1:1356460-1356479 | None:intergenic | 50.0% | |
| ! | CATCGAGGAGGGGTAGTTTT+AGG | + | chr6_1:1356754-1356773 | None:intergenic | 50.0% |
| TCTCCTTCGTTCATCGAGGA+GGG | + | chr6_1:1356765-1356784 | None:intergenic | 50.0% | |
| TTCTCCTTCGTTCATCGAGG+AGG | + | chr6_1:1356766-1356785 | None:intergenic | 50.0% | |
| ! | TAGCGGGTATGGATATCCGC+AGG | - | chr6_1:1354545-1354564 | Msa0867990:intron | 55.0% |
| AATCCACCACGGATACGGAG+TGG | + | chr6_1:1354662-1354681 | None:intergenic | 55.0% | |
| !! | AGAGCGAGAGCACTGCATCT+AGG | + | chr6_1:1355073-1355092 | None:intergenic | 55.0% |
| GAAACAATGAACGGCGGTGG+TGG | - | chr6_1:1355108-1355127 | Msa0867990:intron | 55.0% | |
| GGTTTGCGTTGTGGGGATTC+AGG | - | chr6_1:1355625-1355644 | Msa0867990:intron | 55.0% | |
| CTCACATCCCACAGGTTTCC+GGG | - | chr6_1:1355701-1355720 | Msa0867990:intron | 55.0% | |
| TCAACAGCCCGGAAACCTGT+GGG | + | chr6_1:1355711-1355730 | None:intergenic | 55.0% | |
| ACGACCAGCACTATCGGGTT+TGG | + | chr6_1:1355888-1355907 | None:intergenic | 55.0% | |
| CCTTCACGACCAGCACTATC+GGG | + | chr6_1:1355893-1355912 | None:intergenic | 55.0% | |
| CCCTTCACGACCAGCACTAT+CGG | + | chr6_1:1355894-1355913 | None:intergenic | 55.0% | |
| !! | CCGATAGTGCTGGTCGTGAA+GGG | - | chr6_1:1355891-1355910 | Msa0867990:intron | 55.0% |
| !! | CGATAGTGCTGGTCGTGAAG+GGG | - | chr6_1:1355892-1355911 | Msa0867990:intron | 55.0% |
| CGTTGCAGATCTGTGAGCGT+GGG | + | chr6_1:1356476-1356495 | None:intergenic | 55.0% | |
| ACGTTGCAGATCTGTGAGCG+TGG | + | chr6_1:1356477-1356496 | None:intergenic | 55.0% | |
| TACCCCTCCTCGATGAACGA+AGG | - | chr6_1:1356759-1356778 | Msa0867990:intron | 55.0% | |
| CTCCTTCGTTCATCGAGGAG+GGG | + | chr6_1:1356764-1356783 | None:intergenic | 55.0% | |
| AGGTCTCCACTCCGTATCCG+TGG | - | chr6_1:1354653-1354672 | Msa0867990:intron | 60.0% | |
| TCTCCACTCCGTATCCGTGG+TGG | - | chr6_1:1354656-1354675 | Msa0867990:intron | 60.0% | |
| ! | ACAATGAACGGCGGTGGTGG+CGG | - | chr6_1:1355111-1355130 | Msa0867990:intron | 60.0% |
| CTCAACAGCCCGGAAACCTG+TGG | + | chr6_1:1355712-1355731 | None:intergenic | 60.0% | |
| !! | CCCGATAGTGCTGGTCGTGA+AGG | - | chr6_1:1355890-1355909 | Msa0867990:intron | 60.0% |
| ! | CAATGAACGGCGGTGGTGGC+GGG | - | chr6_1:1355112-1355131 | Msa0867990:intron | 65.0% |
| TGGGGATTCAGGCCCACGCT+AGG | - | chr6_1:1355636-1355655 | Msa0867990:intron | 65.0% | |
| TCAGGCCCACGCTAGGCATG+AGG | - | chr6_1:1355643-1355662 | Msa0867990:intron | 65.0% | |
| CAGGCCCACGCTAGGCATGA+GGG | - | chr6_1:1355644-1355663 | Msa0867990:intron | 65.0% | |
| CCCACCCTCATGCCTAGCGT+GGG | + | chr6_1:1355651-1355670 | None:intergenic | 65.0% | |
| CCCACGCTAGGCATGAGGGT+GGG | - | chr6_1:1355648-1355667 | Msa0867990:intron | 65.0% | |
| ACCCACCCTCATGCCTAGCG+TGG | + | chr6_1:1355652-1355671 | None:intergenic | 65.0% | |
| !! | AATGGTGGGCGGCCCGATAG+TGG | + | chr6_1:1355853-1355872 | None:intergenic | 65.0% |
| GCCCACGCTAGGCATGAGGG+TGG | - | chr6_1:1355647-1355666 | Msa0867990:intron | 70.0% | |
| !! | CGGCGGTGGTGGCGGGATCT+AGG | - | chr6_1:1355119-1355138 | Msa0867990:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1353049 | 1357413 | 1353049 | ID=Msa0867990;Name=Msa0867990 |
| chr6_1 | mRNA | 1353049 | 1357413 | 1353049 | ID=Msa0867990-mRNA-1;Parent=Msa0867990;Name=Msa0867990-mRNA-1;_AED=0.18;_eAED=0.18;_QI=215|1|1|1|1|1|3|17|195 |
| chr6_1 | exon | 1353049 | 1353434 | 1353049 | ID=Msa0867990-mRNA-1:exon:360;Parent=Msa0867990-mRNA-1 |
| chr6_1 | exon | 1356882 | 1357058 | 1356882 | ID=Msa0867990-mRNA-1:exon:359;Parent=Msa0867990-mRNA-1 |
| chr6_1 | exon | 1357157 | 1357413 | 1357157 | ID=Msa0867990-mRNA-1:exon:358;Parent=Msa0867990-mRNA-1 |
| chr6_1 | five_prime_UTR | 1357199 | 1357413 | 1357199 | ID=Msa0867990-mRNA-1:five_prime_utr;Parent=Msa0867990-mRNA-1 |
| chr6_1 | CDS | 1357157 | 1357198 | 1357157 | ID=Msa0867990-mRNA-1:cds;Parent=Msa0867990-mRNA-1 |
| chr6_1 | CDS | 1356882 | 1357058 | 1356882 | ID=Msa0867990-mRNA-1:cds;Parent=Msa0867990-mRNA-1 |
| chr6_1 | CDS | 1353066 | 1353434 | 1353066 | ID=Msa0867990-mRNA-1:cds;Parent=Msa0867990-mRNA-1 |
| chr6_1 | three_prime_UTR | 1353049 | 1353065 | 1353049 | ID=Msa0867990-mRNA-1:three_prime_utr;Parent=Msa0867990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
