AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268460 MtrunA17_Chr4g0015801 81.301 123 10 3 112 221 1 123 1.10e-49 158
Msa0268460 MtrunA17_CPg0492771 81.301 123 10 3 112 221 1 123 1.10e-49 158
Msa0268460 MtrunA17_Chr6g0466591 88.889 90 6 1 112 197 1 90 8.58e-48 153
Msa0268460 MtrunA17_Chr4g0016891 86.957 92 8 2 112 199 1 92 7.53e-45 145
Msa0268460 MtrunA17_Chr7g0237831 94.667 75 2 1 112 184 1 75 1.37e-40 133
Msa0268460 MtrunA17_CPg0492781 98.182 55 1 0 46 100 7 61 1.21e-34 118
Msa0268460 MtrunA17_Chr4g0015791 98.182 55 1 0 46 100 7 61 1.21e-34 118
Msa0268460 MtrunA17_Chr8g0355601 96.364 55 2 0 46 100 7 61 5.97e-34 116
Msa0268460 MtrunA17_Chr6g0465781 96.610 59 2 0 112 170 1 59 6.67e-33 113
Msa0268460 MtrunA17_Chr7g0224991 97.368 38 1 0 62 99 6 43 1.84e-21 83.6
Msa0268460 MtrunA17_CPg0492791 93.750 32 2 0 15 46 1 32 1.99e-14 65.1
Msa0268460 MtrunA17_Chr4g0015781 93.750 32 2 0 15 46 1 32 1.99e-14 65.1
Msa0268460 MtrunA17_Chr4g0028951 93.750 32 2 0 15 46 1 32 1.99e-14 65.1
Msa0268460 MtrunA17_Chr8g0355611 93.750 32 2 0 15 46 1 32 1.99e-14 65.1
Msa0268460 MtrunA17_Chr4g0016881 100.000 30 0 0 15 44 1 30 3.10e-14 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268460 ATCG00650.1 70.909 110 23 2 112 221 1 101 3.58e-43 141
Msa0268460 ATCG00640.1 74.545 55 14 0 46 100 7 61 3.47e-26 96.7
Msa0268460 ATCG00630.1 84.375 32 5 0 15 46 1 32 5.76e-12 58.9

Find 21 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACGAATAACTGTTATTT+TGG 0.125276 2_2:+70233106 Msa0268460:CDS
AGAGTGTTAATAAGGAATCT+AGG 0.329597 2_2:+70233150 Msa0268460:CDS
AATCGTATGTTTGCAACAAA+AGG 0.396841 2_2:-70233246 None:intergenic
CACCAGTGGCAAGTACTCTA+TGG 0.426592 2_2:+70232480 Msa0268460:CDS
GAGTGTTAATAAGGAATCTA+GGG 0.452009 2_2:+70233151 Msa0268460:CDS
AGTTTGTCCCCGATCCAATC+GGG 0.455483 2_2:+70233546 Msa0268460:CDS
GAGTTTGTCCCCGATCCAAT+CGG 0.465376 2_2:+70233545 Msa0268460:CDS
CTATGGTTCGCGGTTCTAGC+AGG 0.487956 2_2:+70232497 Msa0268460:CDS
AAAGGTGACGAATTAACAAA+AGG 0.521079 2_2:-70233720 None:intergenic
ACACAATACACCTAGTCGAT+TGG 0.524208 2_2:+70233205 Msa0268460:CDS
GGCAAGTACTCTATGGTTCG+CGG 0.527936 2_2:+70232487 Msa0268460:CDS
ATCGTATGTTTGCAACAAAA+GGG 0.538893 2_2:-70233245 None:intergenic
TTTCTCAATTCCAATCGACT+AGG 0.574270 2_2:-70233215 None:intergenic
ATATCTCTCTGTGGCACCAG+TGG 0.585814 2_2:+70232466 Msa0268460:CDS
GAGTCGCTTAGATTTATCCA+TGG 0.585856 2_2:-70233493 None:intergenic
AACCATAGAGTACTTGCCAC+TGG 0.586013 2_2:-70232482 None:intergenic
GTATAGGAATAAACAAACCA+TGG 0.629025 2_2:+70233476 Msa0268460:CDS
TATCGACTTATTAGTCAACA+AGG 0.637963 2_2:+70233603 Msa0268460:CDS
GTTTGTCCCCGATCCAATCG+GGG 0.647747 2_2:+70233547 Msa0268460:CDS
TTTGTCCCCGATCCAATCGG+GGG 0.661952 2_2:+70233548 Msa0268460:CDS
AGTGTTAATAAGGAATCTAG+GGG 0.667965 2_2:+70233152 Msa0268460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTAGAATCAAAAAAA+GGG - chr2_2:70232569-70232588 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG + chr2_2:70232692-70232711 Msa0268460:intron 15.0%
!! TATTATTAAATTCATAGCAA+TGG - chr2_2:70232786-70232805 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG + chr2_2:70232942-70232961 Msa0268460:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG + chr2_2:70233445-70233464 Msa0268460:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG + chr2_2:70233446-70233465 Msa0268460:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG - chr2_2:70233741-70233760 None:intergenic 15.0%
!! AATAACTAGAATCAAAAAAA+GGG - chr2_2:70232569-70232588 None:intergenic 15.0%
!! AGAGCAAATTAATTTAATAA+AGG + chr2_2:70232692-70232711 Msa0268460:intron 15.0%
!! TATTATTAAATTCATAGCAA+TGG - chr2_2:70232786-70232805 None:intergenic 15.0%
!! CTGTACTATATAAAATTAAT+TGG + chr2_2:70232942-70232961 Msa0268460:intron 15.0%
!!! AATCCTTTTTTTATAAGAAA+TGG + chr2_2:70233445-70233464 Msa0268460:intron 15.0%
!!! ATCCTTTTTTTATAAGAAAT+GGG + chr2_2:70233446-70233465 Msa0268460:intron 15.0%
!!! TTTTTTTCATTATTCACAAA+AGG - chr2_2:70233741-70233760 None:intergenic 15.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG - chr2_2:70232417-70232436 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG + chr2_2:70232416-70232435 Msa0268460:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG - chr2_2:70232568-70232587 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG - chr2_2:70232570-70232589 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG + chr2_2:70232568-70232587 Msa0268460:intron 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG - chr2_2:70232623-70232642 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG + chr2_2:70232695-70232714 Msa0268460:intron 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG + chr2_2:70232701-70232720 Msa0268460:intron 20.0%
!! TTCTATTACAATTCCATTTA+TGG - chr2_2:70232817-70232836 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG + chr2_2:70233106-70233125 Msa0268460:CDS 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG + chr2_2:70233142-70233161 Msa0268460:CDS 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG + chr2_2:70233276-70233295 Msa0268460:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG - chr2_2:70233451-70233470 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG + chr2_2:70233454-70233473 Msa0268460:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG - chr2_2:70233661-70233680 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG - chr2_2:70233798-70233817 None:intergenic 20.0%
!!! TTCGTTTTTTTCTTGTAATT+TGG - chr2_2:70232417-70232436 None:intergenic 20.0%
!! AAATTACAAGAAAAAAACGA+AGG + chr2_2:70232416-70232435 Msa0268460:CDS 20.0%
!! ATAACTAGAATCAAAAAAAG+GGG - chr2_2:70232568-70232587 None:intergenic 20.0%
!! CAATAACTAGAATCAAAAAA+AGG - chr2_2:70232570-70232589 None:intergenic 20.0%
!!! CTTTTTTTGATTCTAGTTAT+TGG + chr2_2:70232568-70232587 Msa0268460:intron 20.0%
!!! AGAGGGATTTAATATTTTAT+TGG - chr2_2:70232623-70232642 None:intergenic 20.0%
!! GCAAATTAATTTAATAAAGG+TGG + chr2_2:70232695-70232714 Msa0268460:intron 20.0%
!!! TAATTTAATAAAGGTGGATT+TGG + chr2_2:70232701-70232720 Msa0268460:intron 20.0%
!! TTCTATTACAATTCCATTTA+TGG - chr2_2:70232817-70232836 None:intergenic 20.0%
!!! TATACGAATAACTGTTATTT+TGG + chr2_2:70233106-70233125 Msa0268460:CDS 20.0%
!!! TGATAAAAAGAGTGTTAATA+AGG + chr2_2:70233142-70233161 Msa0268460:CDS 20.0%
!! AGATAAAGAAATAGAGAAAA+TGG + chr2_2:70233276-70233295 Msa0268460:intron 20.0%
!! ATCCCATTTCTTATAAAAAA+AGG - chr2_2:70233451-70233470 None:intergenic 20.0%
!!! TTTATAAGAAATGGGATTTT+CGG + chr2_2:70233454-70233473 Msa0268460:intron 20.0%
!!! AATTAATCGTTGTTGTTTTA+AGG - chr2_2:70233661-70233680 None:intergenic 20.0%
!!! TTTTTTTTTAGAACAGTAGT+AGG - chr2_2:70233798-70233817 None:intergenic 20.0%
! AAAAAAAAAACGAACGAAGA+GGG - chr2_2:70232640-70232659 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG - chr2_2:70232641-70232660 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG + chr2_2:70232821-70232840 Msa0268460:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG + chr2_2:70232822-70232841 Msa0268460:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG + chr2_2:70233060-70233079 Msa0268460:intron 25.0%
! TTATAGAATTTACCTCCTAA+GGG - chr2_2:70233317-70233336 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG - chr2_2:70233318-70233337 None:intergenic 25.0%
! AAAAAAAAAACGAACGAAGA+GGG - chr2_2:70232640-70232659 None:intergenic 25.0%
! AAAAAAAAAAACGAACGAAG+AGG - chr2_2:70232641-70232660 None:intergenic 25.0%
! TGGAATTGTAATAGAATACT+TGG + chr2_2:70232821-70232840 Msa0268460:intron 25.0%
! GGAATTGTAATAGAATACTT+GGG + chr2_2:70232822-70232841 Msa0268460:intron 25.0%
! AGTGAATCAAAAAAAACCAA+AGG + chr2_2:70233060-70233079 Msa0268460:intron 25.0%
! TTATAGAATTTACCTCCTAA+GGG - chr2_2:70233317-70233336 None:intergenic 25.0%
! TTTATAGAATTTACCTCCTA+AGG - chr2_2:70233318-70233337 None:intergenic 25.0%
TTACAAGAAAAAAACGAAGG+AGG + chr2_2:70232419-70232438 Msa0268460:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG + chr2_2:70232457-70232476 Msa0268460:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG + chr2_2:70232529-70232548 Msa0268460:intron 30.0%
! TTTGATTCTAGTTATTGGCA+CGG + chr2_2:70232573-70232592 Msa0268460:intron 30.0%
AAAAACTCCTAATTTCACTG+AGG - chr2_2:70232727-70232746 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG + chr2_2:70232801-70232820 Msa0268460:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG + chr2_2:70232825-70232844 Msa0268460:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG + chr2_2:70233063-70233082 Msa0268460:intron 30.0%
TATTCGTATATCTTTACCCT+TGG - chr2_2:70233096-70233115 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG + chr2_2:70233150-70233169 Msa0268460:CDS 30.0%
GAGTGTTAATAAGGAATCTA+GGG + chr2_2:70233151-70233170 Msa0268460:CDS 30.0%
AGTGTTAATAAGGAATCTAG+GGG + chr2_2:70233152-70233171 Msa0268460:CDS 30.0%
ATCGTATGTTTGCAACAAAA+GGG - chr2_2:70233248-70233267 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG - chr2_2:70233249-70233268 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG + chr2_2:70233476-70233495 Msa0268460:CDS 30.0%
! AATCTAAGCAATCTTTTCGT+AGG + chr2_2:70233523-70233542 Msa0268460:CDS 30.0%
!! TATCGACTTATTAGTCAACA+AGG + chr2_2:70233603-70233622 Msa0268460:CDS 30.0%
AAAGGTGACGAATTAACAAA+AGG - chr2_2:70233723-70233742 None:intergenic 30.0%
TTACAAGAAAAAAACGAAGG+AGG + chr2_2:70232419-70232438 Msa0268460:CDS 30.0%
TCTAAAAACATATCTCTCTG+TGG + chr2_2:70232457-70232476 Msa0268460:CDS 30.0%
AGAAATCAATCGTTTATTCC+CGG + chr2_2:70232529-70232548 Msa0268460:intron 30.0%
! TTTGATTCTAGTTATTGGCA+CGG + chr2_2:70232573-70232592 Msa0268460:intron 30.0%
AAAAACTCCTAATTTCACTG+AGG - chr2_2:70232727-70232746 None:intergenic 30.0%
TAATAGAGTGAGACCATAAA+TGG + chr2_2:70232801-70232820 Msa0268460:intron 30.0%
ATTGTAATAGAATACTTGGG+CGG + chr2_2:70232825-70232844 Msa0268460:intron 30.0%
GAATCAAAAAAAACCAAAGG+AGG + chr2_2:70233063-70233082 Msa0268460:intron 30.0%
TATTCGTATATCTTTACCCT+TGG - chr2_2:70233096-70233115 None:intergenic 30.0%
! AGAGTGTTAATAAGGAATCT+AGG + chr2_2:70233150-70233169 Msa0268460:CDS 30.0%
GAGTGTTAATAAGGAATCTA+GGG + chr2_2:70233151-70233170 Msa0268460:CDS 30.0%
AGTGTTAATAAGGAATCTAG+GGG + chr2_2:70233152-70233171 Msa0268460:CDS 30.0%
ATCGTATGTTTGCAACAAAA+GGG - chr2_2:70233248-70233267 None:intergenic 30.0%
AATCGTATGTTTGCAACAAA+AGG - chr2_2:70233249-70233268 None:intergenic 30.0%
GTATAGGAATAAACAAACCA+TGG + chr2_2:70233476-70233495 Msa0268460:CDS 30.0%
! AATCTAAGCAATCTTTTCGT+AGG + chr2_2:70233523-70233542 Msa0268460:CDS 30.0%
!! TATCGACTTATTAGTCAACA+AGG + chr2_2:70233603-70233622 Msa0268460:CDS 30.0%
AAAGGTGACGAATTAACAAA+AGG - chr2_2:70233723-70233742 None:intergenic 30.0%
! TGAAATTAGGAGTTTTTCCC+AGG + chr2_2:70232730-70232749 Msa0268460:intron 35.0%
CTTCAATTCCATTGAAACCT+GGG - chr2_2:70232750-70232769 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG - chr2_2:70232751-70232770 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG + chr2_2:70232826-70232845 Msa0268460:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG - chr2_2:70233021-70233040 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG + chr2_2:70233070-70233089 Msa0268460:intron 35.0%
TTTCTCAATTCCAATCGACT+AGG - chr2_2:70233218-70233237 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG + chr2_2:70233460-70233479 Msa0268460:intron 35.0%
! TGAAATTAGGAGTTTTTCCC+AGG + chr2_2:70232730-70232749 Msa0268460:intron 35.0%
CTTCAATTCCATTGAAACCT+GGG - chr2_2:70232750-70232769 None:intergenic 35.0%
ACTTCAATTCCATTGAAACC+TGG - chr2_2:70232751-70232770 None:intergenic 35.0%
TTGTAATAGAATACTTGGGC+GGG + chr2_2:70232826-70232845 Msa0268460:intron 35.0%
TTCGAAGCGAAGAAGAAAAA+AGG - chr2_2:70233021-70233040 None:intergenic 35.0%
AAAAAACCAAAGGAGGTTCA+TGG + chr2_2:70233070-70233089 Msa0268460:intron 35.0%
TTTCTCAATTCCAATCGACT+AGG - chr2_2:70233218-70233237 None:intergenic 35.0%
! AGAAATGGGATTTTCGGTAT+AGG + chr2_2:70233460-70233479 Msa0268460:intron 35.0%
GATTTGGCCTCAGTGAAATT+AGG + chr2_2:70232717-70232736 Msa0268460:intron 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG + chr2_2:70232739-70232758 Msa0268460:intron 40.0%
ACACAATACACCTAGTCGAT+TGG + chr2_2:70233205-70233224 Msa0268460:CDS 40.0%
ATTGTTTGTGTGTCACCCTT+AGG + chr2_2:70233299-70233318 Msa0268460:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG - chr2_2:70233496-70233515 None:intergenic 40.0%
GATTTGGCCTCAGTGAAATT+AGG + chr2_2:70232717-70232736 Msa0268460:intron 40.0%
! GAGTTTTTCCCAGGTTTCAA+TGG + chr2_2:70232739-70232758 Msa0268460:intron 40.0%
ACACAATACACCTAGTCGAT+TGG + chr2_2:70233205-70233224 Msa0268460:CDS 40.0%
ATTGTTTGTGTGTCACCCTT+AGG + chr2_2:70233299-70233318 Msa0268460:intron 40.0%
GAGTCGCTTAGATTTATCCA+TGG - chr2_2:70233496-70233515 None:intergenic 40.0%
! AACCATAGAGTACTTGCCAC+TGG - chr2_2:70232485-70232504 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG - chr2_2:70232551-70232570 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG + chr2_2:70232578-70232597 Msa0268460:intron 45.0%
TCTAGTTATTGGCACGGCAA+GGG + chr2_2:70232579-70232598 Msa0268460:intron 45.0%
AATCAATTCGATCCCCCGAT+TGG - chr2_2:70233563-70233582 None:intergenic 45.0%
! AACCATAGAGTACTTGCCAC+TGG - chr2_2:70232485-70232504 None:intergenic 45.0%
AAGGGGAATGTCAATGCATC+CGG - chr2_2:70232551-70232570 None:intergenic 45.0%
! TTCTAGTTATTGGCACGGCA+AGG + chr2_2:70232578-70232597 Msa0268460:intron 45.0%
TCTAGTTATTGGCACGGCAA+GGG + chr2_2:70232579-70232598 Msa0268460:intron 45.0%
AATCAATTCGATCCCCCGAT+TGG - chr2_2:70233563-70233582 None:intergenic 45.0%
!!! ATATTTATATTTGTTATATA+AGG - chr2_2:70233390-70233409 None:intergenic 5.0%
!!! ATATTTATATTTGTTATATA+AGG - chr2_2:70233390-70233409 None:intergenic 5.0%
ATATCTCTCTGTGGCACCAG+TGG + chr2_2:70232466-70232485 Msa0268460:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG + chr2_2:70232480-70232499 Msa0268460:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG + chr2_2:70232487-70232506 Msa0268460:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG - chr2_2:70232550-70232569 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG + chr2_2:70232580-70232599 Msa0268460:intron 50.0%
CAAAGGAGGTTCATGGCCAA+GGG + chr2_2:70233077-70233096 Msa0268460:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG + chr2_2:70233302-70233321 Msa0268460:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG + chr2_2:70233545-70233564 Msa0268460:CDS 50.0%
AGTTTGTCCCCGATCCAATC+GGG + chr2_2:70233546-70233565 Msa0268460:CDS 50.0%
ATTCGATCCCCCGATTGGAT+CGG - chr2_2:70233558-70233577 None:intergenic 50.0%
ATATCTCTCTGTGGCACCAG+TGG + chr2_2:70232466-70232485 Msa0268460:CDS 50.0%
CACCAGTGGCAAGTACTCTA+TGG + chr2_2:70232480-70232499 Msa0268460:CDS 50.0%
GGCAAGTACTCTATGGTTCG+CGG + chr2_2:70232487-70232506 Msa0268460:CDS 50.0%
AGGGGAATGTCAATGCATCC+GGG - chr2_2:70232550-70232569 None:intergenic 50.0%
CTAGTTATTGGCACGGCAAG+GGG + chr2_2:70232580-70232599 Msa0268460:intron 50.0%
CAAAGGAGGTTCATGGCCAA+GGG + chr2_2:70233077-70233096 Msa0268460:intron 50.0%
GTTTGTGTGTCACCCTTAGG+AGG + chr2_2:70233302-70233321 Msa0268460:intron 50.0%
GAGTTTGTCCCCGATCCAAT+CGG + chr2_2:70233545-70233564 Msa0268460:CDS 50.0%
AGTTTGTCCCCGATCCAATC+GGG + chr2_2:70233546-70233565 Msa0268460:CDS 50.0%
ATTCGATCCCCCGATTGGAT+CGG - chr2_2:70233558-70233577 None:intergenic 50.0%
! CTATGGTTCGCGGTTCTAGC+AGG + chr2_2:70232497-70232516 Msa0268460:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG - chr2_2:70233079-70233098 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG + chr2_2:70233076-70233095 Msa0268460:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG + chr2_2:70233547-70233566 Msa0268460:CDS 55.0%
TTTGTCCCCGATCCAATCGG+GGG + chr2_2:70233548-70233567 Msa0268460:CDS 55.0%
TTCGATCCCCCGATTGGATC+GGG - chr2_2:70233557-70233576 None:intergenic 55.0%
! CTATGGTTCGCGGTTCTAGC+AGG + chr2_2:70232497-70232516 Msa0268460:CDS 55.0%
CCTTGGCCATGAACCTCCTT+TGG - chr2_2:70233079-70233098 None:intergenic 55.0%
CCAAAGGAGGTTCATGGCCA+AGG + chr2_2:70233076-70233095 Msa0268460:intron 55.0%
GTTTGTCCCCGATCCAATCG+GGG + chr2_2:70233547-70233566 Msa0268460:CDS 55.0%
TTTGTCCCCGATCCAATCGG+GGG + chr2_2:70233548-70233567 Msa0268460:CDS 55.0%
TTCGATCCCCCGATTGGATC+GGG - chr2_2:70233557-70233576 None:intergenic 55.0%
TCGATCCCCCGATTGGATCG+GGG - chr2_2:70233556-70233575 None:intergenic 60.0%
TCGATCCCCCGATTGGATCG+GGG - chr2_2:70233556-70233575 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70232407 70233827 70232407 ID=Msa0268460;Name=Msa0268460
chr2_2 mRNA 70232407 70233827 70232407 ID=Msa0268460-mRNA-1;Parent=Msa0268460;Name=Msa0268460-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|3|0|221
chr2_2 exon 70232407 70232539 70232407 ID=Msa0268460-mRNA-1:exon:22533;Parent=Msa0268460-mRNA-1
chr2_2 exon 70233105 70233271 70233105 ID=Msa0268460-mRNA-1:exon:22534;Parent=Msa0268460-mRNA-1
chr2_2 exon 70233462 70233827 70233462 ID=Msa0268460-mRNA-1:exon:22535;Parent=Msa0268460-mRNA-1
chr2_2 CDS 70232407 70232539 70232407 ID=Msa0268460-mRNA-1:cds;Parent=Msa0268460-mRNA-1
chr2_2 CDS 70233105 70233271 70233105 ID=Msa0268460-mRNA-1:cds;Parent=Msa0268460-mRNA-1
chr2_2 CDS 70233462 70233827 70233462 ID=Msa0268460-mRNA-1:cds;Parent=Msa0268460-mRNA-1
Gene Sequence

>Msa0268460

ATGTATTCCAAATTACAAGAAAAAAACGAAGGAGGATTTGAAATGCGAGATCTAAAAACATATCTCTCTGTGGCACCAGTGGCAAGTACTCTATGGTTCGCGGTTCTAGCAGGTCTCTTGATAGAAATCAATCATATACGAATAACTGTTATTTTGGAATGTAGCAGTTGTGATAAAAAGAGTGTTAATAAGGAATCTAGGGGTATTTCTAGATATATTACTCAAAAGAATCGACACAATACACCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTTTTGTTGCAAACATACGATTCACAAATGGGATTTTCGGTATAGGAATAAACAAACCATGGATAAATCTAAGCGACTCTTTCTTAAATCTAAGCAATCTTTTCGTAGGAGTTTGTCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTACTTTATCGACTTATTAGTCAACAAGGAAAAATATTATCTAGACGCGTGAATAGATCAACCTTAAAACAACAACGATTAATTACGATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTGTTAATTCGTCACCTTTTGTGAATAATGAAAAAAAAAAATATGAAAAAAGCGAGTCGATCACTAGAACTCCTACTACTGTTCTAAAAAAAAACAAAAAATAG

Protein sequence

>Msa0268460

MYSKLQEKNEGGFEMRDLKTYLSVAPVASTLWFAVLAGLLIEINHIRITVILECSSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHKWDFRYRNKQTMDKSKRLFLKSKQSFRRSLSPIQSGDRIDYKNMSLLYRLISQQGKILSRRVNRSTLKQQRLITIAIKQARILSLLPFVNSSPFVNNEKKKYEKSESITRTPTTVLKKNKK*